Releases
v1.6.0
Fixes (PR #222 , #216 ):
revise GPR for HMR_4137
as suggested by #214
add PDHA2
gene as an isoenzyme of PDHA1
, and the supporting reference
Fixes (PR #221 ):
fix InChI strings as proposed in #220 :
add InChI=
prefix to all InChI strings
338 missing InChI strings were filled by retrieving values from the same some metabolites in other compartments
2 different mets but having identical InChI strings were corrected
2 inconsistent formulas between inchi formula
and metFormulas
were fixed
Features (PR #218 , #210 ):
add new functions
addMetabolicNetwork
allows efficient integrating new reactions and metabolites into a model
gapfill4EssentialTasks
conducts gap-filling so that the resulting model can undertake all essential tasks defined by Human-GEM
Features (PR #217 ):
add new metabolic task for vitamin C biosynthesis
Fixes (PR #215 ):
remove GPR association to HMR_4740
, as explained in #149
Fixes/Features (PR #213 ):
remove 16 duplicated mets, which were reported in #184 , and derived duplicated rxns
remove others
reaction, as agreed in #197
move tsv
format annotation files from data/annotation
to model/
Features (PR #212 )
a tsv
-based annotation scheme was implemented, as proposed in #203
JSON format annotation files for rxns, mets and genes were replaced with tsv
format ones
dedicated functions importTsvFile
and exportTsvFile
for handling tsv
files were provided
functions annotateModel
, exportHumanGEM
, sanityCheck
and files README
, CONTRIBUTING
were updated accordingly
Fixes (PR #211 ):
add glpk, which is dependent by swiglpk, to GH Actions workflow
Features (PR #208 ):
tag Human-GEM releases to Zenodo (#194 )
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