TheJacksonLaboratory · bergsalex · Mar 28, 2024 · Mar 28, 2024 · Mar 28, 2024
diff --git a/docs/index.md b/docs/index.md
@@ -24,29 +24,29 @@
 
     Architected to make it easy to get started, whichever way makes sense for you.
 
-    [:octicons-arrow-right-24: Jump Into Using The Website](/getting-started/web-application/)
+    [:octicons-arrow-right-24: Jump Into Using The Website](getting-started/web-application/)
 
-    [:octicons-arrow-right-24: Download the Geneweaver CLI](/reference/command-line/)
+    [:octicons-arrow-right-24: Use The API](reference/api-standards/)
 
-    [:octicons-arrow-right-24: Build With Our Python Packages](/reference/available-packages/)
+    [:octicons-arrow-right-24: Build With Our Python Packages](reference/available-packages/)
 
 -   :simple-jupyter:{ .lg .middle } __Example Workflows__
 
     ---
 
     Follow real examples of how GeneWeaver's tools will be used to do analysis.
 
-    [:octicons-arrow-right-24: NCI-60 Workflow](/tutorial/nci_60_example_01/)
+    [:octicons-arrow-right-24: NCI-60 Workflow](tutorial/nci_60_example_01/)
 
-    [:octicons-arrow-right-24: Authenticating With The Client Library](/tutorial/geneweaver_client_login/)
+    [:octicons-arrow-right-24: Authenticating With The Client Library](tutorial/geneweaver_client_login/)
 
 -   :material-api:{ .lg .middle } __API Standards__
 
     ---
 
     Developed to be consistent with our open API Standards.
 
-    [:octicons-arrow-right-24: Standards Documentation](/reference/api-standards/)
+    [:octicons-arrow-right-24: Standards Documentation](reference/api-standards/)
 
 -   :material-scale-balance:{ .lg .middle } __Open Source, Apache License 2.0__
 

diff --git a/...reference/api-standards/api_monitoring.md → ...reference/api-standards/api-monitoring.md b/...reference/api-standards/api_monitoring.md → ...reference/api-standards/api-monitoring.md
@@ -1,8 +1,7 @@
 # API Monitoring
 > These guiding principles will help stability, uptime, and awareness for your applications.
 
-Actuator endpoints let you monitor and interact with your application. For language
-specific tutorials (please see here)[/Development/Tutorials/Monitoring/endpoints]. 
+Actuator endpoints let you monitor and interact with your application. 
 
 ## Monitoring
 Our endpoints for monitoring and info will exist at 
@@ -28,8 +27,8 @@ Example Response:
 {"name":"Fancy Application","status":"UP","details":"Everything seems okay."}
 ````
 
-| Status Text      | Http Status Code                     |
-| ----------- | ------------------------------------ |
-| `UP`        |  200 |
-| `UNKNOWN`   |  200 |
-| `DOWN`      |  503 |
+| Status Text  | Http Status Code |
+|--------------|------------------|
+| `UP`         | 200              |
+| `UNKNOWN`    | 200              |
+| `DOWN`       | 503              |
diff --git a/...reference/api-standards/api_versioning.md → ...reference/api-standards/api-versioning.md b/...reference/api-standards/api_versioning.md → ...reference/api-standards/api-versioning.md
diff --git a/docs/reference/api-standards/dns_naming.md → docs/reference/api-standards/dns-naming.md b/docs/reference/api-standards/dns_naming.md → docs/reference/api-standards/dns-naming.md
diff --git a/...reference/api-standards/error_handling.md → ...reference/api-standards/error-handling.md b/...reference/api-standards/error_handling.md → ...reference/api-standards/error-handling.md
diff --git a/...reference/api-standards/http_standards.md → ...reference/api-standards/http-standards.md b/...reference/api-standards/http_standards.md → ...reference/api-standards/http-standards.md
diff --git a/docs/reference/api-standards/index.md b/docs/reference/api-standards/index.md
@@ -8,11 +8,11 @@ standards for the development of APIs.
 
 The group is focused on exploring the following topics:
 
-* [x] [Standard HTTP Methods & Status Codes](/reference/api-standards/http_standards/)
-* [x] [Standard Naming of Endpoints](/reference/api-standards/restful_endpoint_naming/)
-* [x] [Standard Naming of Domain Names](/reference/api-standards/dns_naming/)
-* [x] Standard structure for response body
-    * [x] Define Scenarios and Categories of Response Errors
-* [x] [Standard for API Versioning and Deprecation](/reference/api-standards/api_versioning/)
-* [x] [OpenAPI Schemas](/reference/api-standards/openapi_schemas/) (FKA Swagger)
+* [x] [Standard HTTP Methods & Status Codes](http-standards/)
+* [x] [Standard Naming of Domain Names](dns-naming/)
+* [x] [Standard Naming of Endpoints](restful-endpoint-naming/)
+* [x] [Define Scenarios and Categories of Response Errors](error-handling/)
+* [x] [OpenAPI Schemas](openapi-schemas/) (FKA Swagger)
+* [x] [Standard for API Versioning and Deprecation](api-versioning/)
+* [x] [Standard for API Monitoring and Health](api-monitoring/)
 * [ ] Testing of all items listed above. 
diff --git a/...eference/api-standards/openapi_schemas.md → ...eference/api-standards/openapi-schemas.md b/...eference/api-standards/openapi_schemas.md → ...eference/api-standards/openapi-schemas.md
diff --git a/.../api-standards/restful_endpoint_naming.md → .../api-standards/restful-endpoint-naming.md b/.../api-standards/restful_endpoint_naming.md → .../api-standards/restful-endpoint-naming.md
diff --git a/mkdocs.yml b/mkdocs.yml
@@ -120,13 +120,13 @@ nav:
       - ReST API: reference/restful-api.md
       - API Standards:
           - reference/api-standards/index.md
-          - HTTP Standards: reference/api-standards/http_standards.md
-          - DNS Naming: reference/api-standards/dns_naming.md
-          - ReSTful Endpoint Naming: reference/api-standards/restful_endpoint_naming.md
-          - OpenAPI Schemas: reference/api-standards/openapi_schemas.md
-          - API Versioning: reference/api-standards/api_versioning.md
-          - API Monitoring: reference/api-standards/api_monitoring.md
-          - Response Errors: reference/api-standards/error_handling.md
+          - HTTP Standards: reference/api-standards/http-standards.md
+          - DNS Naming: reference/api-standards/dns-naming.md
+          - ReSTful Endpoint Naming: reference/api-standards/restful-endpoint-naming.md
+          - Response Errors: reference/api-standards/error-handling.md
+          - OpenAPI Schemas: reference/api-standards/openapi-schemas.md
+          - API Versioning: reference/api-standards/api-versioning.md
+          - API Monitoring: reference/api-standards/api-monitoring.md
       - Available Packages: reference/available-packages.md
       - Available Tools: reference/available-tools.md
 #      - Scientific Workflows: reference/scientific-workflows.md