Releases
v1.14.0
Fix: remove 149 non-metabolic genes, that are discovered using the GPT-3 language model, from following subsystems:
#485 remove non-metabolic Isolated (#481 ), and Glycosphingolipid metabolism related genes (#484 )
#480 remove non-metabolic genes from Protein assembly and degradation (#476 ), Glycerophospholipid metabolism (#477 ), Cholesterol biosynthesis pathway (#478 )
#474 remove two rxns wrongly annotated with Phe metabolismand #472 and remove non metabolic gene from aromatic amino acid metabolism (#471 )
#467 remove non-metabolic genes from amino acid metabolism (#463 ), (#464 ), (#465 ), (#466 )
#461 remove non-metabolic genes from Fructose and mannose metabolism (#457 )
#455 remove non-metabolic genes from Inositol phosphate metabolism (#452 )
#453 remove non-metabolic genes from Nucleotide metabolism pathway (#449 )
#451 remove ST20 from Pentose phosphate pathway (#447 )
#450 remove non-transporter genes from transport reactions (#444 )
#445 remove non-metabolic genes from glycolysis pathway (#443 )
#442 removal of MEIKIN from fatty acid activation reactions (#426 )
Feature (PR #482 ):
refactor extractAllianceGenomeOrthologs
from reading JSON to TSV file, as discussed in #15 of Mouse-GEM
Feature/Style (PR #479 ):
Feature (PR #475 ):
improve issue and PR templates
Fix(PR #462 ):
add subunit NDUFA7 to complex I, as explained in #446
Fix (PR #460 ):
correct wrongly associated CHEBI annotation to MAM03882, as reported in Mouse-GEM issue #21
Fix (PR #459 ):
changed subsystems
for 2 exchange rxns, modified name 7 transport rxns, as discussed in #456
You can’t perform that action at this time.