Glens

Glens is a Scala library for reading and writing genomic data files.

Feature

• Object definitions for biological data formats
• Mapping data files into objects

Supported Formats

• FASTA
• FASTQ
• BED
• WIG

ToDo

• Add format support
  • GFF
  • SAM/BAM (using picard)
  • AXT
  • bigWig/bigBED
  • Silk
• Data storage
  • compressed storage
  • split for parallel read/write
• Synchronization