NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(predict,varppRule)
S3method(print,varpp)
S3method(print,varppRule)
export(.class_by_threshold)
export(.extract_ranger_rules)
export(.sample_benign_variants)
export(.threshold)
export(auPRC)
export(auROC)
export(density_plot)
export(genePanelTop)
export(getCADDcutOff)
export(kappa_stats)
export(lasso_ensemble)
export(metrics)
export(performance)
export(performance_varpp)
export(removeCADD)
export(ruleVarImp)
export(ruleVariantPlot)
export(rule_fit)
export(selected_rule_performance)
export(varIMP)
export(varpp)
export(varpp_for_rulefit)
export(varpp_report)
import(DT)
import(caret)
import(doMC)
import(doParallel)
import(dplyr)
import(foreach)
import(ggplot2)
import(glmnet)
import(grid)
import(knitr)
import(lattice)
import(magrittr)
import(pROC)
import(pander)
import(parallel)
import(precrec)
import(progress)
import(ranger)
import(rmarkdown)
import(stringr)
import(tidypredict)
import(tidyr)
import(tidyselect)
import(tidyverse)
importFrom(caret,confusionMatrix)
importFrom(caret,nearZeroVar)
importFrom(caret,train)
importFrom(caret,trainControl)
importFrom(iterators,icount)
importFrom(magrittr,"%>%")
importFrom(magrittr,'%>%')
importFrom(plyr,count)
importFrom(stringr,str_extract)
importFrom(stringr,str_remove)
importFrom(stringr,str_squish)