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materials/R/tutorial_activity_inference2/tutorial_activity_inference2.ipynb
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{ | ||
"cells": [ | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": { | ||
"deletable": false, | ||
"editable": false, | ||
"nbgrader": { | ||
"cell_type": "markdown", | ||
"checksum": "30fb11e091925d78d9f8e5fea8b8d954", | ||
"grade": false, | ||
"grade_id": "cell-24f9bfcfc0c028b2", | ||
"locked": true, | ||
"schema_version": 3, | ||
"solution": false, | ||
"task": false | ||
}, | ||
"slideshow": { | ||
"slide_type": "slide" | ||
} | ||
}, | ||
"source": [ | ||
"# DSCI 100: Introduction to Data Science\n", | ||
"\n", | ||
"## Tutorial 12 - Bootstrapping and Confidence Intervals" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": { | ||
"deletable": false, | ||
"editable": false, | ||
"nbgrader": { | ||
"cell_type": "markdown", | ||
"checksum": "1c4488762a1c90482585a8fd664723ea", | ||
"grade": false, | ||
"grade_id": "cell-a30d7f12f24db0c2", | ||
"locked": true, | ||
"schema_version": 3, | ||
"solution": false, | ||
"task": false | ||
}, | ||
"slideshow": { | ||
"slide_type": "slide" | ||
} | ||
}, | ||
"source": [ | ||
"First, load the necessary libraries." | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": { | ||
"deletable": false, | ||
"editable": false, | ||
"nbgrader": { | ||
"cell_type": "code", | ||
"checksum": "9d71259d39d0e6aac1e365d392a08265", | ||
"grade": false, | ||
"grade_id": "cell-862ad148734f02d5", | ||
"locked": true, | ||
"schema_version": 3, | ||
"solution": false, | ||
"task": false | ||
}, | ||
"slideshow": { | ||
"slide_type": "fragment" | ||
} | ||
}, | ||
"outputs": [], | ||
"source": [ | ||
"### Run this cell before continuing\n", | ||
"library(tidyverse)\n", | ||
"library(repr)\n", | ||
"library(digest)\n", | ||
"library(infer)\n", | ||
"library(gridExtra)" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": { | ||
"deletable": false, | ||
"editable": false, | ||
"nbgrader": { | ||
"cell_type": "markdown", | ||
"checksum": "d1c3cb6df74096826c48d2e7ceccf32e", | ||
"grade": false, | ||
"grade_id": "cell-7128b905ae8e4202", | ||
"locked": true, | ||
"schema_version": 3, | ||
"solution": false, | ||
"task": false | ||
}, | ||
"slideshow": { | ||
"slide_type": "slide" | ||
} | ||
}, | ||
"source": [ | ||
"Let's revisit our students from last week." | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": { | ||
"deletable": false, | ||
"editable": false, | ||
"nbgrader": { | ||
"cell_type": "code", | ||
"checksum": "4847686358d586fd820d755d21b8097d", | ||
"grade": false, | ||
"grade_id": "cell-411f5c32f74e8702", | ||
"locked": true, | ||
"schema_version": 3, | ||
"solution": false, | ||
"task": false | ||
}, | ||
"slideshow": { | ||
"slide_type": "fragment" | ||
} | ||
}, | ||
"outputs": [], | ||
"source": [ | ||
"# run this cell to simulate a finite population\n", | ||
"set.seed(12341)\n", | ||
"students_pop <- tibble(grade = (rnorm(mean = 70, sd = 8, n = 10000)))\n", | ||
"head(students_pop)" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": { | ||
"deletable": false, | ||
"editable": false, | ||
"nbgrader": { | ||
"cell_type": "markdown", | ||
"checksum": "0a9574261feee64562357b584b045381", | ||
"grade": false, | ||
"grade_id": "cell-8dbbe8cbaae55ef9", | ||
"locked": true, | ||
"schema_version": 3, | ||
"solution": false, | ||
"task": false | ||
} | ||
}, | ||
"source": [ | ||
"To figure out the class average, you ask the 50 classmates in your groupchat. Draw a single sample of size 50 from the population. Drop the `replicate` column by using `ungroup()` followed by `select()`." | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": { | ||
"deletable": false, | ||
"nbgrader": { | ||
"cell_type": "code", | ||
"checksum": "7acd83508797cc62ba1957020fed45d8", | ||
"grade": true, | ||
"grade_id": "cell-1ca3281e90b09d1f", | ||
"locked": false, | ||
"points": 0, | ||
"schema_version": 3, | ||
"solution": true, | ||
"task": false | ||
} | ||
}, | ||
"outputs": [], | ||
"source": [ | ||
"set.seed(12341)\n", | ||
"\n", | ||
"# your code here\n", | ||
"fail() # No Answer - remove if you provide an answer\n", | ||
"\n", | ||
"head(sample)" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": { | ||
"deletable": false, | ||
"editable": false, | ||
"nbgrader": { | ||
"cell_type": "markdown", | ||
"checksum": "21dbbe739216af18fc1d7e04041868ac", | ||
"grade": false, | ||
"grade_id": "cell-0aae1b00b224ee46", | ||
"locked": true, | ||
"schema_version": 3, | ||
"solution": false, | ||
"task": false | ||
} | ||
}, | ||
"source": [ | ||
"You don't know anyone else in the class, so the best way to estimate the class average is by bootstrapping. Take 100 bootstrap samples from the sample you just drew. " | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": { | ||
"deletable": false, | ||
"nbgrader": { | ||
"cell_type": "code", | ||
"checksum": "33de555a5daedc1d6ab623ce8c914a47", | ||
"grade": true, | ||
"grade_id": "cell-2759d44e9c66a7d4", | ||
"locked": false, | ||
"points": 0, | ||
"schema_version": 3, | ||
"solution": true, | ||
"task": false | ||
} | ||
}, | ||
"outputs": [], | ||
"source": [ | ||
"set.seed(12341)\n", | ||
"\n", | ||
"# your code here\n", | ||
"fail() # No Answer - remove if you provide an answer\n", | ||
"\n", | ||
"head(bootstrap)" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": { | ||
"deletable": false, | ||
"editable": false, | ||
"nbgrader": { | ||
"cell_type": "markdown", | ||
"checksum": "0fcf96cbb9af4bea364886d739d745cf", | ||
"grade": false, | ||
"grade_id": "cell-cd6602003e295cda", | ||
"locked": true, | ||
"schema_version": 3, | ||
"solution": false, | ||
"task": false | ||
}, | ||
"slideshow": { | ||
"slide_type": "slide" | ||
} | ||
}, | ||
"source": [ | ||
"Calculate the mean for each set of bootstrap samples and visualize the distribution using a histogram with `binwidth = 0.5`. " | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": { | ||
"deletable": false, | ||
"nbgrader": { | ||
"cell_type": "code", | ||
"checksum": "963dcf1a4501564cdfd6660ab7353cff", | ||
"grade": true, | ||
"grade_id": "cell-1e6adb2a7f93ea0c", | ||
"locked": false, | ||
"points": 0, | ||
"schema_version": 3, | ||
"solution": true, | ||
"task": false | ||
}, | ||
"slideshow": { | ||
"slide_type": "fragment" | ||
} | ||
}, | ||
"outputs": [], | ||
"source": [ | ||
"# your code here\n", | ||
"fail() # No Answer - remove if you provide an answer\n", | ||
"\n", | ||
"bootstrap_dist" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": { | ||
"deletable": false, | ||
"editable": false, | ||
"nbgrader": { | ||
"cell_type": "markdown", | ||
"checksum": "78240c51a927234c8342a509863ae3a3", | ||
"grade": false, | ||
"grade_id": "cell-197073db13b4c44c", | ||
"locked": true, | ||
"schema_version": 3, | ||
"solution": false, | ||
"task": false | ||
}, | ||
"slideshow": { | ||
"slide_type": "slide" | ||
} | ||
}, | ||
"source": [ | ||
"Using this bootstrap distribution, calculate 95% and 80% confidence intervals. Which interval has a wider range?" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": { | ||
"deletable": false, | ||
"nbgrader": { | ||
"cell_type": "code", | ||
"checksum": "dabec1e4157690580a87cd7d1dd186fc", | ||
"grade": true, | ||
"grade_id": "cell-418ddd4dae62425a", | ||
"locked": false, | ||
"points": 0, | ||
"schema_version": 3, | ||
"solution": true, | ||
"task": false | ||
}, | ||
"slideshow": { | ||
"slide_type": "fragment" | ||
} | ||
}, | ||
"outputs": [], | ||
"source": [ | ||
"# your code here\n", | ||
"fail() # No Answer - remove if you provide an answer\n", | ||
"\n", | ||
"bootstrap_95\n", | ||
"bootstrap_80" | ||
] | ||
}, | ||
{ | ||
"cell_type": "markdown", | ||
"metadata": { | ||
"deletable": false, | ||
"editable": false, | ||
"nbgrader": { | ||
"cell_type": "markdown", | ||
"checksum": "8223c38cc1d43b48891ae0b8e528678f", | ||
"grade": false, | ||
"grade_id": "cell-a8c888ca6e7be087", | ||
"locked": true, | ||
"schema_version": 3, | ||
"solution": false, | ||
"task": false | ||
} | ||
}, | ||
"source": [ | ||
"Finally, calculate the mean of the original population. Which of our confidence intervals encapsulate the true population mean?" | ||
] | ||
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"mean(students_pop$grade)" | ||
] | ||
} | ||
], | ||
"metadata": { | ||
"kernelspec": { | ||
"display_name": "R", | ||
"language": "R", | ||
"name": "ir" | ||
}, | ||
"language_info": { | ||
"codemirror_mode": "r", | ||
"file_extension": ".r", | ||
"mimetype": "text/x-r-source", | ||
"name": "R", | ||
"pygments_lexer": "r", | ||
"version": "4.1.3" | ||
} | ||
}, | ||
"nbformat": 4, | ||
"nbformat_minor": 4 | ||
} |
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# clean up data files that students output |
Oops, something went wrong.