Releases v1.18.0
Fixes (PR #740 )
remove ACAD10 from the GPRs of MAR03212 and MAR03163, as well as from Human-GEM altogether, as explained in #739
Fixes (PR #725 )
remove duplicate 2-oxoadipate dehydrogenase reaction MAR04239, modify GPRs of MAR04599, MAR04209, and MAR06413, remove ENSG00000197444 (OGDHL) gene, as well as incoporate other miscellaneous curations, based on investigation results presented in #719
Fixes (PR #724 )
replace inaccurate GPR and reference for MAR04665 with ENSG00000182199 (SHMT2) and "PMID:11087421", as discussed in #720
Fixes (PR #723 )
revise mitochondrial Glutathione transport reactions as discussed in #722 , by modifying MAR08771, and removing MAR04940 and MAR06391
Style (PR #721 )
add Christoff1993 as a contributor
Fixes (PR #717 )
resolve duplicate chemical speices hexanoate/hexanoic acid by systematically replacing hexanoate (MAM03684c) with hexanoic acid (MAM02120c), as reported by #716
Fixes (PR #715 )
curate GPRs and reaction names of 62 cytosolic short- and medium-chain fatty acid hydrolysis reactions, as proposed in #689
add 4 new hydrolysis reactions
add 2 new genes THEM4 (ENSG00000159445) and THEM5 (ENSG00000196407)
Fixes (PR #714 )
refine GPRs involving LIPT1 (ENSG00000144182) gene, as explained in #683
remove LIPT1 (ENSG00000144182) from the GPRs of MAR01088 and MAR01091
remove MAR06398, MAR06399, and MAM02398c (lipoyl-AMP), MAR06408, and MAM01701c
replace MAM02393m with MAM00209c in MAR08433, MAM01701m with MAM00208c in MAR08434
remove MAM02039c and MAM02039e from MAR11346
remove MAM02039i and MAM02039m from MAR11361
make MAR11361 reversible
Fixes (PR #713 )
split formuate dihydroorotate dehydrogenase reaction MAR04575 into two steps by adding new met MAM20019c (FMNH2) and new rxn MAR20167, as advised in #609
Fixes (PR #712 )
update and maintain consistency in the met IDs for FMN and FMNH2 and update their annotations, according to #711
Fixes (PR #710 )
remove duplicate glycerol-3-phosphate dehydrogenase rxns MAR00478 and MAR00482 and update annotations, as proposed in #599
Fixes (PR #709 )
reorganize nucleotide transport reactions [c]<->[m] by adding genes, reactions, updating GPRs, and removing reactions lack of proper transporters, as listed in #694
Fixes (PR #708 )
revises tryptophan metabolism reactions and GPRs, as outlined in #545
remove ENSG00000159423 (ALDH4A1) from MAR00051
remove MAR08564+MAR08565 that are duplicate to MAR04222
merge annotations for MAR08564+MAR08565 to that of MAR04222
remove derived orhpan met MAM00926c (4-(2-aminophenyl)-2,4-dioxobutanoate)
Fixes (PR #707 )
remove MAR06400 and MAR06401 for being duplicate to MAR06403 and MAR06402, respectively, as illustrated in #682
update reaction annotation and remove derived orphan met MAM02397c (lipoyl-[ACP])
Fixes (PR #706 )
remove lipoic acid transport reactions MAR01483 and MAR06406 that are less accurate duplicates of MAR09608, as notified in #679
merge annotations of MAR01483 and MAR06406 into MAR09608, update Rhea ids and references
Fixes (PR #703 )
merge "Heme biosynthesis" subsystem into "Porphyrin metabolism", to address issues raised in #356 and #681
Fixes (PR #702 )
remove MAR03940 for being redundant with MAR08539+MAR08538, as discovered in #632
Fixes (PR #701 )
extensively revise cofactor transport reactions between cytosol <-> peroxisome, as proposed in #640
Fixes (PR #697 )
comment-out tasks (37, 38, and 181) with NA[c] metabolite in Cellfile metabolic tasks, as discussed in #696
Fixes (PR #696 )
update metabolite name from GAP[c] to D-glyceraldehyde 3-phosphate[c] in Cellfile metabolic tasks, by following the change in #500
Fixes (PR #582 )
enable GitHub action check for detecting duplicate reactions by enabling sanityCheck to report reactions with identical metabolite IDs
remove MAR20012 and MAR20089 that are duplicate to MAR06646 and MAR04545, respectively
Fixes (PR #512 )
change the dependency of Yamllint workflow to the repo hosted by metabolicatlas
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