Gene Ontology Networks #1063
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name: Gene Ontology Networks | |
on: | |
push: | |
branches: [ main ] | |
schedule: | |
- cron: '0 0 * * *' # This will happen once a day at 00 hours. | |
jobs: | |
build: | |
runs-on: Ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Container | |
run: docker pull rocker/tidyverse:4.1.0 | |
################################################################## | |
# YOU ONLY NEED TO CHANGE THIS BIT ------------------------------- | |
- name: Render | |
run: | | |
cd 04-go-networks | |
docker run -v$(pwd):/home/report -w/home/report \ | |
rocker/tidyverse:4.1.0 \ | |
Rscript -e 'system("apt-get update && apt-get install -y --no-install-recommends libglpk-dev");install.packages("netplot");rmarkdown::render("README.Rmd")' | |
################################################################## | |
- name: Commit results | |
run: | | |
cd 04-go-networks | |
git add README_files/figure-gfm/* | |
git config --local user.name "$GITHUB_ACTOR" | |
git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | |
git commit -a -m 'Updating the GO Networks report' || echo Nothing has changed | |
git push origin || echo "No changes to commit" |