diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index 8e34d936..88d93b54 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -128955,7 +128955,7 @@ - MAM01445x: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000083807 or ENSG00000140284" + - gene_reaction_rule: "ENSG00000083807" - rxnFrom: "HMRdatabase" - eccodes: "6.2.1.7" - references: "PMID:12543708" @@ -147977,7 +147977,7 @@ - MAM01410e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000113396 or ENSG00000121769 or ENSG00000130304 or ENSG00000135218 or ENSG00000143554 or ENSG00000145384 or ENSG00000163586 or ENSG00000164434 or ENSG00000164687 or ENSG00000167114 or ENSG00000170231 or ENSG00000170323 or ENSG00000197416 or ENSG00000205186" + - gene_reaction_rule: "ENSG00000113396 or ENSG00000121769 or ENSG00000130304 or ENSG00000135218 or ENSG00000145384 or ENSG00000163586 or ENSG00000164434 or ENSG00000164687 or ENSG00000167114 or ENSG00000170231 or ENSG00000170323 or ENSG00000197416 or ENSG00000205186" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -148092,7 +148092,7 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000074410 or ENSG00000104267 or ENSG00000107159 or ENSG00000118298 or ENSG00000131686 or ENSG00000133742 or ENSG00000159593 or ENSG00000164879 or ENSG00000165029 or ENSG00000166747 or ENSG00000167434 or ENSG00000168748 or ENSG00000169239 or ENSG00000174990 or ENSG00000185015" + - gene_reaction_rule: "ENSG00000159593 or ENSG00000166747 or ENSG00000174990" - rxnFrom: "HMRdatabase" - references: "PMID:16858612" - subsystem: @@ -148105,7 +148105,7 @@ - MAM03051e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000113396 or ENSG00000121769 or ENSG00000130304 or ENSG00000135218 or ENSG00000143554 or ENSG00000145384 or ENSG00000163586 or ENSG00000164434 or ENSG00000164687 or ENSG00000167114 or ENSG00000170231 or ENSG00000170323 or ENSG00000197416 or ENSG00000205186" + - gene_reaction_rule: "ENSG00000121769 or ENSG00000130304 or ENSG00000135218 or ENSG00000143554 or ENSG00000145384 or ENSG00000163586 or ENSG00000164434 or ENSG00000164687 or ENSG00000167114 or ENSG00000170231 or ENSG00000170323 or ENSG00000197416 or ENSG00000205186" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -148772,7 +148772,6 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000165029" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -148888,7 +148887,6 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000165029" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -148917,7 +148915,6 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000165029" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -149034,7 +149031,6 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000165029" - rxnFrom: "HMRdatabase" - references: "PMID:16858612" - subsystem: @@ -149182,7 +149178,6 @@ - MAM02939e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000165029" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -149327,7 +149322,6 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000165029" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -149443,7 +149437,6 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000165029" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -149625,7 +149618,6 @@ - MAM02751c: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000165029" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -149993,7 +149985,7 @@ - MAM02897e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000021488 or ENSG00000084453 or ENSG00000111700" + - gene_reaction_rule: "ENSG00000084453 or ENSG00000111700" - rxnFrom: "HMRdatabase" - references: "PMID:14579113" - subsystem: @@ -150027,7 +150019,7 @@ - MAM02901e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000021488 or ENSG00000084453 or ENSG00000111700" + - gene_reaction_rule: "ENSG00000084453 or ENSG00000111700" - rxnFrom: "HMRdatabase" - references: "PMID:14579113" - subsystem: @@ -150061,7 +150053,7 @@ - MAM02900e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000021488 or ENSG00000084453 or ENSG00000111700" + - gene_reaction_rule: "ENSG00000111700" - rxnFrom: "HMRdatabase" - references: "PMID:14579113" - subsystem: @@ -150078,7 +150070,7 @@ - MAM02901e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000021488 or ENSG00000084453 or ENSG00000111700" + - gene_reaction_rule: "ENSG00000084453 or ENSG00000111700" - rxnFrom: "HMRdatabase" - references: "PMID:14579113" - subsystem: @@ -150095,7 +150087,7 @@ - MAM02046e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000021488 or ENSG00000084453 or ENSG00000111700" + - gene_reaction_rule: "ENSG00000084453 or ENSG00000111700" - rxnFrom: "HMRdatabase" - references: "PMID:14579113" - subsystem: @@ -150112,7 +150104,7 @@ - MAM02900e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000021488 or ENSG00000084453 or ENSG00000111700" + - gene_reaction_rule: "ENSG00000084453 or ENSG00000111700" - rxnFrom: "HMRdatabase" - references: "PMID:14579113" - subsystem: @@ -150196,7 +150188,7 @@ - MAM02946e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000091138 or ENSG00000112053 or ENSG00000145217 or ENSG00000147606 or ENSG00000155850 or ENSG00000174502 or ENSG00000181045" + - gene_reaction_rule: "ENSG00000112053 or ENSG00000145217 or ENSG00000155850 or ENSG00000174502 or ENSG00000181045" - rxnFrom: "HMRdatabase" - references: "PMID:12759755" - subsystem: @@ -150529,7 +150521,7 @@ - MAM01910e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000059804 or ENSG00000117394 or ENSG00000136856 or ENSG00000163581 or ENSG00000197496" + - gene_reaction_rule: "ENSG00000059804 or ENSG00000117394 or ENSG00000163581 or ENSG00000197496" - rxnFrom: "HMRdatabase" - references: "PMID:11780753;PMID:11882499;PMID:12750891;PMID:16669350;PMID:1701966;PMID:3399500" - subsystem: @@ -150709,7 +150701,6 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000125454" - rxnFrom: "HMRdatabase" - references: "PMID:11287335;PMID:11327718" - subsystem: @@ -150926,7 +150917,7 @@ - MAM02039e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12107270;PMID:12739169;PMID:12829793;PMID:17173541;PMID:17245649;PMID:18305372;PMID:18375207;PMID:8476015;PMID:8557697;PMID:9786900" - subsystem: @@ -151221,7 +151212,7 @@ - MAM02039e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169;PMID:18305372" - subsystem: @@ -151423,7 +151414,7 @@ - MAM02125e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "(ENSG00000092068 and ENSG00000168003) or ENSG00000003989 or ENSG00000103257 or ENSG00000123643 or ENSG00000139514 or ENSG00000149150 or ENSG00000155465 or ENSG00000165349 or ENSG00000167703" + - gene_reaction_rule: "(ENSG00000092068 and ENSG00000168003) or ENSG00000003989 or ENSG00000103257 or ENSG00000123643 or ENSG00000155465 or ENSG00000165349" - rxnFrom: "HMRdatabase" - references: "PMID:14770310;PMID:11004451;PMID:15465786;PMID:16082501;PMID:17466261;PMID:7718542;PMID:10049700;PMID:10072483;PMID:10391915;PMID:10574970;PMID:11311135;PMID:11389679;PMID:11557028;PMID:11564694;PMID:11742812;PMID:11827462;PMID:12117417;PMID:12824232;PMID:14574404;PMID:7690540;PMID:9751058;PMID:9759917;PMID:12883891;PMID:16288981;PMID:1904693;PMID:4424190;PMID:6432599;PMID:9868191" - subsystem: @@ -151449,7 +151440,7 @@ - MAM02471e: 1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "(ENSG00000092068 and ENSG00000168003) or ENSG00000003989 or ENSG00000103257 or ENSG00000123643 or ENSG00000139514 or ENSG00000149150 or ENSG00000155465 or ENSG00000165349 or ENSG00000167703" + - gene_reaction_rule: "(ENSG00000092068 and ENSG00000168003) or ENSG00000103257 or ENSG00000123643 or ENSG00000149150 or ENSG00000167703" - rxnFrom: "HMRdatabase" - references: "PMID:12930836;PMID:16288981;PMID:911815;PMID:10049700;PMID:10574970;PMID:11389679;PMID:11557028;PMID:11564694;PMID:12824232;PMID:14574404" - subsystem: @@ -151462,7 +151453,7 @@ - MAM03101e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "(ENSG00000092068 and ENSG00000168003) or ENSG00000003989 or ENSG00000103257 or ENSG00000112394 or ENSG00000123643 or ENSG00000139514 or ENSG00000149150 or ENSG00000155465 or ENSG00000165349 or ENSG00000167703" + - gene_reaction_rule: "(ENSG00000092068 and ENSG00000168003) or ENSG00000103257 or ENSG00000112394 or ENSG00000123643 or ENSG00000149150 or ENSG00000155465" - rxnFrom: "HMRdatabase" - references: "PMID:12930836;PMID:16288981;PMID:911815;PMID:10049700;PMID:10574970;PMID:11389679;PMID:11557028;PMID:11564694;PMID:12824232;PMID:14574404" - subsystem: @@ -161839,7 +161830,7 @@ - MAM02403e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000100156 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -161854,7 +161845,7 @@ - MAM01833e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -161869,7 +161860,7 @@ - MAM02833e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -161884,7 +161875,7 @@ - MAM01833e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000118596 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -161899,7 +161890,7 @@ - MAM02772e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000100156 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -161914,7 +161905,7 @@ - MAM02772e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000118596 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -161929,7 +161920,7 @@ - MAM02833e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000100156 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -161944,7 +161935,7 @@ - MAM02772e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000118596 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -161959,7 +161950,7 @@ - MAM01410e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000100156 or ENSG00000118596 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -161974,7 +161965,7 @@ - MAM01253e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000100156 or ENSG00000118596 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -162004,7 +161995,7 @@ - MAM02833e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000100156 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -162019,7 +162010,7 @@ - MAM02403e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000100156 or ENSG00000118596 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -162034,7 +162025,7 @@ - MAM02833e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -162049,7 +162040,7 @@ - MAM01410e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000118596 or ENSG00000141526 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -162064,7 +162055,7 @@ - MAM02833e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000100156 or ENSG00000108932 or ENSG00000118596 or ENSG00000141526 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" + - gene_reaction_rule: "ENSG00000100156 or ENSG00000155380 or ENSG00000168679 or ENSG00000170190" - rxnFrom: "HMRdatabase" - references: "PMID:12739169" - subsystem: @@ -164788,7 +164779,6 @@ - MAM02046e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000174640" - rxnFrom: "HMRdatabase" - references: "PMID:11076394;PMID:11076396;PMID:14579113" - subsystem: @@ -164856,7 +164846,6 @@ - MAM02370e: -1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000174640" - rxnFrom: "HMRdatabase" - references: "PMID:11076394;PMID:11076396;PMID:14579113" - subsystem: @@ -165240,7 +165229,7 @@ - MAM02789e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000112499 or ENSG00000146477 or ENSG00000174640 or ENSG00000175003" + - gene_reaction_rule: "ENSG00000112499 or ENSG00000174640 or ENSG00000175003" - rxnFrom: "HMRdatabase" - references: "PMID:12883891;PMID:12856180;PMID:11023036;PMID:1554704;PMID:18021224;PMID:4553030;PMID:793184;PMID:8725559;PMID:8781017;PMID:12739169" - subsystem: @@ -165895,7 +165884,7 @@ - MAM02039e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000123643 or ENSG00000180773 or ENSG00000186334 or ENSG00000186335" + - gene_reaction_rule: "ENSG00000123643 or ENSG00000186334 or ENSG00000186335" - rxnFrom: "HMRdatabase" - references: "PMID:12748860" - subsystem: @@ -165940,7 +165929,7 @@ - MAM02896e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000123643 or ENSG00000180773 or ENSG00000186334 or ENSG00000186335" + - gene_reaction_rule: "ENSG00000123643 or ENSG00000186334 or ENSG00000186335" - rxnFrom: "HMRdatabase" - references: "PMID:12748860" - subsystem: @@ -165985,7 +165974,6 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000003989 or ENSG00000139514 or ENSG00000165349" - rxnFrom: "HMRdatabase" - references: "PMID:12845534;PMID:10823827;PMID:11452978;PMID:15632147" - subsystem: @@ -166053,7 +166041,6 @@ - MAM02519e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000003989 or ENSG00000139514 or ENSG00000165349" - rxnFrom: "HMRdatabase" - references: "PMID:12845534" - subsystem: @@ -166157,7 +166144,7 @@ - MAM01802e: 1 - lower_bound: -1000 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000039123 or ENSG00000054148 or ENSG00000063601 or ENSG00000067113 or ENSG00000072756 or ENSG00000087053 or ENSG00000126821 or ENSG00000139505 or ENSG00000141934 or ENSG00000162407 or ENSG00000163082" + - gene_reaction_rule: "ENSG00000039123 or ENSG00000054148 or ENSG00000087053 or ENSG00000162407" - rxnFrom: "HMRdatabase" - references: "PMID:14977409;PMID:17466261" - subsystem: @@ -168377,7 +168364,6 @@ - MAM02039e: -1 - lower_bound: 0 - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000118596 or ENSG00000141526 or ENSG00000155380" - rxnFrom: "HMRdatabase" - subsystem: - "Transport reactions" @@ -261210,9 +261196,6 @@ - !!omap - id: "ENSG00000072682" - name: "P4HA2" - - !!omap - - id: "ENSG00000072756" - - name: "TRNT1" - !!omap - id: "ENSG00000072778" - name: "ACADVL" @@ -266163,9 +266146,6 @@ - !!omap - id: "ENSG00000163012" - name: "ZSWIM2" - - !!omap - - id: "ENSG00000163082" - - name: "SGPP2" - !!omap - id: "ENSG00000163106" - name: "HPGDS" diff --git a/model/genes.tsv b/model/genes.tsv index 67ebb53b..b28f2e07 100644 --- a/model/genes.tsv +++ b/model/genes.tsv @@ -247,7 +247,6 @@ "ENSG00000072609" "ENST00000541341;ENST00000266880;ENST00000536843;ENST00000545046;ENST00000443047;ENST00000450056;ENST00000544268;ENST00000315585;ENST00000432561;ENST00000544093;ENST00000535527;ENST00000538235;ENST00000502279;ENST00000511001;ENST00000535897;ENST00000541817;ENST00000540963;ENST00000540537;ENST00000542714;ENST00000536932;ENST00000537551;ENST00000535181;ENST00000536196;ENST00000499045" "ENSP00000266880;ENSP00000416431;ENSP00000398735;ENSP00000320557;ENSP00000392395;ENSP00000483699;ENSP00000478791;ENSP00000445371;ENSP00000441837;ENSP00000443237;ENSP00000443761;ENSP00000475247" "Q96EP1" "CHFR" "55743" "checkpoint with forkhead and ring finger domains" "FLJ10796;RNF196" "Nucleus" "SwissProt;CellAtlas" "ENSG00000072657" "ENST00000548156;ENST00000547300;ENST00000261180;ENST00000552503;ENST00000549138;ENST00000549401;ENST00000549922" "ENSP00000447822;ENSP00000261180" "Q9UKU6" "TRHDE" "29953" "thyrotropin releasing hormone degrading enzyme" "PAP-II;PGPEP2;TRH-DE" "Cell membrane" "DeepLoc2" "ENSG00000072682" "ENST00000360568;ENST00000379104;ENST00000401867;ENST00000379086;ENST00000166534;ENST00000379100;ENST00000474628;ENST00000428369;ENST00000506807;ENST00000467587;ENST00000417528;ENST00000431054;ENST00000439698;ENST00000395164;ENST00000453286;ENST00000418055;ENST00000478055;ENST00000416053;ENST00000428841;ENST00000471826;ENST00000481636" "ENSP00000353772;ENSP00000368398;ENSP00000384999;ENSP00000368379;ENSP00000166534;ENSP00000368394;ENSP00000396495;ENSP00000389523;ENSP00000391257;ENSP00000405406;ENSP00000378593;ENSP00000413542;ENSP00000403883;ENSP00000394953;ENSP00000395956" "O15460" "P4HA2" "8974" "prolyl 4-hydroxylase subunit alpha 2" "C-P4Halpha(II)" "Endoplasmic reticulum" "SwissProt;CellAtlas" -"ENSG00000072756" "ENST00000651591;ENST00000339437;ENST00000251607;ENST00000651316;ENST00000650755;ENST00000280591;ENST00000465998;ENST00000650989;ENST00000651093;ENST00000651352;ENST00000434583;ENST00000397779;ENST00000420393;ENST00000402675;ENST00000413000;ENST00000469632;ENST00000650839;ENST00000482311;ENST00000650814;ENST00000652340" "ENSP00000498240;ENSP00000342985;ENSP00000251607;ENSP00000498787;ENSP00000499122;ENSP00000280591;ENSP00000498942;ENSP00000498449;ENSP00000415100;ENSP00000380881;ENSP00000400394;ENSP00000385745;ENSP00000388615;ENSP00000498970;ENSP00000499120;ENSP00000498624" "Q96Q11" "TRNT1" "51095" "tRNA nucleotidyl transferase 1" "CCA1;CGI-47;MtCCA" "Mitochondria" "SwissProt;CellAtlas" "ENSG00000072778" "ENST00000543245;ENST00000322910;ENST00000582356;ENST00000583312;ENST00000350303;ENST00000578269;ENST00000579286;ENST00000580263;ENST00000582056;ENST00000577857;ENST00000584103;ENST00000577191;ENST00000578421;ENST00000581562;ENST00000356839;ENST00000579886;ENST00000577433;ENST00000582166;ENST00000580365;ENST00000581378;ENST00000583760;ENST00000582379;ENST00000578824;ENST00000583858;ENST00000585203;ENST00000579425;ENST00000578579;ENST00000542255;ENST00000579546;ENST00000578711;ENST00000583850;ENST00000583074;ENST00000579894;ENST00000579391;ENST00000578319;ENST00000578809;ENST00000582450;ENST00000583848;ENST00000578033" "ENSP00000438689;ENSP00000325395;ENSP00000467920;ENSP00000344152;ENSP00000465353;ENSP00000349297;ENSP00000463246;ENSP00000462366;ENSP00000462611;ENSP00000442082;ENSP00000464254;ENSP00000466487" "P49748" "ACADVL" "37" "acyl-CoA dehydrogenase very long chain" "ACAD6;LCACD;VLCAD" "Nucleus;Inner mitochondria" "SwissProt;CellAtlas" "ENSG00000073060" "ENST00000261693;ENST00000339570;ENST00000681788;ENST00000681555;ENST00000680596;ENST00000680982;ENST00000680926;ENST00000680556;ENST00000681686;ENST00000679605;ENST00000415380;ENST00000681117;ENST00000681499;ENST00000545305;ENST00000538291;ENST00000546215;ENST00000535005;ENST00000679955;ENST00000544327;ENST00000539320;ENST00000545493;ENST00000541661" "ENSP00000261693;ENSP00000343795;ENSP00000505605;ENSP00000506281;ENSP00000505571;ENSP00000505757;ENSP00000505406;ENSP00000505370;ENSP00000414979;ENSP00000506693;ENSP00000442862;ENSP00000444851;ENSP00000443454" "Q8WTV0" "SCARB1" "949" "scavenger receptor class B member 1" "CD36L1;CLA-1;CLA1;SR-BI;SRB1" "Cytosol;Lysosome" "CellAtlas" "ENSG00000073417" "ENST00000310298;ENST00000557957;ENST00000339708;ENST00000478717;ENST00000485596;ENST00000559742;ENST00000559086;ENST00000560789;ENST00000557819;ENST00000558543;ENST00000557954;ENST00000561105;ENST00000561374;ENST00000560333;ENST00000561024;ENST00000394553" "ENSP00000311453;ENSP00000453808;ENSP00000340679;ENSP00000432309;ENSP00000431976;ENSP00000452907;ENSP00000454094;ENSP00000378056" "O60658" "PDE8A" "5151" "phosphodiesterase 8A" "HsT19550" "Golgi apparatus" "CellAtlas" @@ -1879,7 +1878,6 @@ "ENSG00000162885" "ENST00000366600;ENST00000675193;ENST00000676288;ENST00000675555;ENST00000477694;ENST00000462374;ENST00000612859;ENST00000313984;ENST00000494378;ENST00000461994" "ENSP00000355559;ENSP00000502069;ENSP00000502392;ENSP00000501896;ENSP00000481548;ENSP00000315678" "Q8NCR0" "B3GALNT2" "148789" "beta-1,3-N-acetylgalactosaminyltransferase 2" "MGC39558" "Endoplasmic reticulum;Golgi apparatus" "SwissProt;CellAtlas" "ENSG00000163002" "ENST00000442895;ENST00000446612;ENST00000409798;ENST00000472844;ENST00000455063;ENST00000295119;ENST00000497330;ENST00000374930;ENST00000479162;ENST00000452137" "ENSP00000403819;ENSP00000412554;ENSP00000387305;ENSP00000393130;ENSP00000295119;ENSP00000364066;ENSP00000412311" "Q8NFH5" "NUP35" "129401" "nucleoporin 35" "MP44" "Nucleus" "SwissProt;CellAtlas" "ENSG00000163012" "ENST00000295131;ENST00000419862" "ENSP00000295131;ENSP00000400595" "Q8NEG5" "ZSWIM2" "151112" "zinc finger SWIM-type containing 2" "MEX;MGC33890;ZZZ2" "Cytosol;Nucleus" "DeepLoc2" -"ENSG00000163082" "ENST00000321276" "ENSP00000315137" "Q8IWX5" "SGPP2" "130367" "sphingosine-1-phosphate phosphatase 2" "FLJ39004;SPP2" "Endoplasmic reticulum" "SwissProt" "ENSG00000163106" "ENST00000295256;ENST00000514774;ENST00000506331" "ENSP00000295256" "O60760" "HPGDS" "27306" "hematopoietic prostaglandin D synthase" "GSTS;GSTS1;GSTS1-1;H-PGDS;PGD2;PGDS" "Nucleus;Cytosol" "SwissProt;CellAtlas" "ENSG00000163114" "ENST00000295266" "ENSP00000295266" "P29803" "PDHA2" "5161" "pyruvate dehydrogenase E1 subunit alpha 2" "PDHAL" "Mitochondria" "SwissProt;CellAtlas" "ENSG00000163131" "ENST00000680288;ENST00000679898;ENST00000680664;ENST00000679512;ENST00000368985;ENST00000472977;ENST00000607427;ENST00000681444;ENST00000680311;ENST00000483930;ENST00000680471;ENST00000680931;ENST00000681357;ENST00000448301;ENST00000681728;ENST00000679582;ENST00000480760;ENST00000681863;ENST00000680466" "ENSP00000506001;ENSP00000505326;ENSP00000506248;ENSP00000505113;ENSP00000357981;ENSP00000475176;ENSP00000475557;ENSP00000505359;ENSP00000505020;ENSP00000475812;ENSP00000506603;ENSP00000504934;ENSP00000408414;ENSP00000505313;ENSP00000504885" "P25774" "CTSS" "1520" "cathepsin S" "" "Cytosol;Lysosome" "SwissProt"