Merge pull request #946 from SysBioChalmers/Fix-Sphingolipid_metabolism

Fix: GPR curation for Sphingolipid metabolism
SysBioChalmers · Jan 8, 2025 · 5ee3092 · 5ee3092
2 parents 008b443 + 8e40b9b
commit 5ee3092
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diff --git a/data/testResults/README.md b/data/testResults/README.md
@@ -4,7 +4,7 @@ The file here contains results from the [MACAW](https://github.com/Devlin-Moyer/
 
 The test results shown here were obtained by the GitHub Actions run in:
 
-- **PR #830** (MACAW)
+- **PR #946** (MACAW)
 - **PR #883** (gene essentiality)
 
 The results will be updated by any subsequent pull request. Summary results are shown as a comment in the corresponding pull request.

diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml
@@ -116304,7 +116304,7 @@
           - MAM02928c: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000067113 or ENSG00000101577 or ENSG00000132793 or ENSG00000134324 or ENSG00000141934 or ENSG00000162407"
+      - gene_reaction_rule: "ENSG00000067113 or ENSG00000141934 or ENSG00000162407"
       - rxnFrom: "HMRdatabase"
       - eccodes: "3.1.3.4"
       - references: "PMID:12411432;PMID:12815058;PMID:7575445"
@@ -116478,7 +116478,7 @@
           - MAM03107r: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000016864 or ENSG00000027847 or ENSG00000060642 or ENSG00000069943 or ENSG00000085998 or ENSG00000086062 or ENSG00000102595 or ENSG00000109586 or ENSG00000117411 or ENSG00000118017 or ENSG00000118276 or ENSG00000119227 or ENSG00000120820 or ENSG00000121578 or ENSG00000124091 or ENSG00000134910 or ENSG00000136731 or ENSG00000139044 or ENSG00000143315 or ENSG00000147162 or ENSG00000148288 or ENSG00000156966 or ENSG00000158470 or ENSG00000158850 or ENSG00000162630 or ENSG00000162885 or ENSG00000163527 or ENSG00000167080 or ENSG00000167889 or ENSG00000170340 or ENSG00000172318 or ENSG00000172461 or ENSG00000172728 or ENSG00000175711 or ENSG00000176383 or ENSG00000176597 or ENSG00000177191 or ENSG00000179913 or ENSG00000180549 or ENSG00000182272 or ENSG00000183778 or ENSG00000187676 or ENSG00000196371 or ENSG00000196968 or ENSG00000198488 or ENSG00000204007 or ENSG00000237172 or ENSG00000251287"
+      - gene_reaction_rule: "ENSG00000016864 or ENSG00000027847 or ENSG00000060642 or ENSG00000086062 or ENSG00000109586 or ENSG00000117411 or ENSG00000118017 or ENSG00000118276 or ENSG00000119227 or ENSG00000120820 or ENSG00000121578 or ENSG00000124091 or ENSG00000134910 or ENSG00000139044 or ENSG00000143315 or ENSG00000148288 or ENSG00000156966 or ENSG00000158470 or ENSG00000158850 or ENSG00000162630 or ENSG00000162885 or ENSG00000163527 or ENSG00000167080 or ENSG00000172318 or ENSG00000176383 or ENSG00000176597 or ENSG00000177191 or ENSG00000179913 or ENSG00000182272 or ENSG00000183778 or ENSG00000187676 or ENSG00000196968 or ENSG00000204007 or ENSG00000237172 or ENSG00000251287"
       - rxnFrom: "HMRdatabase"
       - eccodes: "2.4.1.-"
       - references: "PMID:10856719"
@@ -116511,7 +116511,7 @@
           - MAM02751c: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000067113 or ENSG00000101577 or ENSG00000105520 or ENSG00000117600 or ENSG00000129951 or ENSG00000132793 or ENSG00000134324 or ENSG00000141934 or ENSG00000147535 or ENSG00000162407 or ENSG00000203805"
+      - gene_reaction_rule: "ENSG00000067113 or ENSG00000105520 or ENSG00000117600 or ENSG00000129951 or ENSG00000132793 or ENSG00000134324 or ENSG00000141934 or ENSG00000147535 or ENSG00000162407 or ENSG00000203805"
       - rxnFrom: "HMRdatabase"
       - eccodes: "3.1.3.4"
       - references: "PMID:8403799"
@@ -116546,7 +116546,7 @@
           - MAM02930c: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000067113 or ENSG00000101577 or ENSG00000132793 or ENSG00000134324 or ENSG00000141934 or ENSG00000162407"
+      - gene_reaction_rule: "ENSG00000067113 or ENSG00000101577 or ENSG00000132793 or ENSG00000141934 or ENSG00000162407"
       - rxnFrom: "HMRdatabase"
       - eccodes: "3.1.3.4"
       - references: "PMID:9705349"
@@ -116711,7 +116711,6 @@
           - MAM03107g: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000179913"
       - rxnFrom: "HMRdatabase"
       - eccodes: "2.4.1.-"
       - subsystem:
@@ -116922,7 +116921,6 @@
           - MAM03107g: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000179913"
       - rxnFrom: "HMRdatabase"
       - eccodes: "2.4.1.-"
       - subsystem:
@@ -117644,7 +117642,6 @@
           - MAM03107g: -1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "ENSG00000179913"
       - rxnFrom: "HMRdatabase"
       - eccodes: "2.4.1.-"
       - subsystem: