pyproject.toml

[tool.poetry]
name = "geneweaver-aon"
version = "0.3.0"
description = "A service to do Homology and Orthology mapping."
authors = ["Sophie Kearney <sophie_kearney1@baylor.edu>", "Alexander Berger <alexander.berger@jax.org>"]
readme = "README.md"
license = "Apache-2.0"
homepage = "https://thejacksonlaboratory.github.io/geneweaver-docs/"
repository = "https://github.com/TheJacksonLaboratory/geneweaver-aon"
packages = [
    { from = "src", include = "geneweaver/aon" }
]

[tool.poetry.scripts]
gwaon = "geneweaver.aon.cli.main:cli"

[tool.poetry.dependencies]
python = "^3.9"
flask = "2.2.2"
flask-cors = "3.0.10"
flask-restx = "1.0.5"
sqlalchemy = "^2.0.0"
alembic = "1.9.2"
requests = "2.28.2"
python-jose = "3.3.0"
click = "8.1.3"
environs = "9.5.0"
werkzeug = "2.2.2"
psycopg = {extras = ["pool"], version = "^3.1.18"}
geneweaver-core = "^0.9.0a2"
geneweaver-db = "0.3.0a6"
fastapi = {version = "^0.99.1", extras = ["all"]}
typer = {extras = ["all"], version = "^0.9.0"}
temporalio = "^1.5.0"

[tool.poetry.group.dev.dependencies]
geneweaver-testing = "^0.1.1"
xmlrunner = "1.7.7"
notebook = "^7.0.7"
pytest = "^7.4.0"
pytest-cov = "^4.1.0"

[tool.ruff]
select = ['F', 'E', 'W', 'A', 'C90', 'N', 'B', 'ANN', 'D', 'I', 'ERA', 'PD', 'NPY', 'PT']

[tool.ruff.per-file-ignores]
"tests/*" = ["ANN001", "ANN201"]
"src/*" = ["ANN101"]
"src/geneweaver/aon/controller/*" = ["B008", "ANN201"]

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"