Kernel dies in Jupyter Notebook while trying to plot a map

[seizethedata]

Description of the bug

Kernel dies in Jupiter Notebook when trying to plot a map in example notebook

Network data (optional)

If the issue is related to specific network data please provide a link to download the data or the function used to download the data.

Environment

• Operating system: macOS High Sierra v 10.13.6 (17G4015)

• Python version: 3.7.0

• Pandana version: 0.4.1

Paste the code that reproduces the issue here:

fig_kwargs = {'figsize': [20, 20]}
bmap_kwargs = {'suppress_ticks': False, 'resolution': 'h', 'epsg': '26943'}
plot_kwargs = {'cmap': 'BrBG', 's': 8, 'edgecolor': 'none'}

sf_tmp = [-122.524338, 37.707794, -122.34993, 37.834192]
sf_bbox = [sf_tmp[1], sf_tmp[0], sf_tmp[3], sf_tmp[2]]

net.plot(a[1], bbox=sf_bbox, 
         fig_kwargs=fig_kwargs, bmap_kwargs=bmap_kwargs, plot_kwargs=plot_kwargs)

Paste the error message (if applicable):

Assertion failed: (0), function query, file AbstractSTRtree.cpp, line 293.

[sablanchard]

Thanks for the report @seizethedata to better troubleshoot can you post all the packages and versions you have in your environment?

[seizethedata]

@sablanchard sure, here it is:

appdirs==1.4.3
appnope==0.1.0
asn1crypto==0.24.0
backcall==0.1.0
basemap==1.2.0
beautifulsoup4==4.6.3
bleach==2.1.4
branca==0.3.0
brewer2mpl==1.4.1
bs4==0.0.1
carto==1.3.0
cartoframes==0.7.1
certifi==2018.8.13
cffi==1.11.5
chardet==3.0.4
chroma-py==0.1.0.dev1
click==6.7
click-plugins==1.0.3
cligj==0.4.0
colorlover==0.2.1
colour==0.1.5
cryptography==2.3.1
cufflinks==0.14.6
cycler==0.10.0
Cython==0.28.5
decorator==4.3.0
descartes==1.1.0
entrypoints==0.2.3
Fiona==1.7.13
Flask==1.0.2
folium==0.6.0
future==0.15.2
GeoAlchemy2==0.4.2
geocoder==1.38.1
geographiclib==1.49
geojson==2.4.0
geopandas==0.4.0
geopy==1.16.0
geos==0.2.1
html5lib==1.0.1
idna==2.7
ipykernel==4.8.2
ipyleaflet==0.9.0
ipython==6.5.0
ipython-genutils==0.2.0
ipython-magic-folium==0.0.0
ipywidgets==7.4.0
itsdangerous==0.24
jedi==0.12.1
Jinja2==2.10
jsonschema==2.6.0
jupyter-client==5.2.3
jupyter-core==4.4.0
kiwisolver==1.0.1
lxml==4.2.4
mapboxgl==0.8.0
MarkupSafe==1.0
matplotlib==2.2.3
mistune==0.8.3
munch==2.3.2
nbconvert==5.3.1
nbformat==4.4.0
ndg-httpsclient==0.5.1
networkx==2.1
nose==1.3.7
notebook==5.6.0
numexpr==2.6.9
numpy==1.15.1
osmnet==0.1.5
osmnx==0.8.1
pandana==0.4.1
pandas==0.23.4
pandocfilters==1.4.2
parso==0.3.1
pexpect==4.6.0
pickleshare==0.7.4
Pillow==5.3.0
plotly==3.4.2
postgis==1.0.4
prometheus-client==0.3.1
prompt-toolkit==1.0.15
ptyprocess==0.6.0
pyasn1==0.4.4
pychrone==0.0.3
pycparser==2.18
Pygments==2.2.0
pyOpenSSL==18.0.0
pyparsing==2.2.0
pyproj==1.9.5.1
pyrestcli==0.6.6
PySAL==1.14.4.post2
pyshp==2.0.1
python-dateutil==2.7.3
pytz==2018.5
pyzmq==17.1.2
ratelim==0.1.6
requests==2.19.1
retrying==1.3.3
Rtree==0.8.3
scikit-learn==0.20.2
scipy==1.1.0
seaborn==0.9.0
selenium==3.14.0
Send2Trash==1.5.0
Shapely==1.6.4.post2
simplegeneric==0.8.1
six==1.11.0
SQLAlchemy==1.2.11
tables==3.4.4
terminado==0.8.1
testpath==0.3.1
tornado==5.1
tqdm==4.25.0
traitlets==4.3.2
traittypes==0.2.1
urllib3==1.23
wcwidth==0.1.7
webcolors==1.8.1
webencodings==0.5.1
Werkzeug==0.14.1
widgetsnbextension==3.4.0
xarray==0.10.8
xmltodict==0.11.0

[absudabsu]

Was this ever solved? I am thinking this is an issue with geos ?