From 5e4106e03cf9522e7ae76398597c12cd297d5261 Mon Sep 17 00:00:00 2001 From: Tomer Yaron-Barir <39324784+yaront@users.noreply.github.com> Date: Thu, 5 Dec 2024 22:39:17 -0500 Subject: [PATCH] Update README --- README.md | 13 ++++++++++--- 1 file changed, 10 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index bf086c7..e412024 100644 --- a/README.md +++ b/README.md @@ -1,16 +1,22 @@
- The Kinase Library + The Kinase Library
# [Click here for The Kinase Library Web Tool](https://kinase-library.phosphosite.org) + + The Kinase Library QR Code + + [![Twitter Follow](https://img.shields.io/twitter/follow/KinaseLibrary?style=social)](https://twitter.com/KinaseLibrary)   [![License: CC BY-NC-SA 3.0](https://img.shields.io/badge/License-CC%20BY--NC--SA%203.0-lightgrey.svg)](https://creativecommons.org/licenses/by-nc-sa/3.0/)   [![PyPI Latest Release](https://img.shields.io/pypi/v/kinase-library.svg)](https://pypi.org/project/kinase-library/) +
+
**The Kinase Library** is a comprehensive Python package for analyzing phosphoproteomics data, focusing on kinase-substrate relationships. It provides tools for kinase prediction, enrichment analysis, and visualization, enabling researchers to gain insights into kinase activities and signaling pathways from phosphoproteomics datasets. @@ -108,14 +114,15 @@ This is the expected output from using the PhosphoProteomics.predict() function. Please cite the following papers when using this package: **For the serine/threonine kinome:** -> Johnson, J. L., Yaron, T. M., Huntsman, E. M., Kerelsky, A., Song, J., Regev, A., ... & Cantley, L. C. (2023). **An atlas of substrate specificities for the human serine/threonine kinome**. _Nature_, 613(7945), 759-766. [http://doi.org/10.1074/mcp.TIR118.000943](https://doi.org/10.1038/s41586-022-05575-3) +> Johnson, J. L., Yaron, T. M., Huntsman, E. M., Kerelsky, A., Song, J., Regev, A., ... & Cantley, L. C. (2023). **An atlas of substrate specificities for the human serine/threonine kinome**. _Nature_, 613(7945), 759-766. [https://doi.org/10.1074/mcp.TIR118.000943](https://doi.org/10.1038/s41586-022-05575-3) **For the tyrosine kinome:** > Yaron-Barir, T. M., Joughin, B. A., Huntsman, E. M., Kerelsky, A., Cizin, D. M., Cohen, B. M., ... & Johnson, J. L. (2024). **The intrinsic substrate specificity of the human tyrosine kinome**. _Nature_, 1-8. [https://doi.org/10.1038/s41586-024-07407-y](https://doi.org/10.1038/s41586-024-07407-y) **If you are using the MEA tool, please also cite:** -> Fang, Z., Liu, X., & Peltz, G. (2023). **GSEApy: a comprehensive package for performing gene set enrichment analysis in Python**. _Bioinformatics_, 39(1), btac757. +> Fang, Z., Liu, X., & Peltz, G. (2023). **GSEApy: a comprehensive package for performing gene set enrichment analysis in Python**. _Bioinformatics_, 39(1), btac757. [https://doi.org/10.1093/bioinformatics/btac757](https://doi.org/10.1093/bioinformatics/btac757) ## License This package is distributed under the Creative Commons License. See `LICENSE` for more information. +