From f229466568ac7b026698724f00ceeac4dadecbd9 Mon Sep 17 00:00:00 2001
From: Paul Stevenson <39392144+pgstevenson@users.noreply.github.com>
Date: Thu, 23 Aug 2018 17:02:55 +0800
Subject: [PATCH] removed README.Rmd
---
.Rbuildignore | 6 ++++++
.Rprofile | 45 +++++++++++++++++++++++++++++++++++++++++++++
.gitignore | 10 ++++++++++
README.Rmd | 47 -----------------------------------------------
4 files changed, 61 insertions(+), 47 deletions(-)
create mode 100644 .Rbuildignore
create mode 100644 .Rprofile
create mode 100644 .gitignore
delete mode 100644 README.Rmd
diff --git a/.Rbuildignore b/.Rbuildignore
new file mode 100644
index 0000000..cb92802
--- /dev/null
+++ b/.Rbuildignore
@@ -0,0 +1,6 @@
+^.*\.Rproj$
+^\.Rproj\.user$
+^README\.Rmd$
+^data-raw$
+^archive$
+^\.git$
diff --git a/.Rprofile b/.Rprofile
new file mode 100644
index 0000000..553015f
--- /dev/null
+++ b/.Rprofile
@@ -0,0 +1,45 @@
+# Telethon Kids Institute custom .Rprofile script
+# see https://www.statmethods.net/interface/customizing.html
+# Template v1.0 created by Paul Stevenson 17-May-2018
+
+# Set default CRAN repository
+# local({r <- getOption("repos")
+# r["CRAN"] <- "https://cran.curtin.edu.au/"
+# options(repos=r)})
+
+# Things you might want to change
+options(papersize="a4")
+# options(editor="notepad")
+# options(pager="internal")
+
+# R interactive prompt
+# options(prompt="> ")
+# options(continue="+ ")
+
+# to prefer Compiled HTML
+# help options(chmhelp=TRUE)
+# to prefer HTML help
+options(htmlhelp = TRUE)
+
+# General options
+options(tab.width = 2)
+options(width = 130)
+options(graphics.record=TRUE)
+
+.First <- function(){
+ library(stats)
+ library(reshape2)
+ library(plyr)
+ library(tidyverse)
+ library(lubridate)
+ library(ProjectTemplate)
+ library(repmis)
+ cat("\nWelcome -", date(), "\n")
+}
+
+.Last <- function(){
+ cat("\nGoodbye at ", date(), "\n")
+}
+
+# Custom mappings
+h <- utils::head
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..67498df
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,10 @@
+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata
+README.Rmd
+
+# Ignore data files
+/archive
+/data-raw
+inst/doc
diff --git a/README.Rmd b/README.Rmd
deleted file mode 100644
index 265cf86..0000000
--- a/README.Rmd
+++ /dev/null
@@ -1,47 +0,0 @@
----
-title: "Telethon Kids Institute R markdown templates"
-output: github_document
----
-
-
-
-A pair of templates have been created that incorporate styling themes present throughout Telethon Kid’s style guide, web page and template documents. Currently, templates are available to produce stand-alone HTML reports and ioslides presentations. These templates also include colour palates that will automatically reproduce Telethon Kids style in R graphics. A number of helper functions and data-sets are also available.
-
-## Getting started
-
-### Installing
-
-The Telethon Kids Institute biometrics package can be installed with:
-
- devtools::install_github("TelethonKids/biometrics", build_vignettes = TRUE)
-
-### Creating an new document
-
-Once the *biometrics* package has been installed, the templates can be accessed through the *New -> R markdown -> From template* menu.
-
-## Using the template
-
-Both templates have been created with R markdown and the normal syntax should be followed. Some specific instructions and examples are included in default documents. A cheat-sheet explaining how to use markdown in R has been prepared by [R Studio](https://www.rstudio.com/resources/cheatsheets/).
-
-
- 
- 
-
-
-## Authors
-
-**Paul Stevenson** - *Initial development* - [pgstevenson](https://github.com/pgstevenson)
-
-## License
-
-This project is licensed under the GNU General Public License - see the [LICENSE](LICENSE) file for details.
-
-## About Telethon Kids Institute
-
-The Telethon Kids Institute is based within the Perth Children’s Hospital, and is one of the largest, and most successful medical research institutes in Australia, comprising a dedicated and diverse team of more than 700 staff and students.
-
-We've created a bold blueprint that brings together community, researchers, practitioners, policy makers and funders, who share our vision to improve the health and wellbeing of children through excellence in research.
-
-The Institute is headed by leading paediatrician and infectious diseases expert Professor Jonathan Carapetis AM, with Founding Director Professor Fiona Stanley AC now Patron. Telethon Kids is independent and not-for-profit.
-
-