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G3 5 deploy geneweaver api to shared clusters #2

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This PR adds the manifests, configurations, and GH actions definitions required to deploy the api to the four standard CompSci cluster environments.

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github-actions bot commented Dec 11, 2023

Test Coverage Report

============================= test session starts ==============================
platform linux -- Python 3.11.7, pytest-7.4.0, pluggy-1.2.0
rootdir: /home/runner/work/geneweaver-api/geneweaver-api
plugins: cov-4.1.0, asyncio-0.21.1, anyio-3.7.1
asyncio: mode=Mode.STRICT
collected 15 items

tests/services/io/test_read_file_contents.py ...............             [100%]

---------- coverage: platform linux, python 3.11.7-final-0 -----------
Name                                            Stmts   Miss  Cover
-------------------------------------------------------------------
src/geneweaver/api/__init__.py                      0      0   100%
src/geneweaver/api/controller/__init__.py           0      0   100%
src/geneweaver/api/controller/api.py                9      9     0%
src/geneweaver/api/controller/batch.py             12     12     0%
src/geneweaver/api/controller/genesets.py          24     24     0%
src/geneweaver/api/controller/search.py             0      0   100%
src/geneweaver/api/core/__init__.py                 0      0   100%
src/geneweaver/api/core/config.py                   2      2     0%
src/geneweaver/api/core/config_class.py            27     27     0%
src/geneweaver/api/core/db.py                       0      0   100%
src/geneweaver/api/core/deps.py                     3      3     0%
src/geneweaver/api/core/exceptions.py               7      7     0%
src/geneweaver/api/core/security.py               116    116     0%
src/geneweaver/api/dependencies.py                 16     16     0%
src/geneweaver/api/main.py                          1      1     0%
src/geneweaver/api/schemas/__init__.py              0      0   100%
src/geneweaver/api/schemas/auth.py                 19     19     0%
src/geneweaver/api/schemas/batch.py                 6      6     0%
src/geneweaver/api/schemas/messages.py             18     18     0%
src/geneweaver/api/schemas/score.py                13     13     0%
src/geneweaver/api/services/__init__.py             0      0   100%
src/geneweaver/api/services/batch.py               13     13     0%
src/geneweaver/api/services/geneset.py              0      0   100%
src/geneweaver/api/services/io.py                   4      0   100%
src/geneweaver/api/services/parse/__init__.py       0      0   100%
src/geneweaver/api/services/parse/batch.py         11     11     0%
src/geneweaver/api/services/pubmeds.py              0      0   100%
-------------------------------------------------------------------
TOTAL                                             301    297     1%
Coverage HTML written to dir htmlcov

Required test coverage of 1% reached. Total coverage: 1.33%

============================== 15 passed in 0.87s ==============================

@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 17:24 — with GitHub Actions Failure
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 18:04 — with GitHub Actions Failure
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 18:11 — with GitHub Actions Failure
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 18:14 — with GitHub Actions Failure
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 18:20 — with GitHub Actions Failure
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 18:28 — with GitHub Actions Failure
@bergsalex bergsalex temporarily deployed to jax-cluster-dev-10--dev December 11, 2023 18:46 — with GitHub Actions Inactive
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 18:48 — with GitHub Actions Failure
@bergsalex bergsalex temporarily deployed to jax-cluster-dev-10--dev December 11, 2023 18:55 — with GitHub Actions Inactive
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 18:56 — with GitHub Actions Failure
@bergsalex bergsalex temporarily deployed to jax-cluster-dev-10--dev December 11, 2023 19:00 — with GitHub Actions Inactive
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 19:02 — with GitHub Actions Failure
@bergsalex bergsalex temporarily deployed to jax-cluster-dev-10--dev December 11, 2023 19:27 — with GitHub Actions Inactive
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 19:29 — with GitHub Actions Failure
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 19:35 — with GitHub Actions Failure
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 19:43 — with GitHub Actions Failure
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 20:27 — with GitHub Actions Failure
@bergsalex bergsalex had a problem deploying to jax-cluster-dev-10--dev December 11, 2023 20:45 — with GitHub Actions Failure
@bergsalex bergsalex closed this Dec 11, 2023
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