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eQTL mapping using RNA-seq data from tumor samples

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pTReCASE

eQTL mapping using RNA-seq data from tumor samples, combining Total Read Count (TReC) and allele-specific expression (ASE) of each gene, and adjust for tumor purity across samples to estimate eQTL effects for tumor and normal cells separately.

Reference: Wilson DR, Ibrahim JG, Sun W. Mapping Tumor-Specific Expression QTLs In Impure Tumor Samples. Journal of the American Statistical Association. 2019 Apr 23(just-accepted):1-24.

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