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jupyter to streamlit workflow #55

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wants to merge 64 commits into from
Closed

jupyter to streamlit workflow #55

wants to merge 64 commits into from

Commits on Mar 31, 2020

  1. Merge pull request #10 from TheDataRideAlongs/fix(50m) 

    fix(fh include): use local path
    @lmeyerov
    lmeyerov authored Mar 31, 2020
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Commits on Apr 1, 2020

  1. refactor(print): now via Python logger

    @lmeyerov
    lmeyerov committed Apr 1, 2020
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  2. fix(fh missing cols): handle

    @lmeyerov
    lmeyerov committed Apr 1, 2020
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  3. feat(fixed fh arrow schema): and jsonify nested cols bc pq writer can… 

    …not handle
    @lmeyerov
    lmeyerov committed Apr 1, 2020
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  4. Merge pull request #11 from TheDataRideAlongs/dev/fix-fh 

    fix(fh)
    @lmeyerov
    lmeyerov authored Apr 1, 2020
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  5. Changed the print() statements for actual pythong logging statements

    @bechbd
    bechbd committed Apr 1, 2020
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  6. Merge pull request #12 from TheDataRideAlongs/logging_fix 

    Changed the print() statements for actual python logging statements
    @bechbd
    bechbd authored Apr 1, 2020
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Commits on Apr 2, 2020

  1. addig gitignore

    @007vasy
    007vasy committed Apr 2, 2020
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  2. Merge branch 'master' into Issue-#1

    @007vasy
    007vasy committed Apr 2, 2020
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  3. prints changed to logger

    @007vasy
    007vasy committed Apr 2, 2020
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  4. Added methods to get_from_neo and get_tweets_by_id

    @bechbd
    bechbd committed Apr 2, 2020
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  5. Merge pull request #14 from TheDataRideAlongs/logging_fix 

    Added methods to get_from_neo and get_tweets_by_id
    @bechbd
    bechbd authored Apr 2, 2020
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  6. Use pandas when cudf does not exist

    @ZiyaoWei
    ZiyaoWei committed Apr 2, 2020
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  7. Merge pull request #15 from TheDataRideAlongs/wzy/no_gpu 

    Use pandas when cudf does not exist
    @ZiyaoWei
    ZiyaoWei authored Apr 2, 2020
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  8. Prototype rehydrate pipeline

    @ZiyaoWei
    ZiyaoWei committed Apr 2, 2020
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  9. Fix bug

    @ZiyaoWei
    ZiyaoWei committed Apr 2, 2020
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  10. docs(README): add calendar

    @lmeyerov
    lmeyerov authored Apr 2, 2020
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  11. Merge branch 'master' into Issue-#1

    @007vasy
    007vasy authored Apr 2, 2020
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  12. Fixed issue with limit on get_from_neo, added timeout parameter, and … 

    …changed to neo4j driver
    @bechbd
    bechbd committed Apr 2, 2020
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  13. Merge pull request #13 from TheDataRideAlongs/Issue-#1 

    Issue #1
    @007vasy
    007vasy authored Apr 2, 2020
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  14. Merge branch 'master' into switch_python_neo_driver

    @bechbd
    bechbd authored Apr 2, 2020
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  15. Merge pull request #17 from TheDataRideAlongs/switch_python_neo_driver 

    Fixed issue with limit on get_from_neo, added timeout parameter, and …
    @bechbd
    bechbd authored Apr 2, 2020
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Commits on Apr 3, 2020

  1. docs(tightening)

    @lmeyerov
    lmeyerov authored Apr 3, 2020
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  2. Skip when there is no data

    @ZiyaoWei
    ZiyaoWei committed Apr 3, 2020
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  3. Fix logging, add parameter for saving to Neo4j

    @ZiyaoWei
    ZiyaoWei committed Apr 3, 2020
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  4. Merge pull request #20 from TheDataRideAlongs/wzy/rehydratePipeline 

    Rehydrate pipeline
    @ZiyaoWei
    ZiyaoWei authored Apr 3, 2020
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  5. docs(issue tracker): link gh projects on README

    @lmeyerov
    lmeyerov authored Apr 3, 2020
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  6. docs(volunteers): Add legal

    @lmeyerov
    lmeyerov authored Apr 3, 2020
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  7. docs(README): project tracker links

    @lmeyerov
    lmeyerov authored Apr 3, 2020
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  8. Got initial version of the unit tests working for Neo

    @bechbd
    bechbd committed Apr 3, 2020
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Commits on Apr 4, 2020

  1. Add docker-compose.yml for prefect UI

    @ZiyaoWei
    ZiyaoWei committed Apr 4, 2020
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  2. Merge pull request #37 from TheDataRideAlongs/wzy/dockerizePrefect 

    Add docker-compose.yml for prefect UI
    @ZiyaoWei
    ZiyaoWei authored Apr 4, 2020
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Commits on Apr 6, 2020

  1. fixed getting interlnational trials, with utf8 encoding

    @007vasy
    007vasy committed Apr 6, 2020
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  2. urls to config

    @007vasy
    007vasy committed Apr 6, 2020
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  3. removed consol useage from scraping data

    @007vasy
    007vasy committed Apr 6, 2020
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  4. Dockerize pipeline and add instructions

    @ZiyaoWei
    ZiyaoWei committed Apr 6, 2020
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  5. Merge pull request #40 from TheDataRideAlongs/wzy/dockerizePipelines 

    Dockerize pipeline and add instructions
    @ZiyaoWei
    ZiyaoWei authored Apr 6, 2020
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  6. confortable neo4j import setup

    @007vasy
    007vasy committed Apr 6, 2020
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  7. confortable edge inserting into neo4j

    @007vasy
    007vasy committed Apr 6, 2020
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  8. flexible insertion into neo4j

    @007vasy
    007vasy committed Apr 6, 2020
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  9. add config

    @007vasy
    007vasy committed Apr 6, 2020
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Commits on Apr 7, 2020

  1. Made minor tweaks to get the prefect ui stuff to run correctly on the… 

    … prod host
    @bechbd
    bechbd committed Apr 7, 2020
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  2. Merge pull request #48 from TheDataRideAlongs/update-prefect-ui-files 

    Made minor tweaks to get the prefect ui stuff to run correctly on the…
    @bechbd
    bechbd authored Apr 7, 2020
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  3. data scraping into class

    @007vasy
    007vasy committed Apr 7, 2020
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  4. updated gitignore

    @007vasy
    007vasy committed Apr 7, 2020
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  5. all drugs and synonyms are imported

    @007vasy
    007vasy committed Apr 7, 2020
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  6. cleanup

    @007vasy
    007vasy committed Apr 7, 2020
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  7. refactor

    @007vasy
    007vasy committed Apr 7, 2020
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  8. filtering international studies

    @007vasy
    007vasy committed Apr 7, 2020
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  9. docs(README.md): infra links

    @lmeyerov
    lmeyerov authored Apr 7, 2020
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Commits on Apr 8, 2020

  1. Merge pull request #52 from TheDataRideAlongs/add_neo_unit_tests 

    Got initial version of the unit tests working for Neo
    @bechbd
    bechbd authored Apr 8, 2020
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  2. Added metrics configuration

    @bechbd
    bechbd committed Apr 8, 2020
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  3. Added metrics configuration

    @bechbd
    bechbd committed Apr 8, 2020
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  4. drug analysis

    @007vasy
    007vasy committed Apr 8, 2020
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Commits on Apr 9, 2020

  1. table merging WIP

    @007vasy
    007vasy committed Apr 9, 2020
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  2. studies normalized into one table from 2 different sources

    @007vasy
    007vasy committed Apr 9, 2020
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  3. #39 - Added method to allow for adding enrichment properties to a node

    @bechbd
    bechbd committed Apr 9, 2020
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  4. studies to neo4j is done

    @007vasy
    007vasy committed Apr 9, 2020
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  5. WF

    @007vasy
    007vasy committed Apr 9, 2020
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  6. study import fix

    @007vasy
    007vasy committed Apr 9, 2020
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  7. drug-study links

    @007vasy
    007vasy committed Apr 9, 2020
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  8. cudf set up

    @007vasy
    007vasy committed Apr 9, 2020
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  9. dict to cypher property code merge for make it available for others

    @007vasy
    007vasy committed Apr 9, 2020
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  10. Merge pull request #56 from TheDataRideAlongs/DictToCypherProperties 

    Dict to cypher properties
    @bechbd
    bechbd authored Apr 9, 2020
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