OM-RGC v2

Salazar et al., Gene expression changes and community turnover differentially shape the global ocean metatranscriptome, Cell, 2019

Data

• Raw data can be found at the European Nucleotide Archive with identifiers in here
• The Ocean Microbial Reference Gene Catalog v2 (OM-RGC.v2) can be found at BioStudies and at the Companion Website

Scripts

The data used for the production of figures is not synchronized here but can be downloaded with:

git clone https://github.com/SushiLab/omrgc_v2_scripts
cd omrgc_v2_scripts/analysis/
sh Download_data.sh

• analysis: Folder containing the scripts and external resources to produce data, tables and figures.
  • lib: Contains some R functions and external resources used by the scripts.
  • scripts_for_figures: Scripts to produce the tables and figures of the paper.