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rmhubley authored Oct 2, 2019
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## This pre-release "cluster" branch of the code only performs sequence distance calculations and nearest-neighbor clustering at this time.

# NINJA
Nearly Infinite Neighbor Joining Application

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In addition to generating phylogenies, Ninja can be used to output pairwise distances using several
common sequence distance measures, and cluster sequences using a nearest-neighbor approach.

## This pre-release "cluster" branch of the code only performs sequence distance calculations and nearest-neighbor clustering at this time.

We use a "git flow" workflow. We have two active branches:
* **master** is to become the stable NINJA release branch.
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