Merge branch 'main' into py_results

TattaBio · Sep 3, 2024 · 41896ba · 41896ba
2 parents 694f9ae + 86b3511
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,11 +1,44 @@
 # CHANGELOG
 
+## v0.1.1 (2024-09-03)
+
+### Build
+
+* build(deps): Bump the pip group across 1 directory with 2 updates (#17)
+
+Signed-off-by: dependabot[bot] &lt;support@github.com&gt;
+Co-authored-by: dependabot[bot] &lt;49699333+dependabot[bot]@users.noreply.github.com&gt; ([`36fe451`](https://github.com/TattaBio/DGEB/commit/36fe4510b52377c0e7c67ba118493f45e3c85018))
+
+### Documentation
+
+* docs: Add biorxiv link to README and leaderboard (#15) ([`1160976`](https://github.com/TattaBio/DGEB/commit/11609763e6a2c029bfdc49d0e8ab2ae341b7a613))
+
+* docs: Create pull_request_template.md (#13) ([`6c7b831`](https://github.com/TattaBio/DGEB/commit/6c7b831585ef9e2232f688b31475453cb2472b3d))
+
+* docs: Add dgeb paper link (#12) ([`a34c596`](https://github.com/TattaBio/DGEB/commit/a34c5962ee70062fd468fc9409e75e931bc353f7))
+
+### Fix
+
+* fix: reduce package requirements (#20) ([`c838fe4`](https://github.com/TattaBio/DGEB/commit/c838fe4f9f462b53f7fa2c273e45acddcb305e5a))
+
+### Unknown
+
+* Leaderboard link fix (#16) ([`a1125ca`](https://github.com/TattaBio/DGEB/commit/a1125cae1dea29a13a949ab5aa26b54de1604d53))
+
+* Docs: Update README.md (#14) ([`280d4fe`](https://github.com/TattaBio/DGEB/commit/280d4fe35b9e5b139326e4e9a9a26e3519c60fc3))
+
 ## v0.1.0 (2024-07-11)
 
 ### Feature
 
 * feat: Launch ([`566f3c9`](https://github.com/TattaBio/DGEB/commit/566f3c9a624634a565e22f9e31d3ac80444fe720))
 
+### Unknown
+
+* 0.1.0
+
+Automatically generated by python-semantic-release [skip ci] ([`d0cef8b`](https://github.com/TattaBio/DGEB/commit/d0cef8b583c1a97a1a652a3929c3911982acb561))
+
 ## v0.0.0 (2024-07-11)
 
 ### Unknown

diff --git a/leaderboard/requirements.txt b/leaderboard/requirements.txt
@@ -1,11 +1,11 @@
 aiofiles==23.2.1
-aiohttp==3.9.5
+aiohttp==3.10.2
 aiosignal==1.3.1
 altair==5.3.0
 annotated-types==0.7.0
 anyio==4.4.0
 attrs==23.2.0
-certifi==2024.6.2
+certifi==2024.7.4
 charset-normalizer==3.3.2
 click==8.1.7
 contourpy==1.2.1

diff --git a/pyproject.toml b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "dgeb"
-version = "0.1.0"
+version = "0.1.1"
 description = "Diverse Genomic Embedding Benchmark"
 readme = "README.md"
 license = { file = "LICENSE" }
@@ -27,15 +27,15 @@ classifiers = [
 dependencies = [
     "datasets>=2.20.0",
     "matplotlib>=3.9.0",
-    "numpy>=2.0.0",
+    "numpy>=1.0.0",
     "pandas>=2.2.2",
-    "pydantic>=2.7.4",
+    "pydantic>=2.0.0",
     "pytrec_eval_terrier>=0.5",
     "rich>=13.7.1",
     "scikit_learn>=1.5.0",
     "scipy>=1.13.1",
     "seaborn>=0.13.2",
-    "torch>=2.3.1",
+    "torch>1.0.0",
     "tqdm>=4.66.4",
     "transformers>=4.41.2",
 ]