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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]

Added

  • styles/ directory: Broke up the App.css file into smaller components
  • Responsive styles that dynamically render based on screen size
  • Reformatted autocomplete results
  • Trimmed down autocomplete results to display top 15 results, instead of hundreds
  • Hover effects over buttons for more responsiveness
  • mantine component library components
  • frontend is switched to vite+react, recommended by mantine library
  • Application now uses Vite build tool
  • Added new visuals for loading status
  • Ability to cycle through species images
  • Wikipedia page link for species
  • Total number of observation for species
  • Short wiki summary for species
  • Added tooltip for help and cycle image buttons

Updated

  • package-lock.json: Lock file was updated when ran with npm i, removal of testing libraries for react suggest a change in react's dependencies.
  • README updated to reflect new application url and instruction on running Vite
  • Converted old JS components into JSX components and updated components with mantine counterparts
  • frontend dockerfile to build vite before serving
  • Broke up functions in App.js into separate functions in utils.js, makes it more readable

Removed

  • old css files that are now unused
  • loadingbarstatus.js, now we use loading overlays and display errors with alerts

[1.0.0] - 2024-08-12

Added

  • Instruction Component: Added a new component with instructions for using the app, accessible via an expandable/collapsible button.
  • Load Annotation Functionality: Introduced the ability to load the last saved annotation for the currently selected taxon.
  • Added loading bar to the application
  • Added error handling for invalid taxa names, that caused the server to crash
  • Added DB functionality for postgres, and any other compatible DB, using sqlalchemy
  • Added postgres docker image that builds with docker compose along with other services
  • Functionality to use the state of the toggle switch.
  • Toggle slider for presence/absence data.
  • A selection/drawing tool is available on the map, allowing users to draw either a rectangle or a polygon.
    • A toggle allows users to switch between the types of hexagons (presence or absence).
    • Users can:
      • Draw a polygon to add annotation hexagons to the map.
      • Draw a rectangle to remove annotation hexagons from the map.
  • Functionality to save presence/absence annotation data to the database.
  • Incorporated prediction database framework, tables with hexagons indexes and scores.
  • generate_prediction now retrieves predictions from database, or generates them and stores them if not in database.
  • Functionality to change threshold in the UI
  • Added iNaturalist Observations layer to the map component, which takes user observations from the iNaturalist tiles server in the same format as it is shown on the iNaturalist website.
  • docker file to set up the github actions and create a frontend and backend image to push to docker hub.

Updated

  • Clear Annotation Functionality: The "Clear Annotation" button now clears the current annotation from the map, allowing users to start fresh without saving changes to the database.
  • Generate Prediction Logic: Always sets "Prediction Hexagon IDs" as the starting point for annotations.
  • Default Map Layer Settings: The "Prediction Hexagons" map layer is now unchecked by default.
  • Sidebar Component: Made the Model field read-only for better clarity.
  • Persistent storage with DBs
  • Save and clear buttons now operate on the database rather than files in directory
  • Updated README with new instructions and guides on how to work with database for development
  • save_annotation method to save annotation with type.
  • load_annotation method to load the latest annotation for the given taxa_name and taxa_id.
  • Updated colors in the app to be accessible to colorblind people using the Bang Wong palette.
  • Update the file that stores taxa_names to use the common names in the drop-down menu.
  • Update the title and description in index.html.

Fixed

  • The Taxa Name info box now correctly clears when an invalid taxa ID is entered.
  • After changing the Taxa in the drop-down menu, the layers with predictions and annotations on the map are now cleared.

[0.1.0] - 2024-07-18

Added

  • CHANGELOG