Glens

Glens is a Scala library for reading and writing genomic data files.

Feature

Object definitions for biological data formats
Mapping data files into objects

Supported Formats

FASTA
FASTQ
BED
WIG

ToDo

Add format support
- GFF
- SAM/BAM (using picard)
- AXT
- bigWig/bigBED
- Silk
Data storage
- compressed storage
- split for parallel read/write
Synchronization