Update pyscaffold to v3.2.3 (#63)

* Update environment.yml
* Update pyscaffold v3.2.3
* Update license to mit
* Remove html_theme_options from sphinx theme
* Update travis settings

.coveragerc

@@ -2,7 +2,12 @@
 [run]
 branch = True
 source = pygeogrids
-omit = */_version.py
+# omit = bad_file.py
+
+[paths]
+source =
+    src/
+    */site-packages/
 
 [report]
 # Regexes for lines to exclude from consideration

.gitignore

@@ -3,20 +3,24 @@
 *.py[cod]
 *.so
 *.cfg
+!.isort.cfg
 !setup.cfg
 *.orig
 *.log
 *.pot
 __pycache__/*
 .cache/*
 .*.swp
+*/.ipynb_checkpoints/*
+.DS_Store
 
 # Project files
 .ropeproject
 .project
 .pydevproject
 .settings
 .idea
+tags
 
 # Package files
 *.egg
@@ -30,15 +34,17 @@ htmlcov/*
 .tox
 junit.xml
 coverage.xml
+.pytest_cache/
 
 # Build and docs folder/files
 build/*
 dist/*
 sdist/*
+docs/api/*
 docs/_rst/*
 docs/_build/*
 cover/*
 MANIFEST
 
-# ignore local scripts
-local_scripts/*
+# Per-project virtualenvs
+.venv*/

.travis.yml

@@ -1,32 +1,26 @@
 dist: xenial
 language: python
-sudo: false
 notifications:
   email: false
 python:
   # We don't actually use the Travis Python, but this keeps it organized.
-  - "2.7"
   - "3.6"
   - "3.7"
+  - "3.8"
 env:
   - PINNED=true # use fixed dependencies
   - PINNED=false # use latest dependencies
 matrix:
   exclude:
-    - python: "3.7"
-      env: PINNED=true
+    - python: "3.8"
+      env: PINNED=false
 install:
   # You may want to periodically update this, although the conda update
   # conda line below will keep everything up-to-date.  We do this
   # conditionally because it saves us some downloading if the version is
   # the same.
-  - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
-      wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh;
-      pinned_yml=environment_pinned_py2.yml;
-    else
-      wget http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
-      pinned_yml=environment_pinned_py3.yml;
-    fi
+  - wget http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
+  - pinned_yml=environment_pinned_py3.yml;
   - bash miniconda.sh -b -p $HOME/miniconda
   - export PATH="$HOME/miniconda/bin:$PATH"
   - hash -r

AUTHORS.rst

@@ -0,0 +1,6 @@
+============
+Contributors
+============
+
+* Sebastian Hahn <sebastian.hahn@geo.tuwien.ac.at>
+* Christoph Paulik <cpaulik@vandersat.com>

CHANGES.rst → CHANGELOG.rst

@@ -2,27 +2,27 @@
 Changelog
 =========
 
-v0.2.7
-======
+Version 0.2.7
+=============
 
 - Add k parameter to nearest neighbor search (number of nearest neighbors to return)
 
-v0.2.6
-======
+Version 0.2.6
+=============
 
 - Allow subsetting from non-binary masks
 - Fix ParallelArcDist function (two calls of deg2rad(lat))
 - Update readme
 - Update to PyScaffold 2.5.9
 
-v0.2.5
-======
+Version 0.2.5
+=============
 
 - Fix speed bug of gpi2cell
 - Update copyright header
 
-v0.2.4
-======
+Version 0.2.4
+=============
 
 - Add option to subset a grid with a shape file (OGRGeometry) in
   get_shp_grid_points.
@@ -32,25 +32,25 @@ v0.2.4
 - Ensure that `get_bbox_grid_points` returns points while taking cell order into
   account.
 
-v0.2.3
-======
+Version 0.2.3
+=============
 
 - Fix bug in calc_lut in case of differently ordered subset of a grid.
 - Add function to reorder grid based on different cell size. (See grids.reorder_to_cellsize)
 
-v0.2.2
-======
+Version 0.2.2
+=============
 
 - Add option to load grids with non standard variable name for gpis.
 
-v0.2.1
-======
+Version 0.2.1
+=============
 
 - Fix bug in gpi2lonlat with subset, see #42
 - Add simple script for plotting a global cell partitioning.
 
-v0.2.0
-======
+Version 0.2.0
+=============
 
 - fix bug in storing/loading grids with shape attribute set.
 - change equality check of grids to be more flexible. Now only a match of the
@@ -61,57 +61,57 @@ v0.2.0
   function produced grids with wrong lon2d, lat2d arrays because the shape was
   not correct
 
-v0.1.9
-======
+Version 0.1.9
+=============
 
 -  bugfix in lonlat2cell. Improvements in dependency installation and
    documentation.
 
-v0.1.7
-======
+Version 0.1.7
+=============
 
 -  bugfix in gpi2lonlat. Now supports array as input.
 
-v0.1.6
-======
+Version 0.1.6
+=============
 
 -  add geodatic datum functionality to grid objects
 
-v0.1.5
-======
+Version 0.1.5
+=============
 
 -  bugfix of subgrid creation which returned wrongly shaped subarrays
 
-v0.1.4
-======
+Version 0.1.4
+=============
 
 -  fix bug in lookuptable generation when gpis have custom ordering
 -  add functions for getting subgrids from cells and gpis
 
-v0.1.3
-======
+Version 0.1.3
+=============
 
 -  change meaning and rename grid dimensions to lon2d, lat2d. They do
    now represent 2d arrays of latitudes and longitudes which means that
    they no longer have to be regular in order to be able to have a
    shape. This is useful for e.g. orbit data
 
-v0.1.2
-======
+Version 0.1.2
+=============
 
 -  fix issue #19 by refactoring the iterable checking into own function
 -  made pykdtree an optional requirement see issue #18
 
-v0.1.1
-======
+Version 0.1.1
+=============
 
 -  added support for saving more subsets and loading a certain one
    in/from a netcdf grid file
 -  fix #15 by setting correct shape for derived cell grids
 -  fix issue #14 of gpi2rowcol input types
 
-v0.1
-====
+Version 0.1
+===========
 
 -  Initial version pulled out of pytesmo
 -  added support for iterables like lists and numpy arrays to functions

LICENSE.txt

@@ -1,29 +1,21 @@
-Copyright (c) 2018, TU Wien, Department of Geodesy and Geoinformation
-All rights reserved.
+MIT License
 
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
+Copyright (c) 2020 TU Wien
 
-* Redistributions of source code must retain the above copyright notice, this
-  list of conditions and the following disclaimer.
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
 
-* Redistributions in binary form must reproduce the above copyright notice,
-  this list of conditions and the following disclaimer in the documentation
-  and/or other materials provided with the distribution.
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
 
-* Neither the name of TU Wien, Department of Geodesy and Geoinformation
-  nor the names of its contributors may be used to endorse or promote
-  products derived from this software without specific prior written
-  permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
-ARE DISCLAIMED. IN NO EVENT SHALL TU WIEN, DEPARTMENT OF GEODESY AND
-GEOINFORMATION BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
-EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
-OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.rst

@@ -87,4 +87,10 @@ If you want to contribute please follow these steps:
 - Add your feature
 - Please include tests for your contributions in one of the test directories.
   We use py.test so a simple function called test_my_feature is enough
-- submit a pull request to our master branch
+- submit a pull request to our master branch
+
+Note
+====
+
+This project has been set up using PyScaffold 3.2.3. For details and usage
+information on PyScaffold see https://pyscaffold.org/.