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environment.yml
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environment.yml
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name: muddy_db
channels:
- fastai
- conda-forge/label/cf202003
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- appdirs=1.4.4=pyh9f0ad1d_0
- argon2-cffi=20.1.0=py36h8f6f2f9_2
- async_generator=1.10=py_0
- attrs=20.3.0=pyhd3deb0d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.1=py_0
- biopython=1.78=py36h8c4c3a4_1
- black=20.8b1=py_1
- bleach=3.2.2=pyh44b312d_0
- brotlipy=0.7.0=py36h8f6f2f9_1001
- ca-certificates=2020.12.5=ha878542_0
- catalogue=1.0.0=py36h5fab9bb_3
- certifi=2020.12.5=py36h5fab9bb_1
- cffi=1.14.4=py36hc120d54_1
- chardet=4.0.0=py36h5fab9bb_1
- click=7.1.2=pyh9f0ad1d_0
- click-spinner=0.1.8=py_0
- colorama=0.4.4=pyh9f0ad1d_0
- cryptography=3.3.1=py36h0a59100_1
- cymem=2.0.5=py36hc4f0c31_1
- cython-blis=0.4.1=py36h8c4c3a4_1
- dataclasses=0.7=pyhe4b4509_6
- dbus=1.13.6=hfdff14a_1
- decorator=4.4.2=py_0
- defusedxml=0.6.0=py_0
- entrypoints=0.3=pyhd8ed1ab_1003
- ete3=3.1.2=pyh9f0ad1d_0
- expat=2.2.9=h9c3ff4c_3
- fastcore=1.2.4=py_0
- fontconfig=2.13.1=hba837de_1004
- freetype=2.10.4=h0708190_1
- gettext=0.19.8.1=h0b5b191_1005
- glib=2.66.4=hc4f0c31_2
- glib-tools=2.66.4=hc4f0c31_2
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=h28cd5cc_2
- hypothesis=5.41.4=pyhd8ed1ab_0
- icu=58.2=hf484d3e_1000
- idna=2.10=pyh9f0ad1d_0
- importlib-metadata=3.4.0=py36h5fab9bb_0
- importlib_metadata=3.4.0=hd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- ipykernel=5.3.4=py36hac0dd68_1
- ipython=7.12.0=py36h5ca1d4c_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.6.3=pyhd3deb0d_0
- jedi=0.18.0=py36h5fab9bb_2
- jinja2=2.11.2=pyh9f0ad1d_0
- jmespath=0.10.0=pyh9f0ad1d_0
- jpeg=9d=h36c2ea0_0
- jsonlines=1.2.0=pyh9f0ad1d_2
- jsonschema=3.2.0=py_2
- jupyter=1.0.0=py_2
- jupyter_client=6.1.11=pyhd8ed1ab_1
- jupyter_console=6.2.0=py_0
- jupyter_core=4.7.0=py36h5fab9bb_1
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_widgets=1.0.0=pyhd8ed1ab_1
- ld_impl_linux-64=2.35.1=hea4e1c9_1
- libblas=3.9.0=7_openblas
- libcblas=3.9.0=7_openblas
- libffi=3.3=h58526e2_2
- libgcc-ng=9.3.0=h2828fa1_18
- libgfortran-ng=9.3.0=hff62375_18
- libgfortran5=9.3.0=hff62375_18
- libglib=2.66.4=h748fe8e_2
- libgomp=9.3.0=h2828fa1_18
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=7_openblas
- libopenblas=0.3.12=pthreads_h4812303_1
- libpng=1.6.37=h21135ba_2
- libsodium=1.0.18=h36c2ea0_1
- libstdcxx-ng=9.3.0=h6de172a_18
- libuuid=2.32.1=h7f98852_1000
- libxcb=1.13=h7f98852_1003
- libxml2=2.9.10=hb55368b_3
- libxslt=1.1.34=hc22bd24_0
- lxml=4.6.2=py36h04a5ba7_1
- markupsafe=1.1.1=py36h8f6f2f9_3
- mistune=0.8.4=py36h8f6f2f9_1003
- more-itertools=8.6.0=pyhd8ed1ab_0
- murmurhash=1.0.5=py36hc4f0c31_0
- mypy=0.790=py_0
- mypy_extensions=0.4.3=py36h5fab9bb_3
- nbclient=0.5.1=py_0
- nbconvert=6.0.7=py36h5fab9bb_3
- nbformat=5.1.2=pyhd8ed1ab_1
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.4.3=pyhd8ed1ab_0
- notebook=6.2.0=py36h5fab9bb_0
- numpy=1.19.5=py36h2aa4a07_1
- openssl=1.1.1i=h7f98852_0
- packaging=20.8=pyhd3deb0d_0
- pandas=1.1.4=py36hd87012b_0
- pandoc=2.11.4=h7f98852_0
- pandocfilters=1.4.2=py_1
- parso=0.8.1=pyhd8ed1ab_0
- pathlib=1.0.1=py36h9f0ad1d_3
- pathspec=0.8.1=pyhd3deb0d_0
- pcre=8.44=he1b5a44_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pip=21.0=pyhd8ed1ab_0
- plac=0.9.6=py36_0
- pluggy=0.13.1=py36h5fab9bb_4
- preshed=3.0.5=py36hc4f0c31_0
- prometheus_client=0.9.0=pyhd3deb0d_0
- prompt-toolkit=3.0.14=pyha770c72_0
- prompt_toolkit=3.0.14=hd8ed1ab_0
- psutil=5.8.0=py36h8f6f2f9_1
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- py=1.10.0=pyhd3deb0d_0
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.7.4=pyhd8ed1ab_0
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyqt=5.9.2=py36hcca6a23_4
- pyrsistent=0.17.3=py36h8f6f2f9_2
- pysocks=1.7.1=py36h5fab9bb_3
- pytest=6.1.2=py36h5fab9bb_0
- pytest-mock=3.3.1=py_0
- python=3.6.12=hffdb5ce_0_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.6=1_cp36m
- pytz=2020.5=pyhd8ed1ab_0
- pyzmq=21.0.1=py36h81c33ee_0
- qt=5.9.7=h5867ecd_1
- qtconsole=5.0.2=pyhd8ed1ab_0
- qtpy=1.9.0=py_0
- readline=8.0=he28a2e2_2
- regex=2020.11.13=py36h8f6f2f9_1
- requests=2.25.1=pyhd3deb0d_0
- send2trash=1.5.0=py_0
- setuptools=49.6.0=py36h5fab9bb_3
- shellingham=1.3.2=py_0
- sip=4.19.8=py36hf484d3e_0
- six=1.15.0=pyh9f0ad1d_0
- sortedcontainers=2.3.0=pyhd8ed1ab_0
- spacy=2.3.2=py36hdb11119_0
- spacy-model-en_core_web_sm=2.2.5=py_0
- sqlite=3.34.0=h74cdb3f_0
- srsly=1.0.5=py36hc4f0c31_0
- terminado=0.9.2=py36h5fab9bb_0
- testpath=0.4.4=py_0
- thinc=7.4.1=py36hdb11119_0
- tk=8.6.10=h21135ba_1
- toml=0.10.2=pyhd8ed1ab_0
- tornado=6.1=py36h8f6f2f9_1
- tqdm=4.56.0=pyhd8ed1ab_0
- traitlets=4.3.3=py36h9f0ad1d_1
- typed-ast=1.4.2=py36h8f6f2f9_0
- typer=0.3.1=py_0
- typing_extensions=3.7.4.3=py_0
- urllib3=1.26.2=pyhd8ed1ab_0
- wasabi=0.8.1=pyh44b312d_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- wheel=0.36.2=pyhd3deb0d_0
- widgetsnbextension=3.5.1=py36h5fab9bb_4
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.12=h516909a_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- zeromq=4.3.3=h58526e2_3
- zipp=3.4.0=py_0
- zlib=1.2.11=h516909a_1010
- pip:
- beautifulsoup4==4.9.3
- dbfread==2.0.4
- hypothesis-csv==0.3.4
- hypothesis-jsonschema==0.18.2
- ijson==2.6.1
- joblib==0.17.0
- meza==0.42.5
- multimethod==1.4
- nmslib==2.0.6
- pybind11==2.6.0
- pygogo==0.13.2
- pysbd==0.3.3
- python-slugify==1.2.6
- pyyaml==5.3.1
- scikit-learn==0.23.2
- scipy==1.5.4
- scispacy==0.3.0
- soupsieve==2.0.1
- threadpoolctl==2.1.0
- unidecode==1.1.1
- xlrd==1.2.0
prefix: /home/ra/anaconda3/envs/muddy_db