LAMA.def

Bootstrap:docker
From:amd64/ubuntu:bionic  # 18.04

%files
    requirements.txt requirements.txt

%post
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
apt-get update && DEBIAN_FRONTEND=noninteractive \
apt-get install -yqq git r-base \
python3 python3-pip python3-setuptools python3-wheel \
libgomp1 gcc g++ wget

git clone https://github.com/mpi2/LAMA.git
cd LAMA
# checkout latest commit as of 2024/12/20
git checkout 8ca9e4ef59c67c26f9778d951f05e792536404e3
pip3 install -U pip
# install from pip-tools generated lockfile (linux 3.6.9)
pip3 install --require-hashes --no-deps -r /requirements.txt
wget https://github.com/SuperElastix/elastix/releases/download/4.9.0/elastix-4.9.0-linux.tar.bz2
mkdir elastix
tar xjf elastix-4.9.0-linux.tar.bz2 -C elastix

%environment
LC_ALL=C.UTF-8
LANG=C.UTF-8
LD_LIBRARY_PATH=/LAMA/elastix/lib:$LD_LIBRARY_PATH
PATH=/LAMA/elastix/bin:$PATH