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16  } else {
17 
18  for (const auto& a : Array->el_ji[i])
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19  vec.push_back(std::make_pair<size_t, Cell<Cell_Type>>(a.first, *(a.second)));
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diff --git a/class_phylo_rule_dyn_data-members.html b/class_phylo_rule_dyn_data-members.html index 6752ad26b..5052458ca 100644 --- a/class_phylo_rule_dyn_data-members.html +++ b/class_phylo_rule_dyn_data-members.html @@ -112,7 +112,7 @@ diff --git a/class_phylo_rule_dyn_data.html b/class_phylo_rule_dyn_data.html index 6820dcb64..e90cb8b8c 100644 --- a/class_phylo_rule_dyn_data.html +++ b/class_phylo_rule_dyn_data.html @@ -330,7 +330,7 @@

    - +
diff --git a/class_power_set-members.html b/class_power_set-members.html index 6f789dcc9..78e715831 100644 --- a/class_power_set-members.html +++ b/class_power_set-members.html @@ -129,7 +129,7 @@ diff --git a/class_power_set.html b/class_power_set.html index a526a5e30..300b7b1e5 100644 --- a/class_power_set.html +++ b/class_power_set.html @@ -845,7 +845,7 @@

    - +
diff --git a/class_progress-members.html b/class_progress-members.html index b2a083ff1..2365c4378 100644 --- a/class_progress-members.html +++ b/class_progress-members.html @@ -108,7 +108,7 @@ diff --git a/class_progress.html b/class_progress.html index cbdb54f54..c253701ca 100644 --- a/class_progress.html +++ b/class_progress.html @@ -250,7 +250,7 @@

    - +
diff --git a/class_rule-members.html b/class_rule-members.html index f4de19f3b..22bd6dac2 100644 --- a/class_rule-members.html +++ b/class_rule-members.html @@ -113,7 +113,7 @@ diff --git a/class_rule.html b/class_rule.html index 9ff53b1dc..2be65e9dd 100644 --- a/class_rule.html +++ b/class_rule.html @@ -452,7 +452,7 @@

    - +
diff --git a/class_rules-members.html b/class_rules-members.html index 2dabdf25f..0e36774b2 100644 --- a/class_rules-members.html +++ b/class_rules-members.html @@ -117,7 +117,7 @@ diff --git a/class_rules.html b/class_rules.html index d415dd507..850e892d4 100644 --- a/class_rules.html +++ b/class_rules.html @@ -617,7 +617,7 @@

    - +
diff --git a/class_stats_counter-members.html b/class_stats_counter-members.html index e78ed740a..278cbb56f 100644 --- a/class_stats_counter-members.html +++ b/class_stats_counter-members.html @@ -118,7 +118,7 @@ diff --git a/class_stats_counter.html b/class_stats_counter.html index 75285d5b3..5f6d5e1f7 100644 --- a/class_stats_counter.html +++ b/class_stats_counter.html @@ -519,7 +519,7 @@

    - +
diff --git a/class_support-members.html b/class_support-members.html index f44ddeb71..50cd36841 100644 --- a/class_support-members.html +++ b/class_support-members.html @@ -143,7 +143,7 @@ diff --git a/class_support.html b/class_support.html index 606d2d50c..8a154578c 100644 --- a/class_support.html +++ b/class_support.html @@ -1277,7 +1277,7 @@

    - +
diff --git a/classes.html b/classes.html index 5a7e47e10..29907fd21 100644 --- a/classes.html +++ b/classes.html @@ -140,7 +140,7 @@ diff --git a/col-bones_8hpp.html b/col-bones_8hpp.html index a5335e58a..d30a3d469 100644 --- a/col-bones_8hpp.html +++ b/col-bones_8hpp.html @@ -104,7 +104,7 @@ diff --git a/col-bones_8hpp_source.html b/col-bones_8hpp_source.html index 1c55b728e..06a372520 100644 --- a/col-bones_8hpp_source.html +++ b/col-bones_8hpp_source.html @@ -159,7 +159,7 @@ diff --git a/counters-bones_8hpp.html b/counters-bones_8hpp.html index e855a70fa..15413addf 100644 --- a/counters-bones_8hpp.html +++ b/counters-bones_8hpp.html @@ -125,7 +125,7 @@ diff --git a/counters-bones_8hpp_source.html b/counters-bones_8hpp_source.html index e8603b81a..0e84632dc 100644 --- a/counters-bones_8hpp_source.html +++ b/counters-bones_8hpp_source.html @@ -258,7 +258,7 @@ diff --git a/counters-meat_8hpp.html b/counters-meat_8hpp.html index 1d59e642b..7a081b47e 100644 --- a/counters-meat_8hpp.html +++ b/counters-meat_8hpp.html @@ -1352,7 +1352,7 @@

Initial value:
{
-
+ @@ -1568,7 +1568,7 @@

    - +

diff --git a/counters-meat_8hpp_source.html b/counters-meat_8hpp_source.html index 5c97fd109..a53423075 100644 --- a/counters-meat_8hpp_source.html +++ b/counters-meat_8hpp_source.html @@ -281,7 +281,7 @@
185 )
186 {
187 
- +
188  data.emplace_back(Counter<Array_Type,Data_Type>(
189  count_fun_,
190  init_fun_,
191  hasher_fun_,
@@ -415,7 +415,7 @@ diff --git a/defm-bones_8hpp.html b/defm-bones_8hpp.html index e8806cf6b..c0b50f290 100644 --- a/defm-bones_8hpp.html +++ b/defm-bones_8hpp.html @@ -121,7 +121,7 @@ diff --git a/defm-bones_8hpp_source.html b/defm-bones_8hpp_source.html index b04069f18..449e897de 100644 --- a/defm-bones_8hpp_source.html +++ b/defm-bones_8hpp_source.html @@ -216,7 +216,7 @@ diff --git a/defm-meat_8hpp.html b/defm-meat_8hpp.html index 628435338..9a13e5a3c 100644 --- a/defm-meat_8hpp.html +++ b/defm-meat_8hpp.html @@ -213,7 +213,7 @@

    - +
diff --git a/defm-meat_8hpp_source.html b/defm-meat_8hpp_source.html index 85ddaf052..cc85d45e2 100644 --- a/defm-meat_8hpp_source.html +++ b/defm-meat_8hpp_source.html @@ -299,10 +299,10 @@
201 
202  // Creating the names
203  for (auto i = 0u; i < Y_ncol; ++i)
-
204  Y_names.push_back(std::string("y") + std::to_string(i));
+
204  Y_names.emplace_back(std::string("y") + std::to_string(i));
205 
206  for (auto i = 0u; i < X_ncol; ++i)
-
207  X_names.push_back(std::string("X") + std::to_string(i));
+
207  X_names.emplace_back(std::string("X") + std::to_string(i));
208 
209  return;
210 
@@ -592,7 +592,7 @@ diff --git a/defm-types_8hpp.html b/defm-types_8hpp.html index 5ee310532..ac70a9a86 100644 --- a/defm-types_8hpp.html +++ b/defm-types_8hpp.html @@ -171,7 +171,7 @@

    - +
diff --git a/defm-types_8hpp_source.html b/defm-types_8hpp_source.html index 039f8dd3e..3c3ca47ca 100644 --- a/defm-types_8hpp_source.html +++ b/defm-types_8hpp_source.html @@ -306,7 +306,7 @@ diff --git a/defm_2counters_8hpp.html b/defm_2counters_8hpp.html index 626a6e103..39d250e03 100644 --- a/defm_2counters_8hpp.html +++ b/defm_2counters_8hpp.html @@ -327,7 +327,7 @@

    - +
diff --git a/defm_2counters_8hpp_source.html b/defm_2counters_8hpp_source.html index 4cbf95d05..0aced4556 100644 --- a/defm_2counters_8hpp_source.html +++ b/defm_2counters_8hpp_source.html @@ -550,7 +550,7 @@
490  #ifdef BARRY_WITH_LATEX
491  name += ") -> (";
492  #else
-
493  name += "} \u21E8 {";
+
493  name += std::string("}") + u8"\u21E8" + std::string("{");
494  #endif
495  else
496  #ifdef BARRY_WITH_LATEX
@@ -797,7 +797,7 @@ diff --git a/defm_8hpp.html b/defm_8hpp.html index 0dac9c476..8ae612a1a 100644 --- a/defm_8hpp.html +++ b/defm_8hpp.html @@ -133,7 +133,7 @@ diff --git a/defm_8hpp_source.html b/defm_8hpp_source.html index b7164f376..835db1d95 100644 --- a/defm_8hpp_source.html +++ b/defm_8hpp_source.html @@ -126,7 +126,7 @@ diff --git a/dir_000001_000002.html b/dir_000001_000002.html index 4da485fd1..4317e2312 100644 --- a/dir_000001_000002.html +++ b/dir_000001_000002.html @@ -98,7 +98,7 @@

barry → counters Relation

diff --git a/dir_000003_000004.html b/dir_000003_000004.html index 26116dee9..989537f15 100644 --- a/dir_000003_000004.html +++ b/dir_000003_000004.html @@ -98,7 +98,7 @@

models → defm Relation

    - +
diff --git a/dir_000003_000005.html b/dir_000003_000005.html index ddeba0dd6..31277ee0b 100644 --- a/dir_000003_000005.html +++ b/dir_000003_000005.html @@ -98,7 +98,7 @@

models → geese Relation

    - +
diff --git a/dir_488ec4010567cc6d95c62bdcb57a6d3e.html b/dir_488ec4010567cc6d95c62bdcb57a6d3e.html index 6f37c99d9..feff87362 100644 --- a/dir_488ec4010567cc6d95c62bdcb57a6d3e.html +++ b/dir_488ec4010567cc6d95c62bdcb57a6d3e.html @@ -130,7 +130,7 @@ diff --git a/dir_6e63e3665115632dc5d61b2d6d6c3354.html b/dir_6e63e3665115632dc5d61b2d6d6c3354.html index 17f7c6b35..2daa71c20 100644 --- a/dir_6e63e3665115632dc5d61b2d6d6c3354.html +++ b/dir_6e63e3665115632dc5d61b2d6d6c3354.html @@ -203,7 +203,7 @@ diff --git a/dir_b3150c389b0f5b078392750f1ae70361.html b/dir_b3150c389b0f5b078392750f1ae70361.html index 60ca1f9fe..e53dd91db 100644 --- a/dir_b3150c389b0f5b078392750f1ae70361.html +++ b/dir_b3150c389b0f5b078392750f1ae70361.html @@ -110,7 +110,7 @@ diff --git a/dir_c5954a04c87570f0664da134464d5428.html b/dir_c5954a04c87570f0664da134464d5428.html index ceddb4f93..f9ce7b903 100644 --- a/dir_c5954a04c87570f0664da134464d5428.html +++ b/dir_c5954a04c87570f0664da134464d5428.html @@ -134,7 +134,7 @@ diff --git a/dir_d44c64559bbebec7f509842c48db8b23.html b/dir_d44c64559bbebec7f509842c48db8b23.html index ad2a926fe..bd1391b5a 100644 --- a/dir_d44c64559bbebec7f509842c48db8b23.html +++ b/dir_d44c64559bbebec7f509842c48db8b23.html @@ -117,7 +117,7 @@ diff --git a/dir_d7a554d3e09ed8456d56450fe8436947.html b/dir_d7a554d3e09ed8456d56450fe8436947.html index 56ada8463..87d0ba95f 100644 --- a/dir_d7a554d3e09ed8456d56450fe8436947.html +++ b/dir_d7a554d3e09ed8456d56450fe8436947.html @@ -116,7 +116,7 @@ diff --git a/files.html b/files.html index c268d1de3..2ca1439ed 100644 --- a/files.html +++ b/files.html @@ -173,7 +173,7 @@ diff --git a/flock-bones_8hpp.html b/flock-bones_8hpp.html index 980631187..9e745431a 100644 --- a/flock-bones_8hpp.html +++ b/flock-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/flock-bones_8hpp_source.html b/flock-bones_8hpp_source.html index b76378d24..fbd4adc16 100644 --- a/flock-bones_8hpp_source.html +++ b/flock-bones_8hpp_source.html @@ -196,7 +196,7 @@ diff --git a/flock-meat_8hpp.html b/flock-meat_8hpp.html index dd5b0b1d2..037c99e74 100644 --- a/flock-meat_8hpp.html +++ b/flock-meat_8hpp.html @@ -113,7 +113,7 @@ diff --git a/flock-meat_8hpp_source.html b/flock-meat_8hpp_source.html index dad796e36..fe6f5987d 100644 --- a/flock-meat_8hpp_source.html +++ b/flock-meat_8hpp_source.html @@ -128,7 +128,7 @@
30  }
31 
32  // Generating the Geese object
-
33  dat.push_back(Geese(annotations, geneid, parent, duplication));
+
33  dat.emplace_back(Geese(annotations, geneid, parent, duplication));
34 
35  if (dat.size() == 1u)
36  this->nfunctions = dat[0].nfuns();
@@ -450,7 +450,7 @@ diff --git a/formula_8hpp.html b/formula_8hpp.html index 857740eaf..8153a088d 100644 --- a/formula_8hpp.html +++ b/formula_8hpp.html @@ -206,7 +206,7 @@

Transition effects

diff --git a/formula_8hpp_source.html b/formula_8hpp_source.html index 71c957520..15cad04c3 100644 --- a/formula_8hpp_source.html +++ b/formula_8hpp_source.html @@ -288,7 +288,7 @@ diff --git a/freqtable_8hpp.html b/freqtable_8hpp.html index 6cc8bce61..2daad3471 100644 --- a/freqtable_8hpp.html +++ b/freqtable_8hpp.html @@ -122,7 +122,7 @@ diff --git a/freqtable_8hpp_source.html b/freqtable_8hpp_source.html index 09f7616e8..03c0ffd9b 100644 --- a/freqtable_8hpp_source.html +++ b/freqtable_8hpp_source.html @@ -357,7 +357,7 @@ diff --git a/functions.html b/functions.html index 3600e7206..bdb868e3d 100644 --- a/functions.html +++ b/functions.html @@ -159,7 +159,7 @@

- a -