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modules.json
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modules.json
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{
"name": "nf-core/mycosnp",
"homePage": "https://github.com/nf-core/mycosnp",
"repos": {
"nf-core/modules": {
"bcftools/consensus": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"bcftools/index": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"bcftools/query": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"bcftools/view": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"bedtools/maskfasta": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"bwa/index": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"bwa/mem": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"custom/dumpsoftwareversions": {
"git_sha": "20d8250d9f39ddb05dfb437603aaf99b5c0b2b41"
},
"faqcs": {
"git_sha": "2cd502a236aec1a1eecbe1f9189af3414efbf1d8"
},
"fastqc": {
"git_sha": "9d0cad583b9a71a6509b754fdf589cbfbed08961"
},
"fasttree": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"gatk4/combinegvcfs": {
"git_sha": "a25423dbb974e2e69268b5cdbc12e5bc1558e053"
},
"gatk4/genotypegvcfs": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"gatk4/haplotypecaller": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"gatk4/selectvariants": {
"git_sha": "640031762334fd1d534d667c2e1a982c5513a7aa"
},
"gatk4/variantfiltration": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"iqtree": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"multiqc": {
"git_sha": "20d8250d9f39ddb05dfb437603aaf99b5c0b2b41"
},
"mummer": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"nucmer": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"picard/addorreplacereadgroups": {
"git_sha": "a0d91e4a93daab335e8dbae31b345188c120e0a0"
},
"picard/cleansam": {
"git_sha": "8a20253f4028133b589c2c169aaa68a5a7fe848d"
},
"picard/createsequencedictionary": {
"git_sha": "62e5d1f0b38367d628e6b4c32b45d462f2c0b325"
},
"picard/fixmateinformation": {
"git_sha": "f655e5dea2e25f403e23fb6dfdc33cc538666769"
},
"picard/markduplicates": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"qualimap/bamqc": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"rapidnj": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"raxmlng": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"samtools/faidx": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"samtools/flagstat": {
"git_sha": "1ad73f1b2abdea9398680d6d20014838135c9a35"
},
"samtools/idxstats": {
"git_sha": "1ad73f1b2abdea9398680d6d20014838135c9a35"
},
"samtools/index": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"samtools/sort": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"samtools/stats": {
"git_sha": "1ad73f1b2abdea9398680d6d20014838135c9a35"
},
"samtools/view": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"seqkit/pair": {
"git_sha": "4c59984d7bcc772598ba44fb8289051352c7a6c6"
},
"seqkit/replace": {
"git_sha": "24f0bdd14ec32e0114aa6ee5337ddbd490ffd570"
},
"seqtk/rename": {
"git_sha": "a69faefee8ff63565629a2b6dfc40e08f4690b80"
},
"seqtk/sample": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"seqtk/seq": {
"git_sha": "1016c9bd1a7b23e31b8215b8c33095e733080735"
},
"snpdists": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
}
}
}
}