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docs: Add biorxiv link to README and leaderboard (#15)
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scopello authored Jul 17, 2024
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18 changes: 14 additions & 4 deletions README.md
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Expand Up @@ -10,8 +10,8 @@ sdk_version: 4.36.1
<a href="https://github.com/tattabio/dgeb/releases">
<img alt="GitHub release" src="https://img.shields.io/github/v/release/tattabio/dgeb.svg">
</a>
<a href="">
<img alt="arXiv URL" src="">
<a href="https://www.biorxiv.org/content/10.1101/2024.07.10.602933v1">
<img alt="bioRxiv URL" src="https://img.shields.io/badge/bioRxiv-602933v1-b31b1b.svg">
</a>
<a href="https://github.com/tattabio/dgeb/blob/main/LICENSE">
<img alt="License" src="https://img.shields.io/github/license/tattabio/dgeb.svg">
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## Citing

DGEB was introduced in "[Diverse Genomic Embedding Benchmark for Functional Evaluation Across the Tree of Life](https://www.tatta.bio/dgeb)", feel free to cite:
DGEB was introduced in "[Diverse Genomic Embedding Benchmark for Functional Evaluation Across the Tree of Life](https://www.biorxiv.org/content/10.1101/2024.07.10.602933v1)", feel free to cite:

TODO
```
@article{WestRoberts2024,
title = {Diverse Genomic Embedding Benchmark for functional evaluation across the tree of life},
url = {http://dx.doi.org/10.1101/2024.07.10.602933},
DOI = {10.1101/2024.07.10.602933},
publisher = {Cold Spring Harbor Laboratory},
author = {West-Roberts, Jacob and Kravitz, Joshua and Jha, Nishant and Cornman, Andre and Hwang, Yunha},
year = {2024},
month = jul
}
```
2 changes: 1 addition & 1 deletion leaderboard/app.py
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Expand Up @@ -199,7 +199,7 @@ def task_results_to_df(model_results: List[TaskResult]) -> pd.DataFrame:
gr.HTML(
"""
<div style='width: 50%; margin-left: auto; margin-right: auto; padding-bottom: 8px;text-align: center;'>
DGEB Leaderboard. To submit, refer to the <a href="https://github.com/TattaBio/DGEB/blob/leaderboard/README.md" target="_blank" style="text-decoration: underline">DGEB GitHub repository</a> Refer to the <a href="https://www.tatta.bio/dgeb" target="_blank" style="text-decoration: underline">DGEB paper</a> for details on metrics, tasks, and models.
DGEB Leaderboard. To submit, refer to the <a href="https://github.com/TattaBio/DGEB/blob/leaderboard/README.md" target="_blank" style="text-decoration: underline">DGEB GitHub repository</a> Refer to the <a href="https://www.biorxiv.org/content/10.1101/2024.07.10.602933v1" target="_blank" style="text-decoration: underline">DGEB paper</a> for details on metrics, tasks, and models.
</div>
"""
)
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