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Yauhen Yakimovich edited this page Nov 24, 2015 · 3 revisions

How to test JtLib

After playbooks are played successfully these commands should run w/o errors:

tmaps@frontend001:~$ jterator -v /data_tmaps/storage/testdata/150820-Testset-CV/ -p segment init
2015-11-20 11:55:39 | tmlib.cli                      | INFO     | clean up output of previous submission
2015-11-20 11:55:39 | tmlib.cli                      | INFO     | create job descriptions
2015-11-20 11:55:39 | tmlib.jterator.checkers        | INFO     | Pipe description check successful!
2015-11-20 11:55:39 | tmlib.jterator.checkers        | INFO     | Handles descriptions check successful!
2015-11-20 11:55:39 | tmlib.jterator.checkers        | INFO     | Module input/output check successful!
2015-11-20 11:55:39 | tmlib.cli                      | INFO     | write job descriptions to files
memory: high-water mark 0 bytes
tmaps@frontend001:~$ jterator -v /data_tmaps/storage/testdata/150820-Testset-CV/ -p segment run --job 1

    _ _                _
   (_) |_ ___ _ _ __ _| |_ ___ _ _      jterator (0.0.1)
   | |  _/ -_) '_/ _` |  _/ _ \ '_|     Image analysis pipeline engine.
  _/ |\__\___|_| \__,_|\__\___/_|       https://github.com/TissueMAPS/TmLibrary
 |__/

2015-11-20 11:55:46 | tmlib.cli                      | INFO     | read job description from file
2015-11-20 11:55:46 | tmlib.cli                      | INFO     | run job #1
2015-11-20 11:55:46 | tmlib.jterator.checkers        | INFO     | Pipe description check successful!
2015-11-20 11:55:46 | tmlib.jterator.checkers        | INFO     | Handles descriptions check successful!
2015-11-20 11:55:46 | tmlib.jterator.checkers        | INFO     | Module input/output check successful!
2015-11-20 11:55:46 | tmlib.jterator.api             | INFO     | start Matlab engine
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