- Week 1: Quick tour of Python + git/GitHub. Mention Anaconda/Bioconda.
- Week 2: "Advanced" HPC tips and tricks.
- Week 3: Rstudio and/or Jupyter notebooks: the "lab notebooks" of computational biology. Publication-quality graphics using ggplot2.
- Week 4: Makefiles and automation.
- Week 5: General issues in dealing with "big data". Out-of-memory analysis using SQLite
Materials may be found here