Fix: GPR curation for Androgen metabolism and Prostaglandin biosynthesis

[JHL-452b]

Main improvements in this PR:

As proposed in #889

• Remove ENSG00000163684 from MAR01321;
• Remove ENSG00000196139 from MAR01325;
• Remove ENSG00000163684 from MAR01395;
• Remove ENSG00000197580 from MAR01959;
• Remove ENSG00000197580 from MAR01960;
• Remove ENSG00000149084 from MAR01973;
• Remove ENSG00000086696, ENSG00000204228 from MAR01974.

I hereby confirm that I have:

• Tested my code on my own computer for running the model
• Selected develop as a target branch
• Any removed reactions and metabolites have been moved to the corresponding deprecated identifier lists

[github-actions]

This PR has been automatically tested with GH Actions. Here is the output of the MACAW test:

Starting dead-end test...
 - Found 1514 dead-end metabolites.
 - Found 1319 reactions incapable of sustaining steady-state fluxes in either direction due to these dead-ends.
 - Found 1977 reversible reactions that can only carry steady-state fluxes in a single direction due to dead-ends.
Starting duplicate test...
 - Skipping redox duplicates because no redox_pairs and/or proton_ids were provided.
 - Found 447 reactions that were some type of duplicate:
   - 0 were completely identical to at least one other reaction.
   - 13 involve the same metabolites but go in the opposite direction or have the opposite reversibility as at least one other reaction.
   - 447 involve the same metabolites but with different coefficients as at least one other reaction.

This and a more detailed output from MACAW are also committed to data/macawResults/.

Note: In the case of multiple test runs, this post will be edited.

[hhl-24]

LGTM!

[github-actions]

This PR has been automatically tested with GH Actions. Here is the output of the gene essentiality test:

     cellLine     TP     TN     FP    FN     accuracy    sensitivity    specificity       F1         MCC   
    __________    __    ____    __    ___    ________    ___________    ___________    ________    ________

    {'DLD1'  }    36    2183    59    279    0.86781       0.11429        0.97368       0.17561     0.15286
    {'GBM'   }    34    2163    61    298    0.85955       0.10241        0.97257       0.15925     0.13325
    {'HCT116'}    46    2205    53    309    0.86146       0.12958        0.97653       0.20264     0.19042
    {'HELA'  }    30    2262    69    253    0.87682       0.10601         0.9704       0.15707     0.12437
    {'RPE1'  }    14    2202    81    259    0.86698      0.051282        0.96452      0.076087    0.025801
    {'all'   }     7    2406    92    109    0.92311      0.060345        0.96317      0.065116    0.025368

Note: In the case of multiple test runs, this post will be edited.