diff --git a/_r_e_a_d_m_e_8md.html b/_r_e_a_d_m_e_8md.html index dfad221dc..295368d05 100644 --- a/_r_e_a_d_m_e_8md.html +++ b/_r_e_a_d_m_e_8md.html @@ -102,7 +102,7 @@ diff --git a/annotated.html b/annotated.html index aa4c6b373..c20321c95 100644 --- a/annotated.html +++ b/annotated.html @@ -147,7 +147,7 @@ diff --git a/barray-bones_8hpp.html b/barray-bones_8hpp.html index 92618da39..04dff3af7 100644 --- a/barray-bones_8hpp.html +++ b/barray-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/barray-bones_8hpp_source.html b/barray-bones_8hpp_source.html index 7c4e920bc..0171e4439 100644 --- a/barray-bones_8hpp_source.html +++ b/barray-bones_8hpp_source.html @@ -328,7 +328,7 @@ diff --git a/barray-iterator_8hpp.html b/barray-iterator_8hpp.html index 853414813..f72ea7832 100644 --- a/barray-iterator_8hpp.html +++ b/barray-iterator_8hpp.html @@ -112,7 +112,7 @@ diff --git a/barray-iterator_8hpp_source.html b/barray-iterator_8hpp_source.html index 50a671724..a0f7d32b1 100644 --- a/barray-iterator_8hpp_source.html +++ b/barray-iterator_8hpp_source.html @@ -148,7 +148,7 @@ diff --git a/barray-meat-operators_8hpp.html b/barray-meat-operators_8hpp.html index 36c60016a..ee9a2899e 100644 --- a/barray-meat-operators_8hpp.html +++ b/barray-meat-operators_8hpp.html @@ -576,7 +576,7 @@

diff --git a/barray-meat-operators_8hpp_source.html b/barray-meat-operators_8hpp_source.html index 9b39cbe23..f4afe7507 100644 --- a/barray-meat-operators_8hpp_source.html +++ b/barray-meat-operators_8hpp_source.html @@ -240,7 +240,7 @@ diff --git a/barray-meat_8hpp.html b/barray-meat_8hpp.html index 5ee67c673..08a571780 100644 --- a/barray-meat_8hpp.html +++ b/barray-meat_8hpp.html @@ -164,7 +164,7 @@

  • include
  • barry
  • barray-meat.hpp
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barray-meat_8hpp_source.html b/barray-meat_8hpp_source.html index 461d69432..87ef7c744 100644 --- a/barray-meat_8hpp_source.html +++ b/barray-meat_8hpp_source.html @@ -1441,7 +1441,7 @@ diff --git a/barraycell-bones_8hpp.html b/barraycell-bones_8hpp.html index 98a95e39b..2292bbf4e 100644 --- a/barraycell-bones_8hpp.html +++ b/barraycell-bones_8hpp.html @@ -123,7 +123,7 @@ diff --git a/barraycell-bones_8hpp_source.html b/barraycell-bones_8hpp_source.html index f57ad18d2..5558e7bf8 100644 --- a/barraycell-bones_8hpp_source.html +++ b/barraycell-bones_8hpp_source.html @@ -204,7 +204,7 @@ diff --git a/barraycell-meat_8hpp.html b/barraycell-meat_8hpp.html index bae6d397e..40da3454d 100644 --- a/barraycell-meat_8hpp.html +++ b/barraycell-meat_8hpp.html @@ -113,7 +113,7 @@ diff --git a/barraycell-meat_8hpp_source.html b/barraycell-meat_8hpp_source.html index eb338d046..1ded8ca31 100644 --- a/barraycell-meat_8hpp_source.html +++ b/barraycell-meat_8hpp_source.html @@ -220,7 +220,7 @@ diff --git a/barraydense-bones_8hpp.html b/barraydense-bones_8hpp.html index be270980a..fef154694 100644 --- a/barraydense-bones_8hpp.html +++ b/barraydense-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/barraydense-bones_8hpp_source.html b/barraydense-bones_8hpp_source.html index 559d6d0fe..e6c934ea2 100644 --- a/barraydense-bones_8hpp_source.html +++ b/barraydense-bones_8hpp_source.html @@ -340,7 +340,7 @@ diff --git a/barraydense-meat-operators_8hpp.html b/barraydense-meat-operators_8hpp.html index e63cee334..4417a8148 100644 --- a/barraydense-meat-operators_8hpp.html +++ b/barraydense-meat-operators_8hpp.html @@ -481,7 +481,7 @@

  • include
  • barry
  • barraydense-meat-operators.hpp
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barraydense-meat-operators_8hpp_source.html b/barraydense-meat-operators_8hpp_source.html index e299c7fff..f4ce52b1a 100644 --- a/barraydense-meat-operators_8hpp_source.html +++ b/barraydense-meat-operators_8hpp_source.html @@ -231,7 +231,7 @@ diff --git a/barraydense-meat_8hpp.html b/barraydense-meat_8hpp.html index 6b95d3af4..e2937de57 100644 --- a/barraydense-meat_8hpp.html +++ b/barraydense-meat_8hpp.html @@ -252,7 +252,7 @@

  • include
  • barry
  • barraydense-meat.hpp
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barraydense-meat_8hpp_source.html b/barraydense-meat_8hpp_source.html index 7dc5843ff..95db75864 100644 --- a/barraydense-meat_8hpp_source.html +++ b/barraydense-meat_8hpp_source.html @@ -547,10 +547,10 @@
449  if (check_bounds)
450  out_of_range(0u, i);
451 
-
452  #if defined(__OPENMP) || defined(_OPENMP)
-
453  #pragma omp simd
-
454  #endif
-
455  #pragma code_align 32
+
452  #pragma code_align 32
+
453  #if defined(__OPENMP) || defined(_OPENMP)
+
454  #pragma omp simd
+
455  #endif
456  for (size_t j = 0u; j < N; ++j)
457  x->operator[](j) = el[POS(j, i)];//this->get_cell(iter->first, i, false);
458 
@@ -1190,7 +1190,7 @@ diff --git a/barraydensecell-bones_8hpp.html b/barraydensecell-bones_8hpp.html index 5cb4673e8..bcd9916fa 100644 --- a/barraydensecell-bones_8hpp.html +++ b/barraydensecell-bones_8hpp.html @@ -158,7 +158,7 @@

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    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barraydensecell-bones_8hpp_source.html b/barraydensecell-bones_8hpp_source.html index 78508c77a..a2f25267a 100644 --- a/barraydensecell-bones_8hpp_source.html +++ b/barraydensecell-bones_8hpp_source.html @@ -189,7 +189,7 @@ diff --git a/barraydensecell-meat_8hpp.html b/barraydensecell-meat_8hpp.html index 28a96f1ba..4458e0870 100644 --- a/barraydensecell-meat_8hpp.html +++ b/barraydensecell-meat_8hpp.html @@ -152,7 +152,7 @@

  • include
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    • -
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    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barraydensecell-meat_8hpp_source.html b/barraydensecell-meat_8hpp_source.html index f9c1e1a3c..04e1f390d 100644 --- a/barraydensecell-meat_8hpp_source.html +++ b/barraydensecell-meat_8hpp_source.html @@ -235,7 +235,7 @@ diff --git a/barraydensecol-bones_8hpp.html b/barraydensecol-bones_8hpp.html index c66d0a62e..811a32bdc 100644 --- a/barraydensecol-bones_8hpp.html +++ b/barraydensecol-bones_8hpp.html @@ -216,7 +216,7 @@

  • include
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  • barraydensecol-bones.hpp
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barraydensecol-bones_8hpp_source.html b/barraydensecol-bones_8hpp_source.html index ec93da1ea..89018765f 100644 --- a/barraydensecol-bones_8hpp_source.html +++ b/barraydensecol-bones_8hpp_source.html @@ -246,7 +246,7 @@ diff --git a/barraydenserow-bones_8hpp.html b/barraydenserow-bones_8hpp.html index 04aa68ce0..7d47d10b7 100644 --- a/barraydenserow-bones_8hpp.html +++ b/barraydenserow-bones_8hpp.html @@ -216,7 +216,7 @@

  • include
  • barry
  • barraydenserow-bones.hpp
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barraydenserow-bones_8hpp_source.html b/barraydenserow-bones_8hpp_source.html index ebc4895c4..8b4caef7e 100644 --- a/barraydenserow-bones_8hpp_source.html +++ b/barraydenserow-bones_8hpp_source.html @@ -257,7 +257,7 @@ diff --git a/barrayrow-bones_8hpp.html b/barrayrow-bones_8hpp.html index 27b6464b8..d90c09897 100644 --- a/barrayrow-bones_8hpp.html +++ b/barrayrow-bones_8hpp.html @@ -114,7 +114,7 @@ diff --git a/barrayrow-bones_8hpp_source.html b/barrayrow-bones_8hpp_source.html index 50d88ec38..e23c193bf 100644 --- a/barrayrow-bones_8hpp_source.html +++ b/barrayrow-bones_8hpp_source.html @@ -195,7 +195,7 @@ diff --git a/barrayrow-meat_8hpp.html b/barrayrow-meat_8hpp.html index 2aa719a08..f057d0b22 100644 --- a/barrayrow-meat_8hpp.html +++ b/barrayrow-meat_8hpp.html @@ -350,7 +350,7 @@

  • include
  • barry
  • barrayrow-meat.hpp
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barrayrow-meat_8hpp_source.html b/barrayrow-meat_8hpp_source.html index c58ad46be..58777038c 100644 --- a/barrayrow-meat_8hpp_source.html +++ b/barrayrow-meat_8hpp_source.html @@ -229,7 +229,7 @@ diff --git a/barrayvector-bones_8hpp.html b/barrayvector-bones_8hpp.html index 1de5308eb..f2cc9f73f 100644 --- a/barrayvector-bones_8hpp.html +++ b/barrayvector-bones_8hpp.html @@ -115,7 +115,7 @@ diff --git a/barrayvector-bones_8hpp_source.html b/barrayvector-bones_8hpp_source.html index f1c58e806..3c59619e9 100644 --- a/barrayvector-bones_8hpp_source.html +++ b/barrayvector-bones_8hpp_source.html @@ -232,7 +232,7 @@ diff --git a/barrayvector-meat_8hpp.html b/barrayvector-meat_8hpp.html index cc5268925..5b434d3d4 100644 --- a/barrayvector-meat_8hpp.html +++ b/barrayvector-meat_8hpp.html @@ -104,7 +104,7 @@ diff --git a/barrayvector-meat_8hpp_source.html b/barrayvector-meat_8hpp_source.html index 7607c8b3f..0c804894a 100644 --- a/barrayvector-meat_8hpp_source.html +++ b/barrayvector-meat_8hpp_source.html @@ -444,7 +444,7 @@ diff --git a/barry-configuration_8hpp.html b/barry-configuration_8hpp.html index ccb32880e..a28308fce 100644 --- a/barry-configuration_8hpp.html +++ b/barry-configuration_8hpp.html @@ -257,7 +257,7 @@

  • include
  • barry
  • barry-configuration.hpp
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barry-configuration_8hpp_source.html b/barry-configuration_8hpp_source.html index b14b2f5af..a9f37464e 100644 --- a/barry-configuration_8hpp_source.html +++ b/barry-configuration_8hpp_source.html @@ -160,7 +160,7 @@ diff --git a/barry-debug_8hpp.html b/barry-debug_8hpp.html index 01462d3b2..8fc12488d 100644 --- a/barry-debug_8hpp.html +++ b/barry-debug_8hpp.html @@ -139,7 +139,7 @@

  • include
  • barry
  • barry-debug.hpp
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barry-debug_8hpp_source.html b/barry-debug_8hpp_source.html index 6103337f0..03419e78e 100644 --- a/barry-debug_8hpp_source.html +++ b/barry-debug_8hpp_source.html @@ -145,7 +145,7 @@ diff --git a/barry-macros_8hpp.html b/barry-macros_8hpp.html index d9d13af74..345dde937 100644 --- a/barry-macros_8hpp.html +++ b/barry-macros_8hpp.html @@ -236,7 +236,7 @@

  • include
  • barry
  • barry-macros.hpp
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barry-macros_8hpp_source.html b/barry-macros_8hpp_source.html index f8df17606..23fefa554 100644 --- a/barry-macros_8hpp_source.html +++ b/barry-macros_8hpp_source.html @@ -121,7 +121,7 @@ diff --git a/barry_8hpp.html b/barry_8hpp.html index e02149431..eec407b82 100644 --- a/barry_8hpp.html +++ b/barry_8hpp.html @@ -401,7 +401,7 @@

  • include
  • barry
  • barry.hpp
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barry_8hpp_source.html b/barry_8hpp_source.html index 6bb490c9e..475a9ddb2 100644 --- a/barry_8hpp_source.html +++ b/barry_8hpp_source.html @@ -237,7 +237,7 @@ diff --git a/cell-bones_8hpp.html b/cell-bones_8hpp.html index 5556a1770..ca1972e31 100644 --- a/cell-bones_8hpp.html +++ b/cell-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/cell-bones_8hpp_source.html b/cell-bones_8hpp_source.html index fc59faa09..25aa99698 100644 --- a/cell-bones_8hpp_source.html +++ b/cell-bones_8hpp_source.html @@ -159,7 +159,7 @@ diff --git a/cell-meat_8hpp.html b/cell-meat_8hpp.html index b1874badf..a8a59fddd 100644 --- a/cell-meat_8hpp.html +++ b/cell-meat_8hpp.html @@ -113,7 +113,7 @@ diff --git a/cell-meat_8hpp_source.html b/cell-meat_8hpp_source.html index c2ce2f166..98d1e30e1 100644 --- a/cell-meat_8hpp_source.html +++ b/cell-meat_8hpp_source.html @@ -180,7 +180,7 @@ diff --git a/class_b_array-members.html b/class_b_array-members.html index 6c7d961fa..fe5bd87ee 100644 --- a/class_b_array-members.html +++ b/class_b_array-members.html @@ -165,7 +165,7 @@ diff --git a/class_b_array.html b/class_b_array.html index 80a1348cb..1589bbb75 100644 --- a/class_b_array.html +++ b/class_b_array.html @@ -2141,7 +2141,7 @@

  • BArray
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_cell-members.html b/class_b_array_cell-members.html index c6eae52a9..0e403cbbb 100644 --- a/class_b_array_cell-members.html +++ b/class_b_array_cell-members.html @@ -113,7 +113,7 @@ diff --git a/class_b_array_cell.html b/class_b_array_cell.html index 22997ec84..50d47496b 100644 --- a/class_b_array_cell.html +++ b/class_b_array_cell.html @@ -430,7 +430,7 @@

  • BArrayCell
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_cell__const-members.html b/class_b_array_cell__const-members.html index e990fbe99..6e17514f4 100644 --- a/class_b_array_cell__const-members.html +++ b/class_b_array_cell__const-members.html @@ -113,7 +113,7 @@ diff --git a/class_b_array_cell__const.html b/class_b_array_cell__const.html index e5251a703..66e57cc5e 100644 --- a/class_b_array_cell__const.html +++ b/class_b_array_cell__const.html @@ -430,7 +430,7 @@

  • BArrayCell_const
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_dense-members.html b/class_b_array_dense-members.html index bf542298b..f6d7644bd 100644 --- a/class_b_array_dense-members.html +++ b/class_b_array_dense-members.html @@ -170,7 +170,7 @@ diff --git a/class_b_array_dense.html b/class_b_array_dense.html index b86d90663..8d6c9946f 100644 --- a/class_b_array_dense.html +++ b/class_b_array_dense.html @@ -2668,7 +2668,7 @@

  • BArrayDense
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
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  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_dense_cell-members.html b/class_b_array_dense_cell-members.html index e82316397..afd72bae8 100644 --- a/class_b_array_dense_cell-members.html +++ b/class_b_array_dense_cell-members.html @@ -117,7 +117,7 @@ diff --git a/class_b_array_dense_cell.html b/class_b_array_dense_cell.html index be4e8a586..12e0a6318 100644 --- a/class_b_array_dense_cell.html +++ b/class_b_array_dense_cell.html @@ -550,7 +550,7 @@

  • BArrayDenseCell
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
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diff --git a/class_b_array_dense_cell__const.html b/class_b_array_dense_cell__const.html index bfe5e7337..b59b9349e 100644 --- a/class_b_array_dense_cell__const.html +++ b/class_b_array_dense_cell__const.html @@ -111,7 +111,7 @@ diff --git a/class_b_array_dense_col-members.html b/class_b_array_dense_col-members.html index c4caf0e2c..dc4e12b82 100644 --- a/class_b_array_dense_col-members.html +++ b/class_b_array_dense_col-members.html @@ -112,7 +112,7 @@ diff --git a/class_b_array_dense_col.html b/class_b_array_dense_col.html index 100d6e5c0..923dcb44b 100644 --- a/class_b_array_dense_col.html +++ b/class_b_array_dense_col.html @@ -379,7 +379,7 @@

  • BArrayDenseCol
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
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  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_dense_col__const-members.html b/class_b_array_dense_col__const-members.html index 32cf13971..80c8e83ef 100644 --- a/class_b_array_dense_col__const-members.html +++ b/class_b_array_dense_col__const-members.html @@ -111,7 +111,7 @@ diff --git a/class_b_array_dense_col__const.html b/class_b_array_dense_col__const.html index 0d2c5cb34..358d055fe 100644 --- a/class_b_array_dense_col__const.html +++ b/class_b_array_dense_col__const.html @@ -351,7 +351,7 @@

  • BArrayDenseCol_const
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
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diff --git a/class_b_array_dense_row-members.html b/class_b_array_dense_row-members.html index 1a11db945..ff8c10b57 100644 --- a/class_b_array_dense_row-members.html +++ b/class_b_array_dense_row-members.html @@ -112,7 +112,7 @@ diff --git a/class_b_array_dense_row.html b/class_b_array_dense_row.html index 2dc326644..6580010c4 100644 --- a/class_b_array_dense_row.html +++ b/class_b_array_dense_row.html @@ -379,7 +379,7 @@

  • BArrayDenseRow
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
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diff --git a/class_b_array_dense_row__const-members.html b/class_b_array_dense_row__const-members.html index 34ef5e2ac..13e19ea6d 100644 --- a/class_b_array_dense_row__const-members.html +++ b/class_b_array_dense_row__const-members.html @@ -111,7 +111,7 @@ diff --git a/class_b_array_dense_row__const.html b/class_b_array_dense_row__const.html index e6cb99134..c594aed59 100644 --- a/class_b_array_dense_row__const.html +++ b/class_b_array_dense_row__const.html @@ -351,7 +351,7 @@

  • BArrayDenseRow_const
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
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diff --git a/class_b_array_row-members.html b/class_b_array_row-members.html index fc01de0ce..8f87abd84 100644 --- a/class_b_array_row-members.html +++ b/class_b_array_row-members.html @@ -113,7 +113,7 @@ diff --git a/class_b_array_row.html b/class_b_array_row.html index 38bca1da9..b7aa62d60 100644 --- a/class_b_array_row.html +++ b/class_b_array_row.html @@ -354,7 +354,7 @@

  • BArrayRow
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  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_row__const-members.html b/class_b_array_row__const-members.html index 4d45105d6..af5a9dc06 100644 --- a/class_b_array_row__const-members.html +++ b/class_b_array_row__const-members.html @@ -113,7 +113,7 @@ diff --git a/class_b_array_row__const.html b/class_b_array_row__const.html index c841b1dd9..cf6fadf26 100644 --- a/class_b_array_row__const.html +++ b/class_b_array_row__const.html @@ -354,7 +354,7 @@

  • BArrayRow_const
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_vector-members.html b/class_b_array_vector-members.html index f257b7f8a..7de0c5c31 100644 --- a/class_b_array_vector-members.html +++ b/class_b_array_vector-members.html @@ -118,7 +118,7 @@ diff --git a/class_b_array_vector.html b/class_b_array_vector.html index 145738c11..91ff5f136 100644 --- a/class_b_array_vector.html +++ b/class_b_array_vector.html @@ -585,7 +585,7 @@

  • BArrayVector
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_vector__const-members.html b/class_b_array_vector__const-members.html index 982bb0e8b..9bff2da4c 100644 --- a/class_b_array_vector__const-members.html +++ b/class_b_array_vector__const-members.html @@ -118,7 +118,7 @@ diff --git a/class_b_array_vector__const.html b/class_b_array_vector__const.html index 209a582f3..1dfefa1a8 100644 --- a/class_b_array_vector__const.html +++ b/class_b_array_vector__const.html @@ -567,7 +567,7 @@

  • BArrayVector_const
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_cell-members.html b/class_cell-members.html index e9581bea2..518966d7a 100644 --- a/class_cell-members.html +++ b/class_cell-members.html @@ -124,7 +124,7 @@ diff --git a/class_cell.html b/class_cell.html index 4cf2a2407..e217cce72 100644 --- a/class_cell.html +++ b/class_cell.html @@ -695,7 +695,7 @@

  • Cell
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_cell__const.html b/class_cell__const.html index bd2a7f5bc..a6673b00d 100644 --- a/class_cell__const.html +++ b/class_cell__const.html @@ -111,7 +111,7 @@ diff --git a/class_const_b_array_row_iter-members.html b/class_const_b_array_row_iter-members.html index 495aab470..b72b08a65 100644 --- a/class_const_b_array_row_iter-members.html +++ b/class_const_b_array_row_iter-members.html @@ -110,7 +110,7 @@ diff --git a/class_const_b_array_row_iter.html b/class_const_b_array_row_iter.html index 707577c49..87881f4e6 100644 --- a/class_const_b_array_row_iter.html +++ b/class_const_b_array_row_iter.html @@ -278,7 +278,7 @@

  • ConstBArrayRowIter
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_counter-members.html b/class_counter-members.html index e6b8c2679..b5661e525 100644 --- a/class_counter-members.html +++ b/class_counter-members.html @@ -123,7 +123,7 @@ diff --git a/class_counter.html b/class_counter.html index 0dd13dc19..d1ff4e167 100644 --- a/class_counter.html +++ b/class_counter.html @@ -679,7 +679,7 @@

  • Counter
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_counters-members.html b/class_counters-members.html index 7373bc1ea..8b34275ec 100644 --- a/class_counters-members.html +++ b/class_counters-members.html @@ -118,7 +118,7 @@ diff --git a/class_counters.html b/class_counters.html index b7a07856c..1c4e8a412 100644 --- a/class_counters.html +++ b/class_counters.html @@ -573,7 +573,7 @@

  • Counters
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_d_e_f_m-members.html b/class_d_e_f_m-members.html index 492a8efe9..a325cec08 100644 --- a/class_d_e_f_m-members.html +++ b/class_d_e_f_m-members.html @@ -124,7 +124,7 @@ diff --git a/class_d_e_f_m.html b/class_d_e_f_m.html index 9fb704ac5..cba15980c 100644 --- a/class_d_e_f_m.html +++ b/class_d_e_f_m.html @@ -811,7 +811,7 @@

  • DEFM
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_d_e_f_m_counter_data-members.html b/class_d_e_f_m_counter_data-members.html index 038205a0c..2f912fb33 100644 --- a/class_d_e_f_m_counter_data-members.html +++ b/class_d_e_f_m_counter_data-members.html @@ -114,7 +114,7 @@ diff --git a/class_d_e_f_m_counter_data.html b/class_d_e_f_m_counter_data.html index ab6d8d64d..668fd998a 100644 --- a/class_d_e_f_m_counter_data.html +++ b/class_d_e_f_m_counter_data.html @@ -146,7 +146,7 @@ diff --git a/class_d_e_f_m_data-members.html b/class_d_e_f_m_data-members.html index 9512713e3..35c7d92f6 100644 --- a/class_d_e_f_m_data-members.html +++ b/class_d_e_f_m_data-members.html @@ -119,7 +119,7 @@ diff --git a/class_d_e_f_m_data.html b/class_d_e_f_m_data.html index 04c5f9c84..67102cf3e 100644 --- a/class_d_e_f_m_data.html +++ b/class_d_e_f_m_data.html @@ -164,7 +164,7 @@ diff --git a/class_d_e_f_m_rule_data-members.html b/class_d_e_f_m_rule_data-members.html index a37924971..8045ab701 100644 --- a/class_d_e_f_m_rule_data-members.html +++ b/class_d_e_f_m_rule_data-members.html @@ -114,7 +114,7 @@ diff --git a/class_d_e_f_m_rule_data.html b/class_d_e_f_m_rule_data.html index 1a48489e6..a8d5350c4 100644 --- a/class_d_e_f_m_rule_data.html +++ b/class_d_e_f_m_rule_data.html @@ -150,7 +150,7 @@ diff --git a/class_d_e_f_m_rule_dyn_data-members.html b/class_d_e_f_m_rule_dyn_data-members.html index 214892adc..a4aefbc64 100644 --- a/class_d_e_f_m_rule_dyn_data-members.html +++ b/class_d_e_f_m_rule_dyn_data-members.html @@ -117,7 +117,7 @@ diff --git a/class_d_e_f_m_rule_dyn_data.html b/class_d_e_f_m_rule_dyn_data.html index e84e4c310..cf074f476 100644 --- a/class_d_e_f_m_rule_dyn_data.html +++ b/class_d_e_f_m_rule_dyn_data.html @@ -167,7 +167,7 @@ diff --git a/class_entries-members.html b/class_entries-members.html index 3dcab73d2..11e18297c 100644 --- a/class_entries-members.html +++ b/class_entries-members.html @@ -111,7 +111,7 @@ diff --git a/class_entries.html b/class_entries.html index 7d27f3287..a20cb4a9d 100644 --- a/class_entries.html +++ b/class_entries.html @@ -323,7 +323,7 @@

  • Entries
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_flock-members.html b/class_flock-members.html index f002b2b5d..8a2cc4939 100644 --- a/class_flock-members.html +++ b/class_flock-members.html @@ -105,7 +105,7 @@ Flock()Flockinline get_counters()Flockinline get_model()Flockinline - get_stats_support()Flockinline + get_stats_support()Flockinline get_stats_target()Flockinline get_support_fun()Flockinline init(size_t bar_width=BARRY_PROGRESS_BAR_WIDTH)Flockinline @@ -130,7 +130,7 @@ diff --git a/class_flock.html b/class_flock.html index 57cffb9fe..a91a5cac0 100644 --- a/class_flock.html +++ b/class_flock.html @@ -124,8 +124,8 @@   PhyloSupport * get_support_fun ()   -std::vector< std::vector< double > > * get_stats_support () -  +std::vector< double > * get_stats_support () +  std::vector< std::vector< double > > * get_stats_target ()   PhyloModel * get_model () @@ -374,8 +374,8 @@

-

◆ get_stats_support()

+ +

◆ get_stats_support()

@@ -384,7 +384,7 @@

- + @@ -948,7 +948,7 @@

  • Flock
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_flock.js b/class_flock.js index aa92ecc85..adef9a576 100644 --- a/class_flock.js +++ b/class_flock.js @@ -6,7 +6,7 @@ var class_flock = [ "colnames", "class_flock.html#a0fb9c1d463b2cd19a966aa85d5511a92", null ], [ "get_counters", "class_flock.html#a1010aa9fb40acb618c604c531e2528bb", null ], [ "get_model", "class_flock.html#a9692be014117ae093ce160462dbde0d2", null ], - [ "get_stats_support", "class_flock.html#ab5f4c94b0484772321b3856debdf3a58", null ], + [ "get_stats_support", "class_flock.html#a15096ee181dfa46c9dd30aacd41c0dc5", null ], [ "get_stats_target", "class_flock.html#a26462201318e4bf34756a2a14e2cc3fb", null ], [ "get_support_fun", "class_flock.html#add876188b5f16af037525e71eaf7fc05", null ], [ "init", "class_flock.html#a5ddef5ec4a7b150a354db11bb6b0c593", null ], diff --git a/class_freq_table-members.html b/class_freq_table-members.html index 3f753f116..629b35c2a 100644 --- a/class_freq_table-members.html +++ b/class_freq_table-members.html @@ -115,7 +115,7 @@ diff --git a/class_freq_table.html b/class_freq_table.html index face04569..3c3295090 100644 --- a/class_freq_table.html +++ b/class_freq_table.html @@ -491,7 +491,7 @@

  • FreqTable
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_geese-members.html b/class_geese-members.html index 10154e758..7f9303fc0 100644 --- a/class_geese-members.html +++ b/class_geese-members.html @@ -159,7 +159,7 @@ diff --git a/class_geese.html b/class_geese.html index 92a403053..7ab0ad077 100644 --- a/class_geese.html +++ b/class_geese.html @@ -1895,7 +1895,7 @@

  • Geese
    • -
  • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_model-members.html b/class_model-members.html index b0db1df62..46ad9e9d0 100644 --- a/class_model-members.html +++ b/class_model-members.html @@ -129,7 +129,7 @@

- + @@ -165,8 +165,10 @@ - + + + @@ -182,7 +184,7 @@ diff --git a/class_model.html b/class_model.html index f741d57d8..c51d884f8 100644 --- a/class_model.html +++ b/class_model.html @@ -255,8 +255,8 @@ - - + + @@ -313,9 +313,15 @@
  • term k
    • - - - + + + + + + + + + @@ -394,7 +400,7 @@

    -

    Definition at line 171 of file model-meat.hpp.

    +

    Definition at line 176 of file model-meat.hpp.

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    -

    Definition at line 170 of file model-bones.hpp.

    +

    Definition at line 172 of file model-bones.hpp.

    @@ -535,7 +541,7 @@

    Returns
    The number of the array.

    When computing with the powerset, we need to grow the corresponding vectors on the fly

    -

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    +

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    Definition at line 1193 of file model-meat.hpp.

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    Returns
    double The conditional probability
    -

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    +

    Definition at line 1533 of file model-meat.hpp.

    - -

    ◆ get_stats_support()

    + +

    ◆ get_stats_support()

    @@ -1204,7 +1210,7 @@

    std::vector< std::vector< double > > * Flock::get_stats_support std::vector< double > * Flock::get_stats_support ( )
    get_rengine() constModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    get_rules()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    get_rules_dyn()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    get_stats_support()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    get_stats_support()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    get_stats_target()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    get_support_fun()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    keys2supportModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
    set_transform_model(std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    size() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    size_unique() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    stats_supportModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
    stats_supportModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
    stats_support_n_arraysModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
    stats_support_sizesModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
    stats_support_sizes_accModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
    stats_targetModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
    store_psets() noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
    support_funModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
    std::vector< std::vector< double > > * get_stats_target ()
     Raw pointers to the support and target statistics. More...
     
    std::vector< std::vector< double > > * get_stats_support ()
     
    std::vector< double > * get_stats_support ()
     
    std::vector< size_t > * get_arrays2support ()
     
    std::vector< std::vector< Array_Type > > * get_pset_arrays ()
    std::vector< std::vector< double > > stats_support
     Sufficient statistics of the model (support) More...
     
    std::vector< double > stats_support
     Sufficient statistics of the model (support) More...
     
    std::vector< size_t > stats_support_sizes
     Number of vectors included in the support. More...
     
    std::vector< size_t > stats_support_sizes_acc
     Accumulated number of vectors included in the support. More...
     
    std::vector< size_t > stats_support_n_arrays
     Number of arrays included per support. More...
     
     - +
    std::vector< std::vector< double > > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_stats_supportstd::vector< double > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_stats_support
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    When computing with the powerset, we need to grow the corresponding vectors on the fly

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    -

    Definition at line 140 of file model-bones.hpp.

    +

    Definition at line 142 of file model-bones.hpp.

    @@ -1894,7 +1900,7 @@

    -

    Definition at line 417 of file model-meat.hpp.

    +

    Definition at line 428 of file model-meat.hpp.

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    -

    Definition at line 459 of file model-meat.hpp.

    +

    Definition at line 470 of file model-meat.hpp.

    @@ -1954,7 +1960,7 @@

    -

    Definition at line 150 of file model-bones.hpp.

    +

    Definition at line 152 of file model-bones.hpp.

    @@ -2006,7 +2012,7 @@

    Definition at line 1497 of file model-meat.hpp.

    +

    Definition at line 1583 of file model-meat.hpp.

    @@ -2032,7 +2038,7 @@

    -

    Definition at line 1076 of file model-meat.hpp.

    +

    Definition at line 1135 of file model-meat.hpp.

    @@ -2058,7 +2064,7 @@

    -

    Definition at line 1084 of file model-meat.hpp.

    +

    Definition at line 1143 of file model-meat.hpp.

    @@ -2084,7 +2090,7 @@

    -

    Definition at line 337 of file model-meat.hpp.

    +

    Definition at line 350 of file model-meat.hpp.

    @@ -2110,7 +2116,7 @@

    -

    Definition at line 1120 of file model-meat.hpp.

    +

    Definition at line 1179 of file model-meat.hpp.

    @@ -2200,7 +2206,7 @@

    -

    Definition at line 65 of file model-bones.hpp.

    +

    Definition at line 67 of file model-bones.hpp.

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    -

    Definition at line 95 of file model-bones.hpp.

    +

    Definition at line 97 of file model-bones.hpp.

    @@ -2252,7 +2258,7 @@

    -

    Definition at line 91 of file model-bones.hpp.

    +

    Definition at line 93 of file model-bones.hpp.

    @@ -2278,7 +2284,7 @@

    -

    Definition at line 103 of file model-bones.hpp.

    +

    Definition at line 105 of file model-bones.hpp.

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    -

    Definition at line 104 of file model-bones.hpp.

    +

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    -

    Definition at line 105 of file model-bones.hpp.

    +

    Definition at line 107 of file model-bones.hpp.

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    -

    Definition at line 101 of file model-bones.hpp.

    +

    Definition at line 103 of file model-bones.hpp.

    @@ -2411,7 +2417,7 @@

    Definition at line 72 of file model-bones.hpp.

    +

    Definition at line 74 of file model-bones.hpp.

    @@ -2437,7 +2443,7 @@

    -

    Definition at line 100 of file model-bones.hpp.

    +

    Definition at line 102 of file model-bones.hpp.

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    Definition at line 99 of file model-bones.hpp.

    +

    Definition at line 101 of file model-bones.hpp.

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    Definition at line 81 of file model-bones.hpp.

    +

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    Definition at line 83 of file model-bones.hpp.

    +

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    Definition at line 82 of file model-bones.hpp.

    +

    Definition at line 84 of file model-bones.hpp.

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    -

    Definition at line 92 of file model-bones.hpp.

    +

    Definition at line 94 of file model-bones.hpp.

    @@ -2627,12 +2633,12 @@

    -

    Definition at line 93 of file model-bones.hpp.

    +

    Definition at line 95 of file model-bones.hpp.

    - -

    ◆ stats_support

    + +

    ◆ stats_support

    @@ -2643,7 +2649,7 @@

    - +
    std::vector< std::vector< double > > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::stats_supportstd::vector< double > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::stats_support
    @@ -2683,8 +2689,64 @@

    Definition at line 65 of file model-bones.hpp.

    + +

    +
    + +

    ◆ stats_support_sizes

    + +
    +
    +
    +template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
    + + + + + +
    + + + + +
    std::vector< size_t > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::stats_support_sizes
    +     		+protected
    +
    + +

    Number of vectors included in the support.

    +

    Definition at line 63 of file model-bones.hpp.

    +
    +
    + +

    ◆ stats_support_sizes_acc

    + +
    +
    +
    +template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
    + + + + + +
    + + + + +
    std::vector< size_t > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::stats_support_sizes_acc
    +     		+protected
    +
    + +

    Accumulated number of vectors included in the support.

    + +

    Definition at line 64 of file model-bones.hpp.

    +
    @@ -2711,7 +2773,7 @@

    Definition at line 64 of file model-bones.hpp.

    +

    Definition at line 66 of file model-bones.hpp.

    @@ -2737,7 +2799,7 @@

    -

    Definition at line 94 of file model-bones.hpp.

    +

    Definition at line 96 of file model-bones.hpp.

    @@ -2771,7 +2833,7 @@

    Returns
    Nothing, but it will modify the model data.
    -

    Definition at line 123 of file model-bones.hpp.

    +

    Definition at line 125 of file model-bones.hpp.

    @@ -2797,7 +2859,7 @@

    -

    Definition at line 125 of file model-bones.hpp.

    +

    Definition at line 127 of file model-bones.hpp.

    @@ -2823,7 +2885,7 @@

    -

    Definition at line 80 of file model-bones.hpp.

    +

    Definition at line 82 of file model-bones.hpp.

    @@ -2837,7 +2899,7 @@

    • Model
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_model.js b/class_model.js index 8a0396f15..3f7ee47ee 100644 --- a/class_model.js +++ b/class_model.js @@ -26,7 +26,7 @@ var class_model = [ "get_rengine", "class_model.html#a02cac4f649946705bfb4d69bc3a3576f", null ], [ "get_rules", "class_model.html#a8796a5e54c0ba505129db2bc1e452d0d", null ], [ "get_rules_dyn", "class_model.html#aff4c85b28ba08c67b6d3308cf94fc30a", null ], - [ "get_stats_support", "class_model.html#a35e9c4103deb9e2deda35c2c61b30289", null ], + [ "get_stats_support", "class_model.html#a689e68b499eb7bfd92a7f8318f51c121", null ], [ "get_stats_target", "class_model.html#a5414f4d58c598c844bf0e7885e06488a", null ], [ "get_support_fun", "class_model.html#a5a887a9d87a1f86ccc783fd27a0a1ddc", null ], [ "likelihood", "class_model.html#a2b216befc5a05c5aa6607b9b617b14f6", null ], @@ -71,8 +71,10 @@ var class_model = [ "rengine", "class_model.html#aaccc1686d1d58f4fff36fb45b4e18422", null ], [ "rules", "class_model.html#a164a37ad8e2016e84b1873e64ba923f0", null ], [ "rules_dyn", "class_model.html#a11d9090903bfe8b35db92fe2579c2de3", null ], - [ "stats_support", "class_model.html#a39aa4fd9a3b78ec2c11b2766979df35e", null ], + [ "stats_support", "class_model.html#a3b96c8ef06619593e644c5d41d02b106", null ], [ "stats_support_n_arrays", "class_model.html#a70f54e805f1ecf2ac823c6abe8f4a503", null ], + [ "stats_support_sizes", "class_model.html#ac98158e9aa3d55dbd366c6721fe3343f", null ], + [ "stats_support_sizes_acc", "class_model.html#a66be2819cbf561e657b372e04721acc9", null ], [ "stats_target", "class_model.html#a23a878c633e4ed59f4921254d6c85e29", null ], [ "support_fun", "class_model.html#aaf2432f089c9c40fcb3e0fb3651d929e", null ], [ "transform_model_fun", "class_model.html#ab56e7e3a90d48c2c573ebdcbb01617fd", null ], diff --git a/class_net_counter_data-members.html b/class_net_counter_data-members.html index bd2cf9c05..19799bcad 100644 --- a/class_net_counter_data-members.html +++ b/class_net_counter_data-members.html @@ -109,7 +109,7 @@ diff --git a/class_net_counter_data.html b/class_net_counter_data.html index 9fdf6adc2..86a1ee094 100644 --- a/class_net_counter_data.html +++ b/class_net_counter_data.html @@ -261,7 +261,7 @@

    • NetCounterData
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    diff --git a/class_network_data-members.html b/class_network_data-members.html index 108e7baf6..d3606ccb3 100644 --- a/class_network_data-members.html +++ b/class_network_data-members.html @@ -110,7 +110,7 @@ diff --git a/class_network_data.html b/class_network_data.html index 784fde5f6..317bd2795 100644 --- a/class_network_data.html +++ b/class_network_data.html @@ -323,7 +323,7 @@

    • NetworkData
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_node-members.html b/class_node-members.html index 386a90eb2..0b9f9b5f9 100644 --- a/class_node-members.html +++ b/class_node-members.html @@ -125,7 +125,7 @@ diff --git a/class_node.html b/class_node.html index 3a8e35e71..f56e92f27 100644 --- a/class_node.html +++ b/class_node.html @@ -687,7 +687,7 @@

    • Node
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_node_data-members.html b/class_node_data-members.html index a82122be6..7a032c1bb 100644 --- a/class_node_data-members.html +++ b/class_node_data-members.html @@ -108,7 +108,7 @@ diff --git a/class_node_data.html b/class_node_data.html index 15bcac1f4..fd48418eb 100644 --- a/class_node_data.html +++ b/class_node_data.html @@ -230,7 +230,7 @@

    • NodeData
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_phylo_counter_data-members.html b/class_phylo_counter_data-members.html index a4d318dab..351e6fa62 100644 --- a/class_phylo_counter_data-members.html +++ b/class_phylo_counter_data-members.html @@ -117,7 +117,7 @@ diff --git a/class_phylo_counter_data.html b/class_phylo_counter_data.html index 7a2dd866d..738ad7f95 100644 --- a/class_phylo_counter_data.html +++ b/class_phylo_counter_data.html @@ -512,7 +512,7 @@

    • PhyloCounterData
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_phylo_rule_dyn_data-members.html b/class_phylo_rule_dyn_data-members.html index b238e66c8..68c9883c1 100644 --- a/class_phylo_rule_dyn_data-members.html +++ b/class_phylo_rule_dyn_data-members.html @@ -112,7 +112,7 @@ diff --git a/class_phylo_rule_dyn_data.html b/class_phylo_rule_dyn_data.html index b5b5d781f..b722884d8 100644 --- a/class_phylo_rule_dyn_data.html +++ b/class_phylo_rule_dyn_data.html @@ -330,7 +330,7 @@

    • PhyloRuleDynData
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_power_set-members.html b/class_power_set-members.html index 33934b450..353d92eeb 100644 --- a/class_power_set-members.html +++ b/class_power_set-members.html @@ -129,7 +129,7 @@ diff --git a/class_power_set.html b/class_power_set.html index a47573bc0..1565989ed 100644 --- a/class_power_set.html +++ b/class_power_set.html @@ -845,7 +845,7 @@

    • PowerSet
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_progress-members.html b/class_progress-members.html index d72f322af..4144aaaee 100644 --- a/class_progress-members.html +++ b/class_progress-members.html @@ -108,7 +108,7 @@ diff --git a/class_progress.html b/class_progress.html index 8dc89d3bd..f08f86adf 100644 --- a/class_progress.html +++ b/class_progress.html @@ -250,7 +250,7 @@

    • Progress
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_rule-members.html b/class_rule-members.html index 3b1c941f9..86035a560 100644 --- a/class_rule-members.html +++ b/class_rule-members.html @@ -113,7 +113,7 @@ diff --git a/class_rule.html b/class_rule.html index 68abaff64..1742521bc 100644 --- a/class_rule.html +++ b/class_rule.html @@ -452,7 +452,7 @@

    • Rule
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_rules-members.html b/class_rules-members.html index 8e8a2da94..3c837232b 100644 --- a/class_rules-members.html +++ b/class_rules-members.html @@ -117,7 +117,7 @@ diff --git a/class_rules.html b/class_rules.html index 560e2fe12..af1b41e20 100644 --- a/class_rules.html +++ b/class_rules.html @@ -617,7 +617,7 @@

    • Rules
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_stats_counter-members.html b/class_stats_counter-members.html index ecaa0dd9e..f9505fdf7 100644 --- a/class_stats_counter-members.html +++ b/class_stats_counter-members.html @@ -118,7 +118,7 @@ diff --git a/class_stats_counter.html b/class_stats_counter.html index d41af5663..dbe23a036 100644 --- a/class_stats_counter.html +++ b/class_stats_counter.html @@ -519,7 +519,7 @@

    • StatsCounter
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_support-members.html b/class_support-members.html index b012ddae7..30c61fd69 100644 --- a/class_support-members.html +++ b/class_support-members.html @@ -116,7 +116,7 @@ delete_rules_dynSupport< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > eval_rules_dyn(const std::vector< double > &counts, const size_t &i, const size_t &j)Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline get_counters()Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline - get_counts() constSupport< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline + get_counts() constSupport< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline get_current_stats()Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline get_data() constSupport< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline get_rules()Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline @@ -143,7 +143,7 @@ diff --git a/class_support.html b/class_support.html index 7d4665ef9..cd0febc8f 100644 --- a/class_support.html +++ b/class_support.html @@ -123,8 +123,8 @@ void calc (std::vector< Array_Type > *array_bank=nullptr, std::vector< double > *stats_bank=nullptr, size_t max_num_elements_=0u)  Computes the entire support. More...
      -std::vector< double > get_counts () const -  +const std::vector< double > & get_counts () const +  std::vector< double > * get_current_stats ()  List current statistics. More...
      @@ -644,12 +644,12 @@

    Definition at line 594 of file support-meat.hpp.

    +

    Definition at line 593 of file support-meat.hpp.

    - -

    ◆ get_counts()

    + +

    ◆ get_counts()

    @@ -660,7 +660,7 @@

    - +
    std::vector< double > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_countsconst std::vector< double > & Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_counts
    @@ -670,7 +670,7 @@

    -

    Definition at line 558 of file support-meat.hpp.

    +

    Definition at line 557 of file support-meat.hpp.

    @@ -698,7 +698,7 @@

    Definition at line 572 of file support-meat.hpp.

    +

    Definition at line 571 of file support-meat.hpp.

    @@ -724,7 +724,7 @@

    -

    Definition at line 589 of file support-meat.hpp.

    +

    Definition at line 588 of file support-meat.hpp.

    @@ -752,7 +752,7 @@

    Definition at line 599 of file support-meat.hpp.

    +

    Definition at line 598 of file support-meat.hpp.

    @@ -780,7 +780,7 @@

    Definition at line 604 of file support-meat.hpp.

    +

    Definition at line 603 of file support-meat.hpp.

    @@ -846,7 +846,7 @@

    -

    Definition at line 577 of file support-meat.hpp.

    +

    Definition at line 576 of file support-meat.hpp.

    @@ -1277,7 +1277,7 @@

    • Support
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/class_support.js b/class_support.js index 7ad8dd123..b4eee0325 100644 --- a/class_support.js +++ b/class_support.js @@ -12,7 +12,7 @@ var class_support = [ "calc", "class_support.html#a1f72e55e9f2ffbd5bb07ccecfa6ad876", null ], [ "eval_rules_dyn", "class_support.html#a0f3a2ffc8015a7967b5fc892cd2e3888", null ], [ "get_counters", "class_support.html#a9f2237792f9688bf86ae89454048db9a", null ], - [ "get_counts", "class_support.html#a47cc8dfe2705652a988cf77f0f27b43e", null ], + [ "get_counts", "class_support.html#aaaec4ce57d2d79265289ab8a7b6f60d4", null ], [ "get_current_stats", "class_support.html#afc4fca55ca37dc97ed692687c38c7ce2", null ], [ "get_data", "class_support.html#ac19420a6296244d85274261f39e4ceae", null ], [ "get_rules", "class_support.html#a368a9c7797e1a76c3ee150070e66c212", null ], diff --git a/classes.html b/classes.html index da4cfae56..8305bc14c 100644 --- a/classes.html +++ b/classes.html @@ -140,7 +140,7 @@ diff --git a/col-bones_8hpp.html b/col-bones_8hpp.html index 494bace12..0e94983d9 100644 --- a/col-bones_8hpp.html +++ b/col-bones_8hpp.html @@ -104,7 +104,7 @@ diff --git a/col-bones_8hpp_source.html b/col-bones_8hpp_source.html index 62d41cd36..02c62f3d2 100644 --- a/col-bones_8hpp_source.html +++ b/col-bones_8hpp_source.html @@ -159,7 +159,7 @@ diff --git a/counters-bones_8hpp.html b/counters-bones_8hpp.html index c138e36fa..f3bc2cae8 100644 --- a/counters-bones_8hpp.html +++ b/counters-bones_8hpp.html @@ -125,7 +125,7 @@ diff --git a/counters-bones_8hpp_source.html b/counters-bones_8hpp_source.html index ee4f3a4ff..30a2dccf9 100644 --- a/counters-bones_8hpp_source.html +++ b/counters-bones_8hpp_source.html @@ -258,7 +258,7 @@ diff --git a/counters-meat_8hpp.html b/counters-meat_8hpp.html index f2858b2e4..717aecb37 100644 --- a/counters-meat_8hpp.html +++ b/counters-meat_8hpp.html @@ -1560,7 +1560,7 @@

    • include
    • barry
    • counters-meat.hpp
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/counters-meat_8hpp_source.html b/counters-meat_8hpp_source.html index ebea4232a..6aa15ca66 100644 --- a/counters-meat_8hpp_source.html +++ b/counters-meat_8hpp_source.html @@ -417,7 +417,7 @@ diff --git a/defm-bones_8hpp.html b/defm-bones_8hpp.html index f711b3cb4..5ad0e71d0 100644 --- a/defm-bones_8hpp.html +++ b/defm-bones_8hpp.html @@ -121,7 +121,7 @@ diff --git a/defm-bones_8hpp_source.html b/defm-bones_8hpp_source.html index 082bc043f..7da9b2740 100644 --- a/defm-bones_8hpp_source.html +++ b/defm-bones_8hpp_source.html @@ -216,7 +216,7 @@ diff --git a/defm-meat_8hpp.html b/defm-meat_8hpp.html index 0f3800792..c53ec921d 100644 --- a/defm-meat_8hpp.html +++ b/defm-meat_8hpp.html @@ -212,7 +212,7 @@

    • include
    • barry
    • models
    • defm
    • defm-meat.hpp
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/defm-meat_8hpp_source.html b/defm-meat_8hpp_source.html index 98c8ee06c..571298416 100644 --- a/defm-meat_8hpp_source.html +++ b/defm-meat_8hpp_source.html @@ -592,7 +592,7 @@ diff --git a/defm-types_8hpp.html b/defm-types_8hpp.html index d37a7c3b2..6ea961d0b 100644 --- a/defm-types_8hpp.html +++ b/defm-types_8hpp.html @@ -171,7 +171,7 @@

    • include
    • barry
    • models
    • defm
    • defm-types.hpp
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/defm-types_8hpp_source.html b/defm-types_8hpp_source.html index 2efa033d9..09a820695 100644 --- a/defm-types_8hpp_source.html +++ b/defm-types_8hpp_source.html @@ -305,7 +305,7 @@ diff --git a/defm_2counters_8hpp.html b/defm_2counters_8hpp.html index b7cc1f9c3..d256879e5 100644 --- a/defm_2counters_8hpp.html +++ b/defm_2counters_8hpp.html @@ -326,7 +326,7 @@

    • include
    • barry
    • models
    • defm
    • counters.hpp
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/defm_2counters_8hpp_source.html b/defm_2counters_8hpp_source.html index d2b5a03b3..7be1db211 100644 --- a/defm_2counters_8hpp_source.html +++ b/defm_2counters_8hpp_source.html @@ -794,7 +794,7 @@ diff --git a/defm_8hpp.html b/defm_8hpp.html index 6312a2fbc..2b54f21c5 100644 --- a/defm_8hpp.html +++ b/defm_8hpp.html @@ -133,7 +133,7 @@ diff --git a/defm_8hpp_source.html b/defm_8hpp_source.html index 5705b19a5..2cbdb19fe 100644 --- a/defm_8hpp_source.html +++ b/defm_8hpp_source.html @@ -126,7 +126,7 @@ diff --git a/dir_000001_000002.html b/dir_000001_000002.html index 50176777f..a292ce06f 100644 --- a/dir_000001_000002.html +++ b/dir_000001_000002.html @@ -98,7 +98,7 @@

    barry → counters Relation

    diff --git a/dir_000003_000004.html b/dir_000003_000004.html index eef901828..e53119bd1 100644 --- a/dir_000003_000004.html +++ b/dir_000003_000004.html @@ -98,7 +98,7 @@

    models → defm Relation

    • include
    • barry
    • models
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/dir_000003_000005.html b/dir_000003_000005.html index 782c1ebfe..466cf5708 100644 --- a/dir_000003_000005.html +++ b/dir_000003_000005.html @@ -98,7 +98,7 @@

    models → geese Relation

    • include
    • barry
    • models
      • -
    • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
      • +
    • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
    diff --git a/dir_488ec4010567cc6d95c62bdcb57a6d3e.html b/dir_488ec4010567cc6d95c62bdcb57a6d3e.html index e70b8c474..83a6e7369 100644 --- a/dir_488ec4010567cc6d95c62bdcb57a6d3e.html +++ b/dir_488ec4010567cc6d95c62bdcb57a6d3e.html @@ -130,7 +130,7 @@ diff --git a/dir_6e63e3665115632dc5d61b2d6d6c3354.html b/dir_6e63e3665115632dc5d61b2d6d6c3354.html index 3fba341a5..a7c86d72f 100644 --- a/dir_6e63e3665115632dc5d61b2d6d6c3354.html +++ b/dir_6e63e3665115632dc5d61b2d6d6c3354.html @@ -203,7 +203,7 @@ diff --git a/dir_b3150c389b0f5b078392750f1ae70361.html b/dir_b3150c389b0f5b078392750f1ae70361.html index 4ebd6a315..9d11675ad 100644 --- a/dir_b3150c389b0f5b078392750f1ae70361.html +++ b/dir_b3150c389b0f5b078392750f1ae70361.html @@ -110,7 +110,7 @@ diff --git a/dir_c5954a04c87570f0664da134464d5428.html b/dir_c5954a04c87570f0664da134464d5428.html index 36076f873..c5a8a4247 100644 --- a/dir_c5954a04c87570f0664da134464d5428.html +++ b/dir_c5954a04c87570f0664da134464d5428.html @@ -134,7 +134,7 @@ diff --git a/dir_d44c64559bbebec7f509842c48db8b23.html b/dir_d44c64559bbebec7f509842c48db8b23.html index c19fabea3..7f457658c 100644 --- a/dir_d44c64559bbebec7f509842c48db8b23.html +++ b/dir_d44c64559bbebec7f509842c48db8b23.html @@ -117,7 +117,7 @@ diff --git a/dir_d7a554d3e09ed8456d56450fe8436947.html b/dir_d7a554d3e09ed8456d56450fe8436947.html index 1a6917db3..1398f6f94 100644 --- a/dir_d7a554d3e09ed8456d56450fe8436947.html +++ b/dir_d7a554d3e09ed8456d56450fe8436947.html @@ -116,7 +116,7 @@ diff --git a/files.html b/files.html index dafe248e6..93974096c 100644 --- a/files.html +++ b/files.html @@ -173,7 +173,7 @@ diff --git a/flock-bones_8hpp.html b/flock-bones_8hpp.html index b5a9d758b..8c5097cb8 100644 --- a/flock-bones_8hpp.html +++ b/flock-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/flock-bones_8hpp_source.html b/flock-bones_8hpp_source.html index a12c59672..e5d309135 100644 --- a/flock-bones_8hpp_source.html +++ b/flock-bones_8hpp_source.html @@ -129,7 +129,7 @@
    53  // void add_geese(Geese x);
    54  PhyloCounters * get_counters();
    55  PhyloSupport * get_support_fun();
    -
    56  std::vector< std::vector< double > > * get_stats_support();
    +
    56  std::vector< double > * get_stats_support();
    57  std::vector< std::vector< double > > * get_stats_target();
    58  PhyloModel * get_model();
    59 
    @@ -163,6 +163,7 @@
    Flock::rengine
    std::mt19937 rengine
    Definition: flock-bones.hpp:22
    Flock::colnames
    std::vector< std::string > colnames() const
    Definition: flock-meat.hpp:250
    Flock::get_counters
    PhyloCounters * get_counters()
    Definition: flock-meat.hpp:100
    +
    Flock::get_stats_support
    std::vector< double > * get_stats_support()
    Definition: flock-meat.hpp:117
    Flock::set_seed
    void set_seed(const size_t &s)
    Set the seed of the model.
    Definition: flock-meat.hpp:42
    Flock::get_stats_target
    std::vector< std::vector< double > > * get_stats_target()
    Definition: flock-meat.hpp:124
    @@ -176,7 +177,6 @@
    Flock::get_model
    PhyloModel * get_model()
    Definition: flock-meat.hpp:131
    Flock::initialized
    bool initialized
    Definition: flock-bones.hpp:19
    -
    Flock::get_stats_support
    std::vector< std::vector< double > > * get_stats_support()
    Definition: flock-meat.hpp:117
    Flock::support_size
    size_t support_size() const noexcept
    Definition: flock-meat.hpp:243
    Flock::likelihood_joint
    double likelihood_joint(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true, size_t ncores=1u)
    Returns the joint likelihood of the model.
    Definition: flock-meat.hpp:138
    Flock::get_support_fun
    PhyloSupport * get_support_fun()
    Definition: flock-meat.hpp:110
    @@ -197,7 +197,7 @@ diff --git a/flock-meat_8hpp.html b/flock-meat_8hpp.html index 04756ff68..a989ea8df 100644 --- a/flock-meat_8hpp.html +++ b/flock-meat_8hpp.html @@ -113,7 +113,7 @@ diff --git a/flock-meat_8hpp_source.html b/flock-meat_8hpp_source.html index ace2d0fbe..d71d8474b 100644 --- a/flock-meat_8hpp_source.html +++ b/flock-meat_8hpp_source.html @@ -212,7 +212,7 @@
    114 
    115 }
    116 
    -
    117 inline std::vector< std::vector< double > > * Flock::get_stats_support()
    +
    117 inline std::vector< double > * Flock::get_stats_support()
    118 {
    119 
    120  return this->model.get_stats_support();
    @@ -440,6 +440,7 @@
    Flock::rengine
    std::mt19937 rengine
    Definition: flock-bones.hpp:22
    Flock::colnames
    std::vector< std::string > colnames() const
    Definition: flock-meat.hpp:250
    Flock::get_counters
    PhyloCounters * get_counters()
    Definition: flock-meat.hpp:100
    +
    Flock::get_stats_support
    std::vector< double > * get_stats_support()
    Definition: flock-meat.hpp:117
    Flock::set_seed
    void set_seed(const size_t &s)
    Set the seed of the model.
    Definition: flock-meat.hpp:42
    Flock::get_stats_target
    std::vector< std::vector< double > > * get_stats_target()
    Definition: flock-meat.hpp:124
    Flock::nfuns
    size_t nfuns() const noexcept
    Definition: flock-meat.hpp:193
    @@ -451,7 +452,6 @@
    Flock::nterms
    size_t nterms() const
    Definition: flock-meat.hpp:235
    Flock::get_model
    PhyloModel * get_model()
    Definition: flock-meat.hpp:131
    Flock::initialized
    bool initialized
    Definition: flock-bones.hpp:19
    -
    Flock::get_stats_support
    std::vector< std::vector< double > > * get_stats_support()
    Definition: flock-meat.hpp:117
    Flock::support_size
    size_t support_size() const noexcept
    Definition: flock-meat.hpp:243
    Flock::likelihood_joint
    double likelihood_joint(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true, size_t ncores=1u)
    Returns the joint likelihood of the model.
    Definition: flock-meat.hpp:138
    Flock::get_support_fun
    PhyloSupport * get_support_fun()
    Definition: flock-meat.hpp:110
    @@ -474,7 +474,7 @@ diff --git a/formula_8hpp.html b/formula_8hpp.html index cb6c53aac..f7173cb9b 100644 --- a/formula_8hpp.html +++ b/formula_8hpp.html @@ -206,7 +206,7 @@

    Transition effects

    diff --git a/formula_8hpp_source.html b/formula_8hpp_source.html index 65ba6ce02..76c84c820 100644 --- a/formula_8hpp_source.html +++ b/formula_8hpp_source.html @@ -288,7 +288,7 @@ diff --git a/freqtable_8hpp.html b/freqtable_8hpp.html index ddee2663b..f53d3673a 100644 --- a/freqtable_8hpp.html +++ b/freqtable_8hpp.html @@ -122,7 +122,7 @@ diff --git a/freqtable_8hpp_source.html b/freqtable_8hpp_source.html index 6919642e4..6e3efeed3 100644 --- a/freqtable_8hpp_source.html +++ b/freqtable_8hpp_source.html @@ -356,7 +356,7 @@ diff --git a/functions.html b/functions.html index 642f3a780..a4809c6ed 100644 --- a/functions.html +++ b/functions.html @@ -159,7 +159,7 @@

    - a -

      diff --git a/functions_b.html b/functions_b.html index e014c8d69..4320b4ae3 100644 --- a/functions_b.html +++ b/functions_b.html @@ -192,7 +192,7 @@

      - b -

        diff --git a/functions_c.html b/functions_c.html index 713cea8ff..3948ff909 100644 --- a/functions_c.html +++ b/functions_c.html @@ -203,7 +203,7 @@

        - c -

          diff --git a/functions_d.html b/functions_d.html index 5362e9b9c..519609864 100644 --- a/functions_d.html +++ b/functions_d.html @@ -166,7 +166,7 @@

          - d -

            diff --git a/functions_e.html b/functions_e.html index d145622cb..a3cf58e12 100644 --- a/functions_e.html +++ b/functions_e.html @@ -137,7 +137,7 @@

            - e -

              diff --git a/functions_f.html b/functions_f.html index ffe903315..eb3fc8003 100644 --- a/functions_f.html +++ b/functions_f.html @@ -113,7 +113,7 @@

              - f -

                diff --git a/functions_func.html b/functions_func.html index 313c4fe99..c74518101 100644 --- a/functions_func.html +++ b/functions_func.html @@ -140,7 +140,7 @@

                - a -

                  diff --git a/functions_func_b.html b/functions_func_b.html index 9a64bab62..8097ffff9 100644 --- a/functions_func_b.html +++ b/functions_func_b.html @@ -151,7 +151,7 @@

                  - b -

                    diff --git a/functions_func_c.html b/functions_func_c.html index 35add8d54..dee5dedb9 100644 --- a/functions_func_c.html +++ b/functions_func_c.html @@ -155,7 +155,7 @@

                    - c -

                      diff --git a/functions_func_d.html b/functions_func_d.html index 5530fa777..89cb46e58 100644 --- a/functions_func_d.html +++ b/functions_func_d.html @@ -129,7 +129,7 @@

                      - d -

                        diff --git a/functions_func_e.html b/functions_func_e.html index cff912fdc..e5df48393 100644 --- a/functions_func_e.html +++ b/functions_func_e.html @@ -122,7 +122,7 @@

                        - e -

                          diff --git a/functions_func_f.html b/functions_func_f.html index 8586c1751..f9d1f618d 100644 --- a/functions_func_f.html +++ b/functions_func_f.html @@ -110,7 +110,7 @@

                          - f -

                            diff --git a/functions_func_g.html b/functions_func_g.html index 48c81ddee..4e886d748 100644 --- a/functions_func_g.html +++ b/functions_func_g.html @@ -133,7 +133,7 @@

                            - g -

                              , Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                            • get_counts() -: Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > +: Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                            • get_current_stats() : Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > @@ -242,8 +242,8 @@

                              - g -

                                : Geese
                              • get_stats_support() -: Flock -, Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > +: Flock +, Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                              • get_stats_target() : Flock @@ -272,7 +272,7 @@

                                - g -

                                  diff --git a/functions_func_i.html b/functions_func_i.html index 2508fda4a..236e47f1b 100644 --- a/functions_func_i.html +++ b/functions_func_i.html @@ -151,7 +151,7 @@

                                  - i -

                                    diff --git a/functions_func_l.html b/functions_func_l.html index 6daa2b9d6..49950cf84 100644 --- a/functions_func_l.html +++ b/functions_func_l.html @@ -117,7 +117,7 @@

                                    - l -

                                      diff --git a/functions_func_m.html b/functions_func_m.html index d62df7e01..193a7ad4e 100644 --- a/functions_func_m.html +++ b/functions_func_m.html @@ -110,7 +110,7 @@

                                      - m -

                                        diff --git a/functions_func_n.html b/functions_func_n.html index 726aead42..42c975426 100644 --- a/functions_func_n.html +++ b/functions_func_n.html @@ -166,7 +166,7 @@

                                        - n -

                                          diff --git a/functions_func_o.html b/functions_func_o.html index 69c686d66..842ac6e86 100644 --- a/functions_func_o.html +++ b/functions_func_o.html @@ -228,7 +228,7 @@

                                          - o -

                                            diff --git a/functions_func_p.html b/functions_func_p.html index 49d046feb..d2c9ecc71 100644 --- a/functions_func_p.html +++ b/functions_func_p.html @@ -158,7 +158,7 @@

                                            - p -

                                              diff --git a/functions_func_r.html b/functions_func_r.html index acdf9f375..fb072b72f 100644 --- a/functions_func_r.html +++ b/functions_func_r.html @@ -136,7 +136,7 @@

                                              - r -

                                                diff --git a/functions_func_s.html b/functions_func_s.html index e583383cc..65a54f8f1 100644 --- a/functions_func_s.html +++ b/functions_func_s.html @@ -189,7 +189,7 @@

                                                - s -

                                                  diff --git a/functions_func_t.html b/functions_func_t.html index 25b1ac93f..f8f0435f0 100644 --- a/functions_func_t.html +++ b/functions_func_t.html @@ -116,7 +116,7 @@

                                                  - t -

                                                    diff --git a/functions_func_u.html b/functions_func_u.html index 8057ce09c..a9f244c28 100644 --- a/functions_func_u.html +++ b/functions_func_u.html @@ -107,7 +107,7 @@

                                                    - u -

                                                      diff --git a/functions_func_z.html b/functions_func_z.html index 48c108b0d..a36c1e6d1 100644 --- a/functions_func_z.html +++ b/functions_func_z.html @@ -109,7 +109,7 @@

                                                      - z -

                                                        diff --git a/functions_func_~.html b/functions_func_~.html index b61df24d3..0db8755a3 100644 --- a/functions_func_~.html +++ b/functions_func_~.html @@ -194,7 +194,7 @@

                                                        - ~ -

                                                          diff --git a/functions_g.html b/functions_g.html index 54e2e7e1b..367e12565 100644 --- a/functions_g.html +++ b/functions_g.html @@ -133,7 +133,7 @@

                                                          - g -

                                                            , Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                                                          • get_counts() -: Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > +: Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                                                          • get_current_stats() : Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > @@ -242,8 +242,8 @@

                                                            - g -

                                                              : Geese
                                                            • get_stats_support() -: Flock -, Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > +: Flock +, Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                                                            • get_stats_target() : Flock @@ -272,7 +272,7 @@

                                                              - g -

                                                                diff --git a/functions_h.html b/functions_h.html index edca85484..2aed74081 100644 --- a/functions_h.html +++ b/functions_h.html @@ -110,7 +110,7 @@

                                                                - h -

                                                                  diff --git a/functions_i.html b/functions_i.html index d199e8c4e..0ae3cb175 100644 --- a/functions_i.html +++ b/functions_i.html @@ -171,7 +171,7 @@

                                                                  - i -

                                                                    diff --git a/functions_k.html b/functions_k.html index 29f1c4b60..90beacf02 100644 --- a/functions_k.html +++ b/functions_k.html @@ -104,7 +104,7 @@

                                                                    - k -

                                                                      diff --git a/functions_l.html b/functions_l.html index b09a92e2c..b4b81bf6c 100644 --- a/functions_l.html +++ b/functions_l.html @@ -124,7 +124,7 @@

                                                                      - l -

                                                                        diff --git a/functions_m.html b/functions_m.html index 9700d3f2f..4781c3550 100644 --- a/functions_m.html +++ b/functions_m.html @@ -123,7 +123,7 @@

                                                                        - m -

                                                                          diff --git a/functions_n.html b/functions_n.html index b167d19a3..901bc0ff5 100644 --- a/functions_n.html +++ b/functions_n.html @@ -200,7 +200,7 @@

                                                                          - n -

                                                                            diff --git a/functions_o.html b/functions_o.html index 12031a488..4d637673e 100644 --- a/functions_o.html +++ b/functions_o.html @@ -237,7 +237,7 @@

                                                                            - o -

                                                                              diff --git a/functions_p.html b/functions_p.html index 9080c8bf3..5f35028d5 100644 --- a/functions_p.html +++ b/functions_p.html @@ -182,7 +182,7 @@

                                                                              - p -

                                                                                diff --git a/functions_r.html b/functions_r.html index b405289c9..60b71ea9d 100644 --- a/functions_r.html +++ b/functions_r.html @@ -153,7 +153,7 @@

                                                                                - r -

                                                                                  diff --git a/functions_rela.html b/functions_rela.html index 9e54d606a..81209e0cb 100644 --- a/functions_rela.html +++ b/functions_rela.html @@ -137,7 +137,7 @@ diff --git a/functions_s.html b/functions_s.html index 5166d8a91..bb86b4916 100644 --- a/functions_s.html +++ b/functions_s.html @@ -167,11 +167,17 @@

                                                                                  - s -

                                                                                    : NodeData
                                                                                  • stats_support -: Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > +: Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                                                                                  • stats_support_n_arrays : Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                                                                                    • +
                                                                                  • stats_support_sizes +: Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > +
                                                                                    • +
                                                                                  • stats_support_sizes_acc +: Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > +
                                                                                  • stats_target : Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                                                                                    • @@ -213,7 +219,7 @@

                                                                                    - s -

                                                                                      diff --git a/functions_t.html b/functions_t.html index c1eaaefdc..467fc9c97 100644 --- a/functions_t.html +++ b/functions_t.html @@ -125,7 +125,7 @@

                                                                                      - t -

                                                                                        diff --git a/functions_u.html b/functions_u.html index c9aa5fa81..4016a27e1 100644 --- a/functions_u.html +++ b/functions_u.html @@ -110,7 +110,7 @@

                                                                                        - u -

                                                                                          diff --git a/functions_v.html b/functions_v.html index 9cc8cc643..18b747284 100644 --- a/functions_v.html +++ b/functions_v.html @@ -116,7 +116,7 @@

                                                                                          - v -

                                                                                            diff --git a/functions_vars.html b/functions_vars.html index 1f094771a..393d8c183 100644 --- a/functions_vars.html +++ b/functions_vars.html @@ -430,11 +430,17 @@

                                                                                            - s -

                                                                                              : NodeData
                                                                                            • stats_support -: Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > +: Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                                                                                            • stats_support_n_arrays : Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
                                                                                              • +
                                                                                            • stats_support_sizes +: Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > +
                                                                                              • +
                                                                                            • stats_support_sizes_acc +: Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > +
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                                                                                                        • models
                                                                                                        • geese
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                                                                                                        • models
                                                                                                        • geese
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d1450ec80..605d57f05 100644 Binary files a/latex/class_d_e_f_m_rule_dyn_data__coll__graph.pdf and b/latex/class_d_e_f_m_rule_dyn_data__coll__graph.pdf differ diff --git a/latex/class_d_e_f_m_rule_dyn_data__inherit__graph.pdf b/latex/class_d_e_f_m_rule_dyn_data__inherit__graph.pdf index d1450ec80..605d57f05 100644 Binary files a/latex/class_d_e_f_m_rule_dyn_data__inherit__graph.pdf and b/latex/class_d_e_f_m_rule_dyn_data__inherit__graph.pdf differ diff --git a/latex/class_flock.tex b/latex/class_flock.tex index be23c1b0a..9a0137c5a 100644 --- a/latex/class_flock.tex +++ b/latex/class_flock.tex @@ -26,7 +26,7 @@ \item \mbox{\hyperlink{geese-types_8hpp_ae66aa4dbb13f90c073bc0d5c3df58d83}{Phylo\+Support}} $\ast$ \mbox{\hyperlink{class_flock_add876188b5f16af037525e71eaf7fc05}{get\+\_\+support\+\_\+fun}} () \item -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_flock_ab5f4c94b0484772321b3856debdf3a58}{get\+\_\+stats\+\_\+support}} () +std\+::vector$<$ double $>$ $\ast$ \mbox{\hyperlink{class_flock_a15096ee181dfa46c9dd30aacd41c0dc5}{get\+\_\+stats\+\_\+support}} () \item std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_flock_a26462201318e4bf34756a2a14e2cc3fb}{get\+\_\+stats\+\_\+target}} () \item @@ -164,11 +164,11 @@ Definition at line 131 of file flock-\/meat.\+hpp. -\mbox{\Hypertarget{class_flock_ab5f4c94b0484772321b3856debdf3a58}\label{class_flock_ab5f4c94b0484772321b3856debdf3a58}} +\mbox{\Hypertarget{class_flock_a15096ee181dfa46c9dd30aacd41c0dc5}\label{class_flock_a15096ee181dfa46c9dd30aacd41c0dc5}} \index{Flock@{Flock}!get\_stats\_support@{get\_stats\_support}} \index{get\_stats\_support@{get\_stats\_support}!Flock@{Flock}} \doxysubsubsection{\texorpdfstring{get\_stats\_support()}{get\_stats\_support()}} -{\footnotesize\ttfamily std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ Flock\+::get\+\_\+stats\+\_\+support (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +{\footnotesize\ttfamily std\+::vector$<$ double $>$ $\ast$ Flock\+::get\+\_\+stats\+\_\+support (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} diff --git a/latex/class_model.tex b/latex/class_model.tex index 3a8d5a403..d1500062e 100644 --- a/latex/class_model.tex +++ b/latex/class_model.tex @@ -168,7 +168,7 @@ \item std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_a5414f4d58c598c844bf0e7885e06488a}{get\+\_\+stats\+\_\+target}} () \begin{DoxyCompactList}\small\item\em Raw pointers to the support and target statistics. \end{DoxyCompactList}\item -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_a35e9c4103deb9e2deda35c2c61b30289}{get\+\_\+stats\+\_\+support}} () +std\+::vector$<$ double $>$ $\ast$ \mbox{\hyperlink{class_model_a689e68b499eb7bfd92a7f8318f51c121}{get\+\_\+stats\+\_\+support}} () \item std\+::vector$<$ size\+\_\+t $>$ $\ast$ \mbox{\hyperlink{class_model_ab705e7531998b61c1358c6cbef773e0d}{get\+\_\+arrays2support}} () \item @@ -228,8 +228,12 @@ \item term k \end{DoxyItemize}}\begin{DoxyCompactItemize} \item -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ \mbox{\hyperlink{class_model_a39aa4fd9a3b78ec2c11b2766979df35e}{stats\+\_\+support}} +std\+::vector$<$ double $>$ \mbox{\hyperlink{class_model_a3b96c8ef06619593e644c5d41d02b106}{stats\+\_\+support}} \begin{DoxyCompactList}\small\item\em Sufficient statistics of the model (support) \end{DoxyCompactList}\item +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_model_ac98158e9aa3d55dbd366c6721fe3343f}{stats\+\_\+support\+\_\+sizes}} +\begin{DoxyCompactList}\small\item\em Number of vectors included in the support. \end{DoxyCompactList}\item +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_model_a66be2819cbf561e657b372e04721acc9}{stats\+\_\+support\+\_\+sizes\+\_\+acc}} +\begin{DoxyCompactList}\small\item\em Accumulated number of vectors included in the support. \end{DoxyCompactList}\item std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_model_a70f54e805f1ecf2ac823c6abe8f4a503}{stats\+\_\+support\+\_\+n\+\_\+arrays}} \begin{DoxyCompactList}\small\item\em Number of arrays included per support. \end{DoxyCompactList}\item std\+::vector$<$ std\+::vector$<$ double $>$ $>$ \mbox{\hyperlink{class_model_a23a878c633e4ed59f4921254d6c85e29}{stats\+\_\+target}} @@ -300,7 +304,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 171 of file model-\/meat.\+hpp. +Definition at line 176 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a5026c5d72a07db2eff58689fe101a57d}\label{class_model_a5026c5d72a07db2eff58689fe101a57d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!Model@{Model}} @@ -311,7 +315,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 205 of file model-\/meat.\+hpp. +Definition at line 212 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a43b71b392309bd71ed7c49f783b8815b}\label{class_model_a43b71b392309bd71ed7c49f783b8815b}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!Model@{Model}} @@ -322,7 +326,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 243 of file model-\/meat.\+hpp. +Definition at line 252 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a58dc9105b487e0e2d2cb3faa16397ae2}\label{class_model_a58dc9105b487e0e2d2cb3faa16397ae2}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!````~Model@{$\sim$Model}} @@ -333,7 +337,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 170 of file model-\/bones.\+hpp. +Definition at line 172 of file model-\/bones.\+hpp. @@ -361,7 +365,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \end{DoxyReturn} When computing with the powerset, we need to grow the corresponding vectors on the fly -Definition at line 476 of file model-\/meat.\+hpp. +Definition at line 488 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a2326ca9975e29d3cf1902b6e60c613b9}\label{class_model_a2326ca9975e29d3cf1902b6e60c613b9}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_counter@{add\_counter}} @@ -372,7 +376,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 352 of file model-\/meat.\+hpp. +Definition at line 363 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a60bc7a1e36ed90ff0af62a3999b9d06f}\label{class_model_a60bc7a1e36ed90ff0af62a3999b9d06f}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_counter@{add\_counter}} @@ -383,7 +387,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 361 of file model-\/meat.\+hpp. +Definition at line 372 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a5e0ab8493a4aeecacc96d666089c543d}\label{class_model_a5e0ab8493a4aeecacc96d666089c543d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_hasher@{add\_hasher}} @@ -394,7 +398,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 396 of file model-\/meat.\+hpp. +Definition at line 407 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_af9b85db739f6947861fe123136c11c07}\label{class_model_af9b85db739f6947861fe123136c11c07}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_rule@{add\_rule}} @@ -405,7 +409,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 407 of file model-\/meat.\+hpp. +Definition at line 418 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a8a27b1ce7513359b61840a15fc661575}\label{class_model_a8a27b1ce7513359b61840a15fc661575}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_rule@{add\_rule}} @@ -423,7 +427,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 435 of file model-\/meat.\+hpp. +Definition at line 446 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a6df0512038f2eae91f67ef151ae95328}\label{class_model_a6df0512038f2eae91f67ef151ae95328}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_rule\_dyn@{add\_rule\_dyn}} @@ -434,7 +438,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 444 of file model-\/meat.\+hpp. +Definition at line 455 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a61b7baf9d45f885832db74fb9cd99c4d}\label{class_model_a61b7baf9d45f885832db74fb9cd99c4d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!colnames@{colnames}} @@ -445,7 +449,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1133 of file model-\/meat.\+hpp. +Definition at line 1193 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a3f13aa5080ce580a11892cf6a69fee64}\label{class_model_a3f13aa5080ce580a11892cf6a69fee64}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!conditional\_prob@{conditional\_prob}} @@ -476,7 +480,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \end{DoxyReturn} -Definition at line 1399 of file model-\/meat.\+hpp. +Definition at line 1485 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a5ab59e34639b590094bc2716d056e78c}\label{class_model_a5ab59e34639b590094bc2716d056e78c}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!gen\_key@{gen\_key}} @@ -487,7 +491,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 345 of file model-\/meat.\+hpp. +Definition at line 356 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_ab705e7531998b61c1358c6cbef773e0d}\label{class_model_ab705e7531998b61c1358c6cbef773e0d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_arrays2support@{get\_arrays2support}} @@ -498,7 +502,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1472 of file model-\/meat.\+hpp. +Definition at line 1558 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a2345f3e51002d81bd60cb0b14f006dbd}\label{class_model_a2345f3e51002d81bd60cb0b14f006dbd}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_counters@{get\_counters}} @@ -509,7 +513,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1437 of file model-\/meat.\+hpp. +Definition at line 1523 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_acaeee0e986e406918d1b07e329d4e28d}\label{class_model_acaeee0e986e406918d1b07e329d4e28d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_normalizing\_constants@{get\_normalizing\_constants}} @@ -520,7 +524,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 951 of file model-\/meat.\+hpp. +Definition at line 1000 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_aefb5399f2e396d34eb523e00c7d89140}\label{class_model_aefb5399f2e396d34eb523e00c7d89140}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset@{get\_pset}} @@ -531,7 +535,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 959 of file model-\/meat.\+hpp. +Definition at line 1008 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a567fbbecd8a77f62ada9535f1e56588f}\label{class_model_a567fbbecd8a77f62ada9535f1e56588f}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_arrays@{get\_pset\_arrays}} @@ -542,7 +546,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1479 of file model-\/meat.\+hpp. +Definition at line 1565 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a248d9516ebc938e2ab5df4f4f9d78121}\label{class_model_a248d9516ebc938e2ab5df4f4f9d78121}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_probs@{get\_pset\_probs}} @@ -553,7 +557,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1491 of file model-\/meat.\+hpp. +Definition at line 1577 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a453d05dbfcef337c385afc7f2000d56b}\label{class_model_a453d05dbfcef337c385afc7f2000d56b}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_stats@{get\_pset\_stats}} @@ -568,7 +572,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1485 of file model-\/meat.\+hpp. +Definition at line 1571 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_ab19a8398b4f3fb8a21f8ed89aec2fbf7}\label{class_model_ab19a8398b4f3fb8a21f8ed89aec2fbf7}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_stats@{get\_pset\_stats}} @@ -579,7 +583,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 973 of file model-\/meat.\+hpp. +Definition at line 1022 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a02cac4f649946705bfb4d69bc3a3576f}\label{class_model_a02cac4f649946705bfb4d69bc3a3576f}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rengine@{get\_rengine}} @@ -590,7 +594,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1432 of file model-\/meat.\+hpp. +Definition at line 1518 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a8796a5e54c0ba505129db2bc1e452d0d}\label{class_model_a8796a5e54c0ba505129db2bc1e452d0d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rules@{get\_rules}} @@ -601,7 +605,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1442 of file model-\/meat.\+hpp. +Definition at line 1528 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_aff4c85b28ba08c67b6d3308cf94fc30a}\label{class_model_aff4c85b28ba08c67b6d3308cf94fc30a}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rules\_dyn@{get\_rules\_dyn}} @@ -612,18 +616,18 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1447 of file model-\/meat.\+hpp. +Definition at line 1533 of file model-\/meat.\+hpp. -\mbox{\Hypertarget{class_model_a35e9c4103deb9e2deda35c2c61b30289}\label{class_model_a35e9c4103deb9e2deda35c2c61b30289}} +\mbox{\Hypertarget{class_model_a689e68b499eb7bfd92a7f8318f51c121}\label{class_model_a689e68b499eb7bfd92a7f8318f51c121}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_stats\_support@{get\_stats\_support}} \index{get\_stats\_support@{get\_stats\_support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_stats\_support()}{get\_stats\_support()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+stats\+\_\+support\hspace{0.3cm}{\ttfamily [inline]}} +std\+::vector$<$ double $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+stats\+\_\+support\hspace{0.3cm}{\ttfamily [inline]}} -Definition at line 1465 of file model-\/meat.\+hpp. +Definition at line 1551 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a5414f4d58c598c844bf0e7885e06488a}\label{class_model_a5414f4d58c598c844bf0e7885e06488a}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_stats\_target@{get\_stats\_target}} @@ -638,7 +642,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D The support of the model is stored as a vector of vector$<$double$>$. Each element of it contains the support for an specific type of array included. It represents an array of size {\ttfamily (k + 1) x n unique elements}, with the data stored by-\/row. The last element of each entry corresponds to the weights, i.\+e., the frequency with which such sufficient statistics are observed in the support. -Definition at line 1458 of file model-\/meat.\+hpp. +Definition at line 1544 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a5a887a9d87a1f86ccc783fd27a0a1ddc}\label{class_model_a5a887a9d87a1f86ccc783fd27a0a1ddc}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_support\_fun@{get\_support\_fun}} @@ -649,7 +653,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1453 of file model-\/meat.\+hpp. +Definition at line 1539 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a2b216befc5a05c5aa6607b9b617b14f6}\label{class_model_a2b216befc5a05c5aa6607b9b617b14f6}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}} @@ -660,7 +664,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 657 of file model-\/meat.\+hpp. +Definition at line 697 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a085429b8f8d8d81a7f742fdc3deceeee}\label{class_model_a085429b8f8d8d81a7f742fdc3deceeee}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}} @@ -671,7 +675,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 803 of file model-\/meat.\+hpp. +Definition at line 847 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a6640d5add2e5e2004202b81866339a3a}\label{class_model_a6640d5add2e5e2004202b81866339a3a}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}} @@ -682,7 +686,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 612 of file model-\/meat.\+hpp. +Definition at line 650 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a6ed252b0bcc46668bee04f543bbafdae}\label{class_model_a6ed252b0bcc46668bee04f543bbafdae}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}} @@ -693,7 +697,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 739 of file model-\/meat.\+hpp. +Definition at line 781 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a7ecc7893f532a3fc4cb4149eb587dc3e}\label{class_model_a7ecc7893f532a3fc4cb4149eb587dc3e}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood\_total@{likelihood\_total}} @@ -704,7 +708,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 873 of file model-\/meat.\+hpp. +Definition at line 919 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a6a1213e74dd4d7ce7b0071a664b6f3b3}\label{class_model_a6a1213e74dd4d7ce7b0071a664b6f3b3}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nrules@{nrules}} @@ -715,7 +719,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1104 of file model-\/meat.\+hpp. +Definition at line 1163 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a9a9ea5238be86c147f9ec264eb51b984}\label{class_model_a9a9ea5238be86c147f9ec264eb51b984}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nrules\_dyn@{nrules\_dyn}} @@ -726,7 +730,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1112 of file model-\/meat.\+hpp. +Definition at line 1171 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a79ebbea31dc3742c37eba173c25acd5d}\label{class_model_a79ebbea31dc3742c37eba173c25acd5d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nterms@{nterms}} @@ -737,7 +741,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1093 of file model-\/meat.\+hpp. +Definition at line 1152 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a4cf7b0d8d1c1d5996e09b3dbf7599cd6}\label{class_model_a4cf7b0d8d1c1d5996e09b3dbf7599cd6}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!operator=@{operator=}} @@ -748,7 +752,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 287 of file model-\/meat.\+hpp. +Definition at line 298 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a9b882a97407460beb9b97405fac98dd9}\label{class_model_a9b882a97407460beb9b97405fac98dd9}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!print@{print}} @@ -763,7 +767,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1015 of file model-\/meat.\+hpp. +Definition at line 1074 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a72f41dd130d67b171acc433fa288de78}\label{class_model_a72f41dd130d67b171acc433fa288de78}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!print\_stats@{print\_stats}} @@ -774,7 +778,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 985 of file model-\/meat.\+hpp. +Definition at line 1034 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a2adac6eb2d37bd67d5f0222374ce193d}\label{class_model_a2adac6eb2d37bd67d5f0222374ce193d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!sample@{sample}} @@ -785,7 +789,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D When computing with the powerset, we need to grow the corresponding vectors on the fly -Definition at line 1230 of file model-\/meat.\+hpp. +Definition at line 1290 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_ad6d0a2c68540fe6480337a606c14cea6}\label{class_model_ad6d0a2c68540fe6480337a606c14cea6}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!sample@{sample}} @@ -796,7 +800,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1150 of file model-\/meat.\+hpp. +Definition at line 1210 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a93632a05117d5b862d082885015c9363}\label{class_model_a93632a05117d5b862d082885015c9363}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_counters@{set\_counters}} @@ -807,7 +811,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 378 of file model-\/meat.\+hpp. +Definition at line 389 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_af86cd3bfb4b3c929a263090950435a3c}\label{class_model_af86cd3bfb4b3c929a263090950435a3c}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rengine@{set\_rengine}} @@ -818,7 +822,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 140 of file model-\/bones.\+hpp. +Definition at line 142 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_a696fd8dc85423d35fee3b9718877abb4}\label{class_model_a696fd8dc85423d35fee3b9718877abb4}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rules@{set\_rules}} @@ -829,7 +833,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 417 of file model-\/meat.\+hpp. +Definition at line 428 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_ab200cf9d28983471fa8264fc90071bad}\label{class_model_ab200cf9d28983471fa8264fc90071bad}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rules\_dyn@{set\_rules\_dyn}} @@ -840,7 +844,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 459 of file model-\/meat.\+hpp. +Definition at line 470 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_afe7f86754248416469456f98f493c9b5}\label{class_model_afe7f86754248416469456f98f493c9b5}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_seed@{set\_seed}} @@ -851,7 +855,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 150 of file model-\/bones.\+hpp. +Definition at line 152 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_aeb964da3f921dae949d1f903eb7accbc}\label{class_model_aeb964da3f921dae949d1f903eb7accbc}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_transform\_model@{set\_transform\_model}} @@ -879,7 +883,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \end{DoxyParams} -Definition at line 1497 of file model-\/meat.\+hpp. +Definition at line 1583 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a1d45ad43d7aa468deb326074e110524b}\label{class_model_a1d45ad43d7aa468deb326074e110524b}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!size@{size}} @@ -890,7 +894,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1076 of file model-\/meat.\+hpp. +Definition at line 1135 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a0261a55996a1707b9bae97544f1fabf8}\label{class_model_a0261a55996a1707b9bae97544f1fabf8}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!size\_unique@{size\_unique}} @@ -901,7 +905,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1084 of file model-\/meat.\+hpp. +Definition at line 1143 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a3e8c4587b259d60fcf7c70c7e3f55082}\label{class_model_a3e8c4587b259d60fcf7c70c7e3f55082}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!store\_psets@{store\_psets}} @@ -912,7 +916,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 337 of file model-\/meat.\+hpp. +Definition at line 350 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a98e5f6188b1d3235efa61b72f4562741}\label{class_model_a98e5f6188b1d3235efa61b72f4562741}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!support\_size@{support\_size}} @@ -923,7 +927,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 1120 of file model-\/meat.\+hpp. +Definition at line 1179 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a9f17772e230a4790ee6b7d028eca7e26}\label{class_model_a9f17772e230a4790ee6b7d028eca7e26}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model@{transform\_model}} @@ -959,7 +963,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 65 of file model-\/bones.\+hpp. +Definition at line 67 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_a1c7792e1ca105ef8599b56b302823962}\label{class_model_a1c7792e1ca105ef8599b56b302823962}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!counter\_fun@{counter\_fun}} @@ -970,7 +974,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 95 of file model-\/bones.\+hpp. +Definition at line 97 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_aeea40760779cd097dbebd645399be966}\label{class_model_aeea40760779cd097dbebd645399be966}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!counters@{counters}} @@ -981,7 +985,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 91 of file model-\/bones.\+hpp. +Definition at line 93 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_a8f4339d329869cf9d1a11d0d53a6fcf1}\label{class_model_a8f4339d329869cf9d1a11d0d53a6fcf1}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!delete\_counters@{delete\_counters}} @@ -992,7 +996,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 103 of file model-\/bones.\+hpp. +Definition at line 105 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_a547c849fa590417dbf75f82531d14e4e}\label{class_model_a547c849fa590417dbf75f82531d14e4e}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!delete\_rengine@{delete\_rengine}} @@ -1014,7 +1018,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 104 of file model-\/bones.\+hpp. +Definition at line 106 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_a8eb1f7d2e318e598ff8800f71b2732ea}\label{class_model_a8eb1f7d2e318e598ff8800f71b2732ea}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!delete\_rules\_dyn@{delete\_rules\_dyn}} @@ -1025,7 +1029,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 105 of file model-\/bones.\+hpp. +Definition at line 107 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_ae2e78bfa4561d4364706178aed32db74}\label{class_model_ae2e78bfa4561d4364706178aed32db74}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!first\_calc\_done@{first\_calc\_done}} @@ -1036,7 +1040,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 101 of file model-\/bones.\+hpp. +Definition at line 103 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_ac77f3031ba985a28f6d3328a4f9a5b1c}\label{class_model_ac77f3031ba985a28f6d3328a4f9a5b1c}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!keys2support@{keys2support}} @@ -1051,7 +1055,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D This is of the same length as the vector {\ttfamily stats\+\_\+target}. -Definition at line 72 of file model-\/bones.\+hpp. +Definition at line 74 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_ad464c4495fd5646af2bab8a8cd328ac0}\label{class_model_ad464c4495fd5646af2bab8a8cd328ac0}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!normalizing\_constants@{normalizing\_constants}} @@ -1062,7 +1066,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 100 of file model-\/bones.\+hpp. +Definition at line 102 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_a9b5a93723c718d4d9f710c5340c7ef0f}\label{class_model_a9b5a93723c718d4d9f710c5340c7ef0f}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!params\_last@{params\_last}} @@ -1077,7 +1081,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 99 of file model-\/bones.\+hpp. +Definition at line 101 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_ab39eb3f5a95b9f142af51df3b30e76d7}\label{class_model_ab39eb3f5a95b9f142af51df3b30e76d7}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!pset\_arrays@{pset\_arrays}} @@ -1092,7 +1096,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 81 of file model-\/bones.\+hpp. +Definition at line 83 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_af67b0d6d0c8c4d2d7e898b50692d4f9a}\label{class_model_af67b0d6d0c8c4d2d7e898b50692d4f9a}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!pset\_probs@{pset\_probs}} @@ -1107,7 +1111,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 83 of file model-\/bones.\+hpp. +Definition at line 85 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_a69ca83eded62fd9c4e9133dc149430ae}\label{class_model_a69ca83eded62fd9c4e9133dc149430ae}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!pset\_stats@{pset\_stats}} @@ -1122,7 +1126,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 82 of file model-\/bones.\+hpp. +Definition at line 84 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_aaccc1686d1d58f4fff36fb45b4e18422}\label{class_model_aaccc1686d1d58f4fff36fb45b4e18422}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!rengine@{rengine}} @@ -1144,7 +1148,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 92 of file model-\/bones.\+hpp. +Definition at line 94 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_a11d9090903bfe8b35db92fe2579c2de3}\label{class_model_a11d9090903bfe8b35db92fe2579c2de3}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!rules\_dyn@{rules\_dyn}} @@ -1155,14 +1159,14 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 93 of file model-\/bones.\+hpp. +Definition at line 95 of file model-\/bones.\+hpp. -\mbox{\Hypertarget{class_model_a39aa4fd9a3b78ec2c11b2766979df35e}\label{class_model_a39aa4fd9a3b78ec2c11b2766979df35e}} +\mbox{\Hypertarget{class_model_a3b96c8ef06619593e644c5d41d02b106}\label{class_model_a3b96c8ef06619593e644c5d41d02b106}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_support@{stats\_support}} \index{stats\_support@{stats\_support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{stats\_support}{stats\_support}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::stats\+\_\+support\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ double $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::stats\+\_\+support\hspace{0.3cm}{\ttfamily [protected]}} @@ -1185,8 +1189,38 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D +Definition at line 65 of file model-\/bones.\+hpp. + +\mbox{\Hypertarget{class_model_ac98158e9aa3d55dbd366c6721fe3343f}\label{class_model_ac98158e9aa3d55dbd366c6721fe3343f}} +\index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_support\_sizes@{stats\_support\_sizes}} +\index{stats\_support\_sizes@{stats\_support\_sizes}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} +\doxysubsubsection{\texorpdfstring{stats\_support\_sizes}{stats\_support\_sizes}} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::stats\+\_\+support\+\_\+sizes\hspace{0.3cm}{\ttfamily [protected]}} + + + +Number of vectors included in the support. + + + Definition at line 63 of file model-\/bones.\+hpp. +\mbox{\Hypertarget{class_model_a66be2819cbf561e657b372e04721acc9}\label{class_model_a66be2819cbf561e657b372e04721acc9}} +\index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_support\_sizes\_acc@{stats\_support\_sizes\_acc}} +\index{stats\_support\_sizes\_acc@{stats\_support\_sizes\_acc}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} +\doxysubsubsection{\texorpdfstring{stats\_support\_sizes\_acc}{stats\_support\_sizes\_acc}} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::stats\+\_\+support\+\_\+sizes\+\_\+acc\hspace{0.3cm}{\ttfamily [protected]}} + + + +Accumulated number of vectors included in the support. + + + +Definition at line 64 of file model-\/bones.\+hpp. + \mbox{\Hypertarget{class_model_a23a878c633e4ed59f4921254d6c85e29}\label{class_model_a23a878c633e4ed59f4921254d6c85e29}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_target@{stats\_target}} \index{stats\_target@{stats\_target}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} @@ -1200,7 +1234,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 64 of file model-\/bones.\+hpp. +Definition at line 66 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_aaf2432f089c9c40fcb3e0fb3651d929e}\label{class_model_aaf2432f089c9c40fcb3e0fb3651d929e}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!support\_fun@{support\_fun}} @@ -1211,7 +1245,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 94 of file model-\/bones.\+hpp. +Definition at line 96 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_ab56e7e3a90d48c2c573ebdcbb01617fd}\label{class_model_ab56e7e3a90d48c2c573ebdcbb01617fd}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model\_fun@{transform\_model\_fun}} @@ -1237,7 +1271,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \end{DoxyReturn} -Definition at line 123 of file model-\/bones.\+hpp. +Definition at line 125 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_a029716dd943b3fc3de88eead66404b16}\label{class_model_a029716dd943b3fc3de88eead66404b16}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model\_term\_names@{transform\_model\_term\_names}} @@ -1248,7 +1282,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 125 of file model-\/bones.\+hpp. +Definition at line 127 of file model-\/bones.\+hpp. \mbox{\Hypertarget{class_model_a8218c8591c4e2a9787dec2b418281548}\label{class_model_a8218c8591c4e2a9787dec2b418281548}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!with\_pset@{with\_pset}} @@ -1259,7 +1293,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 80 of file model-\/bones.\+hpp. +Definition at line 82 of file model-\/bones.\+hpp. diff --git a/latex/class_model__coll__graph.pdf b/latex/class_model__coll__graph.pdf index a52e637d8..5ebaa773b 100644 Binary files a/latex/class_model__coll__graph.pdf and b/latex/class_model__coll__graph.pdf differ diff --git a/latex/class_node__coll__graph.pdf b/latex/class_node__coll__graph.pdf index fbd2d9719..6bbd50edf 100644 Binary files a/latex/class_node__coll__graph.pdf and b/latex/class_node__coll__graph.pdf differ diff --git a/latex/class_power_set__coll__graph.pdf b/latex/class_power_set__coll__graph.pdf index 6381fed02..e5516db17 100644 Binary files a/latex/class_power_set__coll__graph.pdf and b/latex/class_power_set__coll__graph.pdf differ diff --git a/latex/class_support.tex b/latex/class_support.tex index 6a1e680e7..57214b321 100644 --- a/latex/class_support.tex +++ b/latex/class_support.tex @@ -24,7 +24,7 @@ \item void \mbox{\hyperlink{class_support_a1f72e55e9f2ffbd5bb07ccecfa6ad876}{calc}} (std\+::vector$<$ Array\+\_\+\+Type $>$ $\ast$array\+\_\+bank=nullptr, std\+::vector$<$ double $>$ $\ast$stats\+\_\+bank=nullptr, size\+\_\+t max\+\_\+num\+\_\+elements\+\_\+=0u) \begin{DoxyCompactList}\small\item\em Computes the entire support. \end{DoxyCompactList}\item -std\+::vector$<$ double $>$ \mbox{\hyperlink{class_support_a47cc8dfe2705652a988cf77f0f27b43e}{get\+\_\+counts}} () const +const std\+::vector$<$ double $>$ \& \mbox{\hyperlink{class_support_aaaec4ce57d2d79265289ab8a7b6f60d4}{get\+\_\+counts}} () const \item std\+::vector$<$ double $>$ $\ast$ \mbox{\hyperlink{class_support_afc4fca55ca37dc97ed692687c38c7ce2}{get\+\_\+current\+\_\+stats}} () \begin{DoxyCompactList}\small\item\em List current statistics. \end{DoxyCompactList}\item @@ -303,18 +303,18 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, -Definition at line 594 of file support-\/meat.\+hpp. +Definition at line 593 of file support-\/meat.\+hpp. -\mbox{\Hypertarget{class_support_a47cc8dfe2705652a988cf77f0f27b43e}\label{class_support_a47cc8dfe2705652a988cf77f0f27b43e}} +\mbox{\Hypertarget{class_support_aaaec4ce57d2d79265289ab8a7b6f60d4}\label{class_support_aaaec4ce57d2d79265289ab8a7b6f60d4}} \index{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_counts@{get\_counts}} \index{get\_counts@{get\_counts}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_counts()}{get\_counts()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -std\+::vector$<$ double $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+counts\hspace{0.3cm}{\ttfamily [inline]}} +const std\+::vector$<$ double $>$ \& \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+counts\hspace{0.3cm}{\ttfamily [inline]}} -Definition at line 558 of file support-\/meat.\+hpp. +Definition at line 557 of file support-\/meat.\+hpp. \mbox{\Hypertarget{class_support_afc4fca55ca37dc97ed692687c38c7ce2}\label{class_support_afc4fca55ca37dc97ed692687c38c7ce2}} \index{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_current\_stats@{get\_current\_stats}} @@ -329,7 +329,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, -Definition at line 572 of file support-\/meat.\+hpp. +Definition at line 571 of file support-\/meat.\+hpp. \mbox{\Hypertarget{class_support_ac19420a6296244d85274261f39e4ceae}\label{class_support_ac19420a6296244d85274261f39e4ceae}} \index{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_data@{get\_data}} @@ -340,7 +340,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, -Definition at line 589 of file support-\/meat.\+hpp. +Definition at line 588 of file support-\/meat.\+hpp. \mbox{\Hypertarget{class_support_a368a9c7797e1a76c3ee150070e66c212}\label{class_support_a368a9c7797e1a76c3ee150070e66c212}} \index{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rules@{get\_rules}} @@ -355,7 +355,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, -Definition at line 599 of file support-\/meat.\+hpp. +Definition at line 598 of file support-\/meat.\+hpp. \mbox{\Hypertarget{class_support_a53daafcd49daac43c6e8841a8a17a05a}\label{class_support_a53daafcd49daac43c6e8841a8a17a05a}} \index{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rules\_dyn@{get\_rules\_dyn}} @@ -370,7 +370,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, -Definition at line 604 of file support-\/meat.\+hpp. +Definition at line 603 of file support-\/meat.\+hpp. 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{8.33.3.2}duplication}{209}{subsubsection.8.33.3.2}\protected@file@percent } @@ -2044,7 +2048,7 @@ \@writefile{toc}{\contentsline {subsubsection}{\numberline {8.41.3.7}eval\_rules\_dyn()}{238}{subsubsection.8.41.3.7}\protected@file@percent } \newlabel{class_support_a9f2237792f9688bf86ae89454048db9a}{{8.41.3.7}{238}{\texorpdfstring {eval\_rules\_dyn()}{eval\_rules\_dyn()}}{subsubsection.8.41.3.7}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {8.41.3.8}get\_counters()}{238}{subsubsection.8.41.3.8}\protected@file@percent } -\newlabel{class_support_a47cc8dfe2705652a988cf77f0f27b43e}{{8.41.3.8}{238}{\texorpdfstring {get\_counters()}{get\_counters()}}{subsubsection.8.41.3.8}{}} +\newlabel{class_support_aaaec4ce57d2d79265289ab8a7b6f60d4}{{8.41.3.8}{238}{\texorpdfstring {get\_counters()}{get\_counters()}}{subsubsection.8.41.3.8}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {8.41.3.9}get\_counts()}{238}{subsubsection.8.41.3.9}\protected@file@percent } \newlabel{class_support_afc4fca55ca37dc97ed692687c38c7ce2}{{8.41.3.9}{238}{\texorpdfstring {get\_counts()}{get\_counts()}}{subsubsection.8.41.3.9}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {8.41.3.10}get\_current\_stats()}{239}{subsubsection.8.41.3.10}\protected@file@percent } diff --git a/latex/refman.idx b/latex/refman.idx index 4c0210f24..f601767cf 100644 --- a/latex/refman.idx +++ b/latex/refman.idx @@ -1317,45 +1317,49 @@ \indexentry{stats\_support@{stats\_support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_support\_n\_arrays@{stats\_support\_n\_arrays}|hyperpage}{196} \indexentry{stats\_support\_n\_arrays@{stats\_support\_n\_arrays}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_target@{stats\_target}|hyperpage}{196} -\indexentry{stats\_target@{stats\_target}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_support\_sizes@{stats\_support\_sizes}|hyperpage}{196} +\indexentry{stats\_support\_sizes@{stats\_support\_sizes}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_support\_sizes\_acc@{stats\_support\_sizes\_acc}|hyperpage}{197} +\indexentry{stats\_support\_sizes\_acc@{stats\_support\_sizes\_acc}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{197} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_target@{stats\_target}|hyperpage}{197} +\indexentry{stats\_target@{stats\_target}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{197} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!support\_fun@{support\_fun}|hyperpage}{197} \indexentry{support\_fun@{support\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{197} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model\_fun@{transform\_model\_fun}|hyperpage}{197} \indexentry{transform\_model\_fun@{transform\_model\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{197} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model\_term\_names@{transform\_model\_term\_names}|hyperpage}{197} -\indexentry{transform\_model\_term\_names@{transform\_model\_term\_names}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{197} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model\_term\_names@{transform\_model\_term\_names}|hyperpage}{198} +\indexentry{transform\_model\_term\_names@{transform\_model\_term\_names}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{198} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!with\_pset@{with\_pset}|hyperpage}{198} \indexentry{with\_pset@{with\_pset}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{198} -\indexentry{NetCounterData@{NetCounterData}|hyperpage}{198} +\indexentry{NetCounterData@{NetCounterData}|hyperpage}{199} \indexentry{NetCounterData@{NetCounterData}!NetCounterData@{NetCounterData}|hyperpage}{199} \indexentry{NetCounterData@{NetCounterData}!NetCounterData@{NetCounterData}|hyperpage}{199} \indexentry{NetCounterData@{NetCounterData}!NetCounterData@{NetCounterData}|hyperpage}{199} \indexentry{NetCounterData@{NetCounterData}!NetCounterData@{NetCounterData}|hyperpage}{199} \indexentry{NetCounterData@{NetCounterData}!````~NetCounterData@{$\sim$NetCounterData}|hyperpage}{199} \indexentry{````~NetCounterData@{$\sim$NetCounterData}!NetCounterData@{NetCounterData}|hyperpage}{199} -\indexentry{NetCounterData@{NetCounterData}!indices@{indices}|hyperpage}{199} -\indexentry{indices@{indices}!NetCounterData@{NetCounterData}|hyperpage}{199} -\indexentry{NetCounterData@{NetCounterData}!numbers@{numbers}|hyperpage}{199} -\indexentry{numbers@{numbers}!NetCounterData@{NetCounterData}|hyperpage}{199} +\indexentry{NetCounterData@{NetCounterData}!indices@{indices}|hyperpage}{200} +\indexentry{indices@{indices}!NetCounterData@{NetCounterData}|hyperpage}{200} +\indexentry{NetCounterData@{NetCounterData}!numbers@{numbers}|hyperpage}{200} +\indexentry{numbers@{numbers}!NetCounterData@{NetCounterData}|hyperpage}{200} \indexentry{NetworkData@{NetworkData}|hyperpage}{200} -\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{200} -\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{200} -\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{200} -\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{200} \indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{201} \indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{201} -\indexentry{NetworkData@{NetworkData}!````~NetworkData@{$\sim$NetworkData}|hyperpage}{201} -\indexentry{````~NetworkData@{$\sim$NetworkData}!NetworkData@{NetworkData}|hyperpage}{201} -\indexentry{NetworkData@{NetworkData}!directed@{directed}|hyperpage}{201} -\indexentry{directed@{directed}!NetworkData@{NetworkData}|hyperpage}{201} -\indexentry{NetworkData@{NetworkData}!vertex\_attr@{vertex\_attr}|hyperpage}{201} -\indexentry{vertex\_attr@{vertex\_attr}!NetworkData@{NetworkData}|hyperpage}{201} +\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{201} +\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{201} +\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{201} +\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{201} +\indexentry{NetworkData@{NetworkData}!````~NetworkData@{$\sim$NetworkData}|hyperpage}{202} +\indexentry{````~NetworkData@{$\sim$NetworkData}!NetworkData@{NetworkData}|hyperpage}{202} +\indexentry{NetworkData@{NetworkData}!directed@{directed}|hyperpage}{202} +\indexentry{directed@{directed}!NetworkData@{NetworkData}|hyperpage}{202} +\indexentry{NetworkData@{NetworkData}!vertex\_attr@{vertex\_attr}|hyperpage}{202} +\indexentry{vertex\_attr@{vertex\_attr}!NetworkData@{NetworkData}|hyperpage}{202} \indexentry{Node@{Node}|hyperpage}{202} \indexentry{Node@{Node}!Node@{Node}|hyperpage}{203} \indexentry{Node@{Node}!Node@{Node}|hyperpage}{203} -\indexentry{Node@{Node}!Node@{Node}|hyperpage}{203} -\indexentry{Node@{Node}!Node@{Node}|hyperpage}{203} +\indexentry{Node@{Node}!Node@{Node}|hyperpage}{204} +\indexentry{Node@{Node}!Node@{Node}|hyperpage}{204} \indexentry{Node@{Node}!Node@{Node}|hyperpage}{204} \indexentry{Node@{Node}!Node@{Node}|hyperpage}{204} \indexentry{Node@{Node}!Node@{Node}|hyperpage}{204} @@ -1364,8 +1368,8 @@ \indexentry{Node@{Node}!Node@{Node}|hyperpage}{204} \indexentry{Node@{Node}!````~Node@{$\sim$Node}|hyperpage}{204} \indexentry{````~Node@{$\sim$Node}!Node@{Node}|hyperpage}{204} -\indexentry{Node@{Node}!get\_parent@{get\_parent}|hyperpage}{204} -\indexentry{get\_parent@{get\_parent}!Node@{Node}|hyperpage}{204} +\indexentry{Node@{Node}!get\_parent@{get\_parent}|hyperpage}{205} +\indexentry{get\_parent@{get\_parent}!Node@{Node}|hyperpage}{205} \indexentry{Node@{Node}!is\_leaf@{is\_leaf}|hyperpage}{205} \indexentry{is\_leaf@{is\_leaf}!Node@{Node}|hyperpage}{205} \indexentry{Node@{Node}!noffspring@{noffspring}|hyperpage}{205} @@ -1374,8 +1378,8 @@ \indexentry{annotations@{annotations}!Node@{Node}|hyperpage}{205} \indexentry{Node@{Node}!array@{array}|hyperpage}{205} \indexentry{array@{array}!Node@{Node}|hyperpage}{205} -\indexentry{Node@{Node}!arrays@{arrays}|hyperpage}{205} -\indexentry{arrays@{arrays}!Node@{Node}|hyperpage}{205} +\indexentry{Node@{Node}!arrays@{arrays}|hyperpage}{206} +\indexentry{arrays@{arrays}!Node@{Node}|hyperpage}{206} \indexentry{Node@{Node}!duplication@{duplication}|hyperpage}{206} \indexentry{duplication@{duplication}!Node@{Node}|hyperpage}{206} \indexentry{Node@{Node}!id@{id}|hyperpage}{206} @@ -1384,8 +1388,8 @@ \indexentry{narray@{narray}!Node@{Node}|hyperpage}{206} \indexentry{Node@{Node}!offspring@{offspring}|hyperpage}{206} \indexentry{offspring@{offspring}!Node@{Node}|hyperpage}{206} -\indexentry{Node@{Node}!ord@{ord}|hyperpage}{206} -\indexentry{ord@{ord}!Node@{Node}|hyperpage}{206} +\indexentry{Node@{Node}!ord@{ord}|hyperpage}{207} +\indexentry{ord@{ord}!Node@{Node}|hyperpage}{207} \indexentry{Node@{Node}!parent@{parent}|hyperpage}{207} \indexentry{parent@{parent}!Node@{Node}|hyperpage}{207} \indexentry{Node@{Node}!probability@{probability}|hyperpage}{207} @@ -1397,8 +1401,8 @@ \indexentry{NodeData@{NodeData}|hyperpage}{208} \indexentry{NodeData@{NodeData}!NodeData@{NodeData}|hyperpage}{208} \indexentry{NodeData@{NodeData}!NodeData@{NodeData}|hyperpage}{208} -\indexentry{NodeData@{NodeData}!blengths@{blengths}|hyperpage}{208} -\indexentry{blengths@{blengths}!NodeData@{NodeData}|hyperpage}{208} +\indexentry{NodeData@{NodeData}!blengths@{blengths}|hyperpage}{209} +\indexentry{blengths@{blengths}!NodeData@{NodeData}|hyperpage}{209} \indexentry{NodeData@{NodeData}!duplication@{duplication}|hyperpage}{209} \indexentry{duplication@{duplication}!NodeData@{NodeData}|hyperpage}{209} \indexentry{NodeData@{NodeData}!states@{states}|hyperpage}{209} diff --git a/latex/refman.ilg b/latex/refman.ilg index d20ccee79..a5c774f4f 100644 --- a/latex/refman.ilg +++ b/latex/refman.ilg @@ -1,6 +1,6 @@ This is makeindex, version 2.15 [TeX Live 2020] (kpathsea + Thai support). -Scanning input file refman.idx......done (2221 entries accepted, 0 rejected). -Sorting entries......................done (27196 comparisons). -Generating output file refman.ind.....done (2869 lines written, 0 warnings). +Scanning input file refman.idx......done (2225 entries accepted, 0 rejected). +Sorting entries.....................done (26505 comparisons). +Generating output file refman.ind.....done (2877 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. diff --git a/latex/refman.ind b/latex/refman.ind index 7ca00330a..0cc1e3e68 100644 --- a/latex/refman.ind +++ b/latex/refman.ind @@ -53,7 +53,7 @@ \item {$\sim$NetCounterData} \subitem {NetCounterData}, \hyperpage{199} \item {$\sim$NetworkData} - \subitem {NetworkData}, \hyperpage{201} + \subitem {NetworkData}, \hyperpage{202} \item {$\sim$Node} \subitem {Node}, \hyperpage{204} \item {$\sim$PhyloRuleDynData} @@ -124,7 +124,7 @@ \subitem {Node}, \hyperpage{205} \subitem {Phylo rules}, \hyperpage{44} \item {arrays} - \subitem {Node}, \hyperpage{205} + \subitem {Node}, \hyperpage{206} \item {arrays2support} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{192} @@ -577,7 +577,7 @@ \hyperpage{217} \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{227} \item {blengths} - \subitem {NodeData}, \hyperpage{208} + \subitem {NodeData}, \hyperpage{209} \item {BOTH} \subitem {CHECK}, \hyperpage{56} \subitem {EXISTS}, \hyperpage{57} @@ -1155,7 +1155,7 @@ \item {desc\_} \subitem {counters-\/meat.hpp}, \hyperpage{284} \item {directed} - \subitem {NetworkData}, \hyperpage{201} + \subitem {NetworkData}, \hyperpage{202} \item {duplication} \subitem {Node}, \hyperpage{206} \subitem {NodeData}, \hyperpage{209} @@ -1449,7 +1449,7 @@ \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{183} \item {get\_parent} - \subitem {Node}, \hyperpage{204} + \subitem {Node}, \hyperpage{205} \item {get\_probabilities} \subitem {Geese}, \hyperpage{166} \item {get\_pset} @@ -1612,7 +1612,7 @@ \item {include/barry/support-\/meat.hpp}, \hyperpage{337} \item {include/barry/typedefs.hpp}, \hyperpage{338} \item {indices} - \subitem {NetCounterData}, \hyperpage{199} + \subitem {NetCounterData}, \hyperpage{200} \subitem {Phylo rules}, \hyperpage{44, 45} \item {inherit\_support} \subitem {Geese}, \hyperpage{167} @@ -1804,13 +1804,15 @@ \subitem {size\_unique}, \hyperpage{191} \subitem {stats\_support}, \hyperpage{196} \subitem {stats\_support\_n\_arrays}, \hyperpage{196} - \subitem {stats\_target}, \hyperpage{196} + \subitem {stats\_support\_sizes}, \hyperpage{196} + \subitem {stats\_support\_sizes\_acc}, \hyperpage{197} + \subitem {stats\_target}, \hyperpage{197} \subitem {store\_psets}, \hyperpage{191} \subitem {support\_fun}, \hyperpage{197} \subitem {support\_size}, \hyperpage{191} \subitem {transform\_model}, \hyperpage{191} \subitem {transform\_model\_fun}, \hyperpage{197} - \subitem {transform\_model\_term\_names}, \hyperpage{197} + \subitem {transform\_model\_term\_names}, \hyperpage{198} \subitem {update\_normalizing\_constants}, \hyperpage{192} \subitem {with\_pset}, \hyperpage{198} \item {model-\/meat.hpp} @@ -1855,11 +1857,11 @@ \subitem {network.hpp}, \hyperpage{299} \item {NetCounter} \subitem {network.hpp}, \hyperpage{300} - \item {NetCounterData}, \hyperpage{198} + \item {NetCounterData}, \hyperpage{199} \subitem {$\sim$NetCounterData}, \hyperpage{199} - \subitem {indices}, \hyperpage{199} + \subitem {indices}, \hyperpage{200} \subitem {NetCounterData}, \hyperpage{199} - \subitem {numbers}, \hyperpage{199} + \subitem {numbers}, \hyperpage{200} \item {NetCounters} \subitem {network.hpp}, \hyperpage{300} \item {NetModel} @@ -1963,10 +1965,10 @@ \item {NETWORK\_RULE\_LAMBDA} \subitem {network.hpp}, \hyperpage{300} \item {NetworkData}, \hyperpage{200} - \subitem {$\sim$NetworkData}, \hyperpage{201} - \subitem {directed}, \hyperpage{201} - \subitem {NetworkData}, \hyperpage{200, 201} - \subitem {vertex\_attr}, \hyperpage{201} + \subitem {$\sim$NetworkData}, \hyperpage{202} + \subitem {directed}, \hyperpage{202} + \subitem {NetworkData}, \hyperpage{201} + \subitem {vertex\_attr}, \hyperpage{202} \item {NetworkDense} \subitem {network.hpp}, \hyperpage{302} \item {NETWORKDENSE\_COUNTER\_LAMBDA} @@ -1993,22 +1995,22 @@ \subitem {$\sim$Node}, \hyperpage{204} \subitem {annotations}, \hyperpage{205} \subitem {array}, \hyperpage{205} - \subitem {arrays}, \hyperpage{205} + \subitem {arrays}, \hyperpage{206} \subitem {duplication}, \hyperpage{206} - \subitem {get\_parent}, \hyperpage{204} + \subitem {get\_parent}, \hyperpage{205} \subitem {id}, \hyperpage{206} \subitem {is\_leaf}, \hyperpage{205} \subitem {narray}, \hyperpage{206} \subitem {Node}, \hyperpage{203, 204} \subitem {noffspring}, \hyperpage{205} \subitem {offspring}, \hyperpage{206} - \subitem {ord}, \hyperpage{206} + \subitem {ord}, \hyperpage{207} \subitem {parent}, \hyperpage{207} \subitem {probability}, \hyperpage{207} \subitem {subtree\_prob}, \hyperpage{207} \subitem {visited}, \hyperpage{207} \item {NodeData}, \hyperpage{208} - \subitem {blengths}, \hyperpage{208} + \subitem {blengths}, \hyperpage{209} \subitem {duplication}, \hyperpage{209} \subitem {NodeData}, \hyperpage{208} \subitem {states}, \hyperpage{209} @@ -2045,7 +2047,7 @@ \item {num} \subitem {Phylo rules}, \hyperpage{41, 42} \item {numbers} - \subitem {NetCounterData}, \hyperpage{199} + \subitem {NetCounterData}, \hyperpage{200} \subitem {Phylo rules}, \hyperpage{45, 46} \indexspace @@ -2213,7 +2215,7 @@ \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, \hyperpage{218} \item {ord} - \subitem {Node}, \hyperpage{206} + \subitem {Node}, \hyperpage{207} \item {out\_of\_range} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{69} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -2642,9 +2644,15 @@ \item {stats\_support\_n\_arrays} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{196} - \item {stats\_target} + \item {stats\_support\_sizes} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{196} + \item {stats\_support\_sizes\_acc} + \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, + \hyperpage{197} + \item {stats\_target} + \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, + \hyperpage{197} \item {StatsCounter} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{230, 231} @@ -2774,7 +2782,7 @@ \hyperpage{197} \item {transform\_model\_term\_names} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{197} + \hyperpage{198} \item {transpose} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{72} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -2830,7 +2838,7 @@ \item {vector\_caster} \subitem {geese-\/bones.hpp}, \hyperpage{318} \item {vertex\_attr} - \subitem {NetworkData}, \hyperpage{201} + \subitem {NetworkData}, \hyperpage{202} \item {visited} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{73} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, diff --git a/latex/refman.log b/latex/refman.log index 283550056..dbd1e2668 100644 --- a/latex/refman.log +++ b/latex/refman.log @@ -1,4 +1,4 @@ -This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Alpine Linux) (preloaded format=pdflatex 2023.10.4) 4 OCT 2023 04:34 +This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Alpine Linux) (preloaded format=pdflatex 2023.10.4) 4 OCT 2023 18:13 entering extended mode restricted \write18 enabled. %&-line parsing enabled. @@ -1014,9 +1014,7 @@ LaTeX Font Info: Trying to load font information for T1+pcr on input line 17 File: t1pcr.fd 2001/06/04 font definitions for T1/pcr. ) [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] -[23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34 - -] +[23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] Package hyperref Info: Option `pageanchor' set `true' on input line 175. Chapter 1. @@ -1058,6 +1056,7 @@ s \T1/pcr/m/n/10 Network \T1/phv/m/n/10 (avail-able in the names-pace [][] [1 + ] [2]) [3] [4 ] @@ -1192,7 +1191,7 @@ hylo.pdf pdfTeX warning: pdflatex (file ./group__rules-phylo.pdf): PDF inclusion: multip le pdfs with page group included in a single page > - + File: group__rules-phylo.pdf Graphic file (type pdf) Package pdftex.def Info: group__rules-phylo.pdf used on input line 13. @@ -1235,7 +1234,7 @@ Underfull \hbox (badness 10000) detected at line 470 pdfTeX warning: pdflatex (file ./group__counters-phylo.pdf): PDF inclusion: mul tiple pdfs with page group included in a single page > - + File: group__counters-phylo.pdf Graphic file (type pdf) Package pdftex.def Info: group__counters-phylo.pdf used on input line 13. @@ -1866,7 +1865,7 @@ Package hyperref Warning: Token not allowed in a PDF string (Unicode): pdfTeX warning: pdflatex (file ./class_const_b_array_row_iter__coll__graph.pdf) : PDF inclusion: multiple pdfs with page group included in a single page > - File: class_const_b_array_row_iter__coll__graph.pdf Graphic file (type pdf) @@ -1957,7 +1956,7 @@ Underfull \hbox (badness 10000) detected at line 235 pdfTeX warning: pdflatex (file ./class_d_e_f_m__inherit__graph.pdf): PDF inclus ion: multiple pdfs with page group included in a single page > - + File: class_d_e_f_m__inherit__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_d_e_f_m__inherit__graph.pdf used on input line @@ -1968,7 +1967,7 @@ Package pdftex.def Info: class_d_e_f_m__inherit__graph.pdf used on input line pdfTeX warning: pdflatex (file ./class_d_e_f_m__coll__graph.pdf): PDF inclusion : multiple pdfs with page group included in a single page > - + File: class_d_e_f_m__coll__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_d_e_f_m__coll__graph.pdf used on input line 24. @@ -1981,7 +1980,7 @@ m_rule_data__inherit__graph.pdf pdfTeX warning: pdflatex (file ./class_d_e_f_m_rule_data__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: class_d_e_f_m_rule_data__inherit__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_d_e_f_m_rule_data__inherit__graph.pdf used on i @@ -1993,7 +1992,7 @@ rit__graph.pdf pdfTeX warning: pdflatex (file ./class_d_e_f_m_rule_dyn_data__inherit__graph.pd f): PDF inclusion: multiple pdfs with page group included in a single page > - File: class_d_e_f_m_rule_dyn_data__inherit__graph.pdf Graphic file (type pdf) @@ -2001,7 +2000,7 @@ Package pdftex.def Info: class_d_e_f_m_rule_dyn_data__inherit__graph.pdf used on input line 14. (pdftex.def) Requested size: 180.0pt x 156.00162pt. [146] <./class_d_e_f_m_rule_dyn_data__coll__graph.pdf> - + File: class_d_e_f_m_rule_dyn_data__coll__graph.pdf Graphic file (type pdf) @@ -2116,7 +2115,7 @@ Package hyperref Warning: Token not allowed in a PDF string (Unicode): pdfTeX warning: pdflatex (file ./class_model__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: class_model__coll__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_model__coll__graph.pdf used on input line 19. @@ -2146,45 +2145,46 @@ Underfull \hbox (badness 1436) in paragraph at lines 220--221 ient statis-tics for each ar-ray in the dataset. \T1/pcr/m/sl/10 array[]_[] [] -LaTeX Font Info: Font shape `T1/phv/m/n' will be -(Font) scaled to size 4.49997pt on input line 274. [178] -Underfull \hbox (badness 10000) in paragraph at lines 298--300 +LaTeX Font Info: Font shape `T1/phv/m/n' will be +(Font) scaled to size 4.49997pt on input line 278. + +Underfull \hbox (badness 10000) in paragraph at lines 302--304 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 309--311 +Underfull \hbox (badness 10000) in paragraph at lines 313--315 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 320--322 +Underfull \hbox (badness 10000) in paragraph at lines 324--326 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 320--322 +Underfull \hbox (badness 10000) in paragraph at lines 324--326 | \T1/pcr/m/n/8 const []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Da ta[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][] Dyn[]_[][]Type $\OML/cmm/m/it/8 >$ [] [179] -Underfull \hbox (badness 10000) in paragraph at lines 331--333 +Underfull \hbox (badness 10000) in paragraph at lines 335--337 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 331--333 +Underfull \hbox (badness 10000) in paragraph at lines 335--337 \T1/pcr/m/n/8 virtual []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Dat a[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]D yn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::$\OMS/cmsy/m/n/8 ^^X$[] \T1/ @@ -2192,129 +2192,129 @@ pcr/m/n/8 ( [] -Underfull \hbox (badness 10000) in paragraph at lines 345--347 +Underfull \hbox (badness 10000) in paragraph at lines 349--351 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) detected at line 359 +Underfull \hbox (badness 10000) detected at line 363 [][][] [] -Underfull \hbox (badness 10000) in paragraph at lines 370--372 +Underfull \hbox (badness 10000) in paragraph at lines 374--376 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] [180] -Underfull \hbox (badness 10000) in paragraph at lines 381--383 +Underfull \hbox (badness 10000) in paragraph at lines 385--387 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 392--394 +Underfull \hbox (badness 10000) in paragraph at lines 396--398 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 403--405 +Underfull \hbox (badness 10000) in paragraph at lines 407--409 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 414--416 +Underfull \hbox (badness 10000) in paragraph at lines 418--420 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 421--423 +Underfull \hbox (badness 10000) in paragraph at lines 425--427 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 421--423 +Underfull \hbox (badness 10000) in paragraph at lines 425--427 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add[]_[]rule[]_[]dyn [] [181] -Underfull \hbox (badness 10000) in paragraph at lines 432--434 +Underfull \hbox (badness 10000) in paragraph at lines 436--438 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 432--434 +Underfull \hbox (badness 10000) in paragraph at lines 436--438 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add[]_[]rule[]_[]dyn [] -Underfull \hbox (badness 10000) in paragraph at lines 443--445 +Underfull \hbox (badness 10000) in paragraph at lines 447--449 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 443--445 +Underfull \hbox (badness 10000) in paragraph at lines 447--449 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::string $\OM L/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 454--456 +Underfull \hbox (badness 10000) in paragraph at lines 458--460 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] [182] -Underfull \hbox (badness 10000) detected at line 474 +Underfull \hbox (badness 10000) detected at line 478 [][][] [] -Underfull \hbox (badness 10000) in paragraph at lines 485--487 +Underfull \hbox (badness 10000) in paragraph at lines 489--491 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 485--487 +Underfull \hbox (badness 10000) in paragraph at lines 489--491 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m /it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, D ata[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 496--498 +Underfull \hbox (badness 10000) in paragraph at lines 500--502 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 496--498 +Underfull \hbox (badness 10000) in paragraph at lines 500--502 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c mm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_ [][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][ @@ -2322,28 +2322,28 @@ mm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_ [] -Underfull \hbox (badness 10000) in paragraph at lines 507--509 +Underfull \hbox (badness 10000) in paragraph at lines 511--513 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 507--509 +Underfull \hbox (badness 10000) in paragraph at lines 511--513 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] Type $\OML/cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/ n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[] [] -Underfull \hbox (badness 10000) in paragraph at lines 518--520 +Underfull \hbox (badness 10000) in paragraph at lines 522--524 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 518--520 +Underfull \hbox (badness 10000) in paragraph at lines 522--524 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m /it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] @@ -2351,21 +2351,21 @@ Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] [] -Underfull \hbox (badness 10000) in paragraph at lines 529--531 +Underfull \hbox (badness 10000) in paragraph at lines 533--535 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] [183] -Underfull \hbox (badness 10000) in paragraph at lines 540--542 +Underfull \hbox (badness 10000) in paragraph at lines 544--546 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 540--542 +Underfull \hbox (badness 10000) in paragraph at lines 544--546 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type $\OML/cmm/m/it/8 >$ $>$ $\OMS/cms y/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]C @@ -2373,14 +2373,14 @@ ounter[]_[][]Type, Data[]_[][]Rule[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 551--553 +Underfull \hbox (badness 10000) in paragraph at lines 555--557 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 551--553 +Underfull \hbox (badness 10000) in paragraph at lines 555--557 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ $\OMS/cmsy/m/n/8 ^^ C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ @@ -2388,14 +2388,14 @@ C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ [] -Underfull \hbox (badness 10000) in paragraph at lines 562--564 +Underfull \hbox (badness 10000) in paragraph at lines 566--568 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 562--564 +Underfull \hbox (badness 10000) in paragraph at lines 566--568 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ $\OMS/cmsy/m/n/8 ^^ C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ @@ -2403,14 +2403,14 @@ C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ [] -Underfull \hbox (badness 10000) in paragraph at lines 577--579 +Underfull \hbox (badness 10000) in paragraph at lines 581--583 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 577--579 +Underfull \hbox (badness 10000) in paragraph at lines 581--583 \T1/pcr/m/n/8 const std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML /cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[ ]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[ @@ -2418,42 +2418,42 @@ Underfull \hbox (badness 10000) in paragraph at lines 577--579 [] [184] -Underfull \hbox (badness 10000) in paragraph at lines 588--590 +Underfull \hbox (badness 10000) in paragraph at lines 592--594 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 588--590 +Underfull \hbox (badness 10000) in paragraph at lines 592--594 \T1/pcr/m/n/8 const std[]::mt19937 $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[ ]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type [] -Underfull \hbox (badness 10000) in paragraph at lines 599--601 +Underfull \hbox (badness 10000) in paragraph at lines 603--605 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 599--601 +Underfull \hbox (badness 10000) in paragraph at lines 603--605 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Rule[]_[][]Typ e $\OML/cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 610--612 +Underfull \hbox (badness 10000) in paragraph at lines 614--616 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 610--612 +Underfull \hbox (badness 10000) in paragraph at lines 614--616 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn []_[][]Type $\OML/cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1 /pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[ @@ -2461,29 +2461,29 @@ Underfull \hbox (badness 10000) in paragraph at lines 610--612 [] -Underfull \hbox (badness 10000) in paragraph at lines 621--623 +Underfull \hbox (badness 10000) in paragraph at lines 625--627 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 621--623 -\T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML -/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ $\OMS/cmsy/m/n/8 ^^ -C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ -][]Type, Data[]_[][]Rule[]_[][]Type, +Underfull \hbox (badness 10000) in paragraph at lines 625--627 +\T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m +/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] +Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rul +e[]_[][]Dyn[] [] -Underfull \hbox (badness 10000) in paragraph at lines 632--634 +Underfull \hbox (badness 10000) in paragraph at lines 636--638 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 632--634 +Underfull \hbox (badness 10000) in paragraph at lines 636--638 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ $\OMS/cmsy/m/n/8 ^^ C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ @@ -2491,490 +2491,490 @@ C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ [] [185] -Underfull \hbox (badness 10000) in paragraph at lines 647--649 +Underfull \hbox (badness 10000) in paragraph at lines 651--653 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 647--649 +Underfull \hbox (badness 10000) in paragraph at lines 651--653 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cm m/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[] [] -Underfull \hbox (badness 10000) in paragraph at lines 658--660 +Underfull \hbox (badness 10000) in paragraph at lines 662--664 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 658--660 +Underfull \hbox (badness 10000) in paragraph at lines 662--664 \T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data []_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dy n[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::likelihood [] -Underfull \hbox (badness 10000) in paragraph at lines 669--671 +Underfull \hbox (badness 10000) in paragraph at lines 673--675 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 669--671 +Underfull \hbox (badness 10000) in paragraph at lines 673--675 \T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data []_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dy n[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::likelihood [] -Underfull \hbox (badness 10000) in paragraph at lines 680--682 +Underfull \hbox (badness 10000) in paragraph at lines 684--686 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 680--682 +Underfull \hbox (badness 10000) in paragraph at lines 684--686 \T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data []_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dy n[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::likelihood [] [186] -Underfull \hbox (badness 10000) in paragraph at lines 691--693 +Underfull \hbox (badness 10000) in paragraph at lines 695--697 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 691--693 +Underfull \hbox (badness 10000) in paragraph at lines 695--697 \T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data []_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dy n[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::likelihood [] -Underfull \hbox (badness 10000) in paragraph at lines 702--704 +Underfull \hbox (badness 10000) in paragraph at lines 706--708 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 713--715 +Underfull \hbox (badness 10000) in paragraph at lines 717--719 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 713--715 +Underfull \hbox (badness 10000) in paragraph at lines 717--719 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] []Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::nrules [] -Underfull \hbox (badness 10000) in paragraph at lines 724--726 +Underfull \hbox (badness 10000) in paragraph at lines 728--730 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 724--726 +Underfull \hbox (badness 10000) in paragraph at lines 728--730 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] []Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::nrules[]_[]dyn [] [187] -Underfull \hbox (badness 10000) in paragraph at lines 735--737 +Underfull \hbox (badness 10000) in paragraph at lines 739--741 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 735--737 +Underfull \hbox (badness 10000) in paragraph at lines 739--741 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] []Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::nterms [] -Underfull \hbox (badness 10000) in paragraph at lines 746--748 +Underfull \hbox (badness 10000) in paragraph at lines 750--752 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 746--748 +Underfull \hbox (badness 10000) in paragraph at lines 750--752 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cm m/m/it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 746--748 +Underfull \hbox (badness 10000) in paragraph at lines 750--752 | \T1/pcr/m/n/8 const []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Da ta[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][] Dyn[]_[][]Type $\OML/cmm/m/it/8 >$ [] -Underfull \hbox (badness 10000) in paragraph at lines 757--759 +Underfull \hbox (badness 10000) in paragraph at lines 761--763 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 772--774 +Underfull \hbox (badness 10000) in paragraph at lines 776--778 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 783--785 +Underfull \hbox (badness 10000) in paragraph at lines 787--789 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 783--785 +Underfull \hbox (badness 10000) in paragraph at lines 787--789 \T1/pcr/m/n/8 Array[]_[][]Type []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rul e[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::sample [] [188] -Underfull \hbox (badness 10000) in paragraph at lines 794--796 +Underfull \hbox (badness 10000) in paragraph at lines 798--800 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 794--796 +Underfull \hbox (badness 10000) in paragraph at lines 798--800 \T1/pcr/m/n/8 Array[]_[][]Type []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rul e[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::sample [] -Underfull \hbox (badness 10000) in paragraph at lines 805--807 +Underfull \hbox (badness 10000) in paragraph at lines 809--811 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 805--807 +Underfull \hbox (badness 10000) in paragraph at lines 809--811 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::set[]_[]counters [] -Underfull \hbox (badness 10000) in paragraph at lines 816--818 +Underfull \hbox (badness 10000) in paragraph at lines 820--822 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 827--829 +Underfull \hbox (badness 10000) in paragraph at lines 831--833 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] [189] -Underfull \hbox (badness 10000) in paragraph at lines 838--840 +Underfull \hbox (badness 10000) in paragraph at lines 842--844 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 838--840 +Underfull \hbox (badness 10000) in paragraph at lines 842--844 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::set[]_[]rules[]_[]dyn [] -Underfull \hbox (badness 10000) in paragraph at lines 849--851 +Underfull \hbox (badness 10000) in paragraph at lines 853--855 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 860--862 +Underfull \hbox (badness 10000) in paragraph at lines 864--866 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] [190] -Underfull \hbox (badness 10000) in paragraph at lines 888--890 +Underfull \hbox (badness 10000) in paragraph at lines 892--894 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Overfull \hbox (17.7145pt too wide) in paragraph at lines 888--890 +Overfull \hbox (17.7145pt too wide) in paragraph at lines 892--894 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] []Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::size [inline], [] -Underfull \hbox (badness 10000) in paragraph at lines 899--901 +Underfull \hbox (badness 10000) in paragraph at lines 903--905 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 899--901 +Underfull \hbox (badness 10000) in paragraph at lines 903--905 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] []Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::size[]_[]unique [] -Underfull \hbox (badness 10000) in paragraph at lines 910--912 +Underfull \hbox (badness 10000) in paragraph at lines 914--916 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 910--912 +Underfull \hbox (badness 10000) in paragraph at lines 914--916 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::store[]_[]psets [] -Underfull \hbox (badness 10000) in paragraph at lines 921--923 +Underfull \hbox (badness 10000) in paragraph at lines 925--927 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 921--923 +Underfull \hbox (badness 10000) in paragraph at lines 925--927 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] []Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::support[]_[] [] -Underfull \hbox (badness 10000) in paragraph at lines 932--934 +Underfull \hbox (badness 10000) in paragraph at lines 936--938 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 932--934 +Underfull \hbox (badness 10000) in paragraph at lines 936--938 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/i t/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Dat a[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type [] [191] -Underfull \hbox (badness 10000) in paragraph at lines 939--941 +Underfull \hbox (badness 10000) in paragraph at lines 943--945 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 939--941 +Underfull \hbox (badness 10000) in paragraph at lines 943--945 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::update[]_[] [] -Underfull \hbox (badness 10000) in paragraph at lines 957--959 +Underfull \hbox (badness 10000) in paragraph at lines 961--963 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 957--959 +Underfull \hbox (badness 10000) in paragraph at lines 961--963 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Typ e, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 968--970 +Underfull \hbox (badness 10000) in paragraph at lines 972--974 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 968--970 +Underfull \hbox (badness 10000) in paragraph at lines 972--974 []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,Data[]_[][]Counter[]_[][]Ty pe$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[ ]_[][]Type, Data[]_[][]Rule[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 979--981 +Underfull \hbox (badness 10000) in paragraph at lines 983--985 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 979--981 +Underfull \hbox (badness 10000) in paragraph at lines 983--985 []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,Data[]_[][]Counter[]_[][]Ty pe$\OML/cmm/m/it/8 >$$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 990--992 +Underfull \hbox (badness 10000) in paragraph at lines 994--996 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 990--992 +Underfull \hbox (badness 10000) in paragraph at lines 994--996 \T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[] [] [192] -Underfull \hbox (badness 10000) in paragraph at lines 1001--1003 +Underfull \hbox (badness 10000) in paragraph at lines 1005--1007 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1001--1003 +Underfull \hbox (badness 10000) in paragraph at lines 1005--1007 \T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[] [] -Underfull \hbox (badness 10000) in paragraph at lines 1012--1014 +Underfull \hbox (badness 10000) in paragraph at lines 1016--1018 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1012--1014 +Underfull \hbox (badness 10000) in paragraph at lines 1016--1018 \T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[]rules [] -Underfull \hbox (badness 10000) in paragraph at lines 1023--1025 +Underfull \hbox (badness 10000) in paragraph at lines 1027--1029 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1023--1025 +Underfull \hbox (badness 10000) in paragraph at lines 1027--1029 \T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[] [] -Underfull \hbox (badness 10000) in paragraph at lines 1034--1036 +Underfull \hbox (badness 10000) in paragraph at lines 1038--1040 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1034--1036 +Underfull \hbox (badness 10000) in paragraph at lines 1038--1040 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 bool $\OML/cmm/m/i t/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Dat a[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type [] [193] -Underfull \hbox (badness 10000) in paragraph at lines 1045--1047 +Underfull \hbox (badness 10000) in paragraph at lines 1049--1051 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1045--1047 +Underfull \hbox (badness 10000) in paragraph at lines 1049--1051 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double, size[]_[]t $\OML/cmm/m/it/8 >$ []$< $ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rul e[]_[][]Type, Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1060--1062 +Underfull \hbox (badness 10000) in paragraph at lines 1064--1066 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1060--1062 +Underfull \hbox (badness 10000) in paragraph at lines 1064--1066 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m /it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, D ata[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1071--1073 +Underfull \hbox (badness 10000) in paragraph at lines 1075--1077 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1071--1073 +Underfull \hbox (badness 10000) in paragraph at lines 1075--1077 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n/8 A rray[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 1086--1088 +Underfull \hbox (badness 10000) in paragraph at lines 1090--1092 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1086--1088 +Underfull \hbox (badness 10000) in paragraph at lines 1090--1092 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type $\OML/cmm/m/it/8 >$ $>$ []$<$ \T1 /pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[ @@ -2982,63 +2982,63 @@ Underfull \hbox (badness 10000) in paragraph at lines 1086--1088 [] -Underfull \hbox (badness 10000) in paragraph at lines 1101--1103 +Underfull \hbox (badness 10000) in paragraph at lines 1105--1107 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1101--1103 +Underfull \hbox (badness 10000) in paragraph at lines 1105--1107 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n/8 A rray[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] [194] -Underfull \hbox (badness 10000) in paragraph at lines 1116--1118 +Underfull \hbox (badness 10000) in paragraph at lines 1120--1122 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1116--1118 +Underfull \hbox (badness 10000) in paragraph at lines 1120--1122 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n/8 A rray[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 1131--1133 +Underfull \hbox (badness 10000) in paragraph at lines 1135--1137 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1131--1133 +Underfull \hbox (badness 10000) in paragraph at lines 1135--1137 \T1/pcr/m/n/8 std[]::mt19937$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]T ype, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[] [] -Underfull \hbox (badness 10000) in paragraph at lines 1142--1144 +Underfull \hbox (badness 10000) in paragraph at lines 1146--1148 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1153--1155 +Underfull \hbox (badness 10000) in paragraph at lines 1157--1159 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1153--1155 +Underfull \hbox (badness 10000) in paragraph at lines 1157--1159 []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,Data[]_[][]Rule[]_[][]Dyn[] _[][]Type$\OML/cmm/m/it/8 >$$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]T @@ -3046,116 +3046,144 @@ ype, [] [195] -Underfull \hbox (badness 10000) in paragraph at lines 1164--1166 +Underfull \hbox (badness 10000) in paragraph at lines 1168--1170 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1164--1166 -\T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML -/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n/8 - Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, +Underfull \hbox (badness 10000) in paragraph at lines 1168--1170 +\T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m +/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, D +ata[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1179--1181 +Underfull \hbox (badness 10000) in paragraph at lines 1183--1185 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1179--1181 +Underfull \hbox (badness 10000) in paragraph at lines 1183--1185 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Typ e, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1194--1196 +Underfull \hbox (badness 10000) in paragraph at lines 1198--1200 +\T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ +e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ +][]Type = bool, typename Data[]_[][] + [] + + +Underfull \hbox (badness 10000) in paragraph at lines 1198--1200 +\T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c +mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Typ +e, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] + [] + + +Underfull \hbox (badness 10000) in paragraph at lines 1213--1215 +\T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ +e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ +][]Type = bool, typename Data[]_[][] + [] + + +Underfull \hbox (badness 10000) in paragraph at lines 1213--1215 +\T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c +mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Typ +e, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] + [] + +[196] +Underfull \hbox (badness 10000) in paragraph at lines 1228--1230 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1194--1196 +Underfull \hbox (badness 10000) in paragraph at lines 1228--1230 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 1209--1211 +Underfull \hbox (badness 10000) in paragraph at lines 1243--1245 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1209--1211 +Underfull \hbox (badness 10000) in paragraph at lines 1243--1245 []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,Data[]_[][]Counter[]_[][]Ty pe,Data[]_[][]Rule[]_[][]Type,Data[]_[][]Rule[]_[][]Dyn[]_[][]Type$\OML/cmm/m/i t/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [] -[196] -Underfull \hbox (badness 10000) in paragraph at lines 1220--1222 + +Underfull \hbox (badness 10000) in paragraph at lines 1254--1256 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1220--1222 +Underfull \hbox (badness 10000) in paragraph at lines 1254--1256 \T1/pcr/m/n/8 std[]::function$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::vector$\OM L/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 double $\OM S/cmsy/m/n/8 ^^C$\T1/pcr/m/n/8 , size[]_[]t k)$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr /m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, [] - -Underfull \hbox (badness 10000) detected at line 1235 +[197] +Underfull \hbox (badness 10000) detected at line 1269 [][][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1246--1248 +Underfull \hbox (badness 10000) in paragraph at lines 1280--1282 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1246--1248 +Underfull \hbox (badness 10000) in paragraph at lines 1280--1282 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::string $\OM L/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1257--1259 +Underfull \hbox (badness 10000) in paragraph at lines 1291--1293 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1257--1259 +Underfull \hbox (badness 10000) in paragraph at lines 1291--1293 \T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] _[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ ]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::with[]_[]pset = [] -[197]) (./class_net_counter_data.tex [198]) (./class_network_data.tex [199] -[200]) (./class_node.tex [201] <./class_node__coll__graph.pdf +) (./class_net_counter_data.tex [198] [199]) (./class_network_data.tex [200] +[201]) (./class_node.tex <./class_node__coll__graph.pdf pdfTeX warning: pdflatex (file ./class_node__coll__graph.pdf): PDF inclusion: m ultiple pdfs with page group included in a single page > - + File: class_node__coll__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_node__coll__graph.pdf used on input line 19. @@ -3184,7 +3212,7 @@ Package hyperref Warning: Token not allowed in a PDF string (Unicode): pdfTeX warning: pdflatex (file ./class_power_set__coll__graph.pdf): PDF inclusi on: multiple pdfs with page group included in a single page > - + File: class_power_set__coll__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_power_set__coll__graph.pdf used on input line 1 @@ -3443,9 +3471,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 312--314 -\T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m -/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, D -ata[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[] +\T1/pcr/m/n/8 const std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML +/cmm/m/it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] +Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][] [] @@ -3713,7 +3741,7 @@ Chapter 9. pdfTeX warning: pdflatex (file ./barray-bones_8hpp__dep__incl.pdf): PDF inclusi on: multiple pdfs with page group included in a single page > - + File: barray-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barray-bones_8hpp__dep__incl.pdf used on input line 8 @@ -3725,7 +3753,7 @@ Package pdftex.def Info: barray-bones_8hpp__dep__incl.pdf used on input line 8 pdfTeX warning: pdflatex (file ./barray-meat-operators_8hpp__dep__incl.pdf): PD F inclusion: multiple pdfs with page group included in a single page > - File: barray-meat-operators_8hpp__dep__incl.pdf Graphic file (type pdf) @@ -3738,7 +3766,7 @@ l.pdf pdfTeX warning: pdflatex (file ./barray-meat_8hpp__dep__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page > - + File: barray-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barray-meat_8hpp__dep__incl.pdf used on input line 8. @@ -3746,7 +3774,7 @@ Package pdftex.def Info: barray-meat_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 193.0pt x 167.00172pt. [251] [252]) (./barraycell-bones_8hpp.tex <./barraycell-bones_8hpp__dep__incl. pdf> - + File: barraycell-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraycell-bones_8hpp__dep__incl.pdf used on input li @@ -3757,14 +3785,14 @@ ne 8. pdfTeX warning: pdflatex (file ./barraycell-meat_8hpp__dep__incl.pdf): PDF incl usion: multiple pdfs with page group included in a single page > - + File: barraycell-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraycell-meat_8hpp__dep__incl.pdf used on input lin e 8. (pdftex.def) Requested size: 196.0pt x 166.99916pt. ) (./barraydense-bones_8hpp.tex [253] <./barraydense-bones_8hpp__dep__incl.pdf> - + File: barraydense-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydense-bones_8hpp__dep__incl.pdf used on input l @@ -3776,7 +3804,7 @@ p__incl.pdf pdfTeX warning: pdflatex (file ./barraydense-meat-operators_8hpp__dep__incl.pdf ): PDF inclusion: multiple pdfs with page group included in a single page > - File: barraydense-meat-operators_8hpp__dep__incl.pdf Graphic file (type pdf) @@ -3789,7 +3817,7 @@ _incl.pdf pdfTeX warning: pdflatex (file ./barraydense-meat_8hpp__dep__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page > - + File: barraydense-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydense-meat_8hpp__dep__incl.pdf used on input li @@ -3797,7 +3825,7 @@ ne 8. (pdftex.def) Requested size: 207.0pt x 167.00684pt. [257] [258]) (./barraydensecell-bones_8hpp.tex <./barraydensecell-bones_8hpp__ dep__incl.pdf> - + File: barraydensecell-bones_8hpp__dep__incl.pdf Graphic file (type pdf) @@ -3806,7 +3834,7 @@ ut line 8. (pdftex.def) Requested size: 222.0pt x 167.00172pt. [259]) (./barraydensecell-meat_8hpp.tex <./barraydensecell-meat_8hpp__dep__inc l.pdf> - + File: barraydensecell-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydensecell-meat_8hpp__dep__incl.pdf used on inpu @@ -3817,7 +3845,7 @@ t line 8. pdfTeX warning: pdflatex (file ./barraydensecol-bones_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: barraydensecol-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydensecol-bones_8hpp__dep__incl.pdf used on inpu @@ -3825,7 +3853,7 @@ t line 8. (pdftex.def) Requested size: 220.0pt x 167.00684pt. [260] [261]) (./barraydenserow-bones_8hpp.tex <./barraydenserow-bones_8hpp__de p__incl.pdf> - + File: barraydenserow-bones_8hpp__dep__incl.pdf Graphic file (type pdf) @@ -3839,7 +3867,7 @@ t line 8. pdfTeX warning: pdflatex (file ./barry-configuration_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: barry-configuration_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barry-configuration_8hpp__dep__incl.pdf used on input @@ -3854,7 +3882,7 @@ m/it/8 >$[]\T1/pcr/m/n/8 ::max() [] ) (./barry-debug_8hpp.tex <./barry-debug_8hpp__dep__incl.pdf> - + File: barry-debug_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barry-debug_8hpp__dep__incl.pdf used on input line 8. @@ -3866,14 +3894,14 @@ Package pdftex.def Info: barry-debug_8hpp__dep__incl.pdf used on input line 8. pdfTeX warning: pdflatex (file ./barry-macros_8hpp__dep__incl.pdf): PDF inclusi on: multiple pdfs with page group included in a single page > - + File: barry-macros_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barry-macros_8hpp__dep__incl.pdf used on input line 8 . (pdftex.def) Requested size: 193.0pt x 167.00172pt. [268] [269]) (./barry_8hpp.tex <./barry_8hpp__incl.pdf> - + File: barry_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barry_8hpp__incl.pdf used on input line 56. @@ -3884,7 +3912,7 @@ Package pdftex.def Info: barry_8hpp__incl.pdf used on input line 56. pdfTeX warning: pdflatex (file ./cell-bones_8hpp__dep__incl.pdf): PDF inclusion : multiple pdfs with page group included in a single page > - + File: cell-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: cell-bones_8hpp__dep__incl.pdf used on input line 8. @@ -3894,14 +3922,14 @@ Package pdftex.def Info: cell-bones_8hpp__dep__incl.pdf used on input line 8. pdfTeX warning: pdflatex (file ./cell-meat_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: cell-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: cell-meat_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 193.0pt x 167.00172pt. ) (./col-bones_8hpp.tex [273]) (./counters-bones_8hpp.tex <./counters-bones_8hp p__dep__incl.pdf> - + File: counters-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: counters-bones_8hpp__dep__incl.pdf used on input line @@ -3912,7 +3940,7 @@ Package pdftex.def Info: counters-bones_8hpp__dep__incl.pdf used on input line pdfTeX warning: pdflatex (file ./counters-meat_8hpp__dep__incl.pdf): PDF inclus ion: multiple pdfs with page group included in a single page > - + File: counters-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: counters-meat_8hpp__dep__incl.pdf used on input line @@ -3949,7 +3977,7 @@ pe,Data[]_[][]Type$\OML/cmm/m/it/8 >$ []$<$\T1/pcr/m/n/8 Array[]_[][]Type,Data[ pdfTeX warning: pdflatex (file ./network-css_8hpp__dep__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page > - + File: network-css_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: network-css_8hpp__dep__incl.pdf used on input line 8. @@ -3961,7 +3989,7 @@ k_8hpp__incl.pdf pdfTeX warning: pdflatex (file ./network_8hpp__incl.pdf): PDF inclusion: multip le pdfs with page group included in a single page > - + File: network_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: network_8hpp__incl.pdf used on input line 9. @@ -3971,7 +3999,7 @@ Package pdftex.def Info: network_8hpp__incl.pdf used on input line 9. pdfTeX warning: pdflatex (file ./network_8hpp__dep__incl.pdf): PDF inclusion: m ultiple pdfs with page group included in a single page > - + File: network_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: network_8hpp__dep__incl.pdf used on input line 17. @@ -3982,7 +4010,7 @@ Package pdftex.def Info: network_8hpp__dep__incl.pdf used on input line 17. pdfTeX warning: pdflatex (file ./freqtable_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: freqtable_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: freqtable_8hpp__dep__incl.pdf used on input line 8. @@ -3992,14 +4020,14 @@ Package pdftex.def Info: freqtable_8hpp__dep__incl.pdf used on input line 8. pdfTeX warning: pdflatex (file ./model-bones_8hpp__dep__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page > - + File: model-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: model-bones_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 193.0pt x 167.00172pt. [302]) (./model-meat_8hpp.tex <./model-meat_8hpp__dep__incl.pdf> - + File: model-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: model-meat_8hpp__dep__incl.pdf used on input line 8. @@ -4012,14 +4040,14 @@ e $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 ¶ms, const dou-ble [] [303]) (./defm_8hpp.tex <./defm_8hpp__incl.pdf> - + File: defm_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm_8hpp__incl.pdf used on input line 14. (pdftex.def) Requested size: 350.0pt x 114.94736pt. [304]) (./defm_2counters_8hpp.tex <./defm_2counters_8hpp__incl.pdf> - + File: defm_2counters_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm_2counters_8hpp__incl.pdf used on input line 9. @@ -4029,7 +4057,7 @@ Package pdftex.def Info: defm_2counters_8hpp__incl.pdf used on input line 9. pdfTeX warning: pdflatex (file ./defm_2counters_8hpp__dep__incl.pdf): PDF inclu sion: multiple pdfs with page group included in a single page > - + File: defm_2counters_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm_2counters_8hpp__dep__incl.pdf used on input line @@ -4047,7 +4075,7 @@ cl.pdf pdfTeX warning: pdflatex (file ./geese_2counters_8hpp__dep__incl.pdf): PDF incl usion: multiple pdfs with page group included in a single page > - + File: geese_2counters_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese_2counters_8hpp__dep__incl.pdf used on input lin @@ -4145,7 +4173,7 @@ t nfunA, size[]_[]t nfunB, size[]_[] pdfTeX warning: pdflatex (file ./defm-bones_8hpp__dep__incl.pdf): PDF inclusion : multiple pdfs with page group included in a single page > - + File: defm-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm-bones_8hpp__dep__incl.pdf used on input line 8. @@ -4155,13 +4183,13 @@ Package pdftex.def Info: defm-bones_8hpp__dep__incl.pdf used on input line 8. pdfTeX warning: pdflatex (file ./defm-meat_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: defm-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm-meat_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 189.0pt x 178.00456pt. [310] [311]) (./defm-types_8hpp.tex <./defm-types_8hpp__dep__incl.pdf> - + File: defm-types_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm-types_8hpp__dep__incl.pdf used on input line 8. @@ -4179,14 +4207,14 @@ Underfull \hbox (badness 4531) in paragraph at lines 38--40 [] [312]) (./formula_8hpp.tex <./formula_8hpp__dep__incl.pdf> - + File: formula_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: formula_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 186.0pt x 245.01004pt. [313]) (./geese_8hpp.tex <./geese_8hpp__incl.pdf> - + File: geese_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese_8hpp__incl.pdf used on input line 22. @@ -4196,7 +4224,7 @@ Package pdftex.def Info: geese_8hpp__incl.pdf used on input line 22. pdfTeX warning: pdflatex (file ./flock-bones_8hpp__dep__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page > - + File: flock-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: flock-bones_8hpp__dep__incl.pdf used on input line 8. @@ -4207,13 +4235,13 @@ Package pdftex.def Info: flock-bones_8hpp__dep__incl.pdf used on input line 8. pdfTeX warning: pdflatex (file ./flock-meat_8hpp__dep__incl.pdf): PDF inclusion : multiple pdfs with page group included in a single page > - + File: flock-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: flock-meat_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 192.0pt x 177.99911pt. ) (./geese-bones_8hpp.tex [315] <./geese-bones_8hpp__dep__incl.pdf> - + File: geese-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-bones_8hpp__dep__incl.pdf used on input line 8. @@ -4226,7 +4254,7 @@ __incl.pdf pdfTeX warning: pdflatex (file ./geese-meat-constructors_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - File: geese-meat-constructors_8hpp__dep__incl.pdf Graphic file (type pdf) @@ -4238,14 +4266,14 @@ nput line 8. pdfTeX warning: pdflatex (file ./geese-meat-likelihood_8hpp__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page > - + File: geese-meat-likelihood_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-meat-likelihood_8hpp__incl.pdf used on input li ne 9. (pdftex.def) Requested size: 241.0pt x 167.00684pt. [318] <./geese-meat-likelihood_8hpp__dep__incl.pdf> - + File: geese-meat-likelihood_8hpp__dep__incl.pdf Graphic file (type pdf) @@ -4255,7 +4283,7 @@ ut line 17. [319]) (./geese-meat-likelihood__exhaust_8hpp.tex <./geese-meat-likelihood__exhaust_8h pp__dep__incl.pdf> - File: geese-meat-likelihood__exhaust_8hpp__dep__incl.pdf Graphic file (type pdf ) @@ -4268,7 +4296,7 @@ ed on input line 8. pdfTeX warning: pdflatex (file ./geese-meat-predict_8hpp__dep__incl.pdf): PDF i nclusion: multiple pdfs with page group included in a single page > - + File: geese-meat-predict_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-meat-predict_8hpp__dep__incl.pdf used on input @@ -4276,7 +4304,7 @@ line 8. 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(pdftex.def) Requested size: 212.0pt x 189.01065pt. ) (./geese-meat-simulate_8hpp.tex [321] <./geese-meat-simulate_8hpp__dep__incl. pdf> - + File: geese-meat-simulate_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-meat-simulate_8hpp__dep__incl.pdf used on input @@ -4309,13 +4337,13 @@ Package pdftex.def Info: geese-meat-simulate_8hpp__dep__incl.pdf used on input pdfTeX warning: pdflatex (file ./geese-meat_8hpp__dep__incl.pdf): PDF inclusion : multiple pdfs with page group included in a single page > - + File: geese-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-meat_8hpp__dep__incl.pdf used on input line 8. 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100644 --- a/latex/refman.toc +++ b/latex/refman.toc @@ -799,61 +799,63 @@ \contentsline {subsubsection}{\numberline {8.29.4.17}rules\_dyn}{196}{subsubsection.8.29.4.17}% \contentsline {subsubsection}{\numberline {8.29.4.18}stats\_support}{196}{subsubsection.8.29.4.18}% \contentsline {subsubsection}{\numberline {8.29.4.19}stats\_support\_n\_arrays}{196}{subsubsection.8.29.4.19}% -\contentsline {subsubsection}{\numberline {8.29.4.20}stats\_target}{197}{subsubsection.8.29.4.20}% -\contentsline {subsubsection}{\numberline {8.29.4.21}support\_fun}{197}{subsubsection.8.29.4.21}% -\contentsline {subsubsection}{\numberline {8.29.4.22}transform\_model\_fun}{197}{subsubsection.8.29.4.22}% -\contentsline {subsubsection}{\numberline {8.29.4.23}transform\_model\_term\_names}{198}{subsubsection.8.29.4.23}% -\contentsline {subsubsection}{\numberline {8.29.4.24}with\_pset}{198}{subsubsection.8.29.4.24}% -\contentsline {section}{\numberline {8.30}Net\discretionary {\mbox {\scriptsize $\DOTSB 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$}}{}{}Data Class Reference}{208}{section.8.33}% \contentsline {subsection}{\numberline {8.33.1}Detailed Description}{208}{subsection.8.33.1}% \contentsline {subsection}{\numberline {8.33.2}Constructor \& Destructor Documentation}{208}{subsection.8.33.2}% \contentsline {subsubsection}{\numberline {8.33.2.1}NodeData()}{208}{subsubsection.8.33.2.1}% -\contentsline {subsection}{\numberline {8.33.3}Member Data Documentation}{208}{subsection.8.33.3}% +\contentsline {subsection}{\numberline {8.33.3}Member Data Documentation}{209}{subsection.8.33.3}% \contentsline {subsubsection}{\numberline {8.33.3.1}blengths}{209}{subsubsection.8.33.3.1}% \contentsline {subsubsection}{\numberline {8.33.3.2}duplication}{209}{subsubsection.8.33.3.2}% \contentsline {subsubsection}{\numberline {8.33.3.3}states}{209}{subsubsection.8.33.3.3}% diff --git a/latex/rules-bones_8hpp__dep__incl.pdf b/latex/rules-bones_8hpp__dep__incl.pdf index 9f83b8af3..5120dd3dd 100644 Binary files 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ada218c08..15b760706 100644 --- a/model-bones_8hpp_source.html +++ b/model-bones_8hpp_source.html @@ -111,289 +111,293 @@
                                                                                                                                                          42  std::mt19937 * rengine = nullptr;
                                                                                                                                                          43  bool delete_rengine = false;
                                                                                                                                                          44 
                                                                                                                                                          -
                                                                                                                                                          62  std::vector< std::vector< double > > stats_support;
                                                                                                                                                          -
                                                                                                                                                          63  std::vector< size_t > stats_support_n_arrays;
                                                                                                                                                          -
                                                                                                                                                          64  std::vector< std::vector< double > > stats_target;
                                                                                                                                                          -
                                                                                                                                                          65  std::vector< size_t > arrays2support;
                                                                                                                                                          -
                                                                                                                                                          67 
                                                                                                                                                          -
                                                                                                                                                          72  MapVec_type< double, size_t > keys2support;
                                                                                                                                                          -
                                                                                                                                                          73 
                                                                                                                                                          -
                                                                                                                                                          80  bool with_pset = false;
                                                                                                                                                          -
                                                                                                                                                          81  std::vector< std::vector< Array_Type > > pset_arrays;
                                                                                                                                                          -
                                                                                                                                                          82  std::vector< std::vector<double> > pset_stats;
                                                                                                                                                          -
                                                                                                                                                          83  std::vector< std::vector<double> > pset_probs;
                                                                                                                                                          -
                                                                                                                                                          85 
                                                                                                                                                          -
                                                                                                                                                          91  Counters<Array_Type,Data_Counter_Type> * counters;
                                                                                                                                                          -
                                                                                                                                                          92  Rules<Array_Type,Data_Rule_Type> * rules;
                                                                                                                                                          -
                                                                                                                                                          93  Rules<Array_Type,Data_Rule_Dyn_Type> * rules_dyn;
                                                                                                                                                          -
                                                                                                                                                          94  Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> support_fun;
                                                                                                                                                          -
                                                                                                                                                          95  StatsCounter<Array_Type,Data_Counter_Type> counter_fun;
                                                                                                                                                          -
                                                                                                                                                          97 
                                                                                                                                                          -
                                                                                                                                                          99  std::vector< std::vector<double> > params_last;
                                                                                                                                                          -
                                                                                                                                                          100  std::vector< double > normalizing_constants;
                                                                                                                                                          -
                                                                                                                                                          101  std::vector< bool > first_calc_done;
                                                                                                                                                          -
                                                                                                                                                          102 
                                                                                                                                                          -
                                                                                                                                                          103  bool delete_counters = false;
                                                                                                                                                          -
                                                                                                                                                          104  bool delete_rules = false;
                                                                                                                                                          -
                                                                                                                                                          105  bool delete_rules_dyn = false;
                                                                                                                                                          -
                                                                                                                                                          106 
                                                                                                                                                          -
                                                                                                                                                          122  std::function<std::vector<double>(double *, size_t k)>
                                                                                                                                                          -
                                                                                                                                                          123  transform_model_fun = nullptr;
                                                                                                                                                          -
                                                                                                                                                          124 
                                                                                                                                                          -
                                                                                                                                                          125  std::vector< std::string > transform_model_term_names;
                                                                                                                                                          -
                                                                                                                                                          126 
                                                                                                                                                          -
                                                                                                                                                          127 public:
                                                                                                                                                          -
                                                                                                                                                          128 
                                                                                                                                                          -
                                                                                                                                                          135  void update_normalizing_constants(
                                                                                                                                                          -
                                                                                                                                                          136  const std::vector< double > & params,
                                                                                                                                                          -
                                                                                                                                                          137  BARRY_NCORES_ARG(=1)
                                                                                                                                                          -
                                                                                                                                                          138  );
                                                                                                                                                          -
                                                                                                                                                          139 
                                                                                                                                                          -
                                                                                                                                                          140  void set_rengine(std::mt19937 * rengine_, bool delete_ = false) {
                                                                                                                                                          -
                                                                                                                                                          141 
                                                                                                                                                          -
                                                                                                                                                          142  if (delete_rengine)
                                                                                                                                                          -
                                                                                                                                                          143  delete rengine;
                                                                                                                                                          -
                                                                                                                                                          144 
                                                                                                                                                          -
                                                                                                                                                          145  rengine = rengine_;
                                                                                                                                                          -
                                                                                                                                                          146  delete_rengine = delete_;
                                                                                                                                                          -
                                                                                                                                                          147 
                                                                                                                                                          -
                                                                                                                                                          148  };
                                                                                                                                                          -
                                                                                                                                                          149 
                                                                                                                                                          -
                                                                                                                                                          150  void set_seed(size_t s) {
                                                                                                                                                          +
                                                                                                                                                          62  std::vector< double > stats_support;
                                                                                                                                                          +
                                                                                                                                                          63  std::vector< size_t > stats_support_sizes;
                                                                                                                                                          +
                                                                                                                                                          64  std::vector< size_t > stats_support_sizes_acc;
                                                                                                                                                          +
                                                                                                                                                          65  std::vector< size_t > stats_support_n_arrays;
                                                                                                                                                          +
                                                                                                                                                          66  std::vector< std::vector< double > > stats_target;
                                                                                                                                                          +
                                                                                                                                                          67  std::vector< size_t > arrays2support;
                                                                                                                                                          +
                                                                                                                                                          69 
                                                                                                                                                          +
                                                                                                                                                          74  MapVec_type< double, size_t > keys2support;
                                                                                                                                                          +
                                                                                                                                                          75 
                                                                                                                                                          +
                                                                                                                                                          82  bool with_pset = false;
                                                                                                                                                          +
                                                                                                                                                          83  std::vector< std::vector< Array_Type > > pset_arrays;
                                                                                                                                                          +
                                                                                                                                                          84  std::vector< std::vector<double> > pset_stats;
                                                                                                                                                          +
                                                                                                                                                          85  std::vector< std::vector<double> > pset_probs;
                                                                                                                                                          +
                                                                                                                                                          87 
                                                                                                                                                          +
                                                                                                                                                          93  Counters<Array_Type,Data_Counter_Type> * counters;
                                                                                                                                                          +
                                                                                                                                                          94  Rules<Array_Type,Data_Rule_Type> * rules;
                                                                                                                                                          +
                                                                                                                                                          95  Rules<Array_Type,Data_Rule_Dyn_Type> * rules_dyn;
                                                                                                                                                          +
                                                                                                                                                          96  Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> support_fun;
                                                                                                                                                          +
                                                                                                                                                          97  StatsCounter<Array_Type,Data_Counter_Type> counter_fun;
                                                                                                                                                          +
                                                                                                                                                          99 
                                                                                                                                                          +
                                                                                                                                                          101  std::vector< std::vector<double> > params_last;
                                                                                                                                                          +
                                                                                                                                                          102  std::vector< double > normalizing_constants;
                                                                                                                                                          +
                                                                                                                                                          103  std::vector< bool > first_calc_done;
                                                                                                                                                          +
                                                                                                                                                          104 
                                                                                                                                                          +
                                                                                                                                                          105  bool delete_counters = false;
                                                                                                                                                          +
                                                                                                                                                          106  bool delete_rules = false;
                                                                                                                                                          +
                                                                                                                                                          107  bool delete_rules_dyn = false;
                                                                                                                                                          +
                                                                                                                                                          108 
                                                                                                                                                          +
                                                                                                                                                          124  std::function<std::vector<double>(double *, size_t k)>
                                                                                                                                                          +
                                                                                                                                                          125  transform_model_fun = nullptr;
                                                                                                                                                          +
                                                                                                                                                          126 
                                                                                                                                                          +
                                                                                                                                                          127  std::vector< std::string > transform_model_term_names;
                                                                                                                                                          +
                                                                                                                                                          128 
                                                                                                                                                          +
                                                                                                                                                          129 public:
                                                                                                                                                          +
                                                                                                                                                          130 
                                                                                                                                                          +
                                                                                                                                                          137  void update_normalizing_constants(
                                                                                                                                                          +
                                                                                                                                                          138  const std::vector< double > & params,
                                                                                                                                                          +
                                                                                                                                                          139  BARRY_NCORES_ARG(=1)
                                                                                                                                                          +
                                                                                                                                                          140  );
                                                                                                                                                          +
                                                                                                                                                          141 
                                                                                                                                                          +
                                                                                                                                                          142  void set_rengine(std::mt19937 * rengine_, bool delete_ = false) {
                                                                                                                                                          +
                                                                                                                                                          143 
                                                                                                                                                          +
                                                                                                                                                          144  if (delete_rengine)
                                                                                                                                                          +
                                                                                                                                                          145  delete rengine;
                                                                                                                                                          +
                                                                                                                                                          146 
                                                                                                                                                          +
                                                                                                                                                          147  rengine = rengine_;
                                                                                                                                                          +
                                                                                                                                                          148  delete_rengine = delete_;
                                                                                                                                                          +
                                                                                                                                                          149 
                                                                                                                                                          +
                                                                                                                                                          150  };
                                                                                                                                                          151 
                                                                                                                                                          -
                                                                                                                                                          152  if (rengine == nullptr)
                                                                                                                                                          -
                                                                                                                                                          153  {
                                                                                                                                                          -
                                                                                                                                                          154  rengine = new std::mt19937;
                                                                                                                                                          -
                                                                                                                                                          155  delete_rengine = true;
                                                                                                                                                          -
                                                                                                                                                          156  }
                                                                                                                                                          -
                                                                                                                                                          157 
                                                                                                                                                          -
                                                                                                                                                          158  rengine->seed(s);
                                                                                                                                                          +
                                                                                                                                                          152  void set_seed(size_t s) {
                                                                                                                                                          +
                                                                                                                                                          153 
                                                                                                                                                          +
                                                                                                                                                          154  if (rengine == nullptr)
                                                                                                                                                          +
                                                                                                                                                          155  {
                                                                                                                                                          +
                                                                                                                                                          156  rengine = new std::mt19937;
                                                                                                                                                          +
                                                                                                                                                          157  delete_rengine = true;
                                                                                                                                                          +
                                                                                                                                                          158  }
                                                                                                                                                          159 
                                                                                                                                                          -
                                                                                                                                                          160  };
                                                                                                                                                          -
                                                                                                                                                          162 
                                                                                                                                                          -
                                                                                                                                                          163  Model();
                                                                                                                                                          -
                                                                                                                                                          164  Model(size_t size_);
                                                                                                                                                          -
                                                                                                                                                          165  Model(const Model<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> & Model_);
                                                                                                                                                          -
                                                                                                                                                          166  Model<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> & operator=(
                                                                                                                                                          -
                                                                                                                                                          167  const Model<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> & Model_
                                                                                                                                                          -
                                                                                                                                                          168  );
                                                                                                                                                          -
                                                                                                                                                          169 
                                                                                                                                                          -
                                                                                                                                                          170  virtual ~Model() {
                                                                                                                                                          -
                                                                                                                                                          171  if (delete_counters)
                                                                                                                                                          -
                                                                                                                                                          172  delete counters;
                                                                                                                                                          -
                                                                                                                                                          173 
                                                                                                                                                          -
                                                                                                                                                          174  if (delete_rules)
                                                                                                                                                          -
                                                                                                                                                          175  delete rules;
                                                                                                                                                          -
                                                                                                                                                          176 
                                                                                                                                                          -
                                                                                                                                                          177  if (delete_rules_dyn)
                                                                                                                                                          -
                                                                                                                                                          178  delete rules_dyn;
                                                                                                                                                          -
                                                                                                                                                          179 
                                                                                                                                                          -
                                                                                                                                                          180  if (delete_rengine)
                                                                                                                                                          -
                                                                                                                                                          181  delete rengine;
                                                                                                                                                          -
                                                                                                                                                          182  };
                                                                                                                                                          -
                                                                                                                                                          183 
                                                                                                                                                          -
                                                                                                                                                          184  void store_psets() noexcept;
                                                                                                                                                          -
                                                                                                                                                          185  std::vector< double > gen_key(const Array_Type & Array_);
                                                                                                                                                          -
                                                                                                                                                          186 
                                                                                                                                                          -
                                                                                                                                                          193  void add_counter(Counter<Array_Type, Data_Counter_Type> & counter);
                                                                                                                                                          -
                                                                                                                                                          194  void add_counter(
                                                                                                                                                          -
                                                                                                                                                          195  Counter_fun_type<Array_Type,Data_Counter_Type> count_fun_,
                                                                                                                                                          -
                                                                                                                                                          196  Counter_fun_type<Array_Type,Data_Counter_Type> init_fun_ = nullptr,
                                                                                                                                                          -
                                                                                                                                                          197  Data_Counter_Type data_ = nullptr
                                                                                                                                                          -
                                                                                                                                                          198  );
                                                                                                                                                          -
                                                                                                                                                          199  void set_counters(Counters<Array_Type,Data_Counter_Type> * counters_);
                                                                                                                                                          -
                                                                                                                                                          200  void add_hasher(Hasher_fun_type<Array_Type,Data_Counter_Type> fun_);
                                                                                                                                                          -
                                                                                                                                                          202 
                                                                                                                                                          -
                                                                                                                                                          209  void add_rule(Rule<Array_Type, Data_Rule_Type> & rule);
                                                                                                                                                          -
                                                                                                                                                          210  void add_rule(
                                                                                                                                                          -
                                                                                                                                                          211  Rule_fun_type<Array_Type, Data_Rule_Type> count_fun_,
                                                                                                                                                          -
                                                                                                                                                          212  Data_Rule_Type data_
                                                                                                                                                          -
                                                                                                                                                          213  );
                                                                                                                                                          -
                                                                                                                                                          214 
                                                                                                                                                          -
                                                                                                                                                          215  void set_rules(Rules<Array_Type,Data_Rule_Type> * rules_);
                                                                                                                                                          -
                                                                                                                                                          216 
                                                                                                                                                          -
                                                                                                                                                          217  void add_rule_dyn(Rule<Array_Type, Data_Rule_Dyn_Type> & rule);
                                                                                                                                                          -
                                                                                                                                                          218  void add_rule_dyn(
                                                                                                                                                          -
                                                                                                                                                          219  Rule_fun_type<Array_Type, Data_Rule_Dyn_Type> count_fun_,
                                                                                                                                                          -
                                                                                                                                                          220  Data_Rule_Dyn_Type data_
                                                                                                                                                          -
                                                                                                                                                          221  );
                                                                                                                                                          -
                                                                                                                                                          222 
                                                                                                                                                          -
                                                                                                                                                          223  void set_rules_dyn(Rules<Array_Type,Data_Rule_Dyn_Type> * rules_);
                                                                                                                                                          -
                                                                                                                                                          225 
                                                                                                                                                          -
                                                                                                                                                          226 
                                                                                                                                                          -
                                                                                                                                                          236  size_t add_array(const Array_Type & Array_, bool force_new = false);
                                                                                                                                                          -
                                                                                                                                                          237 
                                                                                                                                                          -
                                                                                                                                                          238 
                                                                                                                                                          -
                                                                                                                                                          251  double likelihood(
                                                                                                                                                          -
                                                                                                                                                          252  const std::vector<double> & params,
                                                                                                                                                          -
                                                                                                                                                          253  const size_t & i,
                                                                                                                                                          -
                                                                                                                                                          254  bool as_log = false,
                                                                                                                                                          -
                                                                                                                                                          255  bool no_update_normconst = false
                                                                                                                                                          -
                                                                                                                                                          256  );
                                                                                                                                                          -
                                                                                                                                                          257 
                                                                                                                                                          -
                                                                                                                                                          258  double likelihood(
                                                                                                                                                          -
                                                                                                                                                          259  const std::vector<double> & params,
                                                                                                                                                          -
                                                                                                                                                          260  const Array_Type & Array_,
                                                                                                                                                          -
                                                                                                                                                          261  int i = -1,
                                                                                                                                                          -
                                                                                                                                                          262  bool as_log = false,
                                                                                                                                                          -
                                                                                                                                                          263  bool no_update_normconst = false
                                                                                                                                                          -
                                                                                                                                                          264  );
                                                                                                                                                          -
                                                                                                                                                          265 
                                                                                                                                                          -
                                                                                                                                                          266  double likelihood(
                                                                                                                                                          -
                                                                                                                                                          267  const std::vector<double> & params,
                                                                                                                                                          -
                                                                                                                                                          268  const std::vector<double> & target_,
                                                                                                                                                          -
                                                                                                                                                          269  const size_t & i,
                                                                                                                                                          -
                                                                                                                                                          270  bool as_log = false,
                                                                                                                                                          -
                                                                                                                                                          271  bool no_update_normconst = false
                                                                                                                                                          -
                                                                                                                                                          272  );
                                                                                                                                                          -
                                                                                                                                                          273 
                                                                                                                                                          -
                                                                                                                                                          274  double likelihood(
                                                                                                                                                          -
                                                                                                                                                          275  const std::vector<double> & params,
                                                                                                                                                          -
                                                                                                                                                          276  const double * target_,
                                                                                                                                                          -
                                                                                                                                                          277  const size_t & i,
                                                                                                                                                          -
                                                                                                                                                          278  bool as_log = false,
                                                                                                                                                          -
                                                                                                                                                          279  bool no_update_normconst = false
                                                                                                                                                          -
                                                                                                                                                          280  );
                                                                                                                                                          -
                                                                                                                                                          281 
                                                                                                                                                          -
                                                                                                                                                          282  double likelihood_total(
                                                                                                                                                          -
                                                                                                                                                          283  const std::vector<double> & params,
                                                                                                                                                          -
                                                                                                                                                          284  bool as_log = false,
                                                                                                                                                          -
                                                                                                                                                          285  BARRY_NCORES_ARG(=2),
                                                                                                                                                          -
                                                                                                                                                          286  bool no_update_normconst = false
                                                                                                                                                          -
                                                                                                                                                          287  );
                                                                                                                                                          -
                                                                                                                                                          289 
                                                                                                                                                          -
                                                                                                                                                          299  std::vector< double > & get_normalizing_constants();
                                                                                                                                                          -
                                                                                                                                                          300 
                                                                                                                                                          -
                                                                                                                                                          301  const std::vector< Array_Type > * get_pset(
                                                                                                                                                          -
                                                                                                                                                          302  const size_t & i
                                                                                                                                                          -
                                                                                                                                                          303  );
                                                                                                                                                          -
                                                                                                                                                          304 
                                                                                                                                                          -
                                                                                                                                                          305  const std::vector< double > * get_pset_stats(
                                                                                                                                                          -
                                                                                                                                                          306  const size_t & i
                                                                                                                                                          -
                                                                                                                                                          307  );
                                                                                                                                                          -
                                                                                                                                                          309 
                                                                                                                                                          -
                                                                                                                                                          310  void print_stats(size_t i) const;
                                                                                                                                                          -
                                                                                                                                                          311 
                                                                                                                                                          -
                                                                                                                                                          315  virtual void print() const;
                                                                                                                                                          -
                                                                                                                                                          316 
                                                                                                                                                          -
                                                                                                                                                          317  Array_Type sample(const Array_Type & Array_, const std::vector<double> & params = {});
                                                                                                                                                          -
                                                                                                                                                          318  Array_Type sample(const size_t & i, const std::vector<double> & params);
                                                                                                                                                          -
                                                                                                                                                          319 
                                                                                                                                                          -
                                                                                                                                                          333  double conditional_prob(
                                                                                                                                                          -
                                                                                                                                                          334  const Array_Type & Array_,
                                                                                                                                                          -
                                                                                                                                                          335  const std::vector< double > & params,
                                                                                                                                                          -
                                                                                                                                                          336  size_t i,
                                                                                                                                                          -
                                                                                                                                                          337  size_t j
                                                                                                                                                          -
                                                                                                                                                          338  );
                                                                                                                                                          -
                                                                                                                                                          339 
                                                                                                                                                          -
                                                                                                                                                          353  size_t size() const noexcept;
                                                                                                                                                          -
                                                                                                                                                          354  size_t size_unique() const noexcept;
                                                                                                                                                          -
                                                                                                                                                          355  size_t nterms() const noexcept;
                                                                                                                                                          -
                                                                                                                                                          356  size_t nrules() const noexcept;
                                                                                                                                                          -
                                                                                                                                                          357  size_t nrules_dyn() const noexcept;
                                                                                                                                                          -
                                                                                                                                                          358  size_t support_size() const noexcept;
                                                                                                                                                          -
                                                                                                                                                          359  std::vector< std::string > colnames() const;
                                                                                                                                                          -
                                                                                                                                                          361 
                                                                                                                                                          -
                                                                                                                                                          362  const std::mt19937 * get_rengine() const;
                                                                                                                                                          +
                                                                                                                                                          160  rengine->seed(s);
                                                                                                                                                          +
                                                                                                                                                          161 
                                                                                                                                                          +
                                                                                                                                                          162  };
                                                                                                                                                          +
                                                                                                                                                          164 
                                                                                                                                                          +
                                                                                                                                                          165  Model();
                                                                                                                                                          +
                                                                                                                                                          166  Model(size_t size_);
                                                                                                                                                          +
                                                                                                                                                          167  Model(const Model<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> & Model_);
                                                                                                                                                          +
                                                                                                                                                          168  Model<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> & operator=(
                                                                                                                                                          +
                                                                                                                                                          169  const Model<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> & Model_
                                                                                                                                                          +
                                                                                                                                                          170  );
                                                                                                                                                          +
                                                                                                                                                          171 
                                                                                                                                                          +
                                                                                                                                                          172  virtual ~Model() {
                                                                                                                                                          +
                                                                                                                                                          173  if (delete_counters)
                                                                                                                                                          +
                                                                                                                                                          174  delete counters;
                                                                                                                                                          +
                                                                                                                                                          175 
                                                                                                                                                          +
                                                                                                                                                          176  if (delete_rules)
                                                                                                                                                          +
                                                                                                                                                          177  delete rules;
                                                                                                                                                          +
                                                                                                                                                          178 
                                                                                                                                                          +
                                                                                                                                                          179  if (delete_rules_dyn)
                                                                                                                                                          +
                                                                                                                                                          180  delete rules_dyn;
                                                                                                                                                          +
                                                                                                                                                          181 
                                                                                                                                                          +
                                                                                                                                                          182  if (delete_rengine)
                                                                                                                                                          +
                                                                                                                                                          183  delete rengine;
                                                                                                                                                          +
                                                                                                                                                          184  };
                                                                                                                                                          +
                                                                                                                                                          185 
                                                                                                                                                          +
                                                                                                                                                          186  void store_psets() noexcept;
                                                                                                                                                          +
                                                                                                                                                          187  std::vector< double > gen_key(const Array_Type & Array_);
                                                                                                                                                          +
                                                                                                                                                          188 
                                                                                                                                                          +
                                                                                                                                                          195  void add_counter(Counter<Array_Type, Data_Counter_Type> & counter);
                                                                                                                                                          +
                                                                                                                                                          196  void add_counter(
                                                                                                                                                          +
                                                                                                                                                          197  Counter_fun_type<Array_Type,Data_Counter_Type> count_fun_,
                                                                                                                                                          +
                                                                                                                                                          198  Counter_fun_type<Array_Type,Data_Counter_Type> init_fun_ = nullptr,
                                                                                                                                                          +
                                                                                                                                                          199  Data_Counter_Type data_ = nullptr
                                                                                                                                                          +
                                                                                                                                                          200  );
                                                                                                                                                          +
                                                                                                                                                          201  void set_counters(Counters<Array_Type,Data_Counter_Type> * counters_);
                                                                                                                                                          +
                                                                                                                                                          202  void add_hasher(Hasher_fun_type<Array_Type,Data_Counter_Type> fun_);
                                                                                                                                                          +
                                                                                                                                                          204 
                                                                                                                                                          +
                                                                                                                                                          211  void add_rule(Rule<Array_Type, Data_Rule_Type> & rule);
                                                                                                                                                          +
                                                                                                                                                          212  void add_rule(
                                                                                                                                                          +
                                                                                                                                                          213  Rule_fun_type<Array_Type, Data_Rule_Type> count_fun_,
                                                                                                                                                          +
                                                                                                                                                          214  Data_Rule_Type data_
                                                                                                                                                          +
                                                                                                                                                          215  );
                                                                                                                                                          +
                                                                                                                                                          216 
                                                                                                                                                          +
                                                                                                                                                          217  void set_rules(Rules<Array_Type,Data_Rule_Type> * rules_);
                                                                                                                                                          +
                                                                                                                                                          218 
                                                                                                                                                          +
                                                                                                                                                          219  void add_rule_dyn(Rule<Array_Type, Data_Rule_Dyn_Type> & rule);
                                                                                                                                                          +
                                                                                                                                                          220  void add_rule_dyn(
                                                                                                                                                          +
                                                                                                                                                          221  Rule_fun_type<Array_Type, Data_Rule_Dyn_Type> count_fun_,
                                                                                                                                                          +
                                                                                                                                                          222  Data_Rule_Dyn_Type data_
                                                                                                                                                          +
                                                                                                                                                          223  );
                                                                                                                                                          +
                                                                                                                                                          224 
                                                                                                                                                          +
                                                                                                                                                          225  void set_rules_dyn(Rules<Array_Type,Data_Rule_Dyn_Type> * rules_);
                                                                                                                                                          +
                                                                                                                                                          227 
                                                                                                                                                          +
                                                                                                                                                          228 
                                                                                                                                                          +
                                                                                                                                                          238  size_t add_array(const Array_Type & Array_, bool force_new = false);
                                                                                                                                                          +
                                                                                                                                                          239 
                                                                                                                                                          +
                                                                                                                                                          240 
                                                                                                                                                          +
                                                                                                                                                          253  double likelihood(
                                                                                                                                                          +
                                                                                                                                                          254  const std::vector<double> & params,
                                                                                                                                                          +
                                                                                                                                                          255  const size_t & i,
                                                                                                                                                          +
                                                                                                                                                          256  bool as_log = false,
                                                                                                                                                          +
                                                                                                                                                          257  bool no_update_normconst = false
                                                                                                                                                          +
                                                                                                                                                          258  );
                                                                                                                                                          +
                                                                                                                                                          259 
                                                                                                                                                          +
                                                                                                                                                          260  double likelihood(
                                                                                                                                                          +
                                                                                                                                                          261  const std::vector<double> & params,
                                                                                                                                                          +
                                                                                                                                                          262  const Array_Type & Array_,
                                                                                                                                                          +
                                                                                                                                                          263  int i = -1,
                                                                                                                                                          +
                                                                                                                                                          264  bool as_log = false,
                                                                                                                                                          +
                                                                                                                                                          265  bool no_update_normconst = false
                                                                                                                                                          +
                                                                                                                                                          266  );
                                                                                                                                                          +
                                                                                                                                                          267 
                                                                                                                                                          +
                                                                                                                                                          268  double likelihood(
                                                                                                                                                          +
                                                                                                                                                          269  const std::vector<double> & params,
                                                                                                                                                          +
                                                                                                                                                          270  const std::vector<double> & target_,
                                                                                                                                                          +
                                                                                                                                                          271  const size_t & i,
                                                                                                                                                          +
                                                                                                                                                          272  bool as_log = false,
                                                                                                                                                          +
                                                                                                                                                          273  bool no_update_normconst = false
                                                                                                                                                          +
                                                                                                                                                          274  );
                                                                                                                                                          +
                                                                                                                                                          275 
                                                                                                                                                          +
                                                                                                                                                          276  double likelihood(
                                                                                                                                                          +
                                                                                                                                                          277  const std::vector<double> & params,
                                                                                                                                                          +
                                                                                                                                                          278  const double * target_,
                                                                                                                                                          +
                                                                                                                                                          279  const size_t & i,
                                                                                                                                                          +
                                                                                                                                                          280  bool as_log = false,
                                                                                                                                                          +
                                                                                                                                                          281  bool no_update_normconst = false
                                                                                                                                                          +
                                                                                                                                                          282  );
                                                                                                                                                          +
                                                                                                                                                          283 
                                                                                                                                                          +
                                                                                                                                                          284  double likelihood_total(
                                                                                                                                                          +
                                                                                                                                                          285  const std::vector<double> & params,
                                                                                                                                                          +
                                                                                                                                                          286  bool as_log = false,
                                                                                                                                                          +
                                                                                                                                                          287  BARRY_NCORES_ARG(=2),
                                                                                                                                                          +
                                                                                                                                                          288  bool no_update_normconst = false
                                                                                                                                                          +
                                                                                                                                                          289  );
                                                                                                                                                          +
                                                                                                                                                          291 
                                                                                                                                                          +
                                                                                                                                                          301  std::vector< double > & get_normalizing_constants();
                                                                                                                                                          +
                                                                                                                                                          302 
                                                                                                                                                          +
                                                                                                                                                          303  const std::vector< Array_Type > * get_pset(
                                                                                                                                                          +
                                                                                                                                                          304  const size_t & i
                                                                                                                                                          +
                                                                                                                                                          305  );
                                                                                                                                                          +
                                                                                                                                                          306 
                                                                                                                                                          +
                                                                                                                                                          307  const std::vector< double > * get_pset_stats(
                                                                                                                                                          +
                                                                                                                                                          308  const size_t & i
                                                                                                                                                          +
                                                                                                                                                          309  );
                                                                                                                                                          +
                                                                                                                                                          311 
                                                                                                                                                          +
                                                                                                                                                          312  void print_stats(size_t i) const;
                                                                                                                                                          +
                                                                                                                                                          313 
                                                                                                                                                          +
                                                                                                                                                          317  virtual void print() const;
                                                                                                                                                          +
                                                                                                                                                          318 
                                                                                                                                                          +
                                                                                                                                                          319  Array_Type sample(const Array_Type & Array_, const std::vector<double> & params = {});
                                                                                                                                                          +
                                                                                                                                                          320  Array_Type sample(const size_t & i, const std::vector<double> & params);
                                                                                                                                                          +
                                                                                                                                                          321 
                                                                                                                                                          +
                                                                                                                                                          335  double conditional_prob(
                                                                                                                                                          +
                                                                                                                                                          336  const Array_Type & Array_,
                                                                                                                                                          +
                                                                                                                                                          337  const std::vector< double > & params,
                                                                                                                                                          +
                                                                                                                                                          338  size_t i,
                                                                                                                                                          +
                                                                                                                                                          339  size_t j
                                                                                                                                                          +
                                                                                                                                                          340  );
                                                                                                                                                          +
                                                                                                                                                          341 
                                                                                                                                                          +
                                                                                                                                                          355  size_t size() const noexcept;
                                                                                                                                                          +
                                                                                                                                                          356  size_t size_unique() const noexcept;
                                                                                                                                                          +
                                                                                                                                                          357  size_t nterms() const noexcept;
                                                                                                                                                          +
                                                                                                                                                          358  size_t nrules() const noexcept;
                                                                                                                                                          +
                                                                                                                                                          359  size_t nrules_dyn() const noexcept;
                                                                                                                                                          +
                                                                                                                                                          360  size_t support_size() const noexcept;
                                                                                                                                                          +
                                                                                                                                                          361  std::vector< std::string > colnames() const;
                                                                                                                                                          363 
                                                                                                                                                          -
                                                                                                                                                          364  Counters<Array_Type,Data_Counter_Type> * get_counters();
                                                                                                                                                          -
                                                                                                                                                          365  Rules<Array_Type,Data_Rule_Type> * get_rules();
                                                                                                                                                          -
                                                                                                                                                          366  Rules<Array_Type,Data_Rule_Dyn_Type> * get_rules_dyn();
                                                                                                                                                          -
                                                                                                                                                          367  Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> * get_support_fun();
                                                                                                                                                          -
                                                                                                                                                          368 
                                                                                                                                                          -
                                                                                                                                                          380  std::vector< std::vector< double > > * get_stats_target();
                                                                                                                                                          -
                                                                                                                                                          381  std::vector< std::vector< double > > * get_stats_support();
                                                                                                                                                          -
                                                                                                                                                          382  std::vector< size_t > * get_arrays2support();
                                                                                                                                                          -
                                                                                                                                                          383  std::vector< std::vector< Array_Type > > * get_pset_arrays();
                                                                                                                                                          -
                                                                                                                                                          384  std::vector< std::vector<double> > * get_pset_stats();
                                                                                                                                                          -
                                                                                                                                                          385  std::vector< std::vector<double> > * get_pset_probs();
                                                                                                                                                          -
                                                                                                                                                          387 
                                                                                                                                                          -
                                                                                                                                                          398  void set_transform_model(
                                                                                                                                                          -
                                                                                                                                                          399  std::function<std::vector<double>(double*,size_t)> fun,
                                                                                                                                                          -
                                                                                                                                                          400  std::vector< std::string > names
                                                                                                                                                          -
                                                                                                                                                          401  );
                                                                                                                                                          -
                                                                                                                                                          402  std::vector<double> transform_model(
                                                                                                                                                          -
                                                                                                                                                          403  double * data,
                                                                                                                                                          -
                                                                                                                                                          404  size_t k
                                                                                                                                                          -
                                                                                                                                                          405  );
                                                                                                                                                          -
                                                                                                                                                          407 
                                                                                                                                                          -
                                                                                                                                                          408 };
                                                                                                                                                          +
                                                                                                                                                          364  const std::mt19937 * get_rengine() const;
                                                                                                                                                          +
                                                                                                                                                          365 
                                                                                                                                                          +
                                                                                                                                                          366  Counters<Array_Type,Data_Counter_Type> * get_counters();
                                                                                                                                                          +
                                                                                                                                                          367  Rules<Array_Type,Data_Rule_Type> * get_rules();
                                                                                                                                                          +
                                                                                                                                                          368  Rules<Array_Type,Data_Rule_Dyn_Type> * get_rules_dyn();
                                                                                                                                                          +
                                                                                                                                                          369  Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> * get_support_fun();
                                                                                                                                                          +
                                                                                                                                                          370 
                                                                                                                                                          +
                                                                                                                                                          382  std::vector< std::vector< double > > * get_stats_target();
                                                                                                                                                          +
                                                                                                                                                          383  std::vector< double > * get_stats_support();
                                                                                                                                                          +
                                                                                                                                                          384  std::vector< size_t > * get_arrays2support();
                                                                                                                                                          +
                                                                                                                                                          385  std::vector< std::vector< Array_Type > > * get_pset_arrays();
                                                                                                                                                          +
                                                                                                                                                          386  std::vector< std::vector<double> > * get_pset_stats();
                                                                                                                                                          +
                                                                                                                                                          387  std::vector< std::vector<double> > * get_pset_probs();
                                                                                                                                                          +
                                                                                                                                                          389 
                                                                                                                                                          +
                                                                                                                                                          400  void set_transform_model(
                                                                                                                                                          +
                                                                                                                                                          401  std::function<std::vector<double>(double*,size_t)> fun,
                                                                                                                                                          +
                                                                                                                                                          402  std::vector< std::string > names
                                                                                                                                                          +
                                                                                                                                                          403  );
                                                                                                                                                          +
                                                                                                                                                          404  std::vector<double> transform_model(
                                                                                                                                                          +
                                                                                                                                                          405  double * data,
                                                                                                                                                          +
                                                                                                                                                          406  size_t k
                                                                                                                                                          +
                                                                                                                                                          407  );
                                                                                                                                                          409 
                                                                                                                                                          -
                                                                                                                                                          410 
                                                                                                                                                          -
                                                                                                                                                          411 #endif
                                                                                                                                                          +
                                                                                                                                                          410 };
                                                                                                                                                          +
                                                                                                                                                          411 
                                                                                                                                                          +
                                                                                                                                                          412 
                                                                                                                                                          +
                                                                                                                                                          413 #endif
                                                                                                                                                          BARRY_NCORES_ARG
                                                                                                                                                          #define BARRY_NCORES_ARG(default)
                                                                                                                                                          Definition: barry-macros.hpp:15
                                                                                                                                                          BArray
                                                                                                                                                          Baseline class for binary arrays.
                                                                                                                                                          Definition: barray-bones.hpp:28
                                                                                                                                                          Counter
                                                                                                                                                          A counter function based on change statistics.
                                                                                                                                                          Definition: counters-bones.hpp:35
                                                                                                                                                          Counters
                                                                                                                                                          Vector of counters.
                                                                                                                                                          Definition: counters-bones.hpp:108
                                                                                                                                                          Model
                                                                                                                                                          General framework for discrete exponential models. This class allows generating discrete exponential ...
                                                                                                                                                          Definition: model-bones.hpp:34
                                                                                                                                                          -
                                                                                                                                                          Model::size_unique
                                                                                                                                                          size_t size_unique() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1084
                                                                                                                                                          -
                                                                                                                                                          Model::transform_model_term_names
                                                                                                                                                          std::vector< std::string > transform_model_term_names
                                                                                                                                                          Definition: model-bones.hpp:125
                                                                                                                                                          -
                                                                                                                                                          Model::get_rengine
                                                                                                                                                          const std::mt19937 * get_rengine() const
                                                                                                                                                          Definition: model-meat.hpp:1432
                                                                                                                                                          -
                                                                                                                                                          Model::delete_rules
                                                                                                                                                          bool delete_rules
                                                                                                                                                          Definition: model-bones.hpp:104
                                                                                                                                                          -
                                                                                                                                                          Model::rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * rules_dyn
                                                                                                                                                          Definition: model-bones.hpp:93
                                                                                                                                                          -
                                                                                                                                                          Model::rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * rules
                                                                                                                                                          Definition: model-bones.hpp:92
                                                                                                                                                          -
                                                                                                                                                          Model::counter_fun
                                                                                                                                                          StatsCounter< Array_Type, Data_Counter_Type > counter_fun
                                                                                                                                                          Definition: model-bones.hpp:95
                                                                                                                                                          -
                                                                                                                                                          Model::size
                                                                                                                                                          size_t size() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1076
                                                                                                                                                          -
                                                                                                                                                          Model::add_counter
                                                                                                                                                          void add_counter(Counter< Array_Type, Data_Counter_Type > &counter)
                                                                                                                                                          Definition: model-meat.hpp:352
                                                                                                                                                          -
                                                                                                                                                          Model::get_counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                                                                                          Definition: model-meat.hpp:1437
                                                                                                                                                          -
                                                                                                                                                          Model::stats_target
                                                                                                                                                          std::vector< std::vector< double > > stats_target
                                                                                                                                                          Target statistics of the model.
                                                                                                                                                          Definition: model-bones.hpp:64
                                                                                                                                                          -
                                                                                                                                                          Model::get_pset_probs
                                                                                                                                                          std::vector< std::vector< double > > * get_pset_probs()
                                                                                                                                                          Definition: model-meat.hpp:1491
                                                                                                                                                          -
                                                                                                                                                          Model::sample
                                                                                                                                                          Array_Type sample(const Array_Type &Array_, const std::vector< double > &params={})
                                                                                                                                                          Definition: model-meat.hpp:1230
                                                                                                                                                          +
                                                                                                                                                          Model::size_unique
                                                                                                                                                          size_t size_unique() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1143
                                                                                                                                                          +
                                                                                                                                                          Model::transform_model_term_names
                                                                                                                                                          std::vector< std::string > transform_model_term_names
                                                                                                                                                          Definition: model-bones.hpp:127
                                                                                                                                                          +
                                                                                                                                                          Model::get_rengine
                                                                                                                                                          const std::mt19937 * get_rengine() const
                                                                                                                                                          Definition: model-meat.hpp:1518
                                                                                                                                                          +
                                                                                                                                                          Model::delete_rules
                                                                                                                                                          bool delete_rules
                                                                                                                                                          Definition: model-bones.hpp:106
                                                                                                                                                          +
                                                                                                                                                          Model::rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * rules_dyn
                                                                                                                                                          Definition: model-bones.hpp:95
                                                                                                                                                          +
                                                                                                                                                          Model::rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * rules
                                                                                                                                                          Definition: model-bones.hpp:94
                                                                                                                                                          +
                                                                                                                                                          Model::counter_fun
                                                                                                                                                          StatsCounter< Array_Type, Data_Counter_Type > counter_fun
                                                                                                                                                          Definition: model-bones.hpp:97
                                                                                                                                                          +
                                                                                                                                                          Model::size
                                                                                                                                                          size_t size() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1135
                                                                                                                                                          +
                                                                                                                                                          Model::add_counter
                                                                                                                                                          void add_counter(Counter< Array_Type, Data_Counter_Type > &counter)
                                                                                                                                                          Definition: model-meat.hpp:363
                                                                                                                                                          +
                                                                                                                                                          Model::get_counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                                                                                          Definition: model-meat.hpp:1523
                                                                                                                                                          +
                                                                                                                                                          Model::stats_target
                                                                                                                                                          std::vector< std::vector< double > > stats_target
                                                                                                                                                          Target statistics of the model.
                                                                                                                                                          Definition: model-bones.hpp:66
                                                                                                                                                          +
                                                                                                                                                          Model::get_pset_probs
                                                                                                                                                          std::vector< std::vector< double > > * get_pset_probs()
                                                                                                                                                          Definition: model-meat.hpp:1577
                                                                                                                                                          +
                                                                                                                                                          Model::sample
                                                                                                                                                          Array_Type sample(const Array_Type &Array_, const std::vector< double > &params={})
                                                                                                                                                          Definition: model-meat.hpp:1290
                                                                                                                                                          Model::update_normalizing_constants
                                                                                                                                                          void update_normalizing_constants(const std::vector< double > &params,)
                                                                                                                                                          Computes the normalizing constant for a given set of parameters.
                                                                                                                                                          Definition: model-meat.hpp:134
                                                                                                                                                          -
                                                                                                                                                          Model::get_stats_support
                                                                                                                                                          std::vector< std::vector< double > > * get_stats_support()
                                                                                                                                                          Definition: model-meat.hpp:1465
                                                                                                                                                          -
                                                                                                                                                          Model::add_rule_dyn
                                                                                                                                                          void add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > &rule)
                                                                                                                                                          Definition: model-meat.hpp:435
                                                                                                                                                          -
                                                                                                                                                          Model::stats_support
                                                                                                                                                          std::vector< std::vector< double > > stats_support
                                                                                                                                                          Sufficient statistics of the model (support)
                                                                                                                                                          Definition: model-bones.hpp:62
                                                                                                                                                          -
                                                                                                                                                          Model::store_psets
                                                                                                                                                          void store_psets() noexcept
                                                                                                                                                          Definition: model-meat.hpp:337
                                                                                                                                                          -
                                                                                                                                                          Model::conditional_prob
                                                                                                                                                          double conditional_prob(const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)
                                                                                                                                                          Conditional probability ("Gibbs sampler")
                                                                                                                                                          Definition: model-meat.hpp:1399
                                                                                                                                                          -
                                                                                                                                                          Model::get_pset_stats
                                                                                                                                                          std::vector< std::vector< double > > * get_pset_stats()
                                                                                                                                                          Statistics of the support(s)
                                                                                                                                                          Definition: model-meat.hpp:1485
                                                                                                                                                          -
                                                                                                                                                          Model::operator=
                                                                                                                                                          Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & operator=(const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
                                                                                                                                                          Definition: model-meat.hpp:287
                                                                                                                                                          -
                                                                                                                                                          Model::get_stats_target
                                                                                                                                                          std::vector< std::vector< double > > * get_stats_target()
                                                                                                                                                          Raw pointers to the support and target statistics.
                                                                                                                                                          Definition: model-meat.hpp:1458
                                                                                                                                                          +
                                                                                                                                                          Model::add_rule_dyn
                                                                                                                                                          void add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > &rule)
                                                                                                                                                          Definition: model-meat.hpp:446
                                                                                                                                                          +
                                                                                                                                                          Model::stats_support
                                                                                                                                                          std::vector< double > stats_support
                                                                                                                                                          Sufficient statistics of the model (support)
                                                                                                                                                          Definition: model-bones.hpp:62
                                                                                                                                                          +
                                                                                                                                                          Model::store_psets
                                                                                                                                                          void store_psets() noexcept
                                                                                                                                                          Definition: model-meat.hpp:350
                                                                                                                                                          +
                                                                                                                                                          Model::conditional_prob
                                                                                                                                                          double conditional_prob(const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)
                                                                                                                                                          Conditional probability ("Gibbs sampler")
                                                                                                                                                          Definition: model-meat.hpp:1485
                                                                                                                                                          +
                                                                                                                                                          Model::get_pset_stats
                                                                                                                                                          std::vector< std::vector< double > > * get_pset_stats()
                                                                                                                                                          Statistics of the support(s)
                                                                                                                                                          Definition: model-meat.hpp:1571
                                                                                                                                                          +
                                                                                                                                                          Model::operator=
                                                                                                                                                          Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & operator=(const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
                                                                                                                                                          Definition: model-meat.hpp:298
                                                                                                                                                          +
                                                                                                                                                          Model::get_stats_target
                                                                                                                                                          std::vector< std::vector< double > > * get_stats_target()
                                                                                                                                                          Raw pointers to the support and target statistics.
                                                                                                                                                          Definition: model-meat.hpp:1544
                                                                                                                                                          Model::delete_rengine
                                                                                                                                                          bool delete_rengine
                                                                                                                                                          Definition: model-bones.hpp:43
                                                                                                                                                          -
                                                                                                                                                          Model::get_pset_arrays
                                                                                                                                                          std::vector< std::vector< Array_Type > > * get_pset_arrays()
                                                                                                                                                          Definition: model-meat.hpp:1479
                                                                                                                                                          -
                                                                                                                                                          Model::~Model
                                                                                                                                                          virtual ~Model()
                                                                                                                                                          Definition: model-bones.hpp:170
                                                                                                                                                          -
                                                                                                                                                          Model::get_support_fun
                                                                                                                                                          Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > * get_support_fun()
                                                                                                                                                          Definition: model-meat.hpp:1453
                                                                                                                                                          -
                                                                                                                                                          Model::gen_key
                                                                                                                                                          std::vector< double > gen_key(const Array_Type &Array_)
                                                                                                                                                          Definition: model-meat.hpp:345
                                                                                                                                                          -
                                                                                                                                                          Model::arrays2support
                                                                                                                                                          std::vector< size_t > arrays2support
                                                                                                                                                          Definition: model-bones.hpp:65
                                                                                                                                                          -
                                                                                                                                                          Model::add_array
                                                                                                                                                          size_t add_array(const Array_Type &Array_, bool force_new=false)
                                                                                                                                                          Adds an array to the support of not already included.
                                                                                                                                                          Definition: model-meat.hpp:476
                                                                                                                                                          -
                                                                                                                                                          Model::add_hasher
                                                                                                                                                          void add_hasher(Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)
                                                                                                                                                          Definition: model-meat.hpp:396
                                                                                                                                                          -
                                                                                                                                                          Model::colnames
                                                                                                                                                          std::vector< std::string > colnames() const
                                                                                                                                                          Definition: model-meat.hpp:1133
                                                                                                                                                          -
                                                                                                                                                          Model::likelihood
                                                                                                                                                          double likelihood(const std::vector< double > &params, const size_t &i, bool as_log=false, bool no_update_normconst=false)
                                                                                                                                                          Definition: model-meat.hpp:612
                                                                                                                                                          -
                                                                                                                                                          Model::set_rules
                                                                                                                                                          void set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)
                                                                                                                                                          Definition: model-meat.hpp:417
                                                                                                                                                          -
                                                                                                                                                          Model::pset_stats
                                                                                                                                                          std::vector< std::vector< double > > pset_stats
                                                                                                                                                          Statistics of the support(s)
                                                                                                                                                          Definition: model-bones.hpp:82
                                                                                                                                                          -
                                                                                                                                                          Model::nrules
                                                                                                                                                          size_t nrules() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1104
                                                                                                                                                          -
                                                                                                                                                          Model::stats_support_n_arrays
                                                                                                                                                          std::vector< size_t > stats_support_n_arrays
                                                                                                                                                          Number of arrays included per support.
                                                                                                                                                          Definition: model-bones.hpp:63
                                                                                                                                                          -
                                                                                                                                                          Model::print_stats
                                                                                                                                                          void print_stats(size_t i) const
                                                                                                                                                          Definition: model-meat.hpp:985
                                                                                                                                                          -
                                                                                                                                                          Model::nterms
                                                                                                                                                          size_t nterms() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1093
                                                                                                                                                          -
                                                                                                                                                          Model::likelihood_total
                                                                                                                                                          double likelihood_total(const std::vector< double > &params, bool as_log=false, BARRY_NCORES_ARG(=2), bool no_update_normconst=false)
                                                                                                                                                          Definition: model-meat.hpp:873
                                                                                                                                                          -
                                                                                                                                                          Model::with_pset
                                                                                                                                                          bool with_pset
                                                                                                                                                          Definition: model-bones.hpp:80
                                                                                                                                                          -
                                                                                                                                                          Model::get_rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                                                                                          Definition: model-meat.hpp:1442
                                                                                                                                                          -
                                                                                                                                                          Model::delete_rules_dyn
                                                                                                                                                          bool delete_rules_dyn
                                                                                                                                                          Definition: model-bones.hpp:105
                                                                                                                                                          -
                                                                                                                                                          Model::delete_counters
                                                                                                                                                          bool delete_counters
                                                                                                                                                          Definition: model-bones.hpp:103
                                                                                                                                                          -
                                                                                                                                                          Model::set_counters
                                                                                                                                                          void set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)
                                                                                                                                                          Definition: model-meat.hpp:378
                                                                                                                                                          -
                                                                                                                                                          Model::support_size
                                                                                                                                                          size_t support_size() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1120
                                                                                                                                                          -
                                                                                                                                                          Model::nrules_dyn
                                                                                                                                                          size_t nrules_dyn() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1112
                                                                                                                                                          -
                                                                                                                                                          Model::params_last
                                                                                                                                                          std::vector< std::vector< double > > params_last
                                                                                                                                                          Vector of the previously used parameters.
                                                                                                                                                          Definition: model-bones.hpp:99
                                                                                                                                                          -
                                                                                                                                                          Model::print
                                                                                                                                                          virtual void print() const
                                                                                                                                                          Prints information about the model.
                                                                                                                                                          Definition: model-meat.hpp:1015
                                                                                                                                                          +
                                                                                                                                                          Model::get_pset_arrays
                                                                                                                                                          std::vector< std::vector< Array_Type > > * get_pset_arrays()
                                                                                                                                                          Definition: model-meat.hpp:1565
                                                                                                                                                          +
                                                                                                                                                          Model::~Model
                                                                                                                                                          virtual ~Model()
                                                                                                                                                          Definition: model-bones.hpp:172
                                                                                                                                                          +
                                                                                                                                                          Model::get_support_fun
                                                                                                                                                          Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > * get_support_fun()
                                                                                                                                                          Definition: model-meat.hpp:1539
                                                                                                                                                          +
                                                                                                                                                          Model::gen_key
                                                                                                                                                          std::vector< double > gen_key(const Array_Type &Array_)
                                                                                                                                                          Definition: model-meat.hpp:356
                                                                                                                                                          +
                                                                                                                                                          Model::arrays2support
                                                                                                                                                          std::vector< size_t > arrays2support
                                                                                                                                                          Definition: model-bones.hpp:67
                                                                                                                                                          +
                                                                                                                                                          Model::add_array
                                                                                                                                                          size_t add_array(const Array_Type &Array_, bool force_new=false)
                                                                                                                                                          Adds an array to the support of not already included.
                                                                                                                                                          Definition: model-meat.hpp:488
                                                                                                                                                          +
                                                                                                                                                          Model::add_hasher
                                                                                                                                                          void add_hasher(Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)
                                                                                                                                                          Definition: model-meat.hpp:407
                                                                                                                                                          +
                                                                                                                                                          Model::colnames
                                                                                                                                                          std::vector< std::string > colnames() const
                                                                                                                                                          Definition: model-meat.hpp:1193
                                                                                                                                                          +
                                                                                                                                                          Model::likelihood
                                                                                                                                                          double likelihood(const std::vector< double > &params, const size_t &i, bool as_log=false, bool no_update_normconst=false)
                                                                                                                                                          Definition: model-meat.hpp:650
                                                                                                                                                          +
                                                                                                                                                          Model::stats_support_sizes_acc
                                                                                                                                                          std::vector< size_t > stats_support_sizes_acc
                                                                                                                                                          Accumulated number of vectors included in the support.
                                                                                                                                                          Definition: model-bones.hpp:64
                                                                                                                                                          +
                                                                                                                                                          Model::get_stats_support
                                                                                                                                                          std::vector< double > * get_stats_support()
                                                                                                                                                          Definition: model-meat.hpp:1551
                                                                                                                                                          +
                                                                                                                                                          Model::set_rules
                                                                                                                                                          void set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)
                                                                                                                                                          Definition: model-meat.hpp:428
                                                                                                                                                          +
                                                                                                                                                          Model::pset_stats
                                                                                                                                                          std::vector< std::vector< double > > pset_stats
                                                                                                                                                          Statistics of the support(s)
                                                                                                                                                          Definition: model-bones.hpp:84
                                                                                                                                                          +
                                                                                                                                                          Model::nrules
                                                                                                                                                          size_t nrules() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1163
                                                                                                                                                          +
                                                                                                                                                          Model::stats_support_n_arrays
                                                                                                                                                          std::vector< size_t > stats_support_n_arrays
                                                                                                                                                          Number of arrays included per support.
                                                                                                                                                          Definition: model-bones.hpp:65
                                                                                                                                                          +
                                                                                                                                                          Model::print_stats
                                                                                                                                                          void print_stats(size_t i) const
                                                                                                                                                          Definition: model-meat.hpp:1034
                                                                                                                                                          +
                                                                                                                                                          Model::nterms
                                                                                                                                                          size_t nterms() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1152
                                                                                                                                                          +
                                                                                                                                                          Model::likelihood_total
                                                                                                                                                          double likelihood_total(const std::vector< double > &params, bool as_log=false, BARRY_NCORES_ARG(=2), bool no_update_normconst=false)
                                                                                                                                                          Definition: model-meat.hpp:919
                                                                                                                                                          +
                                                                                                                                                          Model::with_pset
                                                                                                                                                          bool with_pset
                                                                                                                                                          Definition: model-bones.hpp:82
                                                                                                                                                          +
                                                                                                                                                          Model::get_rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                                                                                          Definition: model-meat.hpp:1528
                                                                                                                                                          +
                                                                                                                                                          Model::delete_rules_dyn
                                                                                                                                                          bool delete_rules_dyn
                                                                                                                                                          Definition: model-bones.hpp:107
                                                                                                                                                          +
                                                                                                                                                          Model::delete_counters
                                                                                                                                                          bool delete_counters
                                                                                                                                                          Definition: model-bones.hpp:105
                                                                                                                                                          +
                                                                                                                                                          Model::set_counters
                                                                                                                                                          void set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)
                                                                                                                                                          Definition: model-meat.hpp:389
                                                                                                                                                          +
                                                                                                                                                          Model::support_size
                                                                                                                                                          size_t support_size() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1179
                                                                                                                                                          +
                                                                                                                                                          Model::nrules_dyn
                                                                                                                                                          size_t nrules_dyn() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1171
                                                                                                                                                          +
                                                                                                                                                          Model::params_last
                                                                                                                                                          std::vector< std::vector< double > > params_last
                                                                                                                                                          Vector of the previously used parameters.
                                                                                                                                                          Definition: model-bones.hpp:101
                                                                                                                                                          +
                                                                                                                                                          Model::print
                                                                                                                                                          virtual void print() const
                                                                                                                                                          Prints information about the model.
                                                                                                                                                          Definition: model-meat.hpp:1074
                                                                                                                                                          Model::transform_model
                                                                                                                                                          std::vector< double > transform_model(double *data, size_t k)
                                                                                                                                                          Model::rengine
                                                                                                                                                          std::mt19937 * rengine
                                                                                                                                                          Definition: model-bones.hpp:42
                                                                                                                                                          -
                                                                                                                                                          Model::support_fun
                                                                                                                                                          Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > support_fun
                                                                                                                                                          Definition: model-bones.hpp:94
                                                                                                                                                          -
                                                                                                                                                          Model::set_rules_dyn
                                                                                                                                                          void set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
                                                                                                                                                          Definition: model-meat.hpp:459
                                                                                                                                                          -
                                                                                                                                                          Model::pset_arrays
                                                                                                                                                          std::vector< std::vector< Array_Type > > pset_arrays
                                                                                                                                                          Arrays of the support(s)
                                                                                                                                                          Definition: model-bones.hpp:81
                                                                                                                                                          -
                                                                                                                                                          Model::transform_model_fun
                                                                                                                                                          std::function< std::vector< double >double *, size_t k)> transform_model_fun
                                                                                                                                                          Transformation of the model.
                                                                                                                                                          Definition: model-bones.hpp:123
                                                                                                                                                          -
                                                                                                                                                          Model::get_arrays2support
                                                                                                                                                          std::vector< size_t > * get_arrays2support()
                                                                                                                                                          Definition: model-meat.hpp:1472
                                                                                                                                                          -
                                                                                                                                                          Model::keys2support
                                                                                                                                                          MapVec_type< double, size_t > keys2support
                                                                                                                                                          Map of types of arrays to support sets.
                                                                                                                                                          Definition: model-bones.hpp:72
                                                                                                                                                          -
                                                                                                                                                          Model::get_normalizing_constants
                                                                                                                                                          std::vector< double > & get_normalizing_constants()
                                                                                                                                                          Definition: model-meat.hpp:951
                                                                                                                                                          - -
                                                                                                                                                          Model::normalizing_constants
                                                                                                                                                          std::vector< double > normalizing_constants
                                                                                                                                                          Definition: model-bones.hpp:100
                                                                                                                                                          -
                                                                                                                                                          Model::first_calc_done
                                                                                                                                                          std::vector< bool > first_calc_done
                                                                                                                                                          Definition: model-bones.hpp:101
                                                                                                                                                          -
                                                                                                                                                          Model::set_transform_model
                                                                                                                                                          void set_transform_model(std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)
                                                                                                                                                          Set the transform_model_fun object.
                                                                                                                                                          Definition: model-meat.hpp:1497
                                                                                                                                                          -
                                                                                                                                                          Model::counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * counters
                                                                                                                                                          Definition: model-bones.hpp:91
                                                                                                                                                          -
                                                                                                                                                          Model::get_pset
                                                                                                                                                          const std::vector< Array_Type > * get_pset(const size_t &i)
                                                                                                                                                          Definition: model-meat.hpp:959
                                                                                                                                                          -
                                                                                                                                                          Model::pset_probs
                                                                                                                                                          std::vector< std::vector< double > > pset_probs
                                                                                                                                                          Probabilities of the support(s)
                                                                                                                                                          Definition: model-bones.hpp:83
                                                                                                                                                          -
                                                                                                                                                          Model::set_rengine
                                                                                                                                                          void set_rengine(std::mt19937 *rengine_, bool delete_=false)
                                                                                                                                                          Definition: model-bones.hpp:140
                                                                                                                                                          -
                                                                                                                                                          Model::add_rule
                                                                                                                                                          void add_rule(Rule< Array_Type, Data_Rule_Type > &rule)
                                                                                                                                                          Definition: model-meat.hpp:407
                                                                                                                                                          -
                                                                                                                                                          Model::set_seed
                                                                                                                                                          void set_seed(size_t s)
                                                                                                                                                          Definition: model-bones.hpp:150
                                                                                                                                                          -
                                                                                                                                                          Model::get_rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                                                                                          Definition: model-meat.hpp:1447
                                                                                                                                                          +
                                                                                                                                                          Model::support_fun
                                                                                                                                                          Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > support_fun
                                                                                                                                                          Definition: model-bones.hpp:96
                                                                                                                                                          +
                                                                                                                                                          Model::set_rules_dyn
                                                                                                                                                          void set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
                                                                                                                                                          Definition: model-meat.hpp:470
                                                                                                                                                          +
                                                                                                                                                          Model::pset_arrays
                                                                                                                                                          std::vector< std::vector< Array_Type > > pset_arrays
                                                                                                                                                          Arrays of the support(s)
                                                                                                                                                          Definition: model-bones.hpp:83
                                                                                                                                                          +
                                                                                                                                                          Model::transform_model_fun
                                                                                                                                                          std::function< std::vector< double >double *, size_t k)> transform_model_fun
                                                                                                                                                          Transformation of the model.
                                                                                                                                                          Definition: model-bones.hpp:125
                                                                                                                                                          +
                                                                                                                                                          Model::get_arrays2support
                                                                                                                                                          std::vector< size_t > * get_arrays2support()
                                                                                                                                                          Definition: model-meat.hpp:1558
                                                                                                                                                          +
                                                                                                                                                          Model::keys2support
                                                                                                                                                          MapVec_type< double, size_t > keys2support
                                                                                                                                                          Map of types of arrays to support sets.
                                                                                                                                                          Definition: model-bones.hpp:74
                                                                                                                                                          +
                                                                                                                                                          Model::stats_support_sizes
                                                                                                                                                          std::vector< size_t > stats_support_sizes
                                                                                                                                                          Number of vectors included in the support.
                                                                                                                                                          Definition: model-bones.hpp:63
                                                                                                                                                          +
                                                                                                                                                          Model::get_normalizing_constants
                                                                                                                                                          std::vector< double > & get_normalizing_constants()
                                                                                                                                                          Definition: model-meat.hpp:1000
                                                                                                                                                          + +
                                                                                                                                                          Model::normalizing_constants
                                                                                                                                                          std::vector< double > normalizing_constants
                                                                                                                                                          Definition: model-bones.hpp:102
                                                                                                                                                          +
                                                                                                                                                          Model::first_calc_done
                                                                                                                                                          std::vector< bool > first_calc_done
                                                                                                                                                          Definition: model-bones.hpp:103
                                                                                                                                                          +
                                                                                                                                                          Model::set_transform_model
                                                                                                                                                          void set_transform_model(std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)
                                                                                                                                                          Set the transform_model_fun object.
                                                                                                                                                          Definition: model-meat.hpp:1583
                                                                                                                                                          +
                                                                                                                                                          Model::counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * counters
                                                                                                                                                          Definition: model-bones.hpp:93
                                                                                                                                                          +
                                                                                                                                                          Model::get_pset
                                                                                                                                                          const std::vector< Array_Type > * get_pset(const size_t &i)
                                                                                                                                                          Definition: model-meat.hpp:1008
                                                                                                                                                          +
                                                                                                                                                          Model::pset_probs
                                                                                                                                                          std::vector< std::vector< double > > pset_probs
                                                                                                                                                          Probabilities of the support(s)
                                                                                                                                                          Definition: model-bones.hpp:85
                                                                                                                                                          +
                                                                                                                                                          Model::set_rengine
                                                                                                                                                          void set_rengine(std::mt19937 *rengine_, bool delete_=false)
                                                                                                                                                          Definition: model-bones.hpp:142
                                                                                                                                                          +
                                                                                                                                                          Model::add_rule
                                                                                                                                                          void add_rule(Rule< Array_Type, Data_Rule_Type > &rule)
                                                                                                                                                          Definition: model-meat.hpp:418
                                                                                                                                                          +
                                                                                                                                                          Model::set_seed
                                                                                                                                                          void set_seed(size_t s)
                                                                                                                                                          Definition: model-bones.hpp:152
                                                                                                                                                          +
                                                                                                                                                          Model::get_rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                                                                                          Definition: model-meat.hpp:1533
                                                                                                                                                          Rule
                                                                                                                                                          Rule for determining if a cell should be included in a sequence.
                                                                                                                                                          Definition: rules-bones.hpp:20
                                                                                                                                                          Rules
                                                                                                                                                          Vector of objects of class Rule.
                                                                                                                                                          Definition: rules-bones.hpp:71
                                                                                                                                                          StatsCounter
                                                                                                                                                          Count stats for a single Array.
                                                                                                                                                          Definition: statscounter-bones.hpp:14
                                                                                                                                                          @@ -419,7 +423,7 @@ diff --git a/model-meat_8hpp.html b/model-meat_8hpp.html index 84221e695..5912bd5b3 100644 --- a/model-meat_8hpp.html +++ b/model-meat_8hpp.html @@ -230,7 +230,7 @@

                                                                                                                                                          • include
                                                                                                                                                          • barry
                                                                                                                                                          • model-meat.hpp
                                                                                                                                                            • -
                                                                                                                                                          • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                            • +
                                                                                                                                                          • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                          diff --git a/model-meat_8hpp_source.html b/model-meat_8hpp_source.html index 12721229d..97bbb2d9d 100644 --- a/model-meat_8hpp_source.html +++ b/model-meat_8hpp_source.html @@ -229,1511 +229,1626 @@
                                                                                                                                                          136  size_t ncores
                                                                                                                                                          137 ) {
                                                                                                                                                          138 
                                                                                                                                                          -
                                                                                                                                                          139  // Barrier to make sure paralelization makes sense
                                                                                                                                                          -
                                                                                                                                                          140  if ((ncores > 1u) && (stats_support.size() < 1000u))
                                                                                                                                                          -
                                                                                                                                                          141  ncores = 1u;
                                                                                                                                                          -
                                                                                                                                                          142 
                                                                                                                                                          -
                                                                                                                                                          143  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                                                                                          -
                                                                                                                                                          144  #pragma omp parallel for firstprivate(params) num_threads(ncores) \
                                                                                                                                                          -
                                                                                                                                                          145  shared(stats_support, normalizing_constants, first_calc_done) \
                                                                                                                                                          -
                                                                                                                                                          146  default(none)
                                                                                                                                                          -
                                                                                                                                                          147  #endif
                                                                                                                                                          -
                                                                                                                                                          148  for (size_t i = 0u; i < stats_support.size(); ++i)
                                                                                                                                                          -
                                                                                                                                                          149  {
                                                                                                                                                          -
                                                                                                                                                          150 
                                                                                                                                                          -
                                                                                                                                                          151  size_t k = params.size() + 1u;
                                                                                                                                                          -
                                                                                                                                                          152  size_t n = stats_support[i].size() / k;
                                                                                                                                                          +
                                                                                                                                                          139  const size_t n = stats_support_sizes.size();
                                                                                                                                                          +
                                                                                                                                                          140 
                                                                                                                                                          +
                                                                                                                                                          141  // Barrier to make sure paralelization makes sense
                                                                                                                                                          +
                                                                                                                                                          142  if ((ncores > 1u) && (n < 128u))
                                                                                                                                                          +
                                                                                                                                                          143  ncores = 1u;
                                                                                                                                                          +
                                                                                                                                                          144 
                                                                                                                                                          +
                                                                                                                                                          145  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                                                                                          +
                                                                                                                                                          146  #pragma omp parallel for firstprivate(params) num_threads(ncores) \
                                                                                                                                                          +
                                                                                                                                                          147  shared(n, normalizing_constants, first_calc_done, \
                                                                                                                                                          +
                                                                                                                                                          148  stats_support, stats_support_sizes, stats_support_sizes_acc) \
                                                                                                                                                          +
                                                                                                                                                          149  default(none)
                                                                                                                                                          +
                                                                                                                                                          150  #endif
                                                                                                                                                          +
                                                                                                                                                          151  for (size_t i = 0u; i < n; ++i)
                                                                                                                                                          +
                                                                                                                                                          152  {
                                                                                                                                                          153 
                                                                                                                                                          -
                                                                                                                                                          154  first_calc_done[i] = true;
                                                                                                                                                          -
                                                                                                                                                          155  normalizing_constants[i] = update_normalizing_constant(
                                                                                                                                                          -
                                                                                                                                                          156  params, &stats_support[i][0u], k, n
                                                                                                                                                          -
                                                                                                                                                          157  );
                                                                                                                                                          -
                                                                                                                                                          158 
                                                                                                                                                          -
                                                                                                                                                          159  }
                                                                                                                                                          -
                                                                                                                                                          160 
                                                                                                                                                          -
                                                                                                                                                          161  return;
                                                                                                                                                          -
                                                                                                                                                          162 
                                                                                                                                                          -
                                                                                                                                                          163 }
                                                                                                                                                          -
                                                                                                                                                          164 
                                                                                                                                                          -
                                                                                                                                                          165 template <
                                                                                                                                                          -
                                                                                                                                                          166  typename Array_Type,
                                                                                                                                                          -
                                                                                                                                                          167  typename Data_Counter_Type,
                                                                                                                                                          -
                                                                                                                                                          168  typename Data_Rule_Type,
                                                                                                                                                          -
                                                                                                                                                          169  typename Data_Rule_Dyn_Type
                                                                                                                                                          -
                                                                                                                                                          170  >
                                                                                                                                                          -
                                                                                                                                                          171 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model() :
                                                                                                                                                          -
                                                                                                                                                          172  stats_support(0u),
                                                                                                                                                          -
                                                                                                                                                          173  stats_support_n_arrays(0u),
                                                                                                                                                          -
                                                                                                                                                          174  stats_target(0u), arrays2support(0u),
                                                                                                                                                          -
                                                                                                                                                          175  keys2support(0u),
                                                                                                                                                          -
                                                                                                                                                          176  pset_arrays(0u), pset_stats(0u),
                                                                                                                                                          -
                                                                                                                                                          177  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                                                                                          -
                                                                                                                                                          178  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                                                                                          -
                                                                                                                                                          179  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                                                                                          -
                                                                                                                                                          180  support_fun(), counter_fun(), delete_counters(true),
                                                                                                                                                          -
                                                                                                                                                          181  delete_rules(true),
                                                                                                                                                          -
                                                                                                                                                          182  delete_rules_dyn(true),
                                                                                                                                                          -
                                                                                                                                                          183  transform_model_fun(nullptr),
                                                                                                                                                          -
                                                                                                                                                          184  transform_model_term_names(0u)
                                                                                                                                                          -
                                                                                                                                                          185 {
                                                                                                                                                          -
                                                                                                                                                          186 
                                                                                                                                                          -
                                                                                                                                                          187  // Counters are shared
                                                                                                                                                          -
                                                                                                                                                          188  support_fun.set_counters(counters);
                                                                                                                                                          -
                                                                                                                                                          189  counter_fun.set_counters(counters);
                                                                                                                                                          -
                                                                                                                                                          190 
                                                                                                                                                          -
                                                                                                                                                          191  // Rules are shared
                                                                                                                                                          -
                                                                                                                                                          192  support_fun.set_rules(rules);
                                                                                                                                                          -
                                                                                                                                                          193  support_fun.set_rules_dyn(rules_dyn);
                                                                                                                                                          -
                                                                                                                                                          194 
                                                                                                                                                          -
                                                                                                                                                          195  return;
                                                                                                                                                          -
                                                                                                                                                          196 
                                                                                                                                                          -
                                                                                                                                                          197 }
                                                                                                                                                          -
                                                                                                                                                          198 
                                                                                                                                                          -
                                                                                                                                                          199 template <
                                                                                                                                                          -
                                                                                                                                                          200  typename Array_Type,
                                                                                                                                                          -
                                                                                                                                                          201  typename Data_Counter_Type,
                                                                                                                                                          -
                                                                                                                                                          202  typename Data_Rule_Type,
                                                                                                                                                          -
                                                                                                                                                          203  typename Data_Rule_Dyn_Type
                                                                                                                                                          -
                                                                                                                                                          204  >
                                                                                                                                                          -
                                                                                                                                                          205 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model(
                                                                                                                                                          -
                                                                                                                                                          206  size_t size_
                                                                                                                                                          -
                                                                                                                                                          207  ) :
                                                                                                                                                          -
                                                                                                                                                          208  stats_support(0u),
                                                                                                                                                          -
                                                                                                                                                          209  stats_support_n_arrays(0u),
                                                                                                                                                          -
                                                                                                                                                          210  stats_target(0u), arrays2support(0u), keys2support(0u),
                                                                                                                                                          -
                                                                                                                                                          211  pset_arrays(0u), pset_stats(0u),
                                                                                                                                                          -
                                                                                                                                                          212  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                                                                                          -
                                                                                                                                                          213  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                                                                                          -
                                                                                                                                                          214  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                                                                                          -
                                                                                                                                                          215  support_fun(), counter_fun(), delete_counters(true),
                                                                                                                                                          -
                                                                                                                                                          216  delete_rules(true),
                                                                                                                                                          -
                                                                                                                                                          217  delete_rules_dyn(true),
                                                                                                                                                          -
                                                                                                                                                          218  transform_model_fun(nullptr),
                                                                                                                                                          -
                                                                                                                                                          219  transform_model_term_names(0u)
                                                                                                                                                          -
                                                                                                                                                          220 {
                                                                                                                                                          -
                                                                                                                                                          221 
                                                                                                                                                          -
                                                                                                                                                          222  stats_target.reserve(size_);
                                                                                                                                                          -
                                                                                                                                                          223  arrays2support.reserve(size_);
                                                                                                                                                          -
                                                                                                                                                          224 
                                                                                                                                                          -
                                                                                                                                                          225  // Counters are shared
                                                                                                                                                          -
                                                                                                                                                          226  support_fun.set_counters(counters);
                                                                                                                                                          -
                                                                                                                                                          227  counter_fun.set_counters(counters);
                                                                                                                                                          -
                                                                                                                                                          228 
                                                                                                                                                          -
                                                                                                                                                          229  // Rules are shared
                                                                                                                                                          -
                                                                                                                                                          230  support_fun.set_rules(rules);
                                                                                                                                                          -
                                                                                                                                                          231  support_fun.set_rules_dyn(rules_dyn);
                                                                                                                                                          -
                                                                                                                                                          232 
                                                                                                                                                          -
                                                                                                                                                          233  return;
                                                                                                                                                          -
                                                                                                                                                          234 
                                                                                                                                                          -
                                                                                                                                                          235 }
                                                                                                                                                          -
                                                                                                                                                          236 
                                                                                                                                                          -
                                                                                                                                                          237 template <
                                                                                                                                                          -
                                                                                                                                                          238  typename Array_Type,
                                                                                                                                                          -
                                                                                                                                                          239  typename Data_Counter_Type,
                                                                                                                                                          -
                                                                                                                                                          240  typename Data_Rule_Type,
                                                                                                                                                          -
                                                                                                                                                          241  typename Data_Rule_Dyn_Type
                                                                                                                                                          -
                                                                                                                                                          242  >
                                                                                                                                                          -
                                                                                                                                                          243 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model(
                                                                                                                                                          -
                                                                                                                                                          244  const Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> & Model_
                                                                                                                                                          -
                                                                                                                                                          245  ) :
                                                                                                                                                          -
                                                                                                                                                          246  stats_support(Model_.stats_support),
                                                                                                                                                          -
                                                                                                                                                          247  stats_support_n_arrays(Model_.stats_support_n_arrays),
                                                                                                                                                          -
                                                                                                                                                          248  stats_target(Model_.stats_target),
                                                                                                                                                          -
                                                                                                                                                          249  arrays2support(Model_.arrays2support),
                                                                                                                                                          -
                                                                                                                                                          250  keys2support(Model_.keys2support),
                                                                                                                                                          -
                                                                                                                                                          251  pset_arrays(Model_.pset_arrays),
                                                                                                                                                          -
                                                                                                                                                          252  pset_stats(Model_.pset_stats),
                                                                                                                                                          -
                                                                                                                                                          253  counters(new Counters<Array_Type,Data_Counter_Type>(*(Model_.counters))),
                                                                                                                                                          -
                                                                                                                                                          254  rules(new Rules<Array_Type,Data_Rule_Type>(*(Model_.rules))),
                                                                                                                                                          -
                                                                                                                                                          255  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>(*(Model_.rules_dyn))),
                                                                                                                                                          -
                                                                                                                                                          256  support_fun(),
                                                                                                                                                          -
                                                                                                                                                          257  counter_fun(),
                                                                                                                                                          -
                                                                                                                                                          258  params_last(Model_.params_last),
                                                                                                                                                          -
                                                                                                                                                          259  normalizing_constants(Model_.normalizing_constants),
                                                                                                                                                          -
                                                                                                                                                          260  first_calc_done(Model_.first_calc_done),
                                                                                                                                                          -
                                                                                                                                                          261  delete_counters(true),
                                                                                                                                                          -
                                                                                                                                                          262  delete_rules(true),
                                                                                                                                                          -
                                                                                                                                                          263  delete_rules_dyn(true),
                                                                                                                                                          -
                                                                                                                                                          264  transform_model_fun(Model_.transform_model_fun),
                                                                                                                                                          -
                                                                                                                                                          265  transform_model_term_names(Model_.transform_model_term_names)
                                                                                                                                                          -
                                                                                                                                                          266  {
                                                                                                                                                          -
                                                                                                                                                          267 
                                                                                                                                                          -
                                                                                                                                                          268  // Counters are shared
                                                                                                                                                          -
                                                                                                                                                          269  support_fun.set_counters(counters);
                                                                                                                                                          -
                                                                                                                                                          270  counter_fun.set_counters(counters);
                                                                                                                                                          -
                                                                                                                                                          271 
                                                                                                                                                          -
                                                                                                                                                          272  // Rules are shared
                                                                                                                                                          -
                                                                                                                                                          273  support_fun.set_rules(rules);
                                                                                                                                                          -
                                                                                                                                                          274  support_fun.set_rules_dyn(rules_dyn);
                                                                                                                                                          -
                                                                                                                                                          275 
                                                                                                                                                          -
                                                                                                                                                          276  return;
                                                                                                                                                          -
                                                                                                                                                          277 
                                                                                                                                                          -
                                                                                                                                                          278 }
                                                                                                                                                          -
                                                                                                                                                          279 
                                                                                                                                                          -
                                                                                                                                                          280 template <
                                                                                                                                                          -
                                                                                                                                                          281  typename Array_Type,
                                                                                                                                                          -
                                                                                                                                                          282  typename Data_Counter_Type,
                                                                                                                                                          -
                                                                                                                                                          283  typename Data_Rule_Type,
                                                                                                                                                          -
                                                                                                                                                          284  typename Data_Rule_Dyn_Type
                                                                                                                                                          -
                                                                                                                                                          285  >
                                                                                                                                                          -
                                                                                                                                                          286 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> &
                                                                                                                                                          -
                                                                                                                                                          287  Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::operator=(
                                                                                                                                                          -
                                                                                                                                                          288  const Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> & Model_
                                                                                                                                                          -
                                                                                                                                                          289 ) {
                                                                                                                                                          -
                                                                                                                                                          290 
                                                                                                                                                          -
                                                                                                                                                          291  // Clearing
                                                                                                                                                          -
                                                                                                                                                          292  if (this != &Model_) {
                                                                                                                                                          -
                                                                                                                                                          293 
                                                                                                                                                          -
                                                                                                                                                          294  if (delete_counters)
                                                                                                                                                          -
                                                                                                                                                          295  delete counters;
                                                                                                                                                          -
                                                                                                                                                          296 
                                                                                                                                                          -
                                                                                                                                                          297  if (delete_rules)
                                                                                                                                                          -
                                                                                                                                                          298  delete rules;
                                                                                                                                                          -
                                                                                                                                                          299 
                                                                                                                                                          -
                                                                                                                                                          300  if (delete_rules_dyn)
                                                                                                                                                          -
                                                                                                                                                          301  delete rules_dyn;
                                                                                                                                                          -
                                                                                                                                                          302 
                                                                                                                                                          -
                                                                                                                                                          303  stats_support = Model_.stats_support;
                                                                                                                                                          -
                                                                                                                                                          304  stats_support_n_arrays = Model_.stats_support_n_arrays;
                                                                                                                                                          -
                                                                                                                                                          305  stats_target = Model_.stats_target;
                                                                                                                                                          -
                                                                                                                                                          306  arrays2support = Model_.arrays2support;
                                                                                                                                                          -
                                                                                                                                                          307  keys2support = Model_.keys2support;
                                                                                                                                                          -
                                                                                                                                                          308  pset_arrays = Model_.pset_arrays;
                                                                                                                                                          -
                                                                                                                                                          309  pset_stats = Model_.pset_stats;
                                                                                                                                                          -
                                                                                                                                                          310  counters = new Counters<Array_Type,Data_Counter_Type>(*(Model_.counters));
                                                                                                                                                          -
                                                                                                                                                          311  rules = new Rules<Array_Type,Data_Rule_Type>(*(Model_.rules));
                                                                                                                                                          -
                                                                                                                                                          312  rules_dyn = new Rules<Array_Type,Data_Rule_Dyn_Type>(*(Model_.rules_dyn));
                                                                                                                                                          -
                                                                                                                                                          313  delete_counters = true;
                                                                                                                                                          -
                                                                                                                                                          314  delete_rules = true;
                                                                                                                                                          -
                                                                                                                                                          315  delete_rules_dyn = true;
                                                                                                                                                          -
                                                                                                                                                          316  params_last = Model_.params_last;
                                                                                                                                                          -
                                                                                                                                                          317  normalizing_constants = Model_.normalizing_constants;
                                                                                                                                                          -
                                                                                                                                                          318  first_calc_done = Model_.first_calc_done;
                                                                                                                                                          -
                                                                                                                                                          319  transform_model_fun = Model_.transform_model_fun;
                                                                                                                                                          -
                                                                                                                                                          320  transform_model_term_names = Model_.transform_model_term_names;
                                                                                                                                                          -
                                                                                                                                                          321 
                                                                                                                                                          -
                                                                                                                                                          322  // Counters are shared
                                                                                                                                                          -
                                                                                                                                                          323  support_fun.set_counters(counters);
                                                                                                                                                          -
                                                                                                                                                          324  counter_fun.set_counters(counters);
                                                                                                                                                          -
                                                                                                                                                          325 
                                                                                                                                                          -
                                                                                                                                                          326  // Rules are shared
                                                                                                                                                          -
                                                                                                                                                          327  support_fun.set_rules(rules);
                                                                                                                                                          -
                                                                                                                                                          328  support_fun.set_rules_dyn(rules_dyn);
                                                                                                                                                          -
                                                                                                                                                          329 
                                                                                                                                                          -
                                                                                                                                                          330  }
                                                                                                                                                          -
                                                                                                                                                          331 
                                                                                                                                                          -
                                                                                                                                                          332  return *this;
                                                                                                                                                          -
                                                                                                                                                          333 
                                                                                                                                                          -
                                                                                                                                                          334 }
                                                                                                                                                          -
                                                                                                                                                          335 
                                                                                                                                                          -
                                                                                                                                                          336 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          337 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: store_psets() noexcept {
                                                                                                                                                          -
                                                                                                                                                          338  // if (with_pset)
                                                                                                                                                          -
                                                                                                                                                          339  // throw std::logic_error("Powerset storage alreay activated.");
                                                                                                                                                          -
                                                                                                                                                          340  with_pset = true;
                                                                                                                                                          -
                                                                                                                                                          341  return;
                                                                                                                                                          -
                                                                                                                                                          342 }
                                                                                                                                                          -
                                                                                                                                                          343 
                                                                                                                                                          -
                                                                                                                                                          344 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          345 inline std::vector< double > Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: gen_key(
                                                                                                                                                          -
                                                                                                                                                          346  const Array_Type & Array_
                                                                                                                                                          -
                                                                                                                                                          347 ) {
                                                                                                                                                          -
                                                                                                                                                          348  return this->counters->gen_hash(Array_);
                                                                                                                                                          -
                                                                                                                                                          349 }
                                                                                                                                                          -
                                                                                                                                                          350 
                                                                                                                                                          -
                                                                                                                                                          351 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          352 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_counter(
                                                                                                                                                          -
                                                                                                                                                          353  Counter<Array_Type, Data_Counter_Type> & counter
                                                                                                                                                          -
                                                                                                                                                          354 ) {
                                                                                                                                                          -
                                                                                                                                                          355 
                                                                                                                                                          -
                                                                                                                                                          356  counters->add_counter(counter, Data_Counter_Type());
                                                                                                                                                          -
                                                                                                                                                          357  return;
                                                                                                                                                          -
                                                                                                                                                          358 }
                                                                                                                                                          -
                                                                                                                                                          359 
                                                                                                                                                          -
                                                                                                                                                          360 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          361 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_counter(
                                                                                                                                                          -
                                                                                                                                                          362  Counter_fun_type<Array_Type,Data_Counter_Type> count_fun_,
                                                                                                                                                          -
                                                                                                                                                          363  Counter_fun_type<Array_Type,Data_Counter_Type> init_fun_,
                                                                                                                                                          -
                                                                                                                                                          364  Data_Counter_Type data_
                                                                                                                                                          +
                                                                                                                                                          154  size_t k = params.size() + 1u;
                                                                                                                                                          +
                                                                                                                                                          155  size_t n = stats_support_sizes[i];
                                                                                                                                                          +
                                                                                                                                                          156 
                                                                                                                                                          +
                                                                                                                                                          157  first_calc_done[i] = true;
                                                                                                                                                          +
                                                                                                                                                          158  normalizing_constants[i] = update_normalizing_constant(
                                                                                                                                                          +
                                                                                                                                                          159  params, &stats_support[
                                                                                                                                                          +
                                                                                                                                                          160  stats_support_sizes_acc[i] * k
                                                                                                                                                          +
                                                                                                                                                          161  ], k, n
                                                                                                                                                          +
                                                                                                                                                          162  );
                                                                                                                                                          +
                                                                                                                                                          163 
                                                                                                                                                          +
                                                                                                                                                          164  }
                                                                                                                                                          +
                                                                                                                                                          165 
                                                                                                                                                          +
                                                                                                                                                          166  return;
                                                                                                                                                          +
                                                                                                                                                          167 
                                                                                                                                                          +
                                                                                                                                                          168 }
                                                                                                                                                          +
                                                                                                                                                          169 
                                                                                                                                                          +
                                                                                                                                                          170 template <
                                                                                                                                                          +
                                                                                                                                                          171  typename Array_Type,
                                                                                                                                                          +
                                                                                                                                                          172  typename Data_Counter_Type,
                                                                                                                                                          +
                                                                                                                                                          173  typename Data_Rule_Type,
                                                                                                                                                          +
                                                                                                                                                          174  typename Data_Rule_Dyn_Type
                                                                                                                                                          +
                                                                                                                                                          175  >
                                                                                                                                                          +
                                                                                                                                                          176 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model() :
                                                                                                                                                          +
                                                                                                                                                          177  stats_support(0u),
                                                                                                                                                          +
                                                                                                                                                          178  stats_support_sizes(0u),
                                                                                                                                                          +
                                                                                                                                                          179  stats_support_sizes_acc(0u),
                                                                                                                                                          +
                                                                                                                                                          180  stats_support_n_arrays(0u),
                                                                                                                                                          +
                                                                                                                                                          181  stats_target(0u), arrays2support(0u),
                                                                                                                                                          +
                                                                                                                                                          182  keys2support(0u),
                                                                                                                                                          +
                                                                                                                                                          183  pset_arrays(0u), pset_stats(0u),
                                                                                                                                                          +
                                                                                                                                                          184  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                                                                                          +
                                                                                                                                                          185  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                                                                                          +
                                                                                                                                                          186  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                                                                                          +
                                                                                                                                                          187  support_fun(), counter_fun(), delete_counters(true),
                                                                                                                                                          +
                                                                                                                                                          188  delete_rules(true),
                                                                                                                                                          +
                                                                                                                                                          189  delete_rules_dyn(true),
                                                                                                                                                          +
                                                                                                                                                          190  transform_model_fun(nullptr),
                                                                                                                                                          +
                                                                                                                                                          191  transform_model_term_names(0u)
                                                                                                                                                          +
                                                                                                                                                          192 {
                                                                                                                                                          +
                                                                                                                                                          193 
                                                                                                                                                          +
                                                                                                                                                          194  // Counters are shared
                                                                                                                                                          +
                                                                                                                                                          195  support_fun.set_counters(counters);
                                                                                                                                                          +
                                                                                                                                                          196  counter_fun.set_counters(counters);
                                                                                                                                                          +
                                                                                                                                                          197 
                                                                                                                                                          +
                                                                                                                                                          198  // Rules are shared
                                                                                                                                                          +
                                                                                                                                                          199  support_fun.set_rules(rules);
                                                                                                                                                          +
                                                                                                                                                          200  support_fun.set_rules_dyn(rules_dyn);
                                                                                                                                                          +
                                                                                                                                                          201 
                                                                                                                                                          +
                                                                                                                                                          202  return;
                                                                                                                                                          +
                                                                                                                                                          203 
                                                                                                                                                          +
                                                                                                                                                          204 }
                                                                                                                                                          +
                                                                                                                                                          205 
                                                                                                                                                          +
                                                                                                                                                          206 template <
                                                                                                                                                          +
                                                                                                                                                          207  typename Array_Type,
                                                                                                                                                          +
                                                                                                                                                          208  typename Data_Counter_Type,
                                                                                                                                                          +
                                                                                                                                                          209  typename Data_Rule_Type,
                                                                                                                                                          +
                                                                                                                                                          210  typename Data_Rule_Dyn_Type
                                                                                                                                                          +
                                                                                                                                                          211  >
                                                                                                                                                          +
                                                                                                                                                          212 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model(
                                                                                                                                                          +
                                                                                                                                                          213  size_t size_
                                                                                                                                                          +
                                                                                                                                                          214  ) :
                                                                                                                                                          +
                                                                                                                                                          215  stats_support(0u),
                                                                                                                                                          +
                                                                                                                                                          216  stats_support_sizes(0u),
                                                                                                                                                          +
                                                                                                                                                          217  stats_support_sizes_acc(0u),
                                                                                                                                                          +
                                                                                                                                                          218  stats_support_n_arrays(0u),
                                                                                                                                                          +
                                                                                                                                                          219  stats_target(0u), arrays2support(0u), keys2support(0u),
                                                                                                                                                          +
                                                                                                                                                          220  pset_arrays(0u), pset_stats(0u),
                                                                                                                                                          +
                                                                                                                                                          221  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                                                                                          +
                                                                                                                                                          222  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                                                                                          +
                                                                                                                                                          223  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                                                                                          +
                                                                                                                                                          224  support_fun(), counter_fun(), delete_counters(true),
                                                                                                                                                          +
                                                                                                                                                          225  delete_rules(true),
                                                                                                                                                          +
                                                                                                                                                          226  delete_rules_dyn(true),
                                                                                                                                                          +
                                                                                                                                                          227  transform_model_fun(nullptr),
                                                                                                                                                          +
                                                                                                                                                          228  transform_model_term_names(0u)
                                                                                                                                                          +
                                                                                                                                                          229 {
                                                                                                                                                          +
                                                                                                                                                          230 
                                                                                                                                                          +
                                                                                                                                                          231  stats_target.reserve(size_);
                                                                                                                                                          +
                                                                                                                                                          232  arrays2support.reserve(size_);
                                                                                                                                                          +
                                                                                                                                                          233 
                                                                                                                                                          +
                                                                                                                                                          234  // Counters are shared
                                                                                                                                                          +
                                                                                                                                                          235  support_fun.set_counters(counters);
                                                                                                                                                          +
                                                                                                                                                          236  counter_fun.set_counters(counters);
                                                                                                                                                          +
                                                                                                                                                          237 
                                                                                                                                                          +
                                                                                                                                                          238  // Rules are shared
                                                                                                                                                          +
                                                                                                                                                          239  support_fun.set_rules(rules);
                                                                                                                                                          +
                                                                                                                                                          240  support_fun.set_rules_dyn(rules_dyn);
                                                                                                                                                          +
                                                                                                                                                          241 
                                                                                                                                                          +
                                                                                                                                                          242  return;
                                                                                                                                                          +
                                                                                                                                                          243 
                                                                                                                                                          +
                                                                                                                                                          244 }
                                                                                                                                                          +
                                                                                                                                                          245 
                                                                                                                                                          +
                                                                                                                                                          246 template <
                                                                                                                                                          +
                                                                                                                                                          247  typename Array_Type,
                                                                                                                                                          +
                                                                                                                                                          248  typename Data_Counter_Type,
                                                                                                                                                          +
                                                                                                                                                          249  typename Data_Rule_Type,
                                                                                                                                                          +
                                                                                                                                                          250  typename Data_Rule_Dyn_Type
                                                                                                                                                          +
                                                                                                                                                          251  >
                                                                                                                                                          +
                                                                                                                                                          252 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model(
                                                                                                                                                          +
                                                                                                                                                          253  const Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> & Model_
                                                                                                                                                          +
                                                                                                                                                          254  ) :
                                                                                                                                                          +
                                                                                                                                                          255  stats_support(Model_.stats_support),
                                                                                                                                                          +
                                                                                                                                                          256  stats_support_sizes(Model_.stats_support_sizes),
                                                                                                                                                          +
                                                                                                                                                          257  stats_support_sizes_acc(Model_.stats_support_sizes_acc),
                                                                                                                                                          +
                                                                                                                                                          258  stats_support_n_arrays(Model_.stats_support_n_arrays),
                                                                                                                                                          +
                                                                                                                                                          259  stats_target(Model_.stats_target),
                                                                                                                                                          +
                                                                                                                                                          260  arrays2support(Model_.arrays2support),
                                                                                                                                                          +
                                                                                                                                                          261  keys2support(Model_.keys2support),
                                                                                                                                                          +
                                                                                                                                                          262  pset_arrays(Model_.pset_arrays),
                                                                                                                                                          +
                                                                                                                                                          263  pset_stats(Model_.pset_stats),
                                                                                                                                                          +
                                                                                                                                                          264  counters(new Counters<Array_Type,Data_Counter_Type>(*(Model_.counters))),
                                                                                                                                                          +
                                                                                                                                                          265  rules(new Rules<Array_Type,Data_Rule_Type>(*(Model_.rules))),
                                                                                                                                                          +
                                                                                                                                                          266  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>(*(Model_.rules_dyn))),
                                                                                                                                                          +
                                                                                                                                                          267  support_fun(),
                                                                                                                                                          +
                                                                                                                                                          268  counter_fun(),
                                                                                                                                                          +
                                                                                                                                                          269  params_last(Model_.params_last),
                                                                                                                                                          +
                                                                                                                                                          270  normalizing_constants(Model_.normalizing_constants),
                                                                                                                                                          +
                                                                                                                                                          271  first_calc_done(Model_.first_calc_done),
                                                                                                                                                          +
                                                                                                                                                          272  delete_counters(true),
                                                                                                                                                          +
                                                                                                                                                          273  delete_rules(true),
                                                                                                                                                          +
                                                                                                                                                          274  delete_rules_dyn(true),
                                                                                                                                                          +
                                                                                                                                                          275  transform_model_fun(Model_.transform_model_fun),
                                                                                                                                                          +
                                                                                                                                                          276  transform_model_term_names(Model_.transform_model_term_names)
                                                                                                                                                          +
                                                                                                                                                          277  {
                                                                                                                                                          +
                                                                                                                                                          278 
                                                                                                                                                          +
                                                                                                                                                          279  // Counters are shared
                                                                                                                                                          +
                                                                                                                                                          280  support_fun.set_counters(counters);
                                                                                                                                                          +
                                                                                                                                                          281  counter_fun.set_counters(counters);
                                                                                                                                                          +
                                                                                                                                                          282 
                                                                                                                                                          +
                                                                                                                                                          283  // Rules are shared
                                                                                                                                                          +
                                                                                                                                                          284  support_fun.set_rules(rules);
                                                                                                                                                          +
                                                                                                                                                          285  support_fun.set_rules_dyn(rules_dyn);
                                                                                                                                                          +
                                                                                                                                                          286 
                                                                                                                                                          +
                                                                                                                                                          287  return;
                                                                                                                                                          +
                                                                                                                                                          288 
                                                                                                                                                          +
                                                                                                                                                          289 }
                                                                                                                                                          +
                                                                                                                                                          290 
                                                                                                                                                          +
                                                                                                                                                          291 template <
                                                                                                                                                          +
                                                                                                                                                          292  typename Array_Type,
                                                                                                                                                          +
                                                                                                                                                          293  typename Data_Counter_Type,
                                                                                                                                                          +
                                                                                                                                                          294  typename Data_Rule_Type,
                                                                                                                                                          +
                                                                                                                                                          295  typename Data_Rule_Dyn_Type
                                                                                                                                                          +
                                                                                                                                                          296  >
                                                                                                                                                          +
                                                                                                                                                          297 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> &
                                                                                                                                                          +
                                                                                                                                                          298  Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::operator=(
                                                                                                                                                          +
                                                                                                                                                          299  const Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> & Model_
                                                                                                                                                          +
                                                                                                                                                          300 ) {
                                                                                                                                                          +
                                                                                                                                                          301 
                                                                                                                                                          +
                                                                                                                                                          302  // Clearing
                                                                                                                                                          +
                                                                                                                                                          303  if (this != &Model_) {
                                                                                                                                                          +
                                                                                                                                                          304 
                                                                                                                                                          +
                                                                                                                                                          305  if (delete_counters)
                                                                                                                                                          +
                                                                                                                                                          306  delete counters;
                                                                                                                                                          +
                                                                                                                                                          307 
                                                                                                                                                          +
                                                                                                                                                          308  if (delete_rules)
                                                                                                                                                          +
                                                                                                                                                          309  delete rules;
                                                                                                                                                          +
                                                                                                                                                          310 
                                                                                                                                                          +
                                                                                                                                                          311  if (delete_rules_dyn)
                                                                                                                                                          +
                                                                                                                                                          312  delete rules_dyn;
                                                                                                                                                          +
                                                                                                                                                          313 
                                                                                                                                                          +
                                                                                                                                                          314  stats_support = Model_.stats_support;
                                                                                                                                                          +
                                                                                                                                                          315  stats_support_sizes = Model_.stats_support_sizes;
                                                                                                                                                          +
                                                                                                                                                          316  stats_support_sizes_acc = Model_.stats_support_sizes_acc;
                                                                                                                                                          +
                                                                                                                                                          317  stats_support_n_arrays = Model_.stats_support_n_arrays;
                                                                                                                                                          +
                                                                                                                                                          318  stats_target = Model_.stats_target;
                                                                                                                                                          +
                                                                                                                                                          319  arrays2support = Model_.arrays2support;
                                                                                                                                                          +
                                                                                                                                                          320  keys2support = Model_.keys2support;
                                                                                                                                                          +
                                                                                                                                                          321  pset_arrays = Model_.pset_arrays;
                                                                                                                                                          +
                                                                                                                                                          322  pset_stats = Model_.pset_stats;
                                                                                                                                                          +
                                                                                                                                                          323  counters = new Counters<Array_Type,Data_Counter_Type>(*(Model_.counters));
                                                                                                                                                          +
                                                                                                                                                          324  rules = new Rules<Array_Type,Data_Rule_Type>(*(Model_.rules));
                                                                                                                                                          +
                                                                                                                                                          325  rules_dyn = new Rules<Array_Type,Data_Rule_Dyn_Type>(*(Model_.rules_dyn));
                                                                                                                                                          +
                                                                                                                                                          326  delete_counters = true;
                                                                                                                                                          +
                                                                                                                                                          327  delete_rules = true;
                                                                                                                                                          +
                                                                                                                                                          328  delete_rules_dyn = true;
                                                                                                                                                          +
                                                                                                                                                          329  params_last = Model_.params_last;
                                                                                                                                                          +
                                                                                                                                                          330  normalizing_constants = Model_.normalizing_constants;
                                                                                                                                                          +
                                                                                                                                                          331  first_calc_done = Model_.first_calc_done;
                                                                                                                                                          +
                                                                                                                                                          332  transform_model_fun = Model_.transform_model_fun;
                                                                                                                                                          +
                                                                                                                                                          333  transform_model_term_names = Model_.transform_model_term_names;
                                                                                                                                                          +
                                                                                                                                                          334 
                                                                                                                                                          +
                                                                                                                                                          335  // Counters are shared
                                                                                                                                                          +
                                                                                                                                                          336  support_fun.set_counters(counters);
                                                                                                                                                          +
                                                                                                                                                          337  counter_fun.set_counters(counters);
                                                                                                                                                          +
                                                                                                                                                          338 
                                                                                                                                                          +
                                                                                                                                                          339  // Rules are shared
                                                                                                                                                          +
                                                                                                                                                          340  support_fun.set_rules(rules);
                                                                                                                                                          +
                                                                                                                                                          341  support_fun.set_rules_dyn(rules_dyn);
                                                                                                                                                          +
                                                                                                                                                          342 
                                                                                                                                                          +
                                                                                                                                                          343  }
                                                                                                                                                          +
                                                                                                                                                          344 
                                                                                                                                                          +
                                                                                                                                                          345  return *this;
                                                                                                                                                          +
                                                                                                                                                          346 
                                                                                                                                                          +
                                                                                                                                                          347 }
                                                                                                                                                          +
                                                                                                                                                          348 
                                                                                                                                                          +
                                                                                                                                                          349 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          350 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: store_psets() noexcept {
                                                                                                                                                          +
                                                                                                                                                          351  with_pset = true;
                                                                                                                                                          +
                                                                                                                                                          352  return;
                                                                                                                                                          +
                                                                                                                                                          353 }
                                                                                                                                                          +
                                                                                                                                                          354 
                                                                                                                                                          +
                                                                                                                                                          355 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          356 inline std::vector< double > Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: gen_key(
                                                                                                                                                          +
                                                                                                                                                          357  const Array_Type & Array_
                                                                                                                                                          +
                                                                                                                                                          358 ) {
                                                                                                                                                          +
                                                                                                                                                          359  return this->counters->gen_hash(Array_);
                                                                                                                                                          +
                                                                                                                                                          360 }
                                                                                                                                                          +
                                                                                                                                                          361 
                                                                                                                                                          +
                                                                                                                                                          362 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          363 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_counter(
                                                                                                                                                          +
                                                                                                                                                          364  Counter<Array_Type, Data_Counter_Type> & counter
                                                                                                                                                          365 ) {
                                                                                                                                                          366 
                                                                                                                                                          -
                                                                                                                                                          367  counters->add_counter(
                                                                                                                                                          -
                                                                                                                                                          368  count_fun_,
                                                                                                                                                          -
                                                                                                                                                          369  init_fun_,
                                                                                                                                                          -
                                                                                                                                                          370  data_
                                                                                                                                                          -
                                                                                                                                                          371  );
                                                                                                                                                          -
                                                                                                                                                          372 
                                                                                                                                                          -
                                                                                                                                                          373  return;
                                                                                                                                                          -
                                                                                                                                                          374 
                                                                                                                                                          -
                                                                                                                                                          375 }
                                                                                                                                                          -
                                                                                                                                                          376 
                                                                                                                                                          -
                                                                                                                                                          377 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          378 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: set_counters(
                                                                                                                                                          -
                                                                                                                                                          379  Counters<Array_Type,Data_Counter_Type> * counters_
                                                                                                                                                          -
                                                                                                                                                          380 ) {
                                                                                                                                                          -
                                                                                                                                                          381 
                                                                                                                                                          -
                                                                                                                                                          382  if (delete_counters) {
                                                                                                                                                          -
                                                                                                                                                          383  delete counters;
                                                                                                                                                          -
                                                                                                                                                          384  delete_counters = false;
                                                                                                                                                          -
                                                                                                                                                          385  }
                                                                                                                                                          -
                                                                                                                                                          386 
                                                                                                                                                          -
                                                                                                                                                          387  this->counters = counters_;
                                                                                                                                                          -
                                                                                                                                                          388  support_fun.set_counters(counters);
                                                                                                                                                          -
                                                                                                                                                          389  counter_fun.set_counters(counters);
                                                                                                                                                          -
                                                                                                                                                          390 
                                                                                                                                                          -
                                                                                                                                                          391  return;
                                                                                                                                                          -
                                                                                                                                                          392 
                                                                                                                                                          -
                                                                                                                                                          393 }
                                                                                                                                                          -
                                                                                                                                                          394 
                                                                                                                                                          -
                                                                                                                                                          395 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          396 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_hasher(
                                                                                                                                                          -
                                                                                                                                                          397  Hasher_fun_type<Array_Type,Data_Counter_Type> fun_
                                                                                                                                                          -
                                                                                                                                                          398 ) {
                                                                                                                                                          -
                                                                                                                                                          399 
                                                                                                                                                          -
                                                                                                                                                          400  counters->add_hash(fun_);
                                                                                                                                                          -
                                                                                                                                                          401 
                                                                                                                                                          -
                                                                                                                                                          402 }
                                                                                                                                                          -
                                                                                                                                                          403 
                                                                                                                                                          +
                                                                                                                                                          367  counters->add_counter(counter, Data_Counter_Type());
                                                                                                                                                          +
                                                                                                                                                          368  return;
                                                                                                                                                          +
                                                                                                                                                          369 }
                                                                                                                                                          +
                                                                                                                                                          370 
                                                                                                                                                          +
                                                                                                                                                          371 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          372 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_counter(
                                                                                                                                                          +
                                                                                                                                                          373  Counter_fun_type<Array_Type,Data_Counter_Type> count_fun_,
                                                                                                                                                          +
                                                                                                                                                          374  Counter_fun_type<Array_Type,Data_Counter_Type> init_fun_,
                                                                                                                                                          +
                                                                                                                                                          375  Data_Counter_Type data_
                                                                                                                                                          +
                                                                                                                                                          376 ) {
                                                                                                                                                          +
                                                                                                                                                          377 
                                                                                                                                                          +
                                                                                                                                                          378  counters->add_counter(
                                                                                                                                                          +
                                                                                                                                                          379  count_fun_,
                                                                                                                                                          +
                                                                                                                                                          380  init_fun_,
                                                                                                                                                          +
                                                                                                                                                          381  data_
                                                                                                                                                          +
                                                                                                                                                          382  );
                                                                                                                                                          +
                                                                                                                                                          383 
                                                                                                                                                          +
                                                                                                                                                          384  return;
                                                                                                                                                          +
                                                                                                                                                          385 
                                                                                                                                                          +
                                                                                                                                                          386 }
                                                                                                                                                          +
                                                                                                                                                          387 
                                                                                                                                                          +
                                                                                                                                                          388 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          389 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: set_counters(
                                                                                                                                                          +
                                                                                                                                                          390  Counters<Array_Type,Data_Counter_Type> * counters_
                                                                                                                                                          +
                                                                                                                                                          391 ) {
                                                                                                                                                          +
                                                                                                                                                          392 
                                                                                                                                                          +
                                                                                                                                                          393  if (delete_counters) {
                                                                                                                                                          +
                                                                                                                                                          394  delete counters;
                                                                                                                                                          +
                                                                                                                                                          395  delete_counters = false;
                                                                                                                                                          +
                                                                                                                                                          396  }
                                                                                                                                                          +
                                                                                                                                                          397 
                                                                                                                                                          +
                                                                                                                                                          398  this->counters = counters_;
                                                                                                                                                          +
                                                                                                                                                          399  support_fun.set_counters(counters);
                                                                                                                                                          +
                                                                                                                                                          400  counter_fun.set_counters(counters);
                                                                                                                                                          +
                                                                                                                                                          401 
                                                                                                                                                          +
                                                                                                                                                          402  return;
                                                                                                                                                          +
                                                                                                                                                          403 
                                                                                                                                                          +
                                                                                                                                                          404 }
                                                                                                                                                          405 
                                                                                                                                                          406 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          407 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_rule(
                                                                                                                                                          -
                                                                                                                                                          408  Rule<Array_Type, Data_Rule_Type> & rules
                                                                                                                                                          +
                                                                                                                                                          407 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_hasher(
                                                                                                                                                          +
                                                                                                                                                          408  Hasher_fun_type<Array_Type,Data_Counter_Type> fun_
                                                                                                                                                          409 ) {
                                                                                                                                                          -
                                                                                                                                                          410 
                                                                                                                                                          -
                                                                                                                                                          411  rules->add_rule(rules, Data_Rule_Type());
                                                                                                                                                          -
                                                                                                                                                          412  return;
                                                                                                                                                          +
                                                                                                                                                          410 
                                                                                                                                                          +
                                                                                                                                                          411  counters->add_hash(fun_);
                                                                                                                                                          +
                                                                                                                                                          412 
                                                                                                                                                          413 }
                                                                                                                                                          414 
                                                                                                                                                          -
                                                                                                                                                          415 
                                                                                                                                                          -
                                                                                                                                                          416 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          417 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: set_rules(
                                                                                                                                                          -
                                                                                                                                                          418  Rules<Array_Type,Data_Rule_Type> * rules_
                                                                                                                                                          -
                                                                                                                                                          419 ) {
                                                                                                                                                          -
                                                                                                                                                          420 
                                                                                                                                                          -
                                                                                                                                                          421  if (delete_rules)
                                                                                                                                                          -
                                                                                                                                                          422  delete rules;
                                                                                                                                                          -
                                                                                                                                                          423 
                                                                                                                                                          -
                                                                                                                                                          424  this->rules = rules_;
                                                                                                                                                          -
                                                                                                                                                          425  this->delete_rules = false;
                                                                                                                                                          +
                                                                                                                                                          416 
                                                                                                                                                          +
                                                                                                                                                          417 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          418 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_rule(
                                                                                                                                                          +
                                                                                                                                                          419  Rule<Array_Type, Data_Rule_Type> & rules
                                                                                                                                                          +
                                                                                                                                                          420 ) {
                                                                                                                                                          +
                                                                                                                                                          421 
                                                                                                                                                          +
                                                                                                                                                          422  rules->add_rule(rules, Data_Rule_Type());
                                                                                                                                                          +
                                                                                                                                                          423  return;
                                                                                                                                                          +
                                                                                                                                                          424 }
                                                                                                                                                          +
                                                                                                                                                          425 
                                                                                                                                                          426 
                                                                                                                                                          -
                                                                                                                                                          427  support_fun.set_rules(rules);
                                                                                                                                                          -
                                                                                                                                                          428  return;
                                                                                                                                                          -
                                                                                                                                                          429 
                                                                                                                                                          -
                                                                                                                                                          430 }
                                                                                                                                                          +
                                                                                                                                                          427 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          428 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: set_rules(
                                                                                                                                                          +
                                                                                                                                                          429  Rules<Array_Type,Data_Rule_Type> * rules_
                                                                                                                                                          +
                                                                                                                                                          430 ) {
                                                                                                                                                          431 
                                                                                                                                                          -
                                                                                                                                                          433 
                                                                                                                                                          -
                                                                                                                                                          434 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          435 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_rule_dyn(
                                                                                                                                                          -
                                                                                                                                                          436  Rule<Array_Type, Data_Rule_Dyn_Type> & rules_
                                                                                                                                                          -
                                                                                                                                                          437 ) {
                                                                                                                                                          -
                                                                                                                                                          438 
                                                                                                                                                          -
                                                                                                                                                          439  rules_dyn->add_rule(rules_, Data_Rule_Dyn_Type());
                                                                                                                                                          -
                                                                                                                                                          440  return;
                                                                                                                                                          +
                                                                                                                                                          432  if (delete_rules)
                                                                                                                                                          +
                                                                                                                                                          433  delete rules;
                                                                                                                                                          +
                                                                                                                                                          434 
                                                                                                                                                          +
                                                                                                                                                          435  this->rules = rules_;
                                                                                                                                                          +
                                                                                                                                                          436  this->delete_rules = false;
                                                                                                                                                          +
                                                                                                                                                          437 
                                                                                                                                                          +
                                                                                                                                                          438  support_fun.set_rules(rules);
                                                                                                                                                          +
                                                                                                                                                          439  return;
                                                                                                                                                          +
                                                                                                                                                          440 
                                                                                                                                                          441 }
                                                                                                                                                          442 
                                                                                                                                                          -
                                                                                                                                                          443 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          444 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_rule_dyn(
                                                                                                                                                          -
                                                                                                                                                          445  Rule_fun_type<Array_Type,Data_Rule_Dyn_Type> rule_fun_,
                                                                                                                                                          -
                                                                                                                                                          446  Data_Rule_Dyn_Type data_
                                                                                                                                                          -
                                                                                                                                                          447 ) {
                                                                                                                                                          -
                                                                                                                                                          448 
                                                                                                                                                          -
                                                                                                                                                          449  rules_dyn->add_rule(
                                                                                                                                                          -
                                                                                                                                                          450  rule_fun_,
                                                                                                                                                          -
                                                                                                                                                          451  data_
                                                                                                                                                          -
                                                                                                                                                          452  );
                                                                                                                                                          -
                                                                                                                                                          453 
                                                                                                                                                          -
                                                                                                                                                          454  return;
                                                                                                                                                          -
                                                                                                                                                          455 
                                                                                                                                                          -
                                                                                                                                                          456 }
                                                                                                                                                          -
                                                                                                                                                          457 
                                                                                                                                                          -
                                                                                                                                                          458 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          459 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: set_rules_dyn(
                                                                                                                                                          -
                                                                                                                                                          460  Rules<Array_Type,Data_Rule_Dyn_Type> * rules_
                                                                                                                                                          -
                                                                                                                                                          461 ) {
                                                                                                                                                          -
                                                                                                                                                          462 
                                                                                                                                                          -
                                                                                                                                                          463  if (delete_rules_dyn)
                                                                                                                                                          -
                                                                                                                                                          464  delete rules_dyn;
                                                                                                                                                          -
                                                                                                                                                          465 
                                                                                                                                                          -
                                                                                                                                                          466  this->rules_dyn = rules_;
                                                                                                                                                          -
                                                                                                                                                          467  this->delete_rules_dyn = false;
                                                                                                                                                          -
                                                                                                                                                          468  support_fun.set_rules_dyn(rules_dyn);
                                                                                                                                                          -
                                                                                                                                                          469  return;
                                                                                                                                                          -
                                                                                                                                                          470 
                                                                                                                                                          -
                                                                                                                                                          471 }
                                                                                                                                                          -
                                                                                                                                                          472 
                                                                                                                                                          -
                                                                                                                                                          474 
                                                                                                                                                          -
                                                                                                                                                          475 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          476 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_array(
                                                                                                                                                          -
                                                                                                                                                          477  const Array_Type & Array_,
                                                                                                                                                          -
                                                                                                                                                          478  bool force_new
                                                                                                                                                          -
                                                                                                                                                          479 ) {
                                                                                                                                                          -
                                                                                                                                                          480 
                                                                                                                                                          -
                                                                                                                                                          481  // Array counts (target statistics)
                                                                                                                                                          -
                                                                                                                                                          482  counter_fun.reset_array(&Array_);
                                                                                                                                                          -
                                                                                                                                                          483 
                                                                                                                                                          -
                                                                                                                                                          484  if (transform_model_fun)
                                                                                                                                                          -
                                                                                                                                                          485  {
                                                                                                                                                          -
                                                                                                                                                          486 
                                                                                                                                                          -
                                                                                                                                                          487  auto tmpcounts = counter_fun.count_all();
                                                                                                                                                          -
                                                                                                                                                          488  stats_target.emplace_back(
                                                                                                                                                          -
                                                                                                                                                          489  transform_model_fun(&tmpcounts[0u], tmpcounts.size())
                                                                                                                                                          -
                                                                                                                                                          490  );
                                                                                                                                                          -
                                                                                                                                                          491 
                                                                                                                                                          -
                                                                                                                                                          492  } else
                                                                                                                                                          -
                                                                                                                                                          493  stats_target.push_back(counter_fun.count_all());
                                                                                                                                                          -
                                                                                                                                                          494 
                                                                                                                                                          -
                                                                                                                                                          495  // If the data hasn't been analyzed earlier, then we need to compute
                                                                                                                                                          -
                                                                                                                                                          496  // the support
                                                                                                                                                          -
                                                                                                                                                          497  std::vector< double > key = counters->gen_hash(Array_);
                                                                                                                                                          -
                                                                                                                                                          498  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                                                                                          -
                                                                                                                                                          499  if (force_new | (locator == keys2support.end()))
                                                                                                                                                          -
                                                                                                                                                          500  {
                                                                                                                                                          -
                                                                                                                                                          501 
                                                                                                                                                          -
                                                                                                                                                          502  // Adding to the map
                                                                                                                                                          -
                                                                                                                                                          503  keys2support[key] = stats_support.size();
                                                                                                                                                          -
                                                                                                                                                          504  stats_support_n_arrays.push_back(1u); // How many elements now
                                                                                                                                                          -
                                                                                                                                                          505  arrays2support.push_back(stats_support.size()); // Map of the array id to the support
                                                                                                                                                          -
                                                                                                                                                          506 
                                                                                                                                                          -
                                                                                                                                                          507  // Computing support using the counters included in the model
                                                                                                                                                          -
                                                                                                                                                          508  support_fun.reset_array(Array_);
                                                                                                                                                          -
                                                                                                                                                          509 
                                                                                                                                                          -
                                                                                                                                                          512  if (with_pset)
                                                                                                                                                          -
                                                                                                                                                          513  {
                                                                                                                                                          -
                                                                                                                                                          514 
                                                                                                                                                          -
                                                                                                                                                          515  // Making space for storing the support
                                                                                                                                                          -
                                                                                                                                                          516  pset_arrays.resize(pset_arrays.size() + 1u);
                                                                                                                                                          -
                                                                                                                                                          517  pset_stats.resize(pset_stats.size() + 1u);
                                                                                                                                                          -
                                                                                                                                                          518  pset_probs.resize(pset_probs.size() + 1u);
                                                                                                                                                          -
                                                                                                                                                          519 
                                                                                                                                                          -
                                                                                                                                                          520  try
                                                                                                                                                          -
                                                                                                                                                          521  {
                                                                                                                                                          -
                                                                                                                                                          522 
                                                                                                                                                          -
                                                                                                                                                          523  support_fun.calc(
                                                                                                                                                          -
                                                                                                                                                          524  &(pset_arrays[pset_arrays.size() - 1u]),
                                                                                                                                                          -
                                                                                                                                                          525  &(pset_stats[pset_stats.size() - 1u])
                                                                                                                                                          -
                                                                                                                                                          526  );
                                                                                                                                                          -
                                                                                                                                                          527 
                                                                                                                                                          -
                                                                                                                                                          528  }
                                                                                                                                                          -
                                                                                                                                                          529  catch (const std::exception& e)
                                                                                                                                                          -
                                                                                                                                                          530  {
                                                                                                                                                          -
                                                                                                                                                          531 
                                                                                                                                                          -
                                                                                                                                                          532  printf_barry(
                                                                                                                                                          -
                                                                                                                                                          533  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                                                                                          -
                                                                                                                                                          534  );
                                                                                                                                                          -
                                                                                                                                                          535  printf_barry("with error %s\n", e.what());
                                                                                                                                                          -
                                                                                                                                                          536  printf_barry("Here is the array that generated the error.\n");
                                                                                                                                                          -
                                                                                                                                                          537  Array_.print();
                                                                                                                                                          -
                                                                                                                                                          538  throw std::logic_error("");
                                                                                                                                                          -
                                                                                                                                                          539 
                                                                                                                                                          -
                                                                                                                                                          540  }
                                                                                                                                                          -
                                                                                                                                                          541 
                                                                                                                                                          -
                                                                                                                                                          542  }
                                                                                                                                                          -
                                                                                                                                                          543  else
                                                                                                                                                          -
                                                                                                                                                          544  {
                                                                                                                                                          -
                                                                                                                                                          545  try
                                                                                                                                                          -
                                                                                                                                                          546  {
                                                                                                                                                          -
                                                                                                                                                          547 
                                                                                                                                                          -
                                                                                                                                                          548  support_fun.calc();
                                                                                                                                                          -
                                                                                                                                                          549 
                                                                                                                                                          -
                                                                                                                                                          550  }
                                                                                                                                                          -
                                                                                                                                                          551  catch (const std::exception& e)
                                                                                                                                                          -
                                                                                                                                                          552  {
                                                                                                                                                          -
                                                                                                                                                          553 
                                                                                                                                                          -
                                                                                                                                                          554  printf_barry(
                                                                                                                                                          -
                                                                                                                                                          555  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                                                                                          -
                                                                                                                                                          556  );
                                                                                                                                                          -
                                                                                                                                                          557  printf_barry("with error %s\n", e.what());
                                                                                                                                                          -
                                                                                                                                                          558  printf_barry("Here is the array that generated the error.\n");
                                                                                                                                                          -
                                                                                                                                                          559  Array_.print();
                                                                                                                                                          -
                                                                                                                                                          560  throw std::logic_error("");
                                                                                                                                                          -
                                                                                                                                                          561 
                                                                                                                                                          -
                                                                                                                                                          562  }
                                                                                                                                                          -
                                                                                                                                                          563  }
                                                                                                                                                          -
                                                                                                                                                          564 
                                                                                                                                                          -
                                                                                                                                                          565  if (transform_model_fun)
                                                                                                                                                          -
                                                                                                                                                          566  {
                                                                                                                                                          -
                                                                                                                                                          567  auto tmpsupport = support_fun.get_counts();
                                                                                                                                                          -
                                                                                                                                                          568  size_t k = counter_fun.size();
                                                                                                                                                          -
                                                                                                                                                          569  size_t n = tmpsupport.size() / (k + 1);
                                                                                                                                                          -
                                                                                                                                                          570 
                                                                                                                                                          -
                                                                                                                                                          571  std::vector< double > s_new(0u);
                                                                                                                                                          -
                                                                                                                                                          572  s_new.reserve(tmpsupport.size());
                                                                                                                                                          -
                                                                                                                                                          573 
                                                                                                                                                          -
                                                                                                                                                          574  for (size_t i = 0u; i < n; ++i)
                                                                                                                                                          -
                                                                                                                                                          575  {
                                                                                                                                                          +
                                                                                                                                                          444 
                                                                                                                                                          +
                                                                                                                                                          445 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          446 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_rule_dyn(
                                                                                                                                                          +
                                                                                                                                                          447  Rule<Array_Type, Data_Rule_Dyn_Type> & rules_
                                                                                                                                                          +
                                                                                                                                                          448 ) {
                                                                                                                                                          +
                                                                                                                                                          449 
                                                                                                                                                          +
                                                                                                                                                          450  rules_dyn->add_rule(rules_, Data_Rule_Dyn_Type());
                                                                                                                                                          +
                                                                                                                                                          451  return;
                                                                                                                                                          +
                                                                                                                                                          452 }
                                                                                                                                                          +
                                                                                                                                                          453 
                                                                                                                                                          +
                                                                                                                                                          454 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          455 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_rule_dyn(
                                                                                                                                                          +
                                                                                                                                                          456  Rule_fun_type<Array_Type,Data_Rule_Dyn_Type> rule_fun_,
                                                                                                                                                          +
                                                                                                                                                          457  Data_Rule_Dyn_Type data_
                                                                                                                                                          +
                                                                                                                                                          458 ) {
                                                                                                                                                          +
                                                                                                                                                          459 
                                                                                                                                                          +
                                                                                                                                                          460  rules_dyn->add_rule(
                                                                                                                                                          +
                                                                                                                                                          461  rule_fun_,
                                                                                                                                                          +
                                                                                                                                                          462  data_
                                                                                                                                                          +
                                                                                                                                                          463  );
                                                                                                                                                          +
                                                                                                                                                          464 
                                                                                                                                                          +
                                                                                                                                                          465  return;
                                                                                                                                                          +
                                                                                                                                                          466 
                                                                                                                                                          +
                                                                                                                                                          467 }
                                                                                                                                                          +
                                                                                                                                                          468 
                                                                                                                                                          +
                                                                                                                                                          469 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          470 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: set_rules_dyn(
                                                                                                                                                          +
                                                                                                                                                          471  Rules<Array_Type,Data_Rule_Dyn_Type> * rules_
                                                                                                                                                          +
                                                                                                                                                          472 ) {
                                                                                                                                                          +
                                                                                                                                                          473 
                                                                                                                                                          +
                                                                                                                                                          474  if (delete_rules_dyn)
                                                                                                                                                          +
                                                                                                                                                          475  delete rules_dyn;
                                                                                                                                                          +
                                                                                                                                                          476 
                                                                                                                                                          +
                                                                                                                                                          477  this->rules_dyn = rules_;
                                                                                                                                                          +
                                                                                                                                                          478  this->delete_rules_dyn = false;
                                                                                                                                                          +
                                                                                                                                                          479  support_fun.set_rules_dyn(rules_dyn);
                                                                                                                                                          +
                                                                                                                                                          480  return;
                                                                                                                                                          +
                                                                                                                                                          481 
                                                                                                                                                          +
                                                                                                                                                          482 }
                                                                                                                                                          +
                                                                                                                                                          483 
                                                                                                                                                          +
                                                                                                                                                          485 
                                                                                                                                                          +
                                                                                                                                                          486 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          487 inline size_t
                                                                                                                                                          +
                                                                                                                                                          488 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::add_array(
                                                                                                                                                          +
                                                                                                                                                          489  const Array_Type & Array_,
                                                                                                                                                          +
                                                                                                                                                          490  bool force_new
                                                                                                                                                          +
                                                                                                                                                          491 ) {
                                                                                                                                                          +
                                                                                                                                                          492 
                                                                                                                                                          +
                                                                                                                                                          493  // Array counts (target statistics)
                                                                                                                                                          +
                                                                                                                                                          494  counter_fun.reset_array(&Array_);
                                                                                                                                                          +
                                                                                                                                                          495 
                                                                                                                                                          +
                                                                                                                                                          496  if (transform_model_fun)
                                                                                                                                                          +
                                                                                                                                                          497  {
                                                                                                                                                          +
                                                                                                                                                          498 
                                                                                                                                                          +
                                                                                                                                                          499  auto tmpcounts = counter_fun.count_all();
                                                                                                                                                          +
                                                                                                                                                          500  stats_target.emplace_back(
                                                                                                                                                          +
                                                                                                                                                          501  transform_model_fun(&tmpcounts[0u], tmpcounts.size())
                                                                                                                                                          +
                                                                                                                                                          502  );
                                                                                                                                                          +
                                                                                                                                                          503 
                                                                                                                                                          +
                                                                                                                                                          504  } else
                                                                                                                                                          +
                                                                                                                                                          505  stats_target.push_back(counter_fun.count_all());
                                                                                                                                                          +
                                                                                                                                                          506 
                                                                                                                                                          +
                                                                                                                                                          507  // If the data hasn't been analyzed earlier, then we need to compute
                                                                                                                                                          +
                                                                                                                                                          508  // the support
                                                                                                                                                          +
                                                                                                                                                          509  std::vector< double > key = counters->gen_hash(Array_);
                                                                                                                                                          +
                                                                                                                                                          510  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                                                                                          +
                                                                                                                                                          511  if (force_new | (locator == keys2support.end()))
                                                                                                                                                          +
                                                                                                                                                          512  {
                                                                                                                                                          +
                                                                                                                                                          513 
                                                                                                                                                          +
                                                                                                                                                          514  // Current size of the support stats
                                                                                                                                                          +
                                                                                                                                                          515  size_t stats_support_size = stats_support.size();
                                                                                                                                                          +
                                                                                                                                                          516 
                                                                                                                                                          +
                                                                                                                                                          517  // Adding to the map
                                                                                                                                                          +
                                                                                                                                                          518  keys2support[key] = stats_support_sizes.size();
                                                                                                                                                          +
                                                                                                                                                          519  stats_support_n_arrays.push_back(1u); // How many elements now
                                                                                                                                                          +
                                                                                                                                                          520  arrays2support.push_back(stats_support_sizes.size()); // Map of the array id to the support
                                                                                                                                                          +
                                                                                                                                                          521 
                                                                                                                                                          +
                                                                                                                                                          522  // Computing support using the counters included in the model
                                                                                                                                                          +
                                                                                                                                                          523  support_fun.reset_array(Array_);
                                                                                                                                                          +
                                                                                                                                                          524 
                                                                                                                                                          +
                                                                                                                                                          527  if (with_pset)
                                                                                                                                                          +
                                                                                                                                                          528  {
                                                                                                                                                          +
                                                                                                                                                          529 
                                                                                                                                                          +
                                                                                                                                                          530  // Making space for storing the support
                                                                                                                                                          +
                                                                                                                                                          531  pset_arrays.resize(pset_arrays.size() + 1u);
                                                                                                                                                          +
                                                                                                                                                          532  pset_stats.resize(pset_stats.size() + 1u);
                                                                                                                                                          +
                                                                                                                                                          533  pset_probs.resize(pset_probs.size() + 1u);
                                                                                                                                                          +
                                                                                                                                                          534 
                                                                                                                                                          +
                                                                                                                                                          535  try
                                                                                                                                                          +
                                                                                                                                                          536  {
                                                                                                                                                          +
                                                                                                                                                          537 
                                                                                                                                                          +
                                                                                                                                                          538  support_fun.calc(
                                                                                                                                                          +
                                                                                                                                                          539  &(pset_arrays[pset_arrays.size() - 1u]),
                                                                                                                                                          +
                                                                                                                                                          540  &(pset_stats[pset_stats.size() - 1u])
                                                                                                                                                          +
                                                                                                                                                          541  );
                                                                                                                                                          +
                                                                                                                                                          542 
                                                                                                                                                          +
                                                                                                                                                          543  }
                                                                                                                                                          +
                                                                                                                                                          544  catch (const std::exception& e)
                                                                                                                                                          +
                                                                                                                                                          545  {
                                                                                                                                                          +
                                                                                                                                                          546 
                                                                                                                                                          +
                                                                                                                                                          547  printf_barry(
                                                                                                                                                          +
                                                                                                                                                          548  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                                                                                          +
                                                                                                                                                          549  );
                                                                                                                                                          +
                                                                                                                                                          550  printf_barry("with error %s\n", e.what());
                                                                                                                                                          +
                                                                                                                                                          551  printf_barry("Here is the array that generated the error.\n");
                                                                                                                                                          +
                                                                                                                                                          552  Array_.print();
                                                                                                                                                          +
                                                                                                                                                          553  throw std::logic_error("");
                                                                                                                                                          +
                                                                                                                                                          554 
                                                                                                                                                          +
                                                                                                                                                          555  }
                                                                                                                                                          +
                                                                                                                                                          556 
                                                                                                                                                          +
                                                                                                                                                          557  }
                                                                                                                                                          +
                                                                                                                                                          558  else
                                                                                                                                                          +
                                                                                                                                                          559  {
                                                                                                                                                          +
                                                                                                                                                          560  try
                                                                                                                                                          +
                                                                                                                                                          561  {
                                                                                                                                                          +
                                                                                                                                                          562 
                                                                                                                                                          +
                                                                                                                                                          563  support_fun.calc();
                                                                                                                                                          +
                                                                                                                                                          564 
                                                                                                                                                          +
                                                                                                                                                          565  }
                                                                                                                                                          +
                                                                                                                                                          566  catch (const std::exception& e)
                                                                                                                                                          +
                                                                                                                                                          567  {
                                                                                                                                                          +
                                                                                                                                                          568 
                                                                                                                                                          +
                                                                                                                                                          569  printf_barry(
                                                                                                                                                          +
                                                                                                                                                          570  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                                                                                          +
                                                                                                                                                          571  );
                                                                                                                                                          +
                                                                                                                                                          572  printf_barry("with error %s\n", e.what());
                                                                                                                                                          +
                                                                                                                                                          573  printf_barry("Here is the array that generated the error.\n");
                                                                                                                                                          +
                                                                                                                                                          574  Array_.print();
                                                                                                                                                          +
                                                                                                                                                          575  throw std::logic_error("");
                                                                                                                                                          576 
                                                                                                                                                          -
                                                                                                                                                          577  // Appending size
                                                                                                                                                          -
                                                                                                                                                          578  s_new.push_back(tmpsupport[i * (k + 1u)]);
                                                                                                                                                          -
                                                                                                                                                          579 
                                                                                                                                                          -
                                                                                                                                                          580  // Applying transformation and adding to the new set
                                                                                                                                                          -
                                                                                                                                                          581  auto res = transform_model_fun(&tmpsupport[i * (k + 1u) + 1u], k);
                                                                                                                                                          -
                                                                                                                                                          582  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                                                                                          -
                                                                                                                                                          583 
                                                                                                                                                          -
                                                                                                                                                          584  }
                                                                                                                                                          +
                                                                                                                                                          577  }
                                                                                                                                                          +
                                                                                                                                                          578  }
                                                                                                                                                          +
                                                                                                                                                          579 
                                                                                                                                                          +
                                                                                                                                                          580  if (transform_model_fun)
                                                                                                                                                          +
                                                                                                                                                          581  {
                                                                                                                                                          +
                                                                                                                                                          582  auto tmpsupport = support_fun.get_counts();
                                                                                                                                                          +
                                                                                                                                                          583  size_t k = counter_fun.size();
                                                                                                                                                          +
                                                                                                                                                          584  size_t n = tmpsupport.size() / (k + 1);
                                                                                                                                                          585 
                                                                                                                                                          -
                                                                                                                                                          586  stats_support.push_back(s_new);
                                                                                                                                                          -
                                                                                                                                                          587 
                                                                                                                                                          -
                                                                                                                                                          588  } else
                                                                                                                                                          -
                                                                                                                                                          589  stats_support.push_back(support_fun.get_counts());
                                                                                                                                                          -
                                                                                                                                                          590 
                                                                                                                                                          -
                                                                                                                                                          591  // Making room for the previous parameters. This will be used to check if
                                                                                                                                                          -
                                                                                                                                                          592  // the normalizing constant has been updated or not.
                                                                                                                                                          -
                                                                                                                                                          593  params_last.push_back(stats_target[0u]);
                                                                                                                                                          -
                                                                                                                                                          594  normalizing_constants.push_back(0.0);
                                                                                                                                                          -
                                                                                                                                                          595  first_calc_done.push_back(false);
                                                                                                                                                          -
                                                                                                                                                          596 
                                                                                                                                                          -
                                                                                                                                                          597  return arrays2support.size() - 1u;
                                                                                                                                                          -
                                                                                                                                                          598 
                                                                                                                                                          -
                                                                                                                                                          599  }
                                                                                                                                                          -
                                                                                                                                                          600 
                                                                                                                                                          -
                                                                                                                                                          601  // Increasing the number of arrays in that stat
                                                                                                                                                          -
                                                                                                                                                          602  ++stats_support_n_arrays[locator->second];
                                                                                                                                                          -
                                                                                                                                                          603 
                                                                                                                                                          -
                                                                                                                                                          604  // Adding the corresponding map
                                                                                                                                                          -
                                                                                                                                                          605  arrays2support.push_back(locator->second);
                                                                                                                                                          -
                                                                                                                                                          606 
                                                                                                                                                          -
                                                                                                                                                          607  return arrays2support.size() - 1u;
                                                                                                                                                          -
                                                                                                                                                          608 
                                                                                                                                                          -
                                                                                                                                                          609 }
                                                                                                                                                          -
                                                                                                                                                          610 
                                                                                                                                                          -
                                                                                                                                                          611 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          612 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                                                                                          -
                                                                                                                                                          613  const std::vector<double> & params,
                                                                                                                                                          -
                                                                                                                                                          614  const size_t & i,
                                                                                                                                                          -
                                                                                                                                                          615  bool as_log,
                                                                                                                                                          -
                                                                                                                                                          616  bool no_update_normconst
                                                                                                                                                          -
                                                                                                                                                          617 ) {
                                                                                                                                                          -
                                                                                                                                                          618 
                                                                                                                                                          -
                                                                                                                                                          619  // Checking if the index exists
                                                                                                                                                          -
                                                                                                                                                          620  if (i >= arrays2support.size())
                                                                                                                                                          -
                                                                                                                                                          621  throw std::range_error("The requested support is out of range");
                                                                                                                                                          -
                                                                                                                                                          622 
                                                                                                                                                          -
                                                                                                                                                          623  size_t idx = arrays2support[i];
                                                                                                                                                          -
                                                                                                                                                          624 
                                                                                                                                                          -
                                                                                                                                                          625  // Checking if this actually has a change of happening
                                                                                                                                                          -
                                                                                                                                                          626  if (this->stats_support[idx].size() == 0u)
                                                                                                                                                          -
                                                                                                                                                          627  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                                                                                          -
                                                                                                                                                          628 
                                                                                                                                                          -
                                                                                                                                                          629  // Checking if we have updated the normalizing constant or not
                                                                                                                                                          -
                                                                                                                                                          630  if (!no_update_normconst && (!first_calc_done[idx] || !vec_equal_approx(params, params_last[idx])))
                                                                                                                                                          -
                                                                                                                                                          631  {
                                                                                                                                                          -
                                                                                                                                                          632 
                                                                                                                                                          -
                                                                                                                                                          633  first_calc_done[idx] = true;
                                                                                                                                                          +
                                                                                                                                                          586  std::vector< double > s_new(0u);
                                                                                                                                                          +
                                                                                                                                                          587  s_new.reserve(tmpsupport.size());
                                                                                                                                                          +
                                                                                                                                                          588 
                                                                                                                                                          +
                                                                                                                                                          589  for (size_t i = 0u; i < n; ++i)
                                                                                                                                                          +
                                                                                                                                                          590  {
                                                                                                                                                          +
                                                                                                                                                          591 
                                                                                                                                                          +
                                                                                                                                                          592  // Appending size
                                                                                                                                                          +
                                                                                                                                                          593  s_new.push_back(tmpsupport[i * (k + 1u)]);
                                                                                                                                                          +
                                                                                                                                                          594 
                                                                                                                                                          +
                                                                                                                                                          595  // Applying transformation and adding to the new set
                                                                                                                                                          +
                                                                                                                                                          596  auto res = transform_model_fun(&tmpsupport[i * (k + 1u) + 1u], k);
                                                                                                                                                          +
                                                                                                                                                          597  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                                                                                          +
                                                                                                                                                          598 
                                                                                                                                                          +
                                                                                                                                                          599  }
                                                                                                                                                          +
                                                                                                                                                          600 
                                                                                                                                                          +
                                                                                                                                                          601  for (auto & s : s_new)
                                                                                                                                                          +
                                                                                                                                                          602  stats_support.push_back(s);
                                                                                                                                                          +
                                                                                                                                                          603 
                                                                                                                                                          +
                                                                                                                                                          604 
                                                                                                                                                          +
                                                                                                                                                          605  } else {
                                                                                                                                                          +
                                                                                                                                                          606  for (const auto & s: support_fun.get_counts())
                                                                                                                                                          +
                                                                                                                                                          607  stats_support.push_back(s);
                                                                                                                                                          +
                                                                                                                                                          608  }
                                                                                                                                                          +
                                                                                                                                                          609 
                                                                                                                                                          +
                                                                                                                                                          610  // Making room for the previous parameters. This will be used to check if
                                                                                                                                                          +
                                                                                                                                                          611  // the normalizing constant has been updated or not.
                                                                                                                                                          +
                                                                                                                                                          612  params_last.push_back(stats_target[0u]);
                                                                                                                                                          +
                                                                                                                                                          613  normalizing_constants.push_back(0.0);
                                                                                                                                                          +
                                                                                                                                                          614  first_calc_done.push_back(false);
                                                                                                                                                          +
                                                                                                                                                          615 
                                                                                                                                                          +
                                                                                                                                                          616  // Incrementing the size of the support set
                                                                                                                                                          +
                                                                                                                                                          617  if (stats_support_sizes.size() == 0u)
                                                                                                                                                          +
                                                                                                                                                          618  {
                                                                                                                                                          +
                                                                                                                                                          619  stats_support_sizes_acc.push_back(0u);
                                                                                                                                                          +
                                                                                                                                                          620  } else {
                                                                                                                                                          +
                                                                                                                                                          621  stats_support_sizes_acc.push_back(
                                                                                                                                                          +
                                                                                                                                                          622  stats_support_sizes.back() +
                                                                                                                                                          +
                                                                                                                                                          623  stats_support_sizes_acc.back()
                                                                                                                                                          +
                                                                                                                                                          624  );
                                                                                                                                                          +
                                                                                                                                                          625  }
                                                                                                                                                          +
                                                                                                                                                          626 
                                                                                                                                                          +
                                                                                                                                                          627 
                                                                                                                                                          +
                                                                                                                                                          628  stats_support_sizes.push_back(
                                                                                                                                                          +
                                                                                                                                                          629 
                                                                                                                                                          +
                                                                                                                                                          630  (stats_support.size() - stats_support_size)/
                                                                                                                                                          +
                                                                                                                                                          631  (counter_fun.size() + 1u)
                                                                                                                                                          +
                                                                                                                                                          632 
                                                                                                                                                          +
                                                                                                                                                          633  );
                                                                                                                                                          634 
                                                                                                                                                          -
                                                                                                                                                          635  size_t k = params.size() + 1u;
                                                                                                                                                          -
                                                                                                                                                          636  size_t n = stats_support[idx].size() / k;
                                                                                                                                                          -
                                                                                                                                                          637 
                                                                                                                                                          -
                                                                                                                                                          638  normalizing_constants[idx] = update_normalizing_constant(
                                                                                                                                                          -
                                                                                                                                                          639  params, &stats_support[idx][0u], k, n
                                                                                                                                                          -
                                                                                                                                                          640  );
                                                                                                                                                          -
                                                                                                                                                          641 
                                                                                                                                                          -
                                                                                                                                                          642  params_last[idx] = params;
                                                                                                                                                          -
                                                                                                                                                          643 
                                                                                                                                                          -
                                                                                                                                                          644  }
                                                                                                                                                          -
                                                                                                                                                          645 
                                                                                                                                                          -
                                                                                                                                                          646  return likelihood_(
                                                                                                                                                          -
                                                                                                                                                          647  &stats_target[i],
                                                                                                                                                          -
                                                                                                                                                          648  params,
                                                                                                                                                          -
                                                                                                                                                          649  normalizing_constants[idx],
                                                                                                                                                          -
                                                                                                                                                          650  nterms(),
                                                                                                                                                          -
                                                                                                                                                          651  as_log
                                                                                                                                                          -
                                                                                                                                                          652  );
                                                                                                                                                          -
                                                                                                                                                          653 
                                                                                                                                                          -
                                                                                                                                                          654 }
                                                                                                                                                          -
                                                                                                                                                          655 
                                                                                                                                                          -
                                                                                                                                                          656 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          657 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                                                                                          -
                                                                                                                                                          658  const std::vector<double> & params,
                                                                                                                                                          -
                                                                                                                                                          659  const Array_Type & Array_,
                                                                                                                                                          -
                                                                                                                                                          660  int i,
                                                                                                                                                          -
                                                                                                                                                          661  bool as_log,
                                                                                                                                                          -
                                                                                                                                                          662  bool no_update_normconst
                                                                                                                                                          -
                                                                                                                                                          663 ) {
                                                                                                                                                          -
                                                                                                                                                          664 
                                                                                                                                                          -
                                                                                                                                                          665  // Key of the support set to use
                                                                                                                                                          -
                                                                                                                                                          666  int loc;
                                                                                                                                                          -
                                                                                                                                                          667 
                                                                                                                                                          -
                                                                                                                                                          668  if (i < 0)
                                                                                                                                                          +
                                                                                                                                                          635  return arrays2support.size() - 1u;
                                                                                                                                                          +
                                                                                                                                                          636 
                                                                                                                                                          +
                                                                                                                                                          637  }
                                                                                                                                                          +
                                                                                                                                                          638 
                                                                                                                                                          +
                                                                                                                                                          639  // Increasing the number of arrays in that stat
                                                                                                                                                          +
                                                                                                                                                          640  ++stats_support_n_arrays[locator->second];
                                                                                                                                                          +
                                                                                                                                                          641 
                                                                                                                                                          +
                                                                                                                                                          642  // Adding the corresponding map
                                                                                                                                                          +
                                                                                                                                                          643  arrays2support.push_back(locator->second);
                                                                                                                                                          +
                                                                                                                                                          644 
                                                                                                                                                          +
                                                                                                                                                          645  return arrays2support.size() - 1u;
                                                                                                                                                          +
                                                                                                                                                          646 
                                                                                                                                                          +
                                                                                                                                                          647 }
                                                                                                                                                          +
                                                                                                                                                          648 
                                                                                                                                                          +
                                                                                                                                                          649 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          650 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                                                                                          +
                                                                                                                                                          651  const std::vector<double> & params,
                                                                                                                                                          +
                                                                                                                                                          652  const size_t & i,
                                                                                                                                                          +
                                                                                                                                                          653  bool as_log,
                                                                                                                                                          +
                                                                                                                                                          654  bool no_update_normconst
                                                                                                                                                          +
                                                                                                                                                          655 ) {
                                                                                                                                                          +
                                                                                                                                                          656 
                                                                                                                                                          +
                                                                                                                                                          657  // Checking if the index exists
                                                                                                                                                          +
                                                                                                                                                          658  if (i >= arrays2support.size())
                                                                                                                                                          +
                                                                                                                                                          659  throw std::range_error("The requested support is out of range");
                                                                                                                                                          +
                                                                                                                                                          660 
                                                                                                                                                          +
                                                                                                                                                          661  size_t idx = arrays2support[i];
                                                                                                                                                          +
                                                                                                                                                          662 
                                                                                                                                                          +
                                                                                                                                                          663  // Checking if this actually has a change of happening
                                                                                                                                                          +
                                                                                                                                                          664  if (this->stats_support_sizes[idx] == 0u)
                                                                                                                                                          +
                                                                                                                                                          665  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                                                                                          +
                                                                                                                                                          666 
                                                                                                                                                          +
                                                                                                                                                          667  // Checking if we have updated the normalizing constant or not
                                                                                                                                                          +
                                                                                                                                                          668  if (!no_update_normconst && (!first_calc_done[idx] || !vec_equal_approx(params, params_last[idx])))
                                                                                                                                                          669  {
                                                                                                                                                          -
                                                                                                                                                          670 
                                                                                                                                                          -
                                                                                                                                                          671  std::vector< double > key = counters->gen_hash(Array_);
                                                                                                                                                          -
                                                                                                                                                          672  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                                                                                          -
                                                                                                                                                          673  if (locator == keys2support.end())
                                                                                                                                                          -
                                                                                                                                                          674  throw std::range_error(
                                                                                                                                                          -
                                                                                                                                                          675  "This type of array has not been included in the model."
                                                                                                                                                          -
                                                                                                                                                          676  );
                                                                                                                                                          -
                                                                                                                                                          677 
                                                                                                                                                          -
                                                                                                                                                          678  loc = locator->second;
                                                                                                                                                          -
                                                                                                                                                          679 
                                                                                                                                                          -
                                                                                                                                                          680  }
                                                                                                                                                          -
                                                                                                                                                          681  else
                                                                                                                                                          -
                                                                                                                                                          682  {
                                                                                                                                                          -
                                                                                                                                                          683 
                                                                                                                                                          -
                                                                                                                                                          684  if (static_cast<size_t>(i) >= arrays2support.size())
                                                                                                                                                          -
                                                                                                                                                          685  throw std::range_error(
                                                                                                                                                          -
                                                                                                                                                          686  "This type of array has not been included in the model."
                                                                                                                                                          -
                                                                                                                                                          687  );
                                                                                                                                                          -
                                                                                                                                                          688 
                                                                                                                                                          -
                                                                                                                                                          689  loc = arrays2support[i];
                                                                                                                                                          -
                                                                                                                                                          690 
                                                                                                                                                          -
                                                                                                                                                          691  }
                                                                                                                                                          -
                                                                                                                                                          692 
                                                                                                                                                          -
                                                                                                                                                          693  // Checking if this actually has a change of happening
                                                                                                                                                          -
                                                                                                                                                          694  if (this->stats_support[loc].size() == 0u)
                                                                                                                                                          -
                                                                                                                                                          695  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                                                                                          -
                                                                                                                                                          696 
                                                                                                                                                          -
                                                                                                                                                          697  // Counting stats_target
                                                                                                                                                          -
                                                                                                                                                          698  StatsCounter< Array_Type, Data_Counter_Type> tmpstats(&Array_);
                                                                                                                                                          -
                                                                                                                                                          699 
                                                                                                                                                          -
                                                                                                                                                          700  tmpstats.set_counters(this->counters);
                                                                                                                                                          -
                                                                                                                                                          701 
                                                                                                                                                          -
                                                                                                                                                          702  std::vector< double > target_ = tmpstats.count_all();
                                                                                                                                                          -
                                                                                                                                                          703 
                                                                                                                                                          -
                                                                                                                                                          704  if (transform_model_fun)
                                                                                                                                                          -
                                                                                                                                                          705  target_ = transform_model_fun(&target_[0u], target_.size());
                                                                                                                                                          -
                                                                                                                                                          706 
                                                                                                                                                          -
                                                                                                                                                          707  // Checking if we have updated the normalizing constant or not
                                                                                                                                                          -
                                                                                                                                                          708  if (!no_update_normconst && (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc])) )
                                                                                                                                                          +
                                                                                                                                                          670 
                                                                                                                                                          +
                                                                                                                                                          671  first_calc_done[idx] = true;
                                                                                                                                                          +
                                                                                                                                                          672 
                                                                                                                                                          +
                                                                                                                                                          673  size_t k = params.size() + 1u;
                                                                                                                                                          +
                                                                                                                                                          674  size_t n = stats_support_sizes[idx];
                                                                                                                                                          +
                                                                                                                                                          675 
                                                                                                                                                          +
                                                                                                                                                          676  normalizing_constants[idx] = update_normalizing_constant(
                                                                                                                                                          +
                                                                                                                                                          677  params, &stats_support[
                                                                                                                                                          +
                                                                                                                                                          678  stats_support_sizes_acc[idx] * k
                                                                                                                                                          +
                                                                                                                                                          679  ], k, n
                                                                                                                                                          +
                                                                                                                                                          680  );
                                                                                                                                                          +
                                                                                                                                                          681 
                                                                                                                                                          +
                                                                                                                                                          682  params_last[idx] = params;
                                                                                                                                                          +
                                                                                                                                                          683 
                                                                                                                                                          +
                                                                                                                                                          684  }
                                                                                                                                                          +
                                                                                                                                                          685 
                                                                                                                                                          +
                                                                                                                                                          686  return likelihood_(
                                                                                                                                                          +
                                                                                                                                                          687  &stats_target[i],
                                                                                                                                                          +
                                                                                                                                                          688  params,
                                                                                                                                                          +
                                                                                                                                                          689  normalizing_constants[idx],
                                                                                                                                                          +
                                                                                                                                                          690  nterms(),
                                                                                                                                                          +
                                                                                                                                                          691  as_log
                                                                                                                                                          +
                                                                                                                                                          692  );
                                                                                                                                                          +
                                                                                                                                                          693 
                                                                                                                                                          +
                                                                                                                                                          694 }
                                                                                                                                                          +
                                                                                                                                                          695 
                                                                                                                                                          +
                                                                                                                                                          696 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          697 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                                                                                          +
                                                                                                                                                          698  const std::vector<double> & params,
                                                                                                                                                          +
                                                                                                                                                          699  const Array_Type & Array_,
                                                                                                                                                          +
                                                                                                                                                          700  int i,
                                                                                                                                                          +
                                                                                                                                                          701  bool as_log,
                                                                                                                                                          +
                                                                                                                                                          702  bool no_update_normconst
                                                                                                                                                          +
                                                                                                                                                          703 ) {
                                                                                                                                                          +
                                                                                                                                                          704 
                                                                                                                                                          +
                                                                                                                                                          705  // Key of the support set to use
                                                                                                                                                          +
                                                                                                                                                          706  int loc;
                                                                                                                                                          +
                                                                                                                                                          707 
                                                                                                                                                          +
                                                                                                                                                          708  if (i < 0)
                                                                                                                                                          709  {
                                                                                                                                                          -
                                                                                                                                                          710 
                                                                                                                                                          -
                                                                                                                                                          711  first_calc_done[loc] = true;
                                                                                                                                                          -
                                                                                                                                                          712 
                                                                                                                                                          -
                                                                                                                                                          713  size_t k = params.size() + 1u;
                                                                                                                                                          -
                                                                                                                                                          714  size_t n = stats_support[loc].size() / k;
                                                                                                                                                          -
                                                                                                                                                          715 
                                                                                                                                                          -
                                                                                                                                                          716  normalizing_constants[loc] = update_normalizing_constant(
                                                                                                                                                          -
                                                                                                                                                          717  params, &stats_support[loc][0u], k, n
                                                                                                                                                          -
                                                                                                                                                          718  );
                                                                                                                                                          -
                                                                                                                                                          719 
                                                                                                                                                          -
                                                                                                                                                          720  params_last[loc] = params;
                                                                                                                                                          -
                                                                                                                                                          721 
                                                                                                                                                          -
                                                                                                                                                          722  }
                                                                                                                                                          +
                                                                                                                                                          710 
                                                                                                                                                          +
                                                                                                                                                          711  std::vector< double > key = counters->gen_hash(Array_);
                                                                                                                                                          +
                                                                                                                                                          712  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                                                                                          +
                                                                                                                                                          713  if (locator == keys2support.end())
                                                                                                                                                          +
                                                                                                                                                          714  throw std::range_error(
                                                                                                                                                          +
                                                                                                                                                          715  "This type of array has not been included in the model."
                                                                                                                                                          +
                                                                                                                                                          716  );
                                                                                                                                                          +
                                                                                                                                                          717 
                                                                                                                                                          +
                                                                                                                                                          718  loc = locator->second;
                                                                                                                                                          +
                                                                                                                                                          719 
                                                                                                                                                          +
                                                                                                                                                          720  }
                                                                                                                                                          +
                                                                                                                                                          721  else
                                                                                                                                                          +
                                                                                                                                                          722  {
                                                                                                                                                          723 
                                                                                                                                                          -
                                                                                                                                                          724  // Checking if passes the rules
                                                                                                                                                          -
                                                                                                                                                          725  if (!support_fun.eval_rules_dyn(target_, 0u, 0u))
                                                                                                                                                          -
                                                                                                                                                          726  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                                                                                          -
                                                                                                                                                          727 
                                                                                                                                                          -
                                                                                                                                                          728  return likelihood_(
                                                                                                                                                          -
                                                                                                                                                          729  &target_[0u],
                                                                                                                                                          -
                                                                                                                                                          730  params,
                                                                                                                                                          -
                                                                                                                                                          731  normalizing_constants[loc],
                                                                                                                                                          -
                                                                                                                                                          732  nterms(),
                                                                                                                                                          -
                                                                                                                                                          733  as_log
                                                                                                                                                          -
                                                                                                                                                          734  );
                                                                                                                                                          -
                                                                                                                                                          735 
                                                                                                                                                          -
                                                                                                                                                          736 }
                                                                                                                                                          -
                                                                                                                                                          737 
                                                                                                                                                          -
                                                                                                                                                          738 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          739 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                                                                                          -
                                                                                                                                                          740  const std::vector<double> & params,
                                                                                                                                                          -
                                                                                                                                                          741  const std::vector<double> & target_,
                                                                                                                                                          -
                                                                                                                                                          742  const size_t & i,
                                                                                                                                                          -
                                                                                                                                                          743  bool as_log,
                                                                                                                                                          -
                                                                                                                                                          744  bool no_update_normconst
                                                                                                                                                          -
                                                                                                                                                          745 ) {
                                                                                                                                                          -
                                                                                                                                                          746 
                                                                                                                                                          -
                                                                                                                                                          747  // Checking if the index exists
                                                                                                                                                          -
                                                                                                                                                          748  if (i >= arrays2support.size())
                                                                                                                                                          -
                                                                                                                                                          749  throw std::range_error("The requested support is out of range");
                                                                                                                                                          -
                                                                                                                                                          750 
                                                                                                                                                          -
                                                                                                                                                          751  size_t loc = arrays2support[i];
                                                                                                                                                          +
                                                                                                                                                          724  if (static_cast<size_t>(i) >= arrays2support.size())
                                                                                                                                                          +
                                                                                                                                                          725  throw std::range_error(
                                                                                                                                                          +
                                                                                                                                                          726  "This type of array has not been included in the model."
                                                                                                                                                          +
                                                                                                                                                          727  );
                                                                                                                                                          +
                                                                                                                                                          728 
                                                                                                                                                          +
                                                                                                                                                          729  loc = arrays2support[i];
                                                                                                                                                          +
                                                                                                                                                          730 
                                                                                                                                                          +
                                                                                                                                                          731  }
                                                                                                                                                          +
                                                                                                                                                          732 
                                                                                                                                                          +
                                                                                                                                                          733  // Checking if this actually has a change of happening
                                                                                                                                                          +
                                                                                                                                                          734  if (this->stats_support_sizes[loc] == 0u)
                                                                                                                                                          +
                                                                                                                                                          735  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                                                                                          +
                                                                                                                                                          736 
                                                                                                                                                          +
                                                                                                                                                          737  // Counting stats_target
                                                                                                                                                          +
                                                                                                                                                          738  StatsCounter< Array_Type, Data_Counter_Type> tmpstats(&Array_);
                                                                                                                                                          +
                                                                                                                                                          739 
                                                                                                                                                          +
                                                                                                                                                          740  tmpstats.set_counters(this->counters);
                                                                                                                                                          +
                                                                                                                                                          741 
                                                                                                                                                          +
                                                                                                                                                          742  std::vector< double > target_ = tmpstats.count_all();
                                                                                                                                                          +
                                                                                                                                                          743 
                                                                                                                                                          +
                                                                                                                                                          744  if (transform_model_fun)
                                                                                                                                                          +
                                                                                                                                                          745  target_ = transform_model_fun(&target_[0u], target_.size());
                                                                                                                                                          +
                                                                                                                                                          746 
                                                                                                                                                          +
                                                                                                                                                          747  // Checking if we have updated the normalizing constant or not
                                                                                                                                                          +
                                                                                                                                                          748  if (!no_update_normconst && (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc])) )
                                                                                                                                                          +
                                                                                                                                                          749  {
                                                                                                                                                          +
                                                                                                                                                          750 
                                                                                                                                                          +
                                                                                                                                                          751  first_calc_done[loc] = true;
                                                                                                                                                          752 
                                                                                                                                                          -
                                                                                                                                                          753  // Checking if passes the rules
                                                                                                                                                          -
                                                                                                                                                          754  if (!support_fun.eval_rules_dyn(target_, 0u, 0u))
                                                                                                                                                          -
                                                                                                                                                          755  {
                                                                                                                                                          -
                                                                                                                                                          756 
                                                                                                                                                          -
                                                                                                                                                          757  // Concatenating the elements of target_ into aa single string
                                                                                                                                                          -
                                                                                                                                                          758  std::string target_str = "";
                                                                                                                                                          -
                                                                                                                                                          759  for (size_t i = 0u; i < target_.size(); ++i)
                                                                                                                                                          -
                                                                                                                                                          760  target_str += std::to_string(target_[i]) + " ";
                                                                                                                                                          -
                                                                                                                                                          761 
                                                                                                                                                          -
                                                                                                                                                          762  throw std::range_error(
                                                                                                                                                          -
                                                                                                                                                          763  "The array is not in the support set. The array's statistics are: " +
                                                                                                                                                          -
                                                                                                                                                          764  target_str +
                                                                                                                                                          -
                                                                                                                                                          765  std::string(".")
                                                                                                                                                          -
                                                                                                                                                          766  );
                                                                                                                                                          -
                                                                                                                                                          767  }
                                                                                                                                                          -
                                                                                                                                                          768 
                                                                                                                                                          -
                                                                                                                                                          769 
                                                                                                                                                          -
                                                                                                                                                          770  // Checking if this actually has a change of happening
                                                                                                                                                          -
                                                                                                                                                          771  if (this->stats_support[loc].size() == 0u)
                                                                                                                                                          -
                                                                                                                                                          772  {
                                                                                                                                                          -
                                                                                                                                                          773  throw std::logic_error("The support set for this array is empty.");
                                                                                                                                                          -
                                                                                                                                                          774  }
                                                                                                                                                          -
                                                                                                                                                          775 
                                                                                                                                                          -
                                                                                                                                                          776  // Checking if we have updated the normalizing constant or not
                                                                                                                                                          -
                                                                                                                                                          777  if (!no_update_normconst && (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc])) ) {
                                                                                                                                                          -
                                                                                                                                                          778 
                                                                                                                                                          -
                                                                                                                                                          779  first_calc_done[loc] = true;
                                                                                                                                                          -
                                                                                                                                                          780 
                                                                                                                                                          -
                                                                                                                                                          781  size_t k = params.size() + 1u;
                                                                                                                                                          -
                                                                                                                                                          782  size_t n = stats_support[loc].size() / k;
                                                                                                                                                          -
                                                                                                                                                          783 
                                                                                                                                                          -
                                                                                                                                                          784  normalizing_constants[loc] = update_normalizing_constant(
                                                                                                                                                          -
                                                                                                                                                          785  params, &stats_support[loc][0u], k, n
                                                                                                                                                          -
                                                                                                                                                          786  );
                                                                                                                                                          -
                                                                                                                                                          787 
                                                                                                                                                          -
                                                                                                                                                          788  params_last[loc] = params;
                                                                                                                                                          -
                                                                                                                                                          789 
                                                                                                                                                          -
                                                                                                                                                          790  }
                                                                                                                                                          -
                                                                                                                                                          791 
                                                                                                                                                          -
                                                                                                                                                          792  return likelihood_(
                                                                                                                                                          -
                                                                                                                                                          793  &target_[0u],
                                                                                                                                                          -
                                                                                                                                                          794  params,
                                                                                                                                                          -
                                                                                                                                                          795  normalizing_constants[loc],
                                                                                                                                                          -
                                                                                                                                                          796  nterms(),
                                                                                                                                                          -
                                                                                                                                                          797  as_log
                                                                                                                                                          -
                                                                                                                                                          798  );
                                                                                                                                                          -
                                                                                                                                                          799 
                                                                                                                                                          -
                                                                                                                                                          800 }
                                                                                                                                                          -
                                                                                                                                                          801 
                                                                                                                                                          -
                                                                                                                                                          802 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          803 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                                                                                          -
                                                                                                                                                          804  const std::vector<double> & params,
                                                                                                                                                          -
                                                                                                                                                          805  const double * target_,
                                                                                                                                                          -
                                                                                                                                                          806  const size_t & i,
                                                                                                                                                          -
                                                                                                                                                          807  bool as_log,
                                                                                                                                                          -
                                                                                                                                                          808  bool no_update_normconst
                                                                                                                                                          -
                                                                                                                                                          809 ) {
                                                                                                                                                          -
                                                                                                                                                          810 
                                                                                                                                                          -
                                                                                                                                                          811  // Checking if the index exists
                                                                                                                                                          -
                                                                                                                                                          812  if (i >= arrays2support.size())
                                                                                                                                                          -
                                                                                                                                                          813  throw std::range_error("The requested support is out of range");
                                                                                                                                                          -
                                                                                                                                                          814 
                                                                                                                                                          -
                                                                                                                                                          815  size_t loc = arrays2support[i];
                                                                                                                                                          -
                                                                                                                                                          816 
                                                                                                                                                          -
                                                                                                                                                          817  // Checking if passes the rules
                                                                                                                                                          -
                                                                                                                                                          818  if (support_fun.get_rules_dyn()->size() > 0u)
                                                                                                                                                          -
                                                                                                                                                          819  {
                                                                                                                                                          -
                                                                                                                                                          820 
                                                                                                                                                          -
                                                                                                                                                          821  std::vector< double > tmp_target;
                                                                                                                                                          -
                                                                                                                                                          822  tmp_target.reserve(nterms());
                                                                                                                                                          -
                                                                                                                                                          823  for (size_t t = 0u; t < nterms(); ++t)
                                                                                                                                                          -
                                                                                                                                                          824  tmp_target.push_back(*(target_ + t));
                                                                                                                                                          +
                                                                                                                                                          753  size_t k = params.size() + 1u;
                                                                                                                                                          +
                                                                                                                                                          754  size_t n = stats_support_sizes[loc];
                                                                                                                                                          +
                                                                                                                                                          755 
                                                                                                                                                          +
                                                                                                                                                          756  normalizing_constants[loc] = update_normalizing_constant(
                                                                                                                                                          +
                                                                                                                                                          757  params, &stats_support[
                                                                                                                                                          +
                                                                                                                                                          758  stats_support_sizes_acc[loc] * k
                                                                                                                                                          +
                                                                                                                                                          759  ], k, n
                                                                                                                                                          +
                                                                                                                                                          760  );
                                                                                                                                                          +
                                                                                                                                                          761 
                                                                                                                                                          +
                                                                                                                                                          762  params_last[loc] = params;
                                                                                                                                                          +
                                                                                                                                                          763 
                                                                                                                                                          +
                                                                                                                                                          764  }
                                                                                                                                                          +
                                                                                                                                                          765 
                                                                                                                                                          +
                                                                                                                                                          766  // Checking if passes the rules
                                                                                                                                                          +
                                                                                                                                                          767  if (!support_fun.eval_rules_dyn(target_, 0u, 0u))
                                                                                                                                                          +
                                                                                                                                                          768  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                                                                                          +
                                                                                                                                                          769 
                                                                                                                                                          +
                                                                                                                                                          770  return likelihood_(
                                                                                                                                                          +
                                                                                                                                                          771  &target_[0u],
                                                                                                                                                          +
                                                                                                                                                          772  params,
                                                                                                                                                          +
                                                                                                                                                          773  normalizing_constants[loc],
                                                                                                                                                          +
                                                                                                                                                          774  nterms(),
                                                                                                                                                          +
                                                                                                                                                          775  as_log
                                                                                                                                                          +
                                                                                                                                                          776  );
                                                                                                                                                          +
                                                                                                                                                          777 
                                                                                                                                                          +
                                                                                                                                                          778 }
                                                                                                                                                          +
                                                                                                                                                          779 
                                                                                                                                                          +
                                                                                                                                                          780 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          781 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                                                                                          +
                                                                                                                                                          782  const std::vector<double> & params,
                                                                                                                                                          +
                                                                                                                                                          783  const std::vector<double> & target_,
                                                                                                                                                          +
                                                                                                                                                          784  const size_t & i,
                                                                                                                                                          +
                                                                                                                                                          785  bool as_log,
                                                                                                                                                          +
                                                                                                                                                          786  bool no_update_normconst
                                                                                                                                                          +
                                                                                                                                                          787 ) {
                                                                                                                                                          +
                                                                                                                                                          788 
                                                                                                                                                          +
                                                                                                                                                          789  // Checking if the index exists
                                                                                                                                                          +
                                                                                                                                                          790  if (i >= arrays2support.size())
                                                                                                                                                          +
                                                                                                                                                          791  throw std::range_error("The requested support is out of range");
                                                                                                                                                          +
                                                                                                                                                          792 
                                                                                                                                                          +
                                                                                                                                                          793  size_t loc = arrays2support[i];
                                                                                                                                                          +
                                                                                                                                                          794 
                                                                                                                                                          +
                                                                                                                                                          795  // Checking if passes the rules
                                                                                                                                                          +
                                                                                                                                                          796  if (!support_fun.eval_rules_dyn(target_, 0u, 0u))
                                                                                                                                                          +
                                                                                                                                                          797  {
                                                                                                                                                          +
                                                                                                                                                          798 
                                                                                                                                                          +
                                                                                                                                                          799  // Concatenating the elements of target_ into aa single string
                                                                                                                                                          +
                                                                                                                                                          800  std::string target_str = "";
                                                                                                                                                          +
                                                                                                                                                          801  for (size_t i = 0u; i < target_.size(); ++i)
                                                                                                                                                          +
                                                                                                                                                          802  target_str += std::to_string(target_[i]) + " ";
                                                                                                                                                          +
                                                                                                                                                          803 
                                                                                                                                                          +
                                                                                                                                                          804  throw std::range_error(
                                                                                                                                                          +
                                                                                                                                                          805  "The array is not in the support set. The array's statistics are: " +
                                                                                                                                                          +
                                                                                                                                                          806  target_str +
                                                                                                                                                          +
                                                                                                                                                          807  std::string(".")
                                                                                                                                                          +
                                                                                                                                                          808  );
                                                                                                                                                          +
                                                                                                                                                          809  }
                                                                                                                                                          +
                                                                                                                                                          810 
                                                                                                                                                          +
                                                                                                                                                          811 
                                                                                                                                                          +
                                                                                                                                                          812  // Checking if this actually has a change of happening
                                                                                                                                                          +
                                                                                                                                                          813  if (this->stats_support_sizes[loc] == 0u)
                                                                                                                                                          +
                                                                                                                                                          814  {
                                                                                                                                                          +
                                                                                                                                                          815  throw std::logic_error("The support set for this array is empty.");
                                                                                                                                                          +
                                                                                                                                                          816  }
                                                                                                                                                          +
                                                                                                                                                          817 
                                                                                                                                                          +
                                                                                                                                                          818  // Checking if we have updated the normalizing constant or not
                                                                                                                                                          +
                                                                                                                                                          819  if (!no_update_normconst && (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc])) ) {
                                                                                                                                                          +
                                                                                                                                                          820 
                                                                                                                                                          +
                                                                                                                                                          821  first_calc_done[loc] = true;
                                                                                                                                                          +
                                                                                                                                                          822 
                                                                                                                                                          +
                                                                                                                                                          823  size_t k = params.size() + 1u;
                                                                                                                                                          +
                                                                                                                                                          824  size_t n = stats_support_sizes[loc];
                                                                                                                                                          825 
                                                                                                                                                          -
                                                                                                                                                          826  if (!support_fun.eval_rules_dyn(tmp_target, 0u, 0u))
                                                                                                                                                          -
                                                                                                                                                          827  {
                                                                                                                                                          -
                                                                                                                                                          828  // Concatenating the elements of target_ into aa single string
                                                                                                                                                          -
                                                                                                                                                          829  std::string target_str = "";
                                                                                                                                                          -
                                                                                                                                                          830  for (size_t i = 0u; i < nterms(); ++i)
                                                                                                                                                          -
                                                                                                                                                          831  target_str += std::to_string((*target_ + i)) + " ";
                                                                                                                                                          -
                                                                                                                                                          832 
                                                                                                                                                          -
                                                                                                                                                          833  throw std::range_error(
                                                                                                                                                          -
                                                                                                                                                          834  "The array is not in the support set. The array's statistics are: " + target_str + std::string(".")
                                                                                                                                                          -
                                                                                                                                                          835  );
                                                                                                                                                          -
                                                                                                                                                          836  }
                                                                                                                                                          -
                                                                                                                                                          837 
                                                                                                                                                          -
                                                                                                                                                          838  }
                                                                                                                                                          -
                                                                                                                                                          839 
                                                                                                                                                          -
                                                                                                                                                          840  // Checking if this actually has a change of happening
                                                                                                                                                          -
                                                                                                                                                          841  if (this->stats_support[loc].size() == 0u)
                                                                                                                                                          -
                                                                                                                                                          842  {
                                                                                                                                                          -
                                                                                                                                                          843  throw std::logic_error("The support set for this array is empty.");
                                                                                                                                                          -
                                                                                                                                                          844  }
                                                                                                                                                          -
                                                                                                                                                          845 
                                                                                                                                                          -
                                                                                                                                                          846  // Checking if we have updated the normalizing constant or not
                                                                                                                                                          -
                                                                                                                                                          847  if (!no_update_normconst && (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc]) )) {
                                                                                                                                                          -
                                                                                                                                                          848 
                                                                                                                                                          -
                                                                                                                                                          849  first_calc_done[loc] = true;
                                                                                                                                                          -
                                                                                                                                                          850 
                                                                                                                                                          -
                                                                                                                                                          851  size_t k = params.size() + 1u;
                                                                                                                                                          -
                                                                                                                                                          852  size_t n = stats_support[loc].size() / k;
                                                                                                                                                          -
                                                                                                                                                          853 
                                                                                                                                                          -
                                                                                                                                                          854  normalizing_constants[loc] = update_normalizing_constant(
                                                                                                                                                          -
                                                                                                                                                          855  params, &stats_support[loc][0u], k, n
                                                                                                                                                          -
                                                                                                                                                          856  );
                                                                                                                                                          -
                                                                                                                                                          857 
                                                                                                                                                          -
                                                                                                                                                          858  params_last[loc] = params;
                                                                                                                                                          -
                                                                                                                                                          859 
                                                                                                                                                          -
                                                                                                                                                          860  }
                                                                                                                                                          -
                                                                                                                                                          861 
                                                                                                                                                          -
                                                                                                                                                          862  return likelihood_(
                                                                                                                                                          -
                                                                                                                                                          863  target_,
                                                                                                                                                          -
                                                                                                                                                          864  params,
                                                                                                                                                          -
                                                                                                                                                          865  normalizing_constants[loc],
                                                                                                                                                          -
                                                                                                                                                          866  nterms(),
                                                                                                                                                          -
                                                                                                                                                          867  as_log
                                                                                                                                                          -
                                                                                                                                                          868  );
                                                                                                                                                          -
                                                                                                                                                          869 
                                                                                                                                                          -
                                                                                                                                                          870 }
                                                                                                                                                          -
                                                                                                                                                          871 
                                                                                                                                                          -
                                                                                                                                                          872 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          873 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood_total(
                                                                                                                                                          -
                                                                                                                                                          874  const std::vector<double> & params,
                                                                                                                                                          -
                                                                                                                                                          875  bool as_log,
                                                                                                                                                          -
                                                                                                                                                          876  BARRY_NCORES_ARG(),
                                                                                                                                                          -
                                                                                                                                                          877  bool no_update_normconst
                                                                                                                                                          -
                                                                                                                                                          878 ) {
                                                                                                                                                          -
                                                                                                                                                          879 
                                                                                                                                                          -
                                                                                                                                                          880  size_t params_last_size = params_last.size();
                                                                                                                                                          +
                                                                                                                                                          826  normalizing_constants[loc] = update_normalizing_constant(
                                                                                                                                                          +
                                                                                                                                                          827  params, &stats_support[
                                                                                                                                                          +
                                                                                                                                                          828  stats_support_sizes_acc[loc] * k
                                                                                                                                                          +
                                                                                                                                                          829  ], k, n
                                                                                                                                                          +
                                                                                                                                                          830  );
                                                                                                                                                          +
                                                                                                                                                          831 
                                                                                                                                                          +
                                                                                                                                                          832  params_last[loc] = params;
                                                                                                                                                          +
                                                                                                                                                          833 
                                                                                                                                                          +
                                                                                                                                                          834  }
                                                                                                                                                          +
                                                                                                                                                          835 
                                                                                                                                                          +
                                                                                                                                                          836  return likelihood_(
                                                                                                                                                          +
                                                                                                                                                          837  &target_[0u],
                                                                                                                                                          +
                                                                                                                                                          838  params,
                                                                                                                                                          +
                                                                                                                                                          839  normalizing_constants[loc],
                                                                                                                                                          +
                                                                                                                                                          840  nterms(),
                                                                                                                                                          +
                                                                                                                                                          841  as_log
                                                                                                                                                          +
                                                                                                                                                          842  );
                                                                                                                                                          +
                                                                                                                                                          843 
                                                                                                                                                          +
                                                                                                                                                          844 }
                                                                                                                                                          +
                                                                                                                                                          845 
                                                                                                                                                          +
                                                                                                                                                          846 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          847 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                                                                                          +
                                                                                                                                                          848  const std::vector<double> & params,
                                                                                                                                                          +
                                                                                                                                                          849  const double * target_,
                                                                                                                                                          +
                                                                                                                                                          850  const size_t & i,
                                                                                                                                                          +
                                                                                                                                                          851  bool as_log,
                                                                                                                                                          +
                                                                                                                                                          852  bool no_update_normconst
                                                                                                                                                          +
                                                                                                                                                          853 ) {
                                                                                                                                                          +
                                                                                                                                                          854 
                                                                                                                                                          +
                                                                                                                                                          855  // Checking if the index exists
                                                                                                                                                          +
                                                                                                                                                          856  if (i >= arrays2support.size())
                                                                                                                                                          +
                                                                                                                                                          857  throw std::range_error("The requested support is out of range");
                                                                                                                                                          +
                                                                                                                                                          858 
                                                                                                                                                          +
                                                                                                                                                          859  size_t loc = arrays2support[i];
                                                                                                                                                          +
                                                                                                                                                          860 
                                                                                                                                                          +
                                                                                                                                                          861  // Checking if passes the rules
                                                                                                                                                          +
                                                                                                                                                          862  if (support_fun.get_rules_dyn()->size() > 0u)
                                                                                                                                                          +
                                                                                                                                                          863  {
                                                                                                                                                          +
                                                                                                                                                          864 
                                                                                                                                                          +
                                                                                                                                                          865  std::vector< double > tmp_target;
                                                                                                                                                          +
                                                                                                                                                          866  tmp_target.reserve(nterms());
                                                                                                                                                          +
                                                                                                                                                          867  for (size_t t = 0u; t < nterms(); ++t)
                                                                                                                                                          +
                                                                                                                                                          868  tmp_target.push_back(*(target_ + t));
                                                                                                                                                          +
                                                                                                                                                          869 
                                                                                                                                                          +
                                                                                                                                                          870  if (!support_fun.eval_rules_dyn(tmp_target, 0u, 0u))
                                                                                                                                                          +
                                                                                                                                                          871  {
                                                                                                                                                          +
                                                                                                                                                          872  // Concatenating the elements of target_ into aa single string
                                                                                                                                                          +
                                                                                                                                                          873  std::string target_str = "";
                                                                                                                                                          +
                                                                                                                                                          874  for (size_t i = 0u; i < nterms(); ++i)
                                                                                                                                                          +
                                                                                                                                                          875  target_str += std::to_string((*target_ + i)) + " ";
                                                                                                                                                          +
                                                                                                                                                          876 
                                                                                                                                                          +
                                                                                                                                                          877  throw std::range_error(
                                                                                                                                                          +
                                                                                                                                                          878  "The array is not in the support set. The array's statistics are: " + target_str + std::string(".")
                                                                                                                                                          +
                                                                                                                                                          879  );
                                                                                                                                                          +
                                                                                                                                                          880  }
                                                                                                                                                          881 
                                                                                                                                                          -
                                                                                                                                                          882  if (!no_update_normconst)
                                                                                                                                                          -
                                                                                                                                                          883  {
                                                                                                                                                          -
                                                                                                                                                          884  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                                                                                          -
                                                                                                                                                          885  #pragma omp parallel for num_threads(ncores) \
                                                                                                                                                          -
                                                                                                                                                          886  shared(normalizing_constants, params_last, first_calc_done, stats_support) \
                                                                                                                                                          -
                                                                                                                                                          887  firstprivate(params)
                                                                                                                                                          -
                                                                                                                                                          888  #endif
                                                                                                                                                          -
                                                                                                                                                          889  for (size_t i = 0u; i < params_last_size; ++i)
                                                                                                                                                          -
                                                                                                                                                          890  {
                                                                                                                                                          -
                                                                                                                                                          891 
                                                                                                                                                          -
                                                                                                                                                          892  if (!first_calc_done[i] || !vec_equal_approx(params, params_last[i]) )
                                                                                                                                                          -
                                                                                                                                                          893  {
                                                                                                                                                          -
                                                                                                                                                          894 
                                                                                                                                                          -
                                                                                                                                                          895  size_t k = params.size() + 1u;
                                                                                                                                                          -
                                                                                                                                                          896  size_t n = stats_support[i].size() / k;
                                                                                                                                                          -
                                                                                                                                                          897 
                                                                                                                                                          -
                                                                                                                                                          898  first_calc_done[i] = true;
                                                                                                                                                          -
                                                                                                                                                          899  normalizing_constants[i] = update_normalizing_constant(
                                                                                                                                                          -
                                                                                                                                                          900  params, &stats_support[i][0u], k, n
                                                                                                                                                          -
                                                                                                                                                          901  );
                                                                                                                                                          -
                                                                                                                                                          902 
                                                                                                                                                          -
                                                                                                                                                          903  params_last[i] = params;
                                                                                                                                                          -
                                                                                                                                                          904 
                                                                                                                                                          -
                                                                                                                                                          905  }
                                                                                                                                                          -
                                                                                                                                                          906 
                                                                                                                                                          -
                                                                                                                                                          907  }
                                                                                                                                                          -
                                                                                                                                                          908  }
                                                                                                                                                          -
                                                                                                                                                          909 
                                                                                                                                                          -
                                                                                                                                                          910  double res = 0.0;
                                                                                                                                                          -
                                                                                                                                                          911  if (as_log)
                                                                                                                                                          -
                                                                                                                                                          912  {
                                                                                                                                                          -
                                                                                                                                                          913 
                                                                                                                                                          -
                                                                                                                                                          914  for (size_t i = 0; i < stats_target.size(); ++i)
                                                                                                                                                          -
                                                                                                                                                          915  res += vec_inner_prod(
                                                                                                                                                          -
                                                                                                                                                          916  &stats_target[i][0u],
                                                                                                                                                          -
                                                                                                                                                          917  &params[0u],
                                                                                                                                                          -
                                                                                                                                                          918  params.size()
                                                                                                                                                          -
                                                                                                                                                          919  ) BARRY_SAFE_EXP;
                                                                                                                                                          -
                                                                                                                                                          920 
                                                                                                                                                          -
                                                                                                                                                          921  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                                                                                          -
                                                                                                                                                          922  #pragma omp simd reduction(-:res)
                                                                                                                                                          -
                                                                                                                                                          923  #endif
                                                                                                                                                          -
                                                                                                                                                          924  for (size_t i = 0u; i < params_last_size; ++i)
                                                                                                                                                          -
                                                                                                                                                          925  res -= (std::log(normalizing_constants[i]) * this->stats_support_n_arrays[i]);
                                                                                                                                                          -
                                                                                                                                                          926 
                                                                                                                                                          -
                                                                                                                                                          927  } else {
                                                                                                                                                          -
                                                                                                                                                          928 
                                                                                                                                                          -
                                                                                                                                                          929  res = 1.0;
                                                                                                                                                          -
                                                                                                                                                          930  size_t stats_target_size = stats_target.size();
                                                                                                                                                          -
                                                                                                                                                          931  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                                                                                          -
                                                                                                                                                          932  #pragma omp simd reduction(*:res)
                                                                                                                                                          -
                                                                                                                                                          933  #endif
                                                                                                                                                          -
                                                                                                                                                          934  for (size_t i = 0; i < stats_target_size; ++i)
                                                                                                                                                          -
                                                                                                                                                          935  res *= std::exp(
                                                                                                                                                          -
                                                                                                                                                          936  vec_inner_prod(
                                                                                                                                                          -
                                                                                                                                                          937  &stats_target[i][0u],
                                                                                                                                                          -
                                                                                                                                                          938  &params[0u],
                                                                                                                                                          -
                                                                                                                                                          939  params.size()
                                                                                                                                                          -
                                                                                                                                                          940  ) BARRY_SAFE_EXP) /
                                                                                                                                                          -
                                                                                                                                                          941  normalizing_constants[arrays2support[i]];
                                                                                                                                                          -
                                                                                                                                                          942 
                                                                                                                                                          -
                                                                                                                                                          943  }
                                                                                                                                                          -
                                                                                                                                                          944 
                                                                                                                                                          -
                                                                                                                                                          945  return res;
                                                                                                                                                          -
                                                                                                                                                          946 
                                                                                                                                                          -
                                                                                                                                                          947 }
                                                                                                                                                          -
                                                                                                                                                          948 
                                                                                                                                                          -
                                                                                                                                                          949 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          950 inline std::vector< double > &
                                                                                                                                                          -
                                                                                                                                                          951 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_normalizing_constants() {
                                                                                                                                                          -
                                                                                                                                                          952 
                                                                                                                                                          -
                                                                                                                                                          953  return normalizing_constants;
                                                                                                                                                          -
                                                                                                                                                          954 
                                                                                                                                                          -
                                                                                                                                                          955 }
                                                                                                                                                          -
                                                                                                                                                          956 
                                                                                                                                                          -
                                                                                                                                                          957 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          958 inline const std::vector< Array_Type > *
                                                                                                                                                          -
                                                                                                                                                          959 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_pset(
                                                                                                                                                          -
                                                                                                                                                          960  const size_t & i
                                                                                                                                                          -
                                                                                                                                                          961 ) {
                                                                                                                                                          +
                                                                                                                                                          882  }
                                                                                                                                                          +
                                                                                                                                                          883 
                                                                                                                                                          +
                                                                                                                                                          884  // Checking if this actually has a change of happening
                                                                                                                                                          +
                                                                                                                                                          885  if (this->stats_support_sizes[loc] == 0u)
                                                                                                                                                          +
                                                                                                                                                          886  {
                                                                                                                                                          +
                                                                                                                                                          887  throw std::logic_error("The support set for this array is empty.");
                                                                                                                                                          +
                                                                                                                                                          888  }
                                                                                                                                                          +
                                                                                                                                                          889 
                                                                                                                                                          +
                                                                                                                                                          890  // Checking if we have updated the normalizing constant or not
                                                                                                                                                          +
                                                                                                                                                          891  if (!no_update_normconst && (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc]) )) {
                                                                                                                                                          +
                                                                                                                                                          892 
                                                                                                                                                          +
                                                                                                                                                          893  first_calc_done[loc] = true;
                                                                                                                                                          +
                                                                                                                                                          894 
                                                                                                                                                          +
                                                                                                                                                          895  size_t k = params.size() + 1u;
                                                                                                                                                          +
                                                                                                                                                          896  size_t n = stats_support_sizes[loc];
                                                                                                                                                          +
                                                                                                                                                          897 
                                                                                                                                                          +
                                                                                                                                                          898  normalizing_constants[loc] = update_normalizing_constant(
                                                                                                                                                          +
                                                                                                                                                          899  params, &stats_support[
                                                                                                                                                          +
                                                                                                                                                          900  stats_support_sizes_acc[loc] * k
                                                                                                                                                          +
                                                                                                                                                          901  ], k, n
                                                                                                                                                          +
                                                                                                                                                          902  );
                                                                                                                                                          +
                                                                                                                                                          903 
                                                                                                                                                          +
                                                                                                                                                          904  params_last[loc] = params;
                                                                                                                                                          +
                                                                                                                                                          905 
                                                                                                                                                          +
                                                                                                                                                          906  }
                                                                                                                                                          +
                                                                                                                                                          907 
                                                                                                                                                          +
                                                                                                                                                          908  return likelihood_(
                                                                                                                                                          +
                                                                                                                                                          909  target_,
                                                                                                                                                          +
                                                                                                                                                          910  params,
                                                                                                                                                          +
                                                                                                                                                          911  normalizing_constants[loc],
                                                                                                                                                          +
                                                                                                                                                          912  nterms(),
                                                                                                                                                          +
                                                                                                                                                          913  as_log
                                                                                                                                                          +
                                                                                                                                                          914  );
                                                                                                                                                          +
                                                                                                                                                          915 
                                                                                                                                                          +
                                                                                                                                                          916 }
                                                                                                                                                          +
                                                                                                                                                          917 
                                                                                                                                                          +
                                                                                                                                                          918 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          919 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood_total(
                                                                                                                                                          +
                                                                                                                                                          920  const std::vector<double> & params,
                                                                                                                                                          +
                                                                                                                                                          921  bool as_log,
                                                                                                                                                          +
                                                                                                                                                          922  BARRY_NCORES_ARG(),
                                                                                                                                                          +
                                                                                                                                                          923  bool no_update_normconst
                                                                                                                                                          +
                                                                                                                                                          924 ) {
                                                                                                                                                          +
                                                                                                                                                          925 
                                                                                                                                                          +
                                                                                                                                                          926  size_t params_last_size = params_last.size();
                                                                                                                                                          +
                                                                                                                                                          927 
                                                                                                                                                          +
                                                                                                                                                          928  if (!no_update_normconst)
                                                                                                                                                          +
                                                                                                                                                          929  {
                                                                                                                                                          +
                                                                                                                                                          930  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                                                                                          +
                                                                                                                                                          931  #pragma omp parallel for num_threads(ncores) \
                                                                                                                                                          +
                                                                                                                                                          932  shared(normalizing_constants, params_last, first_calc_done, \
                                                                                                                                                          +
                                                                                                                                                          933  stats_support, stats_support_sizes, stats_support_sizes_acc) \
                                                                                                                                                          +
                                                                                                                                                          934  firstprivate(params)
                                                                                                                                                          +
                                                                                                                                                          935  #endif
                                                                                                                                                          +
                                                                                                                                                          936  for (size_t i = 0u; i < params_last_size; ++i)
                                                                                                                                                          +
                                                                                                                                                          937  {
                                                                                                                                                          +
                                                                                                                                                          938 
                                                                                                                                                          +
                                                                                                                                                          939  if (!first_calc_done[i] || !vec_equal_approx(params, params_last[i]) )
                                                                                                                                                          +
                                                                                                                                                          940  {
                                                                                                                                                          +
                                                                                                                                                          941 
                                                                                                                                                          +
                                                                                                                                                          942  size_t k = params.size() + 1u;
                                                                                                                                                          +
                                                                                                                                                          943  size_t n = stats_support_sizes[i];
                                                                                                                                                          +
                                                                                                                                                          944 
                                                                                                                                                          +
                                                                                                                                                          945  first_calc_done[i] = true;
                                                                                                                                                          +
                                                                                                                                                          946  normalizing_constants[i] = update_normalizing_constant(
                                                                                                                                                          +
                                                                                                                                                          947  params, &stats_support[
                                                                                                                                                          +
                                                                                                                                                          948  stats_support_sizes_acc[i] * k
                                                                                                                                                          +
                                                                                                                                                          949  ], k, n
                                                                                                                                                          +
                                                                                                                                                          950  );
                                                                                                                                                          +
                                                                                                                                                          951 
                                                                                                                                                          +
                                                                                                                                                          952  params_last[i] = params;
                                                                                                                                                          +
                                                                                                                                                          953 
                                                                                                                                                          +
                                                                                                                                                          954  }
                                                                                                                                                          +
                                                                                                                                                          955 
                                                                                                                                                          +
                                                                                                                                                          956  }
                                                                                                                                                          +
                                                                                                                                                          957  }
                                                                                                                                                          +
                                                                                                                                                          958 
                                                                                                                                                          +
                                                                                                                                                          959  double res = 0.0;
                                                                                                                                                          +
                                                                                                                                                          960  if (as_log)
                                                                                                                                                          +
                                                                                                                                                          961  {
                                                                                                                                                          962 
                                                                                                                                                          -
                                                                                                                                                          963  if (i >= arrays2support.size())
                                                                                                                                                          -
                                                                                                                                                          964  throw std::range_error("The requested support is out of range");
                                                                                                                                                          -
                                                                                                                                                          965 
                                                                                                                                                          -
                                                                                                                                                          966 
                                                                                                                                                          -
                                                                                                                                                          967  return &pset_arrays[arrays2support[i]];
                                                                                                                                                          -
                                                                                                                                                          968 
                                                                                                                                                          -
                                                                                                                                                          969 }
                                                                                                                                                          -
                                                                                                                                                          970 
                                                                                                                                                          -
                                                                                                                                                          971 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          972 inline const std::vector< double > *
                                                                                                                                                          -
                                                                                                                                                          973 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_pset_stats(
                                                                                                                                                          -
                                                                                                                                                          974  const size_t & i
                                                                                                                                                          -
                                                                                                                                                          975 ) {
                                                                                                                                                          -
                                                                                                                                                          976 
                                                                                                                                                          -
                                                                                                                                                          977  if (i >= arrays2support.size())
                                                                                                                                                          -
                                                                                                                                                          978  throw std::range_error("The requested support is out of range");
                                                                                                                                                          -
                                                                                                                                                          979 
                                                                                                                                                          -
                                                                                                                                                          980  return &pset_stats[arrays2support[i]];
                                                                                                                                                          -
                                                                                                                                                          981 
                                                                                                                                                          -
                                                                                                                                                          982 }
                                                                                                                                                          -
                                                                                                                                                          983 
                                                                                                                                                          -
                                                                                                                                                          984 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          985 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: print_stats(size_t i) const
                                                                                                                                                          -
                                                                                                                                                          986 {
                                                                                                                                                          -
                                                                                                                                                          987 
                                                                                                                                                          -
                                                                                                                                                          988  if (i >= arrays2support.size())
                                                                                                                                                          -
                                                                                                                                                          989  throw std::range_error("The requested support is out of range");
                                                                                                                                                          -
                                                                                                                                                          990 
                                                                                                                                                          -
                                                                                                                                                          991  const auto & S = stats_support[arrays2support[i]];
                                                                                                                                                          -
                                                                                                                                                          992 
                                                                                                                                                          -
                                                                                                                                                          993  size_t k = nterms();
                                                                                                                                                          -
                                                                                                                                                          994  size_t nunique = S.size() / (k + 1u);
                                                                                                                                                          -
                                                                                                                                                          995 
                                                                                                                                                          -
                                                                                                                                                          996  for (size_t l = 0u; l < nunique; ++l)
                                                                                                                                                          -
                                                                                                                                                          997  {
                                                                                                                                                          -
                                                                                                                                                          998 
                                                                                                                                                          -
                                                                                                                                                          999  printf_barry("% 5li ", l);
                                                                                                                                                          -
                                                                                                                                                          1000 
                                                                                                                                                          -
                                                                                                                                                          1001  printf_barry("counts: %.0f motif: ", S[l * (k + 1u)]);
                                                                                                                                                          -
                                                                                                                                                          1002 
                                                                                                                                                          -
                                                                                                                                                          1003  for (size_t j = 0u; j < k; ++j)
                                                                                                                                                          -
                                                                                                                                                          1004  printf_barry("%.2f, ", S[l * (k + 1) + j + 1]);
                                                                                                                                                          +
                                                                                                                                                          963  for (size_t i = 0; i < stats_target.size(); ++i)
                                                                                                                                                          +
                                                                                                                                                          964  res += vec_inner_prod(
                                                                                                                                                          +
                                                                                                                                                          965  &stats_target[i][0u],
                                                                                                                                                          +
                                                                                                                                                          966  &params[0u],
                                                                                                                                                          +
                                                                                                                                                          967  params.size()
                                                                                                                                                          +
                                                                                                                                                          968  ) BARRY_SAFE_EXP;
                                                                                                                                                          +
                                                                                                                                                          969 
                                                                                                                                                          +
                                                                                                                                                          970  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                                                                                          +
                                                                                                                                                          971  #pragma omp simd reduction(-:res)
                                                                                                                                                          +
                                                                                                                                                          972  #endif
                                                                                                                                                          +
                                                                                                                                                          973  for (size_t i = 0u; i < params_last_size; ++i)
                                                                                                                                                          +
                                                                                                                                                          974  res -= (std::log(normalizing_constants[i]) * this->stats_support_n_arrays[i]);
                                                                                                                                                          +
                                                                                                                                                          975 
                                                                                                                                                          +
                                                                                                                                                          976  } else {
                                                                                                                                                          +
                                                                                                                                                          977 
                                                                                                                                                          +
                                                                                                                                                          978  res = 1.0;
                                                                                                                                                          +
                                                                                                                                                          979  size_t stats_target_size = stats_target.size();
                                                                                                                                                          +
                                                                                                                                                          980  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                                                                                          +
                                                                                                                                                          981  #pragma omp simd reduction(*:res)
                                                                                                                                                          +
                                                                                                                                                          982  #endif
                                                                                                                                                          +
                                                                                                                                                          983  for (size_t i = 0; i < stats_target_size; ++i)
                                                                                                                                                          +
                                                                                                                                                          984  res *= std::exp(
                                                                                                                                                          +
                                                                                                                                                          985  vec_inner_prod(
                                                                                                                                                          +
                                                                                                                                                          986  &stats_target[i][0u],
                                                                                                                                                          +
                                                                                                                                                          987  &params[0u],
                                                                                                                                                          +
                                                                                                                                                          988  params.size()
                                                                                                                                                          +
                                                                                                                                                          989  ) BARRY_SAFE_EXP) /
                                                                                                                                                          +
                                                                                                                                                          990  normalizing_constants[arrays2support[i]];
                                                                                                                                                          +
                                                                                                                                                          991 
                                                                                                                                                          +
                                                                                                                                                          992  }
                                                                                                                                                          +
                                                                                                                                                          993 
                                                                                                                                                          +
                                                                                                                                                          994  return res;
                                                                                                                                                          +
                                                                                                                                                          995 
                                                                                                                                                          +
                                                                                                                                                          996 }
                                                                                                                                                          +
                                                                                                                                                          997 
                                                                                                                                                          +
                                                                                                                                                          998 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          999 inline std::vector< double > &
                                                                                                                                                          +
                                                                                                                                                          1000 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_normalizing_constants() {
                                                                                                                                                          +
                                                                                                                                                          1001 
                                                                                                                                                          +
                                                                                                                                                          1002  return normalizing_constants;
                                                                                                                                                          +
                                                                                                                                                          1003 
                                                                                                                                                          +
                                                                                                                                                          1004 }
                                                                                                                                                          1005 
                                                                                                                                                          -
                                                                                                                                                          1006  printf_barry("\n");
                                                                                                                                                          -
                                                                                                                                                          1007 
                                                                                                                                                          -
                                                                                                                                                          1008  }
                                                                                                                                                          -
                                                                                                                                                          1009 
                                                                                                                                                          -
                                                                                                                                                          1010  return;
                                                                                                                                                          -
                                                                                                                                                          1011 
                                                                                                                                                          -
                                                                                                                                                          1012 }
                                                                                                                                                          -
                                                                                                                                                          1013 
                                                                                                                                                          -
                                                                                                                                                          1014 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1015 inline void Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::print() const
                                                                                                                                                          -
                                                                                                                                                          1016 {
                                                                                                                                                          +
                                                                                                                                                          1006 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1007 inline const std::vector< Array_Type > *
                                                                                                                                                          +
                                                                                                                                                          1008 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_pset(
                                                                                                                                                          +
                                                                                                                                                          1009  const size_t & i
                                                                                                                                                          +
                                                                                                                                                          1010 ) {
                                                                                                                                                          +
                                                                                                                                                          1011 
                                                                                                                                                          +
                                                                                                                                                          1012  if (i >= arrays2support.size())
                                                                                                                                                          +
                                                                                                                                                          1013  throw std::range_error("The requested support is out of range");
                                                                                                                                                          +
                                                                                                                                                          1014 
                                                                                                                                                          +
                                                                                                                                                          1015 
                                                                                                                                                          +
                                                                                                                                                          1016  return &pset_arrays[arrays2support[i]];
                                                                                                                                                          1017 
                                                                                                                                                          -
                                                                                                                                                          1018  // Relevant information:
                                                                                                                                                          -
                                                                                                                                                          1019  // - Number of arrays involved
                                                                                                                                                          -
                                                                                                                                                          1020  // - Size of the support
                                                                                                                                                          -
                                                                                                                                                          1021  // - Terms involved
                                                                                                                                                          -
                                                                                                                                                          1022 
                                                                                                                                                          -
                                                                                                                                                          1023  int min_v = std::numeric_limits<int>::max();
                                                                                                                                                          -
                                                                                                                                                          1024  int max_v = 0;
                                                                                                                                                          +
                                                                                                                                                          1018 }
                                                                                                                                                          +
                                                                                                                                                          1019 
                                                                                                                                                          +
                                                                                                                                                          1020 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1021 inline const std::vector< double > *
                                                                                                                                                          +
                                                                                                                                                          1022 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_pset_stats(
                                                                                                                                                          +
                                                                                                                                                          1023  const size_t & i
                                                                                                                                                          +
                                                                                                                                                          1024 ) {
                                                                                                                                                          1025 
                                                                                                                                                          -
                                                                                                                                                          1026  for (const auto & stat : this->stats_support)
                                                                                                                                                          -
                                                                                                                                                          1027  {
                                                                                                                                                          +
                                                                                                                                                          1026  if (i >= arrays2support.size())
                                                                                                                                                          +
                                                                                                                                                          1027  throw std::range_error("The requested support is out of range");
                                                                                                                                                          1028 
                                                                                                                                                          -
                                                                                                                                                          1029  if (static_cast<int>(stat.size()) > max_v)
                                                                                                                                                          -
                                                                                                                                                          1030  max_v = static_cast<int>(stat.size());
                                                                                                                                                          -
                                                                                                                                                          1031 
                                                                                                                                                          -
                                                                                                                                                          1032  if (static_cast<int>(stat.size()) < min_v)
                                                                                                                                                          -
                                                                                                                                                          1033  min_v = static_cast<int>(stat.size());
                                                                                                                                                          -
                                                                                                                                                          1034 
                                                                                                                                                          -
                                                                                                                                                          1035  }
                                                                                                                                                          -
                                                                                                                                                          1036 
                                                                                                                                                          -
                                                                                                                                                          1037  // The vectors in the support reflec the size of nterms x entries
                                                                                                                                                          -
                                                                                                                                                          1038  max_v /= static_cast<int>(nterms() + 1);
                                                                                                                                                          -
                                                                                                                                                          1039  min_v /= static_cast<int>(nterms() + 1);
                                                                                                                                                          -
                                                                                                                                                          1040 
                                                                                                                                                          -
                                                                                                                                                          1041  printf_barry("Num. of Arrays : %li\n", this->size());
                                                                                                                                                          -
                                                                                                                                                          1042  printf_barry("Support size : %li\n", this->size_unique());
                                                                                                                                                          -
                                                                                                                                                          1043  printf_barry("Support size range : [%i, %i]\n", min_v, max_v);
                                                                                                                                                          -
                                                                                                                                                          1044  printf_barry("Transform. Fun. : %s\n", transform_model_fun ? "yes": "no");
                                                                                                                                                          -
                                                                                                                                                          1045  printf_barry("Model terms (%li) :\n", this->nterms());
                                                                                                                                                          -
                                                                                                                                                          1046  for (auto & cn : this->colnames())
                                                                                                                                                          +
                                                                                                                                                          1029  return &pset_stats[arrays2support[i]];
                                                                                                                                                          +
                                                                                                                                                          1030 
                                                                                                                                                          +
                                                                                                                                                          1031 }
                                                                                                                                                          +
                                                                                                                                                          1032 
                                                                                                                                                          +
                                                                                                                                                          1033 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1034 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: print_stats(size_t i) const
                                                                                                                                                          +
                                                                                                                                                          1035 {
                                                                                                                                                          +
                                                                                                                                                          1036 
                                                                                                                                                          +
                                                                                                                                                          1037  if (i >= arrays2support.size())
                                                                                                                                                          +
                                                                                                                                                          1038  throw std::range_error("The requested support is out of range");
                                                                                                                                                          +
                                                                                                                                                          1039 
                                                                                                                                                          +
                                                                                                                                                          1040  // const auto & S = stats_support[arrays2support[i]];
                                                                                                                                                          +
                                                                                                                                                          1041  size_t array_id = arrays2support[i];
                                                                                                                                                          +
                                                                                                                                                          1042 
                                                                                                                                                          +
                                                                                                                                                          1043  size_t k = nterms();
                                                                                                                                                          +
                                                                                                                                                          1044  size_t nunique = stats_support_sizes.size();
                                                                                                                                                          +
                                                                                                                                                          1045 
                                                                                                                                                          +
                                                                                                                                                          1046  for (size_t l = 0u; l < nunique; ++l)
                                                                                                                                                          1047  {
                                                                                                                                                          -
                                                                                                                                                          1048  printf_barry(" - %s\n", cn.c_str());
                                                                                                                                                          -
                                                                                                                                                          1049  }
                                                                                                                                                          +
                                                                                                                                                          1048 
                                                                                                                                                          +
                                                                                                                                                          1049  printf_barry("% 5li ", l);
                                                                                                                                                          1050 
                                                                                                                                                          -
                                                                                                                                                          1051  if (this->nrules() > 0u)
                                                                                                                                                          -
                                                                                                                                                          1052  {
                                                                                                                                                          -
                                                                                                                                                          1053  printf_barry("Model rules (%li) :\n", this->nrules());
                                                                                                                                                          -
                                                                                                                                                          1054 
                                                                                                                                                          -
                                                                                                                                                          1055  for (auto & rn : rules->get_names())
                                                                                                                                                          -
                                                                                                                                                          1056  {
                                                                                                                                                          -
                                                                                                                                                          1057  printf_barry(" - %s\n", rn.c_str());
                                                                                                                                                          -
                                                                                                                                                          1058  }
                                                                                                                                                          -
                                                                                                                                                          1059  }
                                                                                                                                                          -
                                                                                                                                                          1060 
                                                                                                                                                          -
                                                                                                                                                          1061  if (this->nrules_dyn() > 0u)
                                                                                                                                                          -
                                                                                                                                                          1062  {
                                                                                                                                                          -
                                                                                                                                                          1063  printf_barry("Model rules dyn (%li):\n", this->nrules_dyn());
                                                                                                                                                          -
                                                                                                                                                          1064 
                                                                                                                                                          -
                                                                                                                                                          1065  for (auto & rn : rules_dyn->get_names())
                                                                                                                                                          -
                                                                                                                                                          1066  {
                                                                                                                                                          -
                                                                                                                                                          1067  printf_barry(" - %s\n", rn.c_str());
                                                                                                                                                          -
                                                                                                                                                          1068  }
                                                                                                                                                          -
                                                                                                                                                          1069  }
                                                                                                                                                          -
                                                                                                                                                          1070 
                                                                                                                                                          -
                                                                                                                                                          1071  return;
                                                                                                                                                          +
                                                                                                                                                          1051  printf_barry("counts: %.0f motif: ", stats_support[
                                                                                                                                                          +
                                                                                                                                                          1052  stats_support_sizes_acc[l] * (k + 1u)
                                                                                                                                                          +
                                                                                                                                                          1053  // l * (k + 1u)
                                                                                                                                                          +
                                                                                                                                                          1054  ]);
                                                                                                                                                          +
                                                                                                                                                          1055 
                                                                                                                                                          +
                                                                                                                                                          1056  for (size_t j = 0u; j < k; ++j)
                                                                                                                                                          +
                                                                                                                                                          1057  {
                                                                                                                                                          +
                                                                                                                                                          1058  printf_barry(
                                                                                                                                                          +
                                                                                                                                                          1059  "%.2f, ",
                                                                                                                                                          +
                                                                                                                                                          1060  stats_support[
                                                                                                                                                          +
                                                                                                                                                          1061  stats_support_sizes_acc[l] * (k + 1u) + j + 1u
                                                                                                                                                          +
                                                                                                                                                          1062  ]);
                                                                                                                                                          +
                                                                                                                                                          1063  }
                                                                                                                                                          +
                                                                                                                                                          1064 
                                                                                                                                                          +
                                                                                                                                                          1065  printf_barry("\n");
                                                                                                                                                          +
                                                                                                                                                          1066 
                                                                                                                                                          +
                                                                                                                                                          1067  }
                                                                                                                                                          +
                                                                                                                                                          1068 
                                                                                                                                                          +
                                                                                                                                                          1069  return;
                                                                                                                                                          +
                                                                                                                                                          1070 
                                                                                                                                                          +
                                                                                                                                                          1071 }
                                                                                                                                                          1072 
                                                                                                                                                          -
                                                                                                                                                          1073 }
                                                                                                                                                          -
                                                                                                                                                          1074 
                                                                                                                                                          -
                                                                                                                                                          1075 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1076 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: size() const noexcept
                                                                                                                                                          -
                                                                                                                                                          1077 {
                                                                                                                                                          -
                                                                                                                                                          1078  // INITIALIZED()
                                                                                                                                                          -
                                                                                                                                                          1079  return this->stats_target.size();
                                                                                                                                                          -
                                                                                                                                                          1080 
                                                                                                                                                          -
                                                                                                                                                          1081 }
                                                                                                                                                          -
                                                                                                                                                          1082 
                                                                                                                                                          -
                                                                                                                                                          1083 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1084 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: size_unique() const noexcept
                                                                                                                                                          -
                                                                                                                                                          1085 {
                                                                                                                                                          -
                                                                                                                                                          1086 
                                                                                                                                                          -
                                                                                                                                                          1087  // INITIALIZED()
                                                                                                                                                          -
                                                                                                                                                          1088  return this->stats_support.size();
                                                                                                                                                          -
                                                                                                                                                          1089 
                                                                                                                                                          -
                                                                                                                                                          1090 }
                                                                                                                                                          -
                                                                                                                                                          1091 
                                                                                                                                                          -
                                                                                                                                                          1092 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1093 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: nterms() const noexcept
                                                                                                                                                          -
                                                                                                                                                          1094 {
                                                                                                                                                          +
                                                                                                                                                          1073 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1074 inline void Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::print() const
                                                                                                                                                          +
                                                                                                                                                          1075 {
                                                                                                                                                          +
                                                                                                                                                          1076 
                                                                                                                                                          +
                                                                                                                                                          1077  // Relevant information:
                                                                                                                                                          +
                                                                                                                                                          1078  // - Number of arrays involved
                                                                                                                                                          +
                                                                                                                                                          1079  // - Size of the support
                                                                                                                                                          +
                                                                                                                                                          1080  // - Terms involved
                                                                                                                                                          +
                                                                                                                                                          1081 
                                                                                                                                                          +
                                                                                                                                                          1082  int min_v = std::numeric_limits<int>::max();
                                                                                                                                                          +
                                                                                                                                                          1083  int max_v = 0;
                                                                                                                                                          +
                                                                                                                                                          1084 
                                                                                                                                                          +
                                                                                                                                                          1085  for (const auto & stat : this->stats_support_sizes)
                                                                                                                                                          +
                                                                                                                                                          1086  {
                                                                                                                                                          +
                                                                                                                                                          1087 
                                                                                                                                                          +
                                                                                                                                                          1088  if (static_cast<int>(stat) > max_v)
                                                                                                                                                          +
                                                                                                                                                          1089  max_v = static_cast<int>(stat);
                                                                                                                                                          +
                                                                                                                                                          1090 
                                                                                                                                                          +
                                                                                                                                                          1091  if (static_cast<int>(stat) < min_v)
                                                                                                                                                          +
                                                                                                                                                          1092  min_v = static_cast<int>(stat);
                                                                                                                                                          +
                                                                                                                                                          1093 
                                                                                                                                                          +
                                                                                                                                                          1094  }
                                                                                                                                                          1095 
                                                                                                                                                          -
                                                                                                                                                          1096  if (transform_model_fun)
                                                                                                                                                          -
                                                                                                                                                          1097  return transform_model_term_names.size();
                                                                                                                                                          -
                                                                                                                                                          1098  else
                                                                                                                                                          -
                                                                                                                                                          1099  return this->counters->size();
                                                                                                                                                          -
                                                                                                                                                          1100 
                                                                                                                                                          -
                                                                                                                                                          1101 }
                                                                                                                                                          -
                                                                                                                                                          1102 
                                                                                                                                                          -
                                                                                                                                                          1103 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1104 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: nrules() const noexcept
                                                                                                                                                          -
                                                                                                                                                          1105 {
                                                                                                                                                          -
                                                                                                                                                          1106 
                                                                                                                                                          -
                                                                                                                                                          1107  return this->rules->size();
                                                                                                                                                          -
                                                                                                                                                          1108 
                                                                                                                                                          -
                                                                                                                                                          1109 }
                                                                                                                                                          -
                                                                                                                                                          1110 
                                                                                                                                                          -
                                                                                                                                                          1111 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1112 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: nrules_dyn() const noexcept
                                                                                                                                                          -
                                                                                                                                                          1113 {
                                                                                                                                                          -
                                                                                                                                                          1114 
                                                                                                                                                          -
                                                                                                                                                          1115  return this->rules_dyn->size();
                                                                                                                                                          -
                                                                                                                                                          1116 
                                                                                                                                                          -
                                                                                                                                                          1117 }
                                                                                                                                                          -
                                                                                                                                                          1118 
                                                                                                                                                          -
                                                                                                                                                          1119 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1120 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: support_size() const noexcept
                                                                                                                                                          -
                                                                                                                                                          1121 {
                                                                                                                                                          -
                                                                                                                                                          1122 
                                                                                                                                                          -
                                                                                                                                                          1123  // INITIALIZED()
                                                                                                                                                          -
                                                                                                                                                          1124  size_t tot = 0u;
                                                                                                                                                          -
                                                                                                                                                          1125  for (auto& a : stats_support)
                                                                                                                                                          -
                                                                                                                                                          1126  tot += a.size();
                                                                                                                                                          -
                                                                                                                                                          1127 
                                                                                                                                                          -
                                                                                                                                                          1128  return tot;
                                                                                                                                                          +
                                                                                                                                                          1096  // The vectors in the support reflec the size of nterms x entries
                                                                                                                                                          +
                                                                                                                                                          1097  max_v /= static_cast<int>(nterms() + 1);
                                                                                                                                                          +
                                                                                                                                                          1098  min_v /= static_cast<int>(nterms() + 1);
                                                                                                                                                          +
                                                                                                                                                          1099 
                                                                                                                                                          +
                                                                                                                                                          1100  printf_barry("Num. of Arrays : %li\n", this->size());
                                                                                                                                                          +
                                                                                                                                                          1101  printf_barry("Support size : %li\n", this->size_unique());
                                                                                                                                                          +
                                                                                                                                                          1102  printf_barry("Support size range : [%i, %i]\n", min_v, max_v);
                                                                                                                                                          +
                                                                                                                                                          1103  printf_barry("Transform. Fun. : %s\n", transform_model_fun ? "yes": "no");
                                                                                                                                                          +
                                                                                                                                                          1104  printf_barry("Model terms (%li) :\n", this->nterms());
                                                                                                                                                          +
                                                                                                                                                          1105  for (auto & cn : this->colnames())
                                                                                                                                                          +
                                                                                                                                                          1106  {
                                                                                                                                                          +
                                                                                                                                                          1107  printf_barry(" - %s\n", cn.c_str());
                                                                                                                                                          +
                                                                                                                                                          1108  }
                                                                                                                                                          +
                                                                                                                                                          1109 
                                                                                                                                                          +
                                                                                                                                                          1110  if (this->nrules() > 0u)
                                                                                                                                                          +
                                                                                                                                                          1111  {
                                                                                                                                                          +
                                                                                                                                                          1112  printf_barry("Model rules (%li) :\n", this->nrules());
                                                                                                                                                          +
                                                                                                                                                          1113 
                                                                                                                                                          +
                                                                                                                                                          1114  for (auto & rn : rules->get_names())
                                                                                                                                                          +
                                                                                                                                                          1115  {
                                                                                                                                                          +
                                                                                                                                                          1116  printf_barry(" - %s\n", rn.c_str());
                                                                                                                                                          +
                                                                                                                                                          1117  }
                                                                                                                                                          +
                                                                                                                                                          1118  }
                                                                                                                                                          +
                                                                                                                                                          1119 
                                                                                                                                                          +
                                                                                                                                                          1120  if (this->nrules_dyn() > 0u)
                                                                                                                                                          +
                                                                                                                                                          1121  {
                                                                                                                                                          +
                                                                                                                                                          1122  printf_barry("Model rules dyn (%li):\n", this->nrules_dyn());
                                                                                                                                                          +
                                                                                                                                                          1123 
                                                                                                                                                          +
                                                                                                                                                          1124  for (auto & rn : rules_dyn->get_names())
                                                                                                                                                          +
                                                                                                                                                          1125  {
                                                                                                                                                          +
                                                                                                                                                          1126  printf_barry(" - %s\n", rn.c_str());
                                                                                                                                                          +
                                                                                                                                                          1127  }
                                                                                                                                                          +
                                                                                                                                                          1128  }
                                                                                                                                                          1129 
                                                                                                                                                          -
                                                                                                                                                          1130 }
                                                                                                                                                          +
                                                                                                                                                          1130  return;
                                                                                                                                                          1131 
                                                                                                                                                          -
                                                                                                                                                          1132 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1133 inline std::vector< std::string > Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: colnames() const
                                                                                                                                                          -
                                                                                                                                                          1134 {
                                                                                                                                                          -
                                                                                                                                                          1135 
                                                                                                                                                          -
                                                                                                                                                          1136  if (transform_model_fun)
                                                                                                                                                          -
                                                                                                                                                          1137  return transform_model_term_names;
                                                                                                                                                          -
                                                                                                                                                          1138  else
                                                                                                                                                          -
                                                                                                                                                          1139  return counters->get_names();
                                                                                                                                                          -
                                                                                                                                                          1140 
                                                                                                                                                          -
                                                                                                                                                          1141 }
                                                                                                                                                          -
                                                                                                                                                          1142 
                                                                                                                                                          -
                                                                                                                                                          1143 template <
                                                                                                                                                          -
                                                                                                                                                          1144  typename Array_Type,
                                                                                                                                                          -
                                                                                                                                                          1145  typename Data_Counter_Type,
                                                                                                                                                          -
                                                                                                                                                          1146  typename Data_Rule_Type,
                                                                                                                                                          -
                                                                                                                                                          1147  typename Data_Rule_Dyn_Type
                                                                                                                                                          -
                                                                                                                                                          1148  >
                                                                                                                                                          -
                                                                                                                                                          1149 inline Array_Type
                                                                                                                                                          -
                                                                                                                                                          1150 Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::sample(
                                                                                                                                                          -
                                                                                                                                                          1151  const size_t & i,
                                                                                                                                                          -
                                                                                                                                                          1152  const std::vector<double> & params
                                                                                                                                                          -
                                                                                                                                                          1153 ) {
                                                                                                                                                          +
                                                                                                                                                          1132 }
                                                                                                                                                          +
                                                                                                                                                          1133 
                                                                                                                                                          +
                                                                                                                                                          1134 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1135 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: size() const noexcept
                                                                                                                                                          +
                                                                                                                                                          1136 {
                                                                                                                                                          +
                                                                                                                                                          1137  // INITIALIZED()
                                                                                                                                                          +
                                                                                                                                                          1138  return this->stats_target.size();
                                                                                                                                                          +
                                                                                                                                                          1139 
                                                                                                                                                          +
                                                                                                                                                          1140 }
                                                                                                                                                          +
                                                                                                                                                          1141 
                                                                                                                                                          +
                                                                                                                                                          1142 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1143 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: size_unique() const noexcept
                                                                                                                                                          +
                                                                                                                                                          1144 {
                                                                                                                                                          +
                                                                                                                                                          1145 
                                                                                                                                                          +
                                                                                                                                                          1146  // INITIALIZED()
                                                                                                                                                          +
                                                                                                                                                          1147  return this->stats_support_sizes.size();
                                                                                                                                                          +
                                                                                                                                                          1148 
                                                                                                                                                          +
                                                                                                                                                          1149 }
                                                                                                                                                          +
                                                                                                                                                          1150 
                                                                                                                                                          +
                                                                                                                                                          1151 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1152 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: nterms() const noexcept
                                                                                                                                                          +
                                                                                                                                                          1153 {
                                                                                                                                                          1154 
                                                                                                                                                          -
                                                                                                                                                          1155  // Are we recording this?
                                                                                                                                                          -
                                                                                                                                                          1156  if (!this->with_pset)
                                                                                                                                                          -
                                                                                                                                                          1157  throw std::logic_error("Sampling is only available when store_pset() is active.");
                                                                                                                                                          -
                                                                                                                                                          1158 
                                                                                                                                                          -
                                                                                                                                                          1159  if (i >= arrays2support.size())
                                                                                                                                                          -
                                                                                                                                                          1160  throw std::range_error("The requested support is out of range");
                                                                                                                                                          +
                                                                                                                                                          1155  if (transform_model_fun)
                                                                                                                                                          +
                                                                                                                                                          1156  return transform_model_term_names.size();
                                                                                                                                                          +
                                                                                                                                                          1157  else
                                                                                                                                                          +
                                                                                                                                                          1158  return this->counters->size();
                                                                                                                                                          +
                                                                                                                                                          1159 
                                                                                                                                                          +
                                                                                                                                                          1160 }
                                                                                                                                                          1161 
                                                                                                                                                          -
                                                                                                                                                          1162  // Getting the index
                                                                                                                                                          -
                                                                                                                                                          1163  size_t a = arrays2support[i];
                                                                                                                                                          -
                                                                                                                                                          1164 
                                                                                                                                                          -
                                                                                                                                                          1165  // Generating a random
                                                                                                                                                          -
                                                                                                                                                          1166  std::uniform_real_distribution<> urand(0, 1);
                                                                                                                                                          -
                                                                                                                                                          1167  double r = urand(*rengine);
                                                                                                                                                          -
                                                                                                                                                          1168  double cumprob = 0.0;
                                                                                                                                                          +
                                                                                                                                                          1162 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1163 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: nrules() const noexcept
                                                                                                                                                          +
                                                                                                                                                          1164 {
                                                                                                                                                          +
                                                                                                                                                          1165 
                                                                                                                                                          +
                                                                                                                                                          1166  return this->rules->size();
                                                                                                                                                          +
                                                                                                                                                          1167 
                                                                                                                                                          +
                                                                                                                                                          1168 }
                                                                                                                                                          1169 
                                                                                                                                                          -
                                                                                                                                                          1170  size_t k = params.size();
                                                                                                                                                          -
                                                                                                                                                          1171 
                                                                                                                                                          -
                                                                                                                                                          1172  // Sampling an array
                                                                                                                                                          -
                                                                                                                                                          1173  size_t j = 0u;
                                                                                                                                                          -
                                                                                                                                                          1174  std::vector< double > & probs = pset_probs[a];
                                                                                                                                                          -
                                                                                                                                                          1175  if ((probs.size() > 0u) && (vec_equal_approx(params, params_last[a])))
                                                                                                                                                          -
                                                                                                                                                          1176  // If precomputed, then no need to recalc support
                                                                                                                                                          -
                                                                                                                                                          1177  {
                                                                                                                                                          -
                                                                                                                                                          1178 
                                                                                                                                                          -
                                                                                                                                                          1179  while (cumprob < r)
                                                                                                                                                          -
                                                                                                                                                          1180  cumprob += probs[j++];
                                                                                                                                                          +
                                                                                                                                                          1170 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1171 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: nrules_dyn() const noexcept
                                                                                                                                                          +
                                                                                                                                                          1172 {
                                                                                                                                                          +
                                                                                                                                                          1173 
                                                                                                                                                          +
                                                                                                                                                          1174  return this->rules_dyn->size();
                                                                                                                                                          +
                                                                                                                                                          1175 
                                                                                                                                                          +
                                                                                                                                                          1176 }
                                                                                                                                                          +
                                                                                                                                                          1177 
                                                                                                                                                          +
                                                                                                                                                          1178 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1179 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: support_size() const noexcept
                                                                                                                                                          +
                                                                                                                                                          1180 {
                                                                                                                                                          1181 
                                                                                                                                                          -
                                                                                                                                                          1182  if (j > 0u)
                                                                                                                                                          -
                                                                                                                                                          1183  j--;
                                                                                                                                                          -
                                                                                                                                                          1184 
                                                                                                                                                          -
                                                                                                                                                          1185  } else {
                                                                                                                                                          -
                                                                                                                                                          1186 
                                                                                                                                                          -
                                                                                                                                                          1187  probs.resize(pset_arrays[a].size());
                                                                                                                                                          -
                                                                                                                                                          1188  std::vector< double > temp_stats(params.size());
                                                                                                                                                          -
                                                                                                                                                          1189  const std::vector< double > & stats = pset_stats[a];
                                                                                                                                                          -
                                                                                                                                                          1190 
                                                                                                                                                          -
                                                                                                                                                          1191  int i_matches = -1;
                                                                                                                                                          -
                                                                                                                                                          1192  for (size_t array = 0u; array < probs.size(); ++array)
                                                                                                                                                          -
                                                                                                                                                          1193  {
                                                                                                                                                          -
                                                                                                                                                          1194 
                                                                                                                                                          -
                                                                                                                                                          1195  // Filling out the parameters
                                                                                                                                                          -
                                                                                                                                                          1196  for (auto p = 0u; p < params.size(); ++p)
                                                                                                                                                          -
                                                                                                                                                          1197  temp_stats[p] = stats[array * k + p];
                                                                                                                                                          -
                                                                                                                                                          1198 
                                                                                                                                                          -
                                                                                                                                                          1199  probs[array] = this->likelihood(params, temp_stats, i, false);
                                                                                                                                                          -
                                                                                                                                                          1200  cumprob += probs[array];
                                                                                                                                                          -
                                                                                                                                                          1201 
                                                                                                                                                          -
                                                                                                                                                          1202  if (i_matches == -1 && cumprob >= r)
                                                                                                                                                          -
                                                                                                                                                          1203  i_matches = array;
                                                                                                                                                          -
                                                                                                                                                          1204  }
                                                                                                                                                          -
                                                                                                                                                          1205 
                                                                                                                                                          -
                                                                                                                                                          1206  #ifdef BARRY_DEBUG
                                                                                                                                                          -
                                                                                                                                                          1207  if (i_matches < 0)
                                                                                                                                                          -
                                                                                                                                                          1208  throw std::logic_error(
                                                                                                                                                          -
                                                                                                                                                          1209  std::string(
                                                                                                                                                          -
                                                                                                                                                          1210  "Something went wrong when sampling from a different set of.") +
                                                                                                                                                          -
                                                                                                                                                          1211  std::string("parameters. Please report this bug: ") +
                                                                                                                                                          -
                                                                                                                                                          1212  std::string(" cumprob: ") + std::to_string(cumprob) +
                                                                                                                                                          -
                                                                                                                                                          1213  std::string(" r: ") + std::to_string(r)
                                                                                                                                                          -
                                                                                                                                                          1214  );
                                                                                                                                                          -
                                                                                                                                                          1215  #endif
                                                                                                                                                          -
                                                                                                                                                          1216 
                                                                                                                                                          -
                                                                                                                                                          1217  j = i_matches;
                                                                                                                                                          -
                                                                                                                                                          1218 
                                                                                                                                                          -
                                                                                                                                                          1219  }
                                                                                                                                                          -
                                                                                                                                                          1220 
                                                                                                                                                          -
                                                                                                                                                          1221  #ifdef BARRY_DEBUG
                                                                                                                                                          -
                                                                                                                                                          1222  return this->pset_arrays.at(a).at(j);
                                                                                                                                                          -
                                                                                                                                                          1223  #else
                                                                                                                                                          -
                                                                                                                                                          1224  return this->pset_arrays[a][j];
                                                                                                                                                          -
                                                                                                                                                          1225  #endif
                                                                                                                                                          -
                                                                                                                                                          1226 
                                                                                                                                                          -
                                                                                                                                                          1227 }
                                                                                                                                                          -
                                                                                                                                                          1228 
                                                                                                                                                          -
                                                                                                                                                          1229 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1230 inline Array_Type Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: sample(
                                                                                                                                                          -
                                                                                                                                                          1231  const Array_Type & Array_,
                                                                                                                                                          -
                                                                                                                                                          1232  const std::vector<double> & params
                                                                                                                                                          -
                                                                                                                                                          1233 ) {
                                                                                                                                                          -
                                                                                                                                                          1234 
                                                                                                                                                          -
                                                                                                                                                          1235  // Are we recording this?
                                                                                                                                                          -
                                                                                                                                                          1236  if (!this->with_pset)
                                                                                                                                                          -
                                                                                                                                                          1237  throw std::logic_error("Sampling is only available when store_pset() is active.");
                                                                                                                                                          +
                                                                                                                                                          1182  // INITIALIZED()
                                                                                                                                                          +
                                                                                                                                                          1183  return stats_support_sizes_acc.back();
                                                                                                                                                          +
                                                                                                                                                          1184  // size_t tot = 0u;
                                                                                                                                                          +
                                                                                                                                                          1185  // for (auto& a : stats_support)
                                                                                                                                                          +
                                                                                                                                                          1186  // tot += a.size();
                                                                                                                                                          +
                                                                                                                                                          1187 
                                                                                                                                                          +
                                                                                                                                                          1188  // return tot;
                                                                                                                                                          +
                                                                                                                                                          1189 
                                                                                                                                                          +
                                                                                                                                                          1190 }
                                                                                                                                                          +
                                                                                                                                                          1191 
                                                                                                                                                          +
                                                                                                                                                          1192 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1193 inline std::vector< std::string > Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: colnames() const
                                                                                                                                                          +
                                                                                                                                                          1194 {
                                                                                                                                                          +
                                                                                                                                                          1195 
                                                                                                                                                          +
                                                                                                                                                          1196  if (transform_model_fun)
                                                                                                                                                          +
                                                                                                                                                          1197  return transform_model_term_names;
                                                                                                                                                          +
                                                                                                                                                          1198  else
                                                                                                                                                          +
                                                                                                                                                          1199  return counters->get_names();
                                                                                                                                                          +
                                                                                                                                                          1200 
                                                                                                                                                          +
                                                                                                                                                          1201 }
                                                                                                                                                          +
                                                                                                                                                          1202 
                                                                                                                                                          +
                                                                                                                                                          1203 template <
                                                                                                                                                          +
                                                                                                                                                          1204  typename Array_Type,
                                                                                                                                                          +
                                                                                                                                                          1205  typename Data_Counter_Type,
                                                                                                                                                          +
                                                                                                                                                          1206  typename Data_Rule_Type,
                                                                                                                                                          +
                                                                                                                                                          1207  typename Data_Rule_Dyn_Type
                                                                                                                                                          +
                                                                                                                                                          1208  >
                                                                                                                                                          +
                                                                                                                                                          1209 inline Array_Type
                                                                                                                                                          +
                                                                                                                                                          1210 Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::sample(
                                                                                                                                                          +
                                                                                                                                                          1211  const size_t & i,
                                                                                                                                                          +
                                                                                                                                                          1212  const std::vector<double> & params
                                                                                                                                                          +
                                                                                                                                                          1213 ) {
                                                                                                                                                          +
                                                                                                                                                          1214 
                                                                                                                                                          +
                                                                                                                                                          1215  // Are we recording this?
                                                                                                                                                          +
                                                                                                                                                          1216  if (!this->with_pset)
                                                                                                                                                          +
                                                                                                                                                          1217  throw std::logic_error("Sampling is only available when store_pset() is active.");
                                                                                                                                                          +
                                                                                                                                                          1218 
                                                                                                                                                          +
                                                                                                                                                          1219  if (i >= arrays2support.size())
                                                                                                                                                          +
                                                                                                                                                          1220  throw std::range_error("The requested support is out of range");
                                                                                                                                                          +
                                                                                                                                                          1221 
                                                                                                                                                          +
                                                                                                                                                          1222  // Getting the index
                                                                                                                                                          +
                                                                                                                                                          1223  size_t a = arrays2support[i];
                                                                                                                                                          +
                                                                                                                                                          1224 
                                                                                                                                                          +
                                                                                                                                                          1225  // Generating a random
                                                                                                                                                          +
                                                                                                                                                          1226  std::uniform_real_distribution<> urand(0, 1);
                                                                                                                                                          +
                                                                                                                                                          1227  double r = urand(*rengine);
                                                                                                                                                          +
                                                                                                                                                          1228  double cumprob = 0.0;
                                                                                                                                                          +
                                                                                                                                                          1229 
                                                                                                                                                          +
                                                                                                                                                          1230  size_t k = params.size();
                                                                                                                                                          +
                                                                                                                                                          1231 
                                                                                                                                                          +
                                                                                                                                                          1232  // Sampling an array
                                                                                                                                                          +
                                                                                                                                                          1233  size_t j = 0u;
                                                                                                                                                          +
                                                                                                                                                          1234  std::vector< double > & probs = pset_probs[a];
                                                                                                                                                          +
                                                                                                                                                          1235  if ((probs.size() > 0u) && (vec_equal_approx(params, params_last[a])))
                                                                                                                                                          +
                                                                                                                                                          1236  // If precomputed, then no need to recalc support
                                                                                                                                                          +
                                                                                                                                                          1237  {
                                                                                                                                                          1238 
                                                                                                                                                          -
                                                                                                                                                          1239  size_t i;
                                                                                                                                                          -
                                                                                                                                                          1240 
                                                                                                                                                          -
                                                                                                                                                          1241  // If the data hasn't been analyzed earlier, then we need to compute
                                                                                                                                                          -
                                                                                                                                                          1242  // the support
                                                                                                                                                          -
                                                                                                                                                          1243  std::vector< double > key = counters->gen_hash(Array_);
                                                                                                                                                          -
                                                                                                                                                          1244  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                                                                                          -
                                                                                                                                                          1245  if (locator == keys2support.end())
                                                                                                                                                          -
                                                                                                                                                          1246  {
                                                                                                                                                          -
                                                                                                                                                          1247  // throw std::out_of_range("Sampling from an array that has no support in the model.");
                                                                                                                                                          -
                                                                                                                                                          1248 
                                                                                                                                                          -
                                                                                                                                                          1249  // Adding to the map
                                                                                                                                                          -
                                                                                                                                                          1250  keys2support[key] = stats_support.size();
                                                                                                                                                          -
                                                                                                                                                          1251  stats_support_n_arrays.push_back(1u); // How many elements now
                                                                                                                                                          -
                                                                                                                                                          1252  arrays2support.push_back(stats_support.size()); // Map of the array id to the support
                                                                                                                                                          -
                                                                                                                                                          1253 
                                                                                                                                                          -
                                                                                                                                                          1254  // Computing support using the counters included in the model
                                                                                                                                                          -
                                                                                                                                                          1255  support_fun.reset_array(Array_);
                                                                                                                                                          -
                                                                                                                                                          1256 
                                                                                                                                                          -
                                                                                                                                                          1259  if (with_pset)
                                                                                                                                                          -
                                                                                                                                                          1260  {
                                                                                                                                                          -
                                                                                                                                                          1261 
                                                                                                                                                          -
                                                                                                                                                          1262  // Making space for storing the support
                                                                                                                                                          -
                                                                                                                                                          1263  pset_arrays.resize(pset_arrays.size() + 1u);
                                                                                                                                                          -
                                                                                                                                                          1264  pset_stats.resize(pset_stats.size() + 1u);
                                                                                                                                                          -
                                                                                                                                                          1265  pset_probs.resize(pset_probs.size() + 1u);
                                                                                                                                                          -
                                                                                                                                                          1266 
                                                                                                                                                          -
                                                                                                                                                          1267  try
                                                                                                                                                          -
                                                                                                                                                          1268  {
                                                                                                                                                          -
                                                                                                                                                          1269 
                                                                                                                                                          -
                                                                                                                                                          1270  support_fun.calc(
                                                                                                                                                          -
                                                                                                                                                          1271  &(pset_arrays[pset_arrays.size() - 1u]),
                                                                                                                                                          -
                                                                                                                                                          1272  &(pset_stats[pset_stats.size() - 1u])
                                                                                                                                                          -
                                                                                                                                                          1273  );
                                                                                                                                                          -
                                                                                                                                                          1274 
                                                                                                                                                          -
                                                                                                                                                          1275  }
                                                                                                                                                          -
                                                                                                                                                          1276  catch (const std::exception& e)
                                                                                                                                                          -
                                                                                                                                                          1277  {
                                                                                                                                                          -
                                                                                                                                                          1278 
                                                                                                                                                          -
                                                                                                                                                          1279  printf_barry(
                                                                                                                                                          -
                                                                                                                                                          1280  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                                                                                          -
                                                                                                                                                          1281  );
                                                                                                                                                          -
                                                                                                                                                          1282  printf_barry("with error %s\n", e.what());
                                                                                                                                                          -
                                                                                                                                                          1283  throw std::logic_error("");
                                                                                                                                                          -
                                                                                                                                                          1284 
                                                                                                                                                          -
                                                                                                                                                          1285  }
                                                                                                                                                          -
                                                                                                                                                          1286 
                                                                                                                                                          -
                                                                                                                                                          1287  }
                                                                                                                                                          -
                                                                                                                                                          1288  else
                                                                                                                                                          -
                                                                                                                                                          1289  {
                                                                                                                                                          -
                                                                                                                                                          1290  support_fun.calc();
                                                                                                                                                          -
                                                                                                                                                          1291  }
                                                                                                                                                          -
                                                                                                                                                          1292 
                                                                                                                                                          -
                                                                                                                                                          1293  if (transform_model_fun)
                                                                                                                                                          -
                                                                                                                                                          1294  {
                                                                                                                                                          -
                                                                                                                                                          1295  auto tmpsupport = support_fun.get_counts();
                                                                                                                                                          -
                                                                                                                                                          1296  size_t k = counter_fun.size();
                                                                                                                                                          -
                                                                                                                                                          1297  size_t n = tmpsupport.size() / (k + 1);
                                                                                                                                                          +
                                                                                                                                                          1239  while (cumprob < r)
                                                                                                                                                          +
                                                                                                                                                          1240  cumprob += probs[j++];
                                                                                                                                                          +
                                                                                                                                                          1241 
                                                                                                                                                          +
                                                                                                                                                          1242  if (j > 0u)
                                                                                                                                                          +
                                                                                                                                                          1243  j--;
                                                                                                                                                          +
                                                                                                                                                          1244 
                                                                                                                                                          +
                                                                                                                                                          1245  } else {
                                                                                                                                                          +
                                                                                                                                                          1246 
                                                                                                                                                          +
                                                                                                                                                          1247  probs.resize(pset_arrays[a].size());
                                                                                                                                                          +
                                                                                                                                                          1248  std::vector< double > temp_stats(params.size());
                                                                                                                                                          +
                                                                                                                                                          1249  const std::vector< double > & stats = pset_stats[a];
                                                                                                                                                          +
                                                                                                                                                          1250 
                                                                                                                                                          +
                                                                                                                                                          1251  int i_matches = -1;
                                                                                                                                                          +
                                                                                                                                                          1252  for (size_t array = 0u; array < probs.size(); ++array)
                                                                                                                                                          +
                                                                                                                                                          1253  {
                                                                                                                                                          +
                                                                                                                                                          1254 
                                                                                                                                                          +
                                                                                                                                                          1255  // Filling out the parameters
                                                                                                                                                          +
                                                                                                                                                          1256  for (auto p = 0u; p < params.size(); ++p)
                                                                                                                                                          +
                                                                                                                                                          1257  temp_stats[p] = stats[array * k + p];
                                                                                                                                                          +
                                                                                                                                                          1258 
                                                                                                                                                          +
                                                                                                                                                          1259  probs[array] = this->likelihood(params, temp_stats, i, false);
                                                                                                                                                          +
                                                                                                                                                          1260  cumprob += probs[array];
                                                                                                                                                          +
                                                                                                                                                          1261 
                                                                                                                                                          +
                                                                                                                                                          1262  if (i_matches == -1 && cumprob >= r)
                                                                                                                                                          +
                                                                                                                                                          1263  i_matches = array;
                                                                                                                                                          +
                                                                                                                                                          1264  }
                                                                                                                                                          +
                                                                                                                                                          1265 
                                                                                                                                                          +
                                                                                                                                                          1266  #ifdef BARRY_DEBUG
                                                                                                                                                          +
                                                                                                                                                          1267  if (i_matches < 0)
                                                                                                                                                          +
                                                                                                                                                          1268  throw std::logic_error(
                                                                                                                                                          +
                                                                                                                                                          1269  std::string(
                                                                                                                                                          +
                                                                                                                                                          1270  "Something went wrong when sampling from a different set of.") +
                                                                                                                                                          +
                                                                                                                                                          1271  std::string("parameters. Please report this bug: ") +
                                                                                                                                                          +
                                                                                                                                                          1272  std::string(" cumprob: ") + std::to_string(cumprob) +
                                                                                                                                                          +
                                                                                                                                                          1273  std::string(" r: ") + std::to_string(r)
                                                                                                                                                          +
                                                                                                                                                          1274  );
                                                                                                                                                          +
                                                                                                                                                          1275  #endif
                                                                                                                                                          +
                                                                                                                                                          1276 
                                                                                                                                                          +
                                                                                                                                                          1277  j = i_matches;
                                                                                                                                                          +
                                                                                                                                                          1278 
                                                                                                                                                          +
                                                                                                                                                          1279  }
                                                                                                                                                          +
                                                                                                                                                          1280 
                                                                                                                                                          +
                                                                                                                                                          1281  #ifdef BARRY_DEBUG
                                                                                                                                                          +
                                                                                                                                                          1282  return this->pset_arrays.at(a).at(j);
                                                                                                                                                          +
                                                                                                                                                          1283  #else
                                                                                                                                                          +
                                                                                                                                                          1284  return this->pset_arrays[a][j];
                                                                                                                                                          +
                                                                                                                                                          1285  #endif
                                                                                                                                                          +
                                                                                                                                                          1286 
                                                                                                                                                          +
                                                                                                                                                          1287 }
                                                                                                                                                          +
                                                                                                                                                          1288 
                                                                                                                                                          +
                                                                                                                                                          1289 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1290 inline Array_Type Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: sample(
                                                                                                                                                          +
                                                                                                                                                          1291  const Array_Type & Array_,
                                                                                                                                                          +
                                                                                                                                                          1292  const std::vector<double> & params
                                                                                                                                                          +
                                                                                                                                                          1293 ) {
                                                                                                                                                          +
                                                                                                                                                          1294 
                                                                                                                                                          +
                                                                                                                                                          1295  // Are we recording this?
                                                                                                                                                          +
                                                                                                                                                          1296  if (!this->with_pset)
                                                                                                                                                          +
                                                                                                                                                          1297  throw std::logic_error("Sampling is only available when store_pset() is active.");
                                                                                                                                                          1298 
                                                                                                                                                          -
                                                                                                                                                          1299  std::vector< double > s_new(0u);
                                                                                                                                                          -
                                                                                                                                                          1300  s_new.reserve(tmpsupport.size());
                                                                                                                                                          -
                                                                                                                                                          1301 
                                                                                                                                                          -
                                                                                                                                                          1302  for (size_t i = 0u; i < n; ++i)
                                                                                                                                                          -
                                                                                                                                                          1303  {
                                                                                                                                                          -
                                                                                                                                                          1304 
                                                                                                                                                          -
                                                                                                                                                          1305  // Appending size
                                                                                                                                                          -
                                                                                                                                                          1306  s_new.push_back(tmpsupport[i * (k + 1u)]);
                                                                                                                                                          -
                                                                                                                                                          1307 
                                                                                                                                                          -
                                                                                                                                                          1308  // Applying transformation and adding to the new set
                                                                                                                                                          -
                                                                                                                                                          1309  auto res = transform_model_fun(&tmpsupport[i * (k + 1u) + 1u], k);
                                                                                                                                                          -
                                                                                                                                                          1310  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                                                                                          -
                                                                                                                                                          1311 
                                                                                                                                                          -
                                                                                                                                                          1312  }
                                                                                                                                                          -
                                                                                                                                                          1313 
                                                                                                                                                          -
                                                                                                                                                          1314  stats_support.push_back(s_new);
                                                                                                                                                          -
                                                                                                                                                          1315 
                                                                                                                                                          -
                                                                                                                                                          1316  } else
                                                                                                                                                          -
                                                                                                                                                          1317  stats_support.push_back(support_fun.get_counts());
                                                                                                                                                          -
                                                                                                                                                          1318 
                                                                                                                                                          -
                                                                                                                                                          1319  // Making room for the previous parameters. This will be used to check if
                                                                                                                                                          -
                                                                                                                                                          1320  // the normalizing constant has been updated or not.
                                                                                                                                                          -
                                                                                                                                                          1321  params_last.push_back(stats_target[0u]);
                                                                                                                                                          -
                                                                                                                                                          1322  normalizing_constants.push_back(0.0);
                                                                                                                                                          -
                                                                                                                                                          1323  first_calc_done.push_back(false);
                                                                                                                                                          -
                                                                                                                                                          1324 
                                                                                                                                                          -
                                                                                                                                                          1325  i = arrays2support.size() - 1u;
                                                                                                                                                          -
                                                                                                                                                          1326  } else
                                                                                                                                                          -
                                                                                                                                                          1327  // Retrieving the corresponding position in the support
                                                                                                                                                          -
                                                                                                                                                          1328  i = locator->second;
                                                                                                                                                          -
                                                                                                                                                          1329 
                                                                                                                                                          -
                                                                                                                                                          1330  // Getting the index
                                                                                                                                                          -
                                                                                                                                                          1331  size_t a = arrays2support[i];
                                                                                                                                                          -
                                                                                                                                                          1332 
                                                                                                                                                          -
                                                                                                                                                          1333  // Generating a random
                                                                                                                                                          -
                                                                                                                                                          1334  std::uniform_real_distribution<> urand(0, 1);
                                                                                                                                                          -
                                                                                                                                                          1335  double r = urand(*rengine);
                                                                                                                                                          -
                                                                                                                                                          1336  double cumprob = 0.0;
                                                                                                                                                          -
                                                                                                                                                          1337 
                                                                                                                                                          -
                                                                                                                                                          1338  size_t k = params.size();
                                                                                                                                                          -
                                                                                                                                                          1339 
                                                                                                                                                          -
                                                                                                                                                          1340  // Sampling an array
                                                                                                                                                          -
                                                                                                                                                          1341  size_t j = 0u;
                                                                                                                                                          -
                                                                                                                                                          1342  std::vector< double > & probs = pset_probs[a];
                                                                                                                                                          -
                                                                                                                                                          1343  if ((probs.size() > 0u) && (vec_equal_approx(params, params_last[a])))
                                                                                                                                                          -
                                                                                                                                                          1344  // If precomputed, then no need to recalc support
                                                                                                                                                          -
                                                                                                                                                          1345  {
                                                                                                                                                          -
                                                                                                                                                          1346 
                                                                                                                                                          -
                                                                                                                                                          1347  while (cumprob < r)
                                                                                                                                                          -
                                                                                                                                                          1348  cumprob += probs[j++];
                                                                                                                                                          -
                                                                                                                                                          1349 
                                                                                                                                                          -
                                                                                                                                                          1350  if (j > 0u)
                                                                                                                                                          -
                                                                                                                                                          1351  j--;
                                                                                                                                                          -
                                                                                                                                                          1352 
                                                                                                                                                          -
                                                                                                                                                          1353  } else {
                                                                                                                                                          -
                                                                                                                                                          1354 
                                                                                                                                                          -
                                                                                                                                                          1355  probs.resize(pset_arrays[a].size());
                                                                                                                                                          -
                                                                                                                                                          1356  std::vector< double > temp_stats(params.size());
                                                                                                                                                          -
                                                                                                                                                          1357  const std::vector< double > & stats = pset_stats[a];
                                                                                                                                                          +
                                                                                                                                                          1299  size_t i;
                                                                                                                                                          +
                                                                                                                                                          1300 
                                                                                                                                                          +
                                                                                                                                                          1301  // If the data hasn't been analyzed earlier, then we need to compute
                                                                                                                                                          +
                                                                                                                                                          1302  // the support
                                                                                                                                                          +
                                                                                                                                                          1303  std::vector< double > key = counters->gen_hash(Array_);
                                                                                                                                                          +
                                                                                                                                                          1304  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                                                                                          +
                                                                                                                                                          1305  if (locator == keys2support.end())
                                                                                                                                                          +
                                                                                                                                                          1306  {
                                                                                                                                                          +
                                                                                                                                                          1307  size_t stats_support_size = stats_support.size();
                                                                                                                                                          +
                                                                                                                                                          1308 
                                                                                                                                                          +
                                                                                                                                                          1309  // Adding to the map
                                                                                                                                                          +
                                                                                                                                                          1310  keys2support[key] = stats_support_sizes.size();
                                                                                                                                                          +
                                                                                                                                                          1311  stats_support_n_arrays.push_back(1u); // How many elements now
                                                                                                                                                          +
                                                                                                                                                          1312  arrays2support.push_back(stats_support_sizes.size()); // Map of the array id to the support
                                                                                                                                                          +
                                                                                                                                                          1313 
                                                                                                                                                          +
                                                                                                                                                          1314  // Computing support using the counters included in the model
                                                                                                                                                          +
                                                                                                                                                          1315  support_fun.reset_array(Array_);
                                                                                                                                                          +
                                                                                                                                                          1316 
                                                                                                                                                          +
                                                                                                                                                          1319  if (with_pset)
                                                                                                                                                          +
                                                                                                                                                          1320  {
                                                                                                                                                          +
                                                                                                                                                          1321 
                                                                                                                                                          +
                                                                                                                                                          1322  // Making space for storing the support
                                                                                                                                                          +
                                                                                                                                                          1323  pset_arrays.resize(pset_arrays.size() + 1u);
                                                                                                                                                          +
                                                                                                                                                          1324  pset_stats.resize(pset_stats.size() + 1u);
                                                                                                                                                          +
                                                                                                                                                          1325  pset_probs.resize(pset_probs.size() + 1u);
                                                                                                                                                          +
                                                                                                                                                          1326 
                                                                                                                                                          +
                                                                                                                                                          1327  try
                                                                                                                                                          +
                                                                                                                                                          1328  {
                                                                                                                                                          +
                                                                                                                                                          1329 
                                                                                                                                                          +
                                                                                                                                                          1330  support_fun.calc(
                                                                                                                                                          +
                                                                                                                                                          1331  &(pset_arrays[pset_arrays.size() - 1u]),
                                                                                                                                                          +
                                                                                                                                                          1332  &(pset_stats[pset_stats.size() - 1u])
                                                                                                                                                          +
                                                                                                                                                          1333  );
                                                                                                                                                          +
                                                                                                                                                          1334 
                                                                                                                                                          +
                                                                                                                                                          1335  }
                                                                                                                                                          +
                                                                                                                                                          1336  catch (const std::exception& e)
                                                                                                                                                          +
                                                                                                                                                          1337  {
                                                                                                                                                          +
                                                                                                                                                          1338 
                                                                                                                                                          +
                                                                                                                                                          1339  printf_barry(
                                                                                                                                                          +
                                                                                                                                                          1340  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                                                                                          +
                                                                                                                                                          1341  );
                                                                                                                                                          +
                                                                                                                                                          1342  printf_barry("with error %s\n", e.what());
                                                                                                                                                          +
                                                                                                                                                          1343  throw std::logic_error("");
                                                                                                                                                          +
                                                                                                                                                          1344 
                                                                                                                                                          +
                                                                                                                                                          1345  }
                                                                                                                                                          +
                                                                                                                                                          1346 
                                                                                                                                                          +
                                                                                                                                                          1347  }
                                                                                                                                                          +
                                                                                                                                                          1348  else
                                                                                                                                                          +
                                                                                                                                                          1349  {
                                                                                                                                                          +
                                                                                                                                                          1350  support_fun.calc();
                                                                                                                                                          +
                                                                                                                                                          1351  }
                                                                                                                                                          +
                                                                                                                                                          1352 
                                                                                                                                                          +
                                                                                                                                                          1353  if (transform_model_fun)
                                                                                                                                                          +
                                                                                                                                                          1354  {
                                                                                                                                                          +
                                                                                                                                                          1355  auto tmpsupport = support_fun.get_counts();
                                                                                                                                                          +
                                                                                                                                                          1356  size_t k = counter_fun.size();
                                                                                                                                                          +
                                                                                                                                                          1357  size_t n = tmpsupport.size() / (k + 1);
                                                                                                                                                          1358 
                                                                                                                                                          -
                                                                                                                                                          1359  int i_matches = -1;
                                                                                                                                                          -
                                                                                                                                                          1360  for (size_t array = 0u; array < probs.size(); ++array)
                                                                                                                                                          -
                                                                                                                                                          1361  {
                                                                                                                                                          -
                                                                                                                                                          1362 
                                                                                                                                                          -
                                                                                                                                                          1363  // Filling out the parameters
                                                                                                                                                          -
                                                                                                                                                          1364  for (auto p = 0u; p < params.size(); ++p)
                                                                                                                                                          -
                                                                                                                                                          1365  temp_stats[p] = stats[array * k + p];
                                                                                                                                                          -
                                                                                                                                                          1366 
                                                                                                                                                          -
                                                                                                                                                          1367  probs[array] = this->likelihood(params, temp_stats, i, false);
                                                                                                                                                          -
                                                                                                                                                          1368  cumprob += probs[array];
                                                                                                                                                          -
                                                                                                                                                          1369 
                                                                                                                                                          -
                                                                                                                                                          1370  if (i_matches == -1 && cumprob >= r)
                                                                                                                                                          -
                                                                                                                                                          1371  i_matches = array;
                                                                                                                                                          -
                                                                                                                                                          1372  }
                                                                                                                                                          +
                                                                                                                                                          1359  std::vector< double > s_new(0u);
                                                                                                                                                          +
                                                                                                                                                          1360  s_new.reserve(tmpsupport.size());
                                                                                                                                                          +
                                                                                                                                                          1361 
                                                                                                                                                          +
                                                                                                                                                          1362  for (size_t i = 0u; i < n; ++i)
                                                                                                                                                          +
                                                                                                                                                          1363  {
                                                                                                                                                          +
                                                                                                                                                          1364 
                                                                                                                                                          +
                                                                                                                                                          1365  // Appending size
                                                                                                                                                          +
                                                                                                                                                          1366  s_new.push_back(tmpsupport[i * (k + 1u)]);
                                                                                                                                                          +
                                                                                                                                                          1367 
                                                                                                                                                          +
                                                                                                                                                          1368  // Applying transformation and adding to the new set
                                                                                                                                                          +
                                                                                                                                                          1369  auto res = transform_model_fun(&tmpsupport[i * (k + 1u) + 1u], k);
                                                                                                                                                          +
                                                                                                                                                          1370  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                                                                                          +
                                                                                                                                                          1371 
                                                                                                                                                          +
                                                                                                                                                          1372  }
                                                                                                                                                          1373 
                                                                                                                                                          -
                                                                                                                                                          1374  #ifdef BARRY_DEBUG
                                                                                                                                                          -
                                                                                                                                                          1375  if (i_matches < 0)
                                                                                                                                                          -
                                                                                                                                                          1376  throw std::logic_error(
                                                                                                                                                          -
                                                                                                                                                          1377  std::string(
                                                                                                                                                          -
                                                                                                                                                          1378  "Something went wrong when sampling from a different set of.") +
                                                                                                                                                          -
                                                                                                                                                          1379  std::string("parameters. Please report this bug: ") +
                                                                                                                                                          -
                                                                                                                                                          1380  std::string(" cumprob: ") + std::to_string(cumprob) +
                                                                                                                                                          -
                                                                                                                                                          1381  std::string(" r: ") + std::to_string(r)
                                                                                                                                                          -
                                                                                                                                                          1382  );
                                                                                                                                                          -
                                                                                                                                                          1383  #endif
                                                                                                                                                          -
                                                                                                                                                          1384 
                                                                                                                                                          -
                                                                                                                                                          1385  j = i_matches;
                                                                                                                                                          -
                                                                                                                                                          1386 
                                                                                                                                                          -
                                                                                                                                                          1387  }
                                                                                                                                                          -
                                                                                                                                                          1388 
                                                                                                                                                          -
                                                                                                                                                          1389 
                                                                                                                                                          -
                                                                                                                                                          1390  #ifdef BARRY_DEBUG
                                                                                                                                                          -
                                                                                                                                                          1391  return this->pset_arrays.at(a).at(j);
                                                                                                                                                          -
                                                                                                                                                          1392  #else
                                                                                                                                                          -
                                                                                                                                                          1393  return this->pset_arrays[a][j];
                                                                                                                                                          -
                                                                                                                                                          1394  #endif
                                                                                                                                                          -
                                                                                                                                                          1395 
                                                                                                                                                          -
                                                                                                                                                          1396 }
                                                                                                                                                          -
                                                                                                                                                          1397 
                                                                                                                                                          -
                                                                                                                                                          1398 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1399 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: conditional_prob(
                                                                                                                                                          -
                                                                                                                                                          1400  const Array_Type & Array_,
                                                                                                                                                          -
                                                                                                                                                          1401  const std::vector< double > & params,
                                                                                                                                                          -
                                                                                                                                                          1402  size_t i,
                                                                                                                                                          -
                                                                                                                                                          1403  size_t j
                                                                                                                                                          -
                                                                                                                                                          1404 ) {
                                                                                                                                                          -
                                                                                                                                                          1405 
                                                                                                                                                          -
                                                                                                                                                          1406  // Generating a copy of the array so we can update
                                                                                                                                                          -
                                                                                                                                                          1407  Array_Type A(Array_, true);
                                                                                                                                                          -
                                                                                                                                                          1408 
                                                                                                                                                          -
                                                                                                                                                          1409  // Making sure we add it first
                                                                                                                                                          -
                                                                                                                                                          1410  A.insert_cell(i, j, A.default_val(), true, false);
                                                                                                                                                          -
                                                                                                                                                          1411 
                                                                                                                                                          -
                                                                                                                                                          1412  // Computing the change stats_target
                                                                                                                                                          -
                                                                                                                                                          1413  std::vector< double > tmp_counts;
                                                                                                                                                          -
                                                                                                                                                          1414  tmp_counts.reserve(counters->size());
                                                                                                                                                          -
                                                                                                                                                          1415  for (size_t ii = 0u; ii < counters->size(); ++ii)
                                                                                                                                                          -
                                                                                                                                                          1416  tmp_counts.push_back(counters->operator[](ii).count(A, i, j));
                                                                                                                                                          -
                                                                                                                                                          1417 
                                                                                                                                                          -
                                                                                                                                                          1418  // If there is a transformation function, it needs to be
                                                                                                                                                          -
                                                                                                                                                          1419  // applied before dealing with the likelihood.
                                                                                                                                                          -
                                                                                                                                                          1420  if (transform_model_fun)
                                                                                                                                                          -
                                                                                                                                                          1421  tmp_counts = transform_model_fun(&tmp_counts[0u], tmp_counts.size());
                                                                                                                                                          -
                                                                                                                                                          1422 
                                                                                                                                                          -
                                                                                                                                                          1423  return 1.0/
                                                                                                                                                          -
                                                                                                                                                          1424  (1.0 + std::exp(-vec_inner_prod<double>(
                                                                                                                                                          -
                                                                                                                                                          1425  &params[0u], &tmp_counts[0u], params.size()
                                                                                                                                                          -
                                                                                                                                                          1426  )));
                                                                                                                                                          -
                                                                                                                                                          1427 
                                                                                                                                                          -
                                                                                                                                                          1428 
                                                                                                                                                          -
                                                                                                                                                          1429 }
                                                                                                                                                          -
                                                                                                                                                          1430 
                                                                                                                                                          -
                                                                                                                                                          1431 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1432 inline const std::mt19937 * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_rengine() const {
                                                                                                                                                          -
                                                                                                                                                          1433  return this->rengine;
                                                                                                                                                          -
                                                                                                                                                          1434 }
                                                                                                                                                          +
                                                                                                                                                          1374  for (auto & s : s_new)
                                                                                                                                                          +
                                                                                                                                                          1375  stats_support.push_back(s);
                                                                                                                                                          +
                                                                                                                                                          1376  // stats_support.push_back(s_new);
                                                                                                                                                          +
                                                                                                                                                          1377 
                                                                                                                                                          +
                                                                                                                                                          1378  } else {
                                                                                                                                                          +
                                                                                                                                                          1379  for (auto & s : support_fun.get_counts())
                                                                                                                                                          +
                                                                                                                                                          1380  stats_support.push_back(s);
                                                                                                                                                          +
                                                                                                                                                          1381 
                                                                                                                                                          +
                                                                                                                                                          1382  // stats_support.push_back(support_fun.get_counts());
                                                                                                                                                          +
                                                                                                                                                          1383  }
                                                                                                                                                          +
                                                                                                                                                          1384 
                                                                                                                                                          +
                                                                                                                                                          1385  // Making room for the previous parameters. This will be used to check if
                                                                                                                                                          +
                                                                                                                                                          1386  // the normalizing constant has been updated or not.
                                                                                                                                                          +
                                                                                                                                                          1387  params_last.push_back(stats_target[0u]);
                                                                                                                                                          +
                                                                                                                                                          1388  normalizing_constants.push_back(0.0);
                                                                                                                                                          +
                                                                                                                                                          1389  first_calc_done.push_back(false);
                                                                                                                                                          +
                                                                                                                                                          1390 
                                                                                                                                                          +
                                                                                                                                                          1391  // Incrementing the size of the support set
                                                                                                                                                          +
                                                                                                                                                          1392  if (stats_support_sizes.size() == 0u)
                                                                                                                                                          +
                                                                                                                                                          1393  {
                                                                                                                                                          +
                                                                                                                                                          1394  stats_support_sizes_acc.push_back(0u);
                                                                                                                                                          +
                                                                                                                                                          1395  } else {
                                                                                                                                                          +
                                                                                                                                                          1396  stats_support_sizes_acc.push_back(
                                                                                                                                                          +
                                                                                                                                                          1397  stats_support_sizes.back() +
                                                                                                                                                          +
                                                                                                                                                          1398  stats_support_sizes_acc.back()
                                                                                                                                                          +
                                                                                                                                                          1399  );
                                                                                                                                                          +
                                                                                                                                                          1400  }
                                                                                                                                                          +
                                                                                                                                                          1401 
                                                                                                                                                          +
                                                                                                                                                          1402 
                                                                                                                                                          +
                                                                                                                                                          1403  stats_support_sizes.push_back(
                                                                                                                                                          +
                                                                                                                                                          1404 
                                                                                                                                                          +
                                                                                                                                                          1405  (stats_support.size() - stats_support_size)/
                                                                                                                                                          +
                                                                                                                                                          1406  (counter_fun.size() + 1u)
                                                                                                                                                          +
                                                                                                                                                          1407 
                                                                                                                                                          +
                                                                                                                                                          1408  );
                                                                                                                                                          +
                                                                                                                                                          1409 
                                                                                                                                                          +
                                                                                                                                                          1410 
                                                                                                                                                          +
                                                                                                                                                          1411  i = arrays2support.size() - 1u;
                                                                                                                                                          +
                                                                                                                                                          1412  } else
                                                                                                                                                          +
                                                                                                                                                          1413  // Retrieving the corresponding position in the support
                                                                                                                                                          +
                                                                                                                                                          1414  i = locator->second;
                                                                                                                                                          +
                                                                                                                                                          1415 
                                                                                                                                                          +
                                                                                                                                                          1416  // Getting the index
                                                                                                                                                          +
                                                                                                                                                          1417  size_t a = arrays2support[i];
                                                                                                                                                          +
                                                                                                                                                          1418 
                                                                                                                                                          +
                                                                                                                                                          1419  // Generating a random
                                                                                                                                                          +
                                                                                                                                                          1420  std::uniform_real_distribution<> urand(0, 1);
                                                                                                                                                          +
                                                                                                                                                          1421  double r = urand(*rengine);
                                                                                                                                                          +
                                                                                                                                                          1422  double cumprob = 0.0;
                                                                                                                                                          +
                                                                                                                                                          1423 
                                                                                                                                                          +
                                                                                                                                                          1424  size_t k = params.size();
                                                                                                                                                          +
                                                                                                                                                          1425 
                                                                                                                                                          +
                                                                                                                                                          1426  // Sampling an array
                                                                                                                                                          +
                                                                                                                                                          1427  size_t j = 0u;
                                                                                                                                                          +
                                                                                                                                                          1428  std::vector< double > & probs = pset_probs[a];
                                                                                                                                                          +
                                                                                                                                                          1429  if ((probs.size() > 0u) && (vec_equal_approx(params, params_last[a])))
                                                                                                                                                          +
                                                                                                                                                          1430  // If precomputed, then no need to recalc support
                                                                                                                                                          +
                                                                                                                                                          1431  {
                                                                                                                                                          +
                                                                                                                                                          1432 
                                                                                                                                                          +
                                                                                                                                                          1433  while (cumprob < r)
                                                                                                                                                          +
                                                                                                                                                          1434  cumprob += probs[j++];
                                                                                                                                                          1435 
                                                                                                                                                          -
                                                                                                                                                          1436 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1437 inline Counters<Array_Type,Data_Counter_Type> * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_counters() {
                                                                                                                                                          -
                                                                                                                                                          1438  return this->counters;
                                                                                                                                                          -
                                                                                                                                                          1439 }
                                                                                                                                                          -
                                                                                                                                                          1440 
                                                                                                                                                          -
                                                                                                                                                          1441 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1442 inline Rules<Array_Type,Data_Rule_Type> * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules() {
                                                                                                                                                          -
                                                                                                                                                          1443  return this->rules;
                                                                                                                                                          -
                                                                                                                                                          1444 }
                                                                                                                                                          -
                                                                                                                                                          1445 
                                                                                                                                                          -
                                                                                                                                                          1446 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1447 inline Rules<Array_Type,Data_Rule_Dyn_Type> * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules_dyn() {
                                                                                                                                                          -
                                                                                                                                                          1448  return this->rules_dyn;
                                                                                                                                                          -
                                                                                                                                                          1449 }
                                                                                                                                                          -
                                                                                                                                                          1450 
                                                                                                                                                          -
                                                                                                                                                          1451 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1452 inline Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> *
                                                                                                                                                          -
                                                                                                                                                          1453 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_support_fun() {
                                                                                                                                                          -
                                                                                                                                                          1454  return &this->support_fun;
                                                                                                                                                          -
                                                                                                                                                          1455 }
                                                                                                                                                          -
                                                                                                                                                          1456 
                                                                                                                                                          -
                                                                                                                                                          1457 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1458 inline std::vector< std::vector< double > > * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_stats_target()
                                                                                                                                                          -
                                                                                                                                                          1459 {
                                                                                                                                                          -
                                                                                                                                                          1460  return &stats_target;
                                                                                                                                                          -
                                                                                                                                                          1461 }
                                                                                                                                                          -
                                                                                                                                                          1462 
                                                                                                                                                          -
                                                                                                                                                          1463 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1464 inline std::vector< std::vector< double > > *
                                                                                                                                                          -
                                                                                                                                                          1465 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_stats_support()
                                                                                                                                                          -
                                                                                                                                                          1466 {
                                                                                                                                                          -
                                                                                                                                                          1467  return &stats_support;
                                                                                                                                                          -
                                                                                                                                                          1468 }
                                                                                                                                                          -
                                                                                                                                                          1469 
                                                                                                                                                          -
                                                                                                                                                          1470 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1471 inline std::vector< size_t > *
                                                                                                                                                          -
                                                                                                                                                          1472 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_arrays2support()
                                                                                                                                                          -
                                                                                                                                                          1473 {
                                                                                                                                                          -
                                                                                                                                                          1474  return &arrays2support;
                                                                                                                                                          -
                                                                                                                                                          1475 }
                                                                                                                                                          -
                                                                                                                                                          1476 
                                                                                                                                                          -
                                                                                                                                                          1477 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1478 inline std::vector< std::vector< Array_Type > > *
                                                                                                                                                          -
                                                                                                                                                          1479 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_pset_arrays() {
                                                                                                                                                          -
                                                                                                                                                          1480  return &pset_arrays;
                                                                                                                                                          -
                                                                                                                                                          1481 }
                                                                                                                                                          -
                                                                                                                                                          1482 
                                                                                                                                                          -
                                                                                                                                                          1483 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1484 inline std::vector< std::vector<double> > *
                                                                                                                                                          -
                                                                                                                                                          1485 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_pset_stats() {
                                                                                                                                                          -
                                                                                                                                                          1486  return &pset_stats;
                                                                                                                                                          -
                                                                                                                                                          1487 }
                                                                                                                                                          -
                                                                                                                                                          1488 
                                                                                                                                                          -
                                                                                                                                                          1489 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1490 inline std::vector< std::vector<double> > *
                                                                                                                                                          -
                                                                                                                                                          1491 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_pset_probs() {
                                                                                                                                                          -
                                                                                                                                                          1492  return &pset_probs;
                                                                                                                                                          -
                                                                                                                                                          1493 }
                                                                                                                                                          +
                                                                                                                                                          1436  if (j > 0u)
                                                                                                                                                          +
                                                                                                                                                          1437  j--;
                                                                                                                                                          +
                                                                                                                                                          1438 
                                                                                                                                                          +
                                                                                                                                                          1439  } else {
                                                                                                                                                          +
                                                                                                                                                          1440 
                                                                                                                                                          +
                                                                                                                                                          1441  probs.resize(pset_arrays[a].size());
                                                                                                                                                          +
                                                                                                                                                          1442  std::vector< double > temp_stats(params.size());
                                                                                                                                                          +
                                                                                                                                                          1443  const std::vector< double > & stats = pset_stats[a];
                                                                                                                                                          +
                                                                                                                                                          1444 
                                                                                                                                                          +
                                                                                                                                                          1445  int i_matches = -1;
                                                                                                                                                          +
                                                                                                                                                          1446  for (size_t array = 0u; array < probs.size(); ++array)
                                                                                                                                                          +
                                                                                                                                                          1447  {
                                                                                                                                                          +
                                                                                                                                                          1448 
                                                                                                                                                          +
                                                                                                                                                          1449  // Filling out the parameters
                                                                                                                                                          +
                                                                                                                                                          1450  for (auto p = 0u; p < params.size(); ++p)
                                                                                                                                                          +
                                                                                                                                                          1451  temp_stats[p] = stats[array * k + p];
                                                                                                                                                          +
                                                                                                                                                          1452 
                                                                                                                                                          +
                                                                                                                                                          1453  probs[array] = this->likelihood(params, temp_stats, i, false);
                                                                                                                                                          +
                                                                                                                                                          1454  cumprob += probs[array];
                                                                                                                                                          +
                                                                                                                                                          1455 
                                                                                                                                                          +
                                                                                                                                                          1456  if (i_matches == -1 && cumprob >= r)
                                                                                                                                                          +
                                                                                                                                                          1457  i_matches = array;
                                                                                                                                                          +
                                                                                                                                                          1458  }
                                                                                                                                                          +
                                                                                                                                                          1459 
                                                                                                                                                          +
                                                                                                                                                          1460  #ifdef BARRY_DEBUG
                                                                                                                                                          +
                                                                                                                                                          1461  if (i_matches < 0)
                                                                                                                                                          +
                                                                                                                                                          1462  throw std::logic_error(
                                                                                                                                                          +
                                                                                                                                                          1463  std::string(
                                                                                                                                                          +
                                                                                                                                                          1464  "Something went wrong when sampling from a different set of.") +
                                                                                                                                                          +
                                                                                                                                                          1465  std::string("parameters. Please report this bug: ") +
                                                                                                                                                          +
                                                                                                                                                          1466  std::string(" cumprob: ") + std::to_string(cumprob) +
                                                                                                                                                          +
                                                                                                                                                          1467  std::string(" r: ") + std::to_string(r)
                                                                                                                                                          +
                                                                                                                                                          1468  );
                                                                                                                                                          +
                                                                                                                                                          1469  #endif
                                                                                                                                                          +
                                                                                                                                                          1470 
                                                                                                                                                          +
                                                                                                                                                          1471  j = i_matches;
                                                                                                                                                          +
                                                                                                                                                          1472 
                                                                                                                                                          +
                                                                                                                                                          1473  }
                                                                                                                                                          +
                                                                                                                                                          1474 
                                                                                                                                                          +
                                                                                                                                                          1475 
                                                                                                                                                          +
                                                                                                                                                          1476  #ifdef BARRY_DEBUG
                                                                                                                                                          +
                                                                                                                                                          1477  return this->pset_arrays.at(a).at(j);
                                                                                                                                                          +
                                                                                                                                                          1478  #else
                                                                                                                                                          +
                                                                                                                                                          1479  return this->pset_arrays[a][j];
                                                                                                                                                          +
                                                                                                                                                          1480  #endif
                                                                                                                                                          +
                                                                                                                                                          1481 
                                                                                                                                                          +
                                                                                                                                                          1482 }
                                                                                                                                                          +
                                                                                                                                                          1483 
                                                                                                                                                          +
                                                                                                                                                          1484 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1485 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: conditional_prob(
                                                                                                                                                          +
                                                                                                                                                          1486  const Array_Type & Array_,
                                                                                                                                                          +
                                                                                                                                                          1487  const std::vector< double > & params,
                                                                                                                                                          +
                                                                                                                                                          1488  size_t i,
                                                                                                                                                          +
                                                                                                                                                          1489  size_t j
                                                                                                                                                          +
                                                                                                                                                          1490 ) {
                                                                                                                                                          +
                                                                                                                                                          1491 
                                                                                                                                                          +
                                                                                                                                                          1492  // Generating a copy of the array so we can update
                                                                                                                                                          +
                                                                                                                                                          1493  Array_Type A(Array_, true);
                                                                                                                                                          1494 
                                                                                                                                                          -
                                                                                                                                                          1495 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          1496 inline void
                                                                                                                                                          -
                                                                                                                                                          1497 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::set_transform_model(
                                                                                                                                                          -
                                                                                                                                                          1498  std::function<std::vector<double>(double *,size_t)> fun,
                                                                                                                                                          -
                                                                                                                                                          1499  std::vector< std::string > names
                                                                                                                                                          -
                                                                                                                                                          1500  )
                                                                                                                                                          -
                                                                                                                                                          1501 {
                                                                                                                                                          -
                                                                                                                                                          1502 
                                                                                                                                                          -
                                                                                                                                                          1503  if (transform_model_fun)
                                                                                                                                                          -
                                                                                                                                                          1504  throw std::logic_error("A transformation function for the model has already been established.");
                                                                                                                                                          -
                                                                                                                                                          1505 
                                                                                                                                                          -
                                                                                                                                                          1506  transform_model_fun = fun;
                                                                                                                                                          -
                                                                                                                                                          1507  transform_model_term_names = names;
                                                                                                                                                          +
                                                                                                                                                          1495  // Making sure we add it first
                                                                                                                                                          +
                                                                                                                                                          1496  A.insert_cell(i, j, A.default_val(), true, false);
                                                                                                                                                          +
                                                                                                                                                          1497 
                                                                                                                                                          +
                                                                                                                                                          1498  // Computing the change stats_target
                                                                                                                                                          +
                                                                                                                                                          1499  std::vector< double > tmp_counts;
                                                                                                                                                          +
                                                                                                                                                          1500  tmp_counts.reserve(counters->size());
                                                                                                                                                          +
                                                                                                                                                          1501  for (size_t ii = 0u; ii < counters->size(); ++ii)
                                                                                                                                                          +
                                                                                                                                                          1502  tmp_counts.push_back(counters->operator[](ii).count(A, i, j));
                                                                                                                                                          +
                                                                                                                                                          1503 
                                                                                                                                                          +
                                                                                                                                                          1504  // If there is a transformation function, it needs to be
                                                                                                                                                          +
                                                                                                                                                          1505  // applied before dealing with the likelihood.
                                                                                                                                                          +
                                                                                                                                                          1506  if (transform_model_fun)
                                                                                                                                                          +
                                                                                                                                                          1507  tmp_counts = transform_model_fun(&tmp_counts[0u], tmp_counts.size());
                                                                                                                                                          1508 
                                                                                                                                                          -
                                                                                                                                                          1509  size_t k = counters->size();
                                                                                                                                                          -
                                                                                                                                                          1510 
                                                                                                                                                          -
                                                                                                                                                          1511  // Applying over the support
                                                                                                                                                          -
                                                                                                                                                          1512  for (auto & s : stats_support)
                                                                                                                                                          -
                                                                                                                                                          1513  {
                                                                                                                                                          -
                                                                                                                                                          1514 
                                                                                                                                                          -
                                                                                                                                                          1515  // Making room for the new support
                                                                                                                                                          -
                                                                                                                                                          1516  std::vector< double > s_new(0u);
                                                                                                                                                          -
                                                                                                                                                          1517  s_new.reserve(s.size());
                                                                                                                                                          -
                                                                                                                                                          1518 
                                                                                                                                                          -
                                                                                                                                                          1519  size_t n = s.size() / (k + 1u);
                                                                                                                                                          -
                                                                                                                                                          1520 
                                                                                                                                                          -
                                                                                                                                                          1521  // Iterating through the unique sets
                                                                                                                                                          -
                                                                                                                                                          1522  for (size_t i = 0; i < n; ++i)
                                                                                                                                                          -
                                                                                                                                                          1523  {
                                                                                                                                                          -
                                                                                                                                                          1524 
                                                                                                                                                          -
                                                                                                                                                          1525  // Appending size
                                                                                                                                                          -
                                                                                                                                                          1526  s_new.push_back(s[i * (k + 1u)]);
                                                                                                                                                          -
                                                                                                                                                          1527 
                                                                                                                                                          -
                                                                                                                                                          1528  // Applying transformation and adding to the new set
                                                                                                                                                          -
                                                                                                                                                          1529  auto res = transform_model_fun(&s[i * (k + 1u) + 1u], k);
                                                                                                                                                          -
                                                                                                                                                          1530 
                                                                                                                                                          -
                                                                                                                                                          1531  if (res.size() != transform_model_term_names.size())
                                                                                                                                                          -
                                                                                                                                                          1532  throw std::length_error("The transform vector from -transform_model_fun- does not match the size of -transform_model_term_names-.");
                                                                                                                                                          -
                                                                                                                                                          1533 
                                                                                                                                                          -
                                                                                                                                                          1534  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                                                                                          -
                                                                                                                                                          1535 
                                                                                                                                                          -
                                                                                                                                                          1536  }
                                                                                                                                                          -
                                                                                                                                                          1537 
                                                                                                                                                          -
                                                                                                                                                          1538  // Exchanging with the original
                                                                                                                                                          -
                                                                                                                                                          1539  std::swap(s, s_new);
                                                                                                                                                          -
                                                                                                                                                          1540 
                                                                                                                                                          -
                                                                                                                                                          1541  }
                                                                                                                                                          +
                                                                                                                                                          1509  return 1.0/
                                                                                                                                                          +
                                                                                                                                                          1510  (1.0 + std::exp(-vec_inner_prod<double>(
                                                                                                                                                          +
                                                                                                                                                          1511  &params[0u], &tmp_counts[0u], params.size()
                                                                                                                                                          +
                                                                                                                                                          1512  )));
                                                                                                                                                          +
                                                                                                                                                          1513 
                                                                                                                                                          +
                                                                                                                                                          1514 
                                                                                                                                                          +
                                                                                                                                                          1515 }
                                                                                                                                                          +
                                                                                                                                                          1516 
                                                                                                                                                          +
                                                                                                                                                          1517 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1518 inline const std::mt19937 * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_rengine() const {
                                                                                                                                                          +
                                                                                                                                                          1519  return this->rengine;
                                                                                                                                                          +
                                                                                                                                                          1520 }
                                                                                                                                                          +
                                                                                                                                                          1521 
                                                                                                                                                          +
                                                                                                                                                          1522 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1523 inline Counters<Array_Type,Data_Counter_Type> * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_counters() {
                                                                                                                                                          +
                                                                                                                                                          1524  return this->counters;
                                                                                                                                                          +
                                                                                                                                                          1525 }
                                                                                                                                                          +
                                                                                                                                                          1526 
                                                                                                                                                          +
                                                                                                                                                          1527 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1528 inline Rules<Array_Type,Data_Rule_Type> * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules() {
                                                                                                                                                          +
                                                                                                                                                          1529  return this->rules;
                                                                                                                                                          +
                                                                                                                                                          1530 }
                                                                                                                                                          +
                                                                                                                                                          1531 
                                                                                                                                                          +
                                                                                                                                                          1532 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1533 inline Rules<Array_Type,Data_Rule_Dyn_Type> * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules_dyn() {
                                                                                                                                                          +
                                                                                                                                                          1534  return this->rules_dyn;
                                                                                                                                                          +
                                                                                                                                                          1535 }
                                                                                                                                                          +
                                                                                                                                                          1536 
                                                                                                                                                          +
                                                                                                                                                          1537 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1538 inline Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> *
                                                                                                                                                          +
                                                                                                                                                          1539 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_support_fun() {
                                                                                                                                                          +
                                                                                                                                                          1540  return &this->support_fun;
                                                                                                                                                          +
                                                                                                                                                          1541 }
                                                                                                                                                          1542 
                                                                                                                                                          -
                                                                                                                                                          1543  // Applying over the target statistics
                                                                                                                                                          -
                                                                                                                                                          1544  for (auto & s : stats_target)
                                                                                                                                                          -
                                                                                                                                                          1545  s = transform_model_fun(&s[0u], k);
                                                                                                                                                          -
                                                                                                                                                          1546 
                                                                                                                                                          -
                                                                                                                                                          1547  // Checking if there is support included
                                                                                                                                                          -
                                                                                                                                                          1548  if (with_pset)
                                                                                                                                                          -
                                                                                                                                                          1549  {
                                                                                                                                                          -
                                                                                                                                                          1550 
                                                                                                                                                          -
                                                                                                                                                          1551  // Applying it to the support
                                                                                                                                                          -
                                                                                                                                                          1552  for (auto s = 0u; s < pset_arrays.size(); ++s)
                                                                                                                                                          -
                                                                                                                                                          1553  {
                                                                                                                                                          -
                                                                                                                                                          1554  std::vector< double > new_stats;
                                                                                                                                                          +
                                                                                                                                                          1543 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1544 inline std::vector< std::vector< double > > * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_stats_target()
                                                                                                                                                          +
                                                                                                                                                          1545 {
                                                                                                                                                          +
                                                                                                                                                          1546  return &stats_target;
                                                                                                                                                          +
                                                                                                                                                          1547 }
                                                                                                                                                          +
                                                                                                                                                          1548 
                                                                                                                                                          +
                                                                                                                                                          1549 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1550 inline std::vector< double > *
                                                                                                                                                          +
                                                                                                                                                          1551 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_stats_support()
                                                                                                                                                          +
                                                                                                                                                          1552 {
                                                                                                                                                          +
                                                                                                                                                          1553  return &stats_support;
                                                                                                                                                          +
                                                                                                                                                          1554 }
                                                                                                                                                          1555 
                                                                                                                                                          -
                                                                                                                                                          1556  for (auto a = 0u; a < pset_arrays[s].size(); ++a)
                                                                                                                                                          -
                                                                                                                                                          1557  {
                                                                                                                                                          -
                                                                                                                                                          1558  // Computing the transformed version of the data
                                                                                                                                                          -
                                                                                                                                                          1559  auto tmpstats = transform_model_fun(
                                                                                                                                                          -
                                                                                                                                                          1560  &pset_stats[s][a * k], k
                                                                                                                                                          -
                                                                                                                                                          1561  );
                                                                                                                                                          +
                                                                                                                                                          1556 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1557 inline std::vector< size_t > *
                                                                                                                                                          +
                                                                                                                                                          1558 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_arrays2support()
                                                                                                                                                          +
                                                                                                                                                          1559 {
                                                                                                                                                          +
                                                                                                                                                          1560  return &arrays2support;
                                                                                                                                                          +
                                                                                                                                                          1561 }
                                                                                                                                                          1562 
                                                                                                                                                          -
                                                                                                                                                          1563  // Storing the new values
                                                                                                                                                          -
                                                                                                                                                          1564  for (auto p = 0u; p < k; ++p)
                                                                                                                                                          -
                                                                                                                                                          1565  new_stats.push_back(tmpstats[p]);
                                                                                                                                                          -
                                                                                                                                                          1566  }
                                                                                                                                                          -
                                                                                                                                                          1567 
                                                                                                                                                          -
                                                                                                                                                          1568  // Updating the dataset
                                                                                                                                                          -
                                                                                                                                                          1569  std::swap(pset_stats[s], new_stats);
                                                                                                                                                          -
                                                                                                                                                          1570 
                                                                                                                                                          -
                                                                                                                                                          1571  }
                                                                                                                                                          -
                                                                                                                                                          1572 
                                                                                                                                                          -
                                                                                                                                                          1573  }
                                                                                                                                                          +
                                                                                                                                                          1563 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1564 inline std::vector< std::vector< Array_Type > > *
                                                                                                                                                          +
                                                                                                                                                          1565 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_pset_arrays() {
                                                                                                                                                          +
                                                                                                                                                          1566  return &pset_arrays;
                                                                                                                                                          +
                                                                                                                                                          1567 }
                                                                                                                                                          +
                                                                                                                                                          1568 
                                                                                                                                                          +
                                                                                                                                                          1569 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1570 inline std::vector< std::vector<double> > *
                                                                                                                                                          +
                                                                                                                                                          1571 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_pset_stats() {
                                                                                                                                                          +
                                                                                                                                                          1572  return &pset_stats;
                                                                                                                                                          +
                                                                                                                                                          1573 }
                                                                                                                                                          1574 
                                                                                                                                                          -
                                                                                                                                                          1575  // And, resizing the last set of parameters
                                                                                                                                                          -
                                                                                                                                                          1576  for (auto & p : params_last)
                                                                                                                                                          -
                                                                                                                                                          1577  p.resize(transform_model_term_names.size());
                                                                                                                                                          -
                                                                                                                                                          1578 
                                                                                                                                                          -
                                                                                                                                                          1579  return;
                                                                                                                                                          +
                                                                                                                                                          1575 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1576 inline std::vector< std::vector<double> > *
                                                                                                                                                          +
                                                                                                                                                          1577 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_pset_probs() {
                                                                                                                                                          +
                                                                                                                                                          1578  return &pset_probs;
                                                                                                                                                          +
                                                                                                                                                          1579 }
                                                                                                                                                          1580 
                                                                                                                                                          -
                                                                                                                                                          1581 }
                                                                                                                                                          -
                                                                                                                                                          1582 
                                                                                                                                                          -
                                                                                                                                                          1583 #undef MODEL_TEMPLATE
                                                                                                                                                          -
                                                                                                                                                          1584 #undef MODEL_TEMPLATE_ARGS
                                                                                                                                                          -
                                                                                                                                                          1585 #undef MODEL_TYPE
                                                                                                                                                          -
                                                                                                                                                          1586 
                                                                                                                                                          -
                                                                                                                                                          1587 #endif
                                                                                                                                                          +
                                                                                                                                                          1581 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          1582 inline void
                                                                                                                                                          +
                                                                                                                                                          1583 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::set_transform_model(
                                                                                                                                                          +
                                                                                                                                                          1584  std::function<std::vector<double>(double *,size_t)> fun,
                                                                                                                                                          +
                                                                                                                                                          1585  std::vector< std::string > names
                                                                                                                                                          +
                                                                                                                                                          1586  )
                                                                                                                                                          +
                                                                                                                                                          1587 {
                                                                                                                                                          +
                                                                                                                                                          1588 
                                                                                                                                                          +
                                                                                                                                                          1589  if (transform_model_fun)
                                                                                                                                                          +
                                                                                                                                                          1590  throw std::logic_error("A transformation function for the model has already been established.");
                                                                                                                                                          +
                                                                                                                                                          1591 
                                                                                                                                                          +
                                                                                                                                                          1592  transform_model_fun = fun;
                                                                                                                                                          +
                                                                                                                                                          1593  transform_model_term_names = names;
                                                                                                                                                          +
                                                                                                                                                          1594 
                                                                                                                                                          +
                                                                                                                                                          1595  size_t k = counters->size();
                                                                                                                                                          +
                                                                                                                                                          1596 
                                                                                                                                                          +
                                                                                                                                                          1597  auto stats_support_old = stats_support;
                                                                                                                                                          +
                                                                                                                                                          1598 
                                                                                                                                                          +
                                                                                                                                                          1599  // Applying over the support
                                                                                                                                                          +
                                                                                                                                                          1600  for (size_t nsupport = 0u; nsupport < stats_support_sizes.size(); ++nsupport)
                                                                                                                                                          +
                                                                                                                                                          1601  {
                                                                                                                                                          +
                                                                                                                                                          1602 
                                                                                                                                                          +
                                                                                                                                                          1603  // How many observations in the support
                                                                                                                                                          +
                                                                                                                                                          1604  size_t n = stats_support_sizes[nsupport];
                                                                                                                                                          +
                                                                                                                                                          1605 
                                                                                                                                                          +
                                                                                                                                                          1606  // Iterating through each observation in the nsupport'th
                                                                                                                                                          +
                                                                                                                                                          1607  for (size_t i = 0; i < n; ++i)
                                                                                                                                                          +
                                                                                                                                                          1608  {
                                                                                                                                                          +
                                                                                                                                                          1609 
                                                                                                                                                          +
                                                                                                                                                          1610  // Applying transformation and adding to the new set
                                                                                                                                                          +
                                                                                                                                                          1611  auto res = transform_model_fun(
                                                                                                                                                          +
                                                                                                                                                          1612  &stats_support_old[
                                                                                                                                                          +
                                                                                                                                                          1613  stats_support_sizes_acc[nsupport] * (k + 1u) +
                                                                                                                                                          +
                                                                                                                                                          1614  i * (k + 1u) + 1u
                                                                                                                                                          +
                                                                                                                                                          1615  ],
                                                                                                                                                          +
                                                                                                                                                          1616  k
                                                                                                                                                          +
                                                                                                                                                          1617  );
                                                                                                                                                          +
                                                                                                                                                          1618 
                                                                                                                                                          +
                                                                                                                                                          1619  if (res.size() != transform_model_term_names.size())
                                                                                                                                                          +
                                                                                                                                                          1620  throw std::length_error(
                                                                                                                                                          +
                                                                                                                                                          1621  std::string("The transform vector from -transform_model_fun- ") +
                                                                                                                                                          +
                                                                                                                                                          1622  std::string(" does not match the size of ") +
                                                                                                                                                          +
                                                                                                                                                          1623  std::string("-transform_model_term_names-.")
                                                                                                                                                          +
                                                                                                                                                          1624  );
                                                                                                                                                          +
                                                                                                                                                          1625 
                                                                                                                                                          +
                                                                                                                                                          1626  // Resizing stats_support if the transform stats do not match the
                                                                                                                                                          +
                                                                                                                                                          1627  // previous size
                                                                                                                                                          +
                                                                                                                                                          1628  if ((nsupport == 0u) && (i == 0u) && (res.size() != k))
                                                                                                                                                          +
                                                                                                                                                          1629  stats_support.resize(
                                                                                                                                                          +
                                                                                                                                                          1630  (res.size() + 1) * (
                                                                                                                                                          +
                                                                                                                                                          1631  stats_support_sizes_acc.back() +
                                                                                                                                                          +
                                                                                                                                                          1632  stats_support_sizes.back()
                                                                                                                                                          +
                                                                                                                                                          1633  )
                                                                                                                                                          +
                                                                                                                                                          1634  );
                                                                                                                                                          +
                                                                                                                                                          1635 
                                                                                                                                                          +
                                                                                                                                                          1636  // Weigth
                                                                                                                                                          +
                                                                                                                                                          1637  stats_support[
                                                                                                                                                          +
                                                                                                                                                          1638  stats_support_sizes_acc[nsupport] * (res.size() + 1u) +
                                                                                                                                                          +
                                                                                                                                                          1639  (res.size() + 1u) * i
                                                                                                                                                          +
                                                                                                                                                          1640  ] = stats_support_old[
                                                                                                                                                          +
                                                                                                                                                          1641  stats_support_sizes_acc[nsupport] * (k + 1u) +
                                                                                                                                                          +
                                                                                                                                                          1642  i * (k + 1u)
                                                                                                                                                          +
                                                                                                                                                          1643  ];
                                                                                                                                                          +
                                                                                                                                                          1644 
                                                                                                                                                          +
                                                                                                                                                          1645  // Copying the rest of the elements
                                                                                                                                                          +
                                                                                                                                                          1646  for (size_t j = 0u; j < res.size(); ++j)
                                                                                                                                                          +
                                                                                                                                                          1647  stats_support[
                                                                                                                                                          +
                                                                                                                                                          1648  stats_support_sizes_acc[nsupport] * (res.size() + 1u) +
                                                                                                                                                          +
                                                                                                                                                          1649  (res.size() + 1u) * i + j + 1u
                                                                                                                                                          +
                                                                                                                                                          1650  ] = res[j];
                                                                                                                                                          +
                                                                                                                                                          1651 
                                                                                                                                                          +
                                                                                                                                                          1652  }
                                                                                                                                                          +
                                                                                                                                                          1653 
                                                                                                                                                          +
                                                                                                                                                          1654  }
                                                                                                                                                          +
                                                                                                                                                          1655 
                                                                                                                                                          +
                                                                                                                                                          1656  // Applying over the target statistics
                                                                                                                                                          +
                                                                                                                                                          1657  for (auto & s : stats_target)
                                                                                                                                                          +
                                                                                                                                                          1658  s = transform_model_fun(&s[0u], k);
                                                                                                                                                          +
                                                                                                                                                          1659 
                                                                                                                                                          +
                                                                                                                                                          1660  // Checking if there is support included
                                                                                                                                                          +
                                                                                                                                                          1661  if (with_pset)
                                                                                                                                                          +
                                                                                                                                                          1662  {
                                                                                                                                                          +
                                                                                                                                                          1663 
                                                                                                                                                          +
                                                                                                                                                          1664  // Applying it to the support
                                                                                                                                                          +
                                                                                                                                                          1665  for (auto s = 0u; s < pset_arrays.size(); ++s)
                                                                                                                                                          +
                                                                                                                                                          1666  {
                                                                                                                                                          +
                                                                                                                                                          1667  std::vector< double > new_stats;
                                                                                                                                                          +
                                                                                                                                                          1668 
                                                                                                                                                          +
                                                                                                                                                          1669  for (auto a = 0u; a < pset_arrays[s].size(); ++a)
                                                                                                                                                          +
                                                                                                                                                          1670  {
                                                                                                                                                          +
                                                                                                                                                          1671  // Computing the transformed version of the data
                                                                                                                                                          +
                                                                                                                                                          1672  auto tmpstats = transform_model_fun(
                                                                                                                                                          +
                                                                                                                                                          1673  &pset_stats[s][a * k], k
                                                                                                                                                          +
                                                                                                                                                          1674  );
                                                                                                                                                          +
                                                                                                                                                          1675 
                                                                                                                                                          +
                                                                                                                                                          1676  // Storing the new values
                                                                                                                                                          +
                                                                                                                                                          1677  for (auto p = 0u; p < k; ++p)
                                                                                                                                                          +
                                                                                                                                                          1678  new_stats.push_back(tmpstats[p]);
                                                                                                                                                          +
                                                                                                                                                          1679  }
                                                                                                                                                          +
                                                                                                                                                          1680 
                                                                                                                                                          +
                                                                                                                                                          1681  // Updating the dataset
                                                                                                                                                          +
                                                                                                                                                          1682  std::swap(pset_stats[s], new_stats);
                                                                                                                                                          +
                                                                                                                                                          1683 
                                                                                                                                                          +
                                                                                                                                                          1684  }
                                                                                                                                                          +
                                                                                                                                                          1685 
                                                                                                                                                          +
                                                                                                                                                          1686  }
                                                                                                                                                          +
                                                                                                                                                          1687 
                                                                                                                                                          +
                                                                                                                                                          1688  // And, resizing the last set of parameters
                                                                                                                                                          +
                                                                                                                                                          1689  for (auto & p : params_last)
                                                                                                                                                          +
                                                                                                                                                          1690  p.resize(transform_model_term_names.size());
                                                                                                                                                          +
                                                                                                                                                          1691 
                                                                                                                                                          +
                                                                                                                                                          1692  return;
                                                                                                                                                          +
                                                                                                                                                          1693 
                                                                                                                                                          +
                                                                                                                                                          1694 }
                                                                                                                                                          +
                                                                                                                                                          1695 
                                                                                                                                                          +
                                                                                                                                                          1696 #undef MODEL_TEMPLATE
                                                                                                                                                          +
                                                                                                                                                          1697 #undef MODEL_TEMPLATE_ARGS
                                                                                                                                                          +
                                                                                                                                                          1698 #undef MODEL_TYPE
                                                                                                                                                          +
                                                                                                                                                          1699 
                                                                                                                                                          +
                                                                                                                                                          1700 #endif
                                                                                                                                                          printf_barry
                                                                                                                                                          #define printf_barry
                                                                                                                                                          Definition: barry-configuration.hpp:51
                                                                                                                                                          BARRY_SAFE_EXP
                                                                                                                                                          #define BARRY_SAFE_EXP
                                                                                                                                                          Definition: barry-configuration.hpp:33
                                                                                                                                                          BARRY_NCORES_ARG
                                                                                                                                                          #define BARRY_NCORES_ARG(default)
                                                                                                                                                          Definition: barry-macros.hpp:15
                                                                                                                                                          Counter
                                                                                                                                                          A counter function based on change statistics.
                                                                                                                                                          Definition: counters-bones.hpp:35
                                                                                                                                                          Counters
                                                                                                                                                          Vector of counters.
                                                                                                                                                          Definition: counters-bones.hpp:108
                                                                                                                                                          Model
                                                                                                                                                          General framework for discrete exponential models. This class allows generating discrete exponential ...
                                                                                                                                                          Definition: model-bones.hpp:34
                                                                                                                                                          -
                                                                                                                                                          Model::size_unique
                                                                                                                                                          size_t size_unique() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1084
                                                                                                                                                          -
                                                                                                                                                          Model::transform_model_term_names
                                                                                                                                                          std::vector< std::string > transform_model_term_names
                                                                                                                                                          Definition: model-bones.hpp:125
                                                                                                                                                          -
                                                                                                                                                          Model::get_rengine
                                                                                                                                                          const std::mt19937 * get_rengine() const
                                                                                                                                                          Definition: model-meat.hpp:1432
                                                                                                                                                          -
                                                                                                                                                          Model::rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * rules_dyn
                                                                                                                                                          Definition: model-bones.hpp:93
                                                                                                                                                          -
                                                                                                                                                          Model::rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * rules
                                                                                                                                                          Definition: model-bones.hpp:92
                                                                                                                                                          -
                                                                                                                                                          Model::counter_fun
                                                                                                                                                          StatsCounter< Array_Type, Data_Counter_Type > counter_fun
                                                                                                                                                          Definition: model-bones.hpp:95
                                                                                                                                                          -
                                                                                                                                                          Model::size
                                                                                                                                                          size_t size() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1076
                                                                                                                                                          -
                                                                                                                                                          Model::add_counter
                                                                                                                                                          void add_counter(Counter< Array_Type, Data_Counter_Type > &counter)
                                                                                                                                                          Definition: model-meat.hpp:352
                                                                                                                                                          -
                                                                                                                                                          Model::get_counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                                                                                          Definition: model-meat.hpp:1437
                                                                                                                                                          -
                                                                                                                                                          Model::stats_target
                                                                                                                                                          std::vector< std::vector< double > > stats_target
                                                                                                                                                          Target statistics of the model.
                                                                                                                                                          Definition: model-bones.hpp:64
                                                                                                                                                          -
                                                                                                                                                          Model::get_pset_probs
                                                                                                                                                          std::vector< std::vector< double > > * get_pset_probs()
                                                                                                                                                          Definition: model-meat.hpp:1491
                                                                                                                                                          -
                                                                                                                                                          Model::sample
                                                                                                                                                          Array_Type sample(const Array_Type &Array_, const std::vector< double > &params={})
                                                                                                                                                          Definition: model-meat.hpp:1230
                                                                                                                                                          +
                                                                                                                                                          Model::size_unique
                                                                                                                                                          size_t size_unique() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1143
                                                                                                                                                          +
                                                                                                                                                          Model::transform_model_term_names
                                                                                                                                                          std::vector< std::string > transform_model_term_names
                                                                                                                                                          Definition: model-bones.hpp:127
                                                                                                                                                          +
                                                                                                                                                          Model::get_rengine
                                                                                                                                                          const std::mt19937 * get_rengine() const
                                                                                                                                                          Definition: model-meat.hpp:1518
                                                                                                                                                          +
                                                                                                                                                          Model::rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * rules_dyn
                                                                                                                                                          Definition: model-bones.hpp:95
                                                                                                                                                          +
                                                                                                                                                          Model::rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * rules
                                                                                                                                                          Definition: model-bones.hpp:94
                                                                                                                                                          +
                                                                                                                                                          Model::counter_fun
                                                                                                                                                          StatsCounter< Array_Type, Data_Counter_Type > counter_fun
                                                                                                                                                          Definition: model-bones.hpp:97
                                                                                                                                                          +
                                                                                                                                                          Model::size
                                                                                                                                                          size_t size() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1135
                                                                                                                                                          +
                                                                                                                                                          Model::add_counter
                                                                                                                                                          void add_counter(Counter< Array_Type, Data_Counter_Type > &counter)
                                                                                                                                                          Definition: model-meat.hpp:363
                                                                                                                                                          +
                                                                                                                                                          Model::get_counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                                                                                          Definition: model-meat.hpp:1523
                                                                                                                                                          +
                                                                                                                                                          Model::stats_target
                                                                                                                                                          std::vector< std::vector< double > > stats_target
                                                                                                                                                          Target statistics of the model.
                                                                                                                                                          Definition: model-bones.hpp:66
                                                                                                                                                          +
                                                                                                                                                          Model::get_pset_probs
                                                                                                                                                          std::vector< std::vector< double > > * get_pset_probs()
                                                                                                                                                          Definition: model-meat.hpp:1577
                                                                                                                                                          +
                                                                                                                                                          Model::sample
                                                                                                                                                          Array_Type sample(const Array_Type &Array_, const std::vector< double > &params={})
                                                                                                                                                          Definition: model-meat.hpp:1290
                                                                                                                                                          Model::update_normalizing_constants
                                                                                                                                                          void update_normalizing_constants(const std::vector< double > &params,)
                                                                                                                                                          Computes the normalizing constant for a given set of parameters.
                                                                                                                                                          Definition: model-meat.hpp:134
                                                                                                                                                          -
                                                                                                                                                          Model::get_stats_support
                                                                                                                                                          std::vector< std::vector< double > > * get_stats_support()
                                                                                                                                                          Definition: model-meat.hpp:1465
                                                                                                                                                          -
                                                                                                                                                          Model::add_rule_dyn
                                                                                                                                                          void add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > &rule)
                                                                                                                                                          Definition: model-meat.hpp:435
                                                                                                                                                          -
                                                                                                                                                          Model::stats_support
                                                                                                                                                          std::vector< std::vector< double > > stats_support
                                                                                                                                                          Sufficient statistics of the model (support)
                                                                                                                                                          Definition: model-bones.hpp:62
                                                                                                                                                          -
                                                                                                                                                          Model::store_psets
                                                                                                                                                          void store_psets() noexcept
                                                                                                                                                          Definition: model-meat.hpp:337
                                                                                                                                                          -
                                                                                                                                                          Model::conditional_prob
                                                                                                                                                          double conditional_prob(const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)
                                                                                                                                                          Conditional probability ("Gibbs sampler")
                                                                                                                                                          Definition: model-meat.hpp:1399
                                                                                                                                                          -
                                                                                                                                                          Model::get_pset_stats
                                                                                                                                                          std::vector< std::vector< double > > * get_pset_stats()
                                                                                                                                                          Statistics of the support(s)
                                                                                                                                                          Definition: model-meat.hpp:1485
                                                                                                                                                          -
                                                                                                                                                          Model::operator=
                                                                                                                                                          Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & operator=(const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
                                                                                                                                                          Definition: model-meat.hpp:287
                                                                                                                                                          -
                                                                                                                                                          Model::get_stats_target
                                                                                                                                                          std::vector< std::vector< double > > * get_stats_target()
                                                                                                                                                          Raw pointers to the support and target statistics.
                                                                                                                                                          Definition: model-meat.hpp:1458
                                                                                                                                                          -
                                                                                                                                                          Model::get_pset_arrays
                                                                                                                                                          std::vector< std::vector< Array_Type > > * get_pset_arrays()
                                                                                                                                                          Definition: model-meat.hpp:1479
                                                                                                                                                          -
                                                                                                                                                          Model::get_support_fun
                                                                                                                                                          Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > * get_support_fun()
                                                                                                                                                          Definition: model-meat.hpp:1453
                                                                                                                                                          -
                                                                                                                                                          Model::gen_key
                                                                                                                                                          std::vector< double > gen_key(const Array_Type &Array_)
                                                                                                                                                          Definition: model-meat.hpp:345
                                                                                                                                                          -
                                                                                                                                                          Model::arrays2support
                                                                                                                                                          std::vector< size_t > arrays2support
                                                                                                                                                          Definition: model-bones.hpp:65
                                                                                                                                                          -
                                                                                                                                                          Model::add_array
                                                                                                                                                          size_t add_array(const Array_Type &Array_, bool force_new=false)
                                                                                                                                                          Adds an array to the support of not already included.
                                                                                                                                                          Definition: model-meat.hpp:476
                                                                                                                                                          -
                                                                                                                                                          Model::add_hasher
                                                                                                                                                          void add_hasher(Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)
                                                                                                                                                          Definition: model-meat.hpp:396
                                                                                                                                                          -
                                                                                                                                                          Model::colnames
                                                                                                                                                          std::vector< std::string > colnames() const
                                                                                                                                                          Definition: model-meat.hpp:1133
                                                                                                                                                          -
                                                                                                                                                          Model::likelihood
                                                                                                                                                          double likelihood(const std::vector< double > &params, const size_t &i, bool as_log=false, bool no_update_normconst=false)
                                                                                                                                                          Definition: model-meat.hpp:612
                                                                                                                                                          -
                                                                                                                                                          Model::set_rules
                                                                                                                                                          void set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)
                                                                                                                                                          Definition: model-meat.hpp:417
                                                                                                                                                          -
                                                                                                                                                          Model::pset_stats
                                                                                                                                                          std::vector< std::vector< double > > pset_stats
                                                                                                                                                          Statistics of the support(s)
                                                                                                                                                          Definition: model-bones.hpp:82
                                                                                                                                                          -
                                                                                                                                                          Model::nrules
                                                                                                                                                          size_t nrules() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1104
                                                                                                                                                          -
                                                                                                                                                          Model::stats_support_n_arrays
                                                                                                                                                          std::vector< size_t > stats_support_n_arrays
                                                                                                                                                          Number of arrays included per support.
                                                                                                                                                          Definition: model-bones.hpp:63
                                                                                                                                                          -
                                                                                                                                                          Model::print_stats
                                                                                                                                                          void print_stats(size_t i) const
                                                                                                                                                          Definition: model-meat.hpp:985
                                                                                                                                                          -
                                                                                                                                                          Model::nterms
                                                                                                                                                          size_t nterms() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1093
                                                                                                                                                          -
                                                                                                                                                          Model::likelihood_total
                                                                                                                                                          double likelihood_total(const std::vector< double > &params, bool as_log=false, BARRY_NCORES_ARG(=2), bool no_update_normconst=false)
                                                                                                                                                          Definition: model-meat.hpp:873
                                                                                                                                                          -
                                                                                                                                                          Model::get_rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                                                                                          Definition: model-meat.hpp:1442
                                                                                                                                                          -
                                                                                                                                                          Model::set_counters
                                                                                                                                                          void set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)
                                                                                                                                                          Definition: model-meat.hpp:378
                                                                                                                                                          -
                                                                                                                                                          Model::support_size
                                                                                                                                                          size_t support_size() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1120
                                                                                                                                                          -
                                                                                                                                                          Model::nrules_dyn
                                                                                                                                                          size_t nrules_dyn() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1112
                                                                                                                                                          -
                                                                                                                                                          Model::params_last
                                                                                                                                                          std::vector< std::vector< double > > params_last
                                                                                                                                                          Vector of the previously used parameters.
                                                                                                                                                          Definition: model-bones.hpp:99
                                                                                                                                                          -
                                                                                                                                                          Model::print
                                                                                                                                                          virtual void print() const
                                                                                                                                                          Prints information about the model.
                                                                                                                                                          Definition: model-meat.hpp:1015
                                                                                                                                                          -
                                                                                                                                                          Model::support_fun
                                                                                                                                                          Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > support_fun
                                                                                                                                                          Definition: model-bones.hpp:94
                                                                                                                                                          -
                                                                                                                                                          Model::set_rules_dyn
                                                                                                                                                          void set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
                                                                                                                                                          Definition: model-meat.hpp:459
                                                                                                                                                          -
                                                                                                                                                          Model::pset_arrays
                                                                                                                                                          std::vector< std::vector< Array_Type > > pset_arrays
                                                                                                                                                          Arrays of the support(s)
                                                                                                                                                          Definition: model-bones.hpp:81
                                                                                                                                                          -
                                                                                                                                                          Model::transform_model_fun
                                                                                                                                                          std::function< std::vector< double >double *, size_t k)> transform_model_fun
                                                                                                                                                          Transformation of the model.
                                                                                                                                                          Definition: model-bones.hpp:123
                                                                                                                                                          -
                                                                                                                                                          Model::get_arrays2support
                                                                                                                                                          std::vector< size_t > * get_arrays2support()
                                                                                                                                                          Definition: model-meat.hpp:1472
                                                                                                                                                          -
                                                                                                                                                          Model::keys2support
                                                                                                                                                          MapVec_type< double, size_t > keys2support
                                                                                                                                                          Map of types of arrays to support sets.
                                                                                                                                                          Definition: model-bones.hpp:72
                                                                                                                                                          -
                                                                                                                                                          Model::get_normalizing_constants
                                                                                                                                                          std::vector< double > & get_normalizing_constants()
                                                                                                                                                          Definition: model-meat.hpp:951
                                                                                                                                                          - -
                                                                                                                                                          Model::normalizing_constants
                                                                                                                                                          std::vector< double > normalizing_constants
                                                                                                                                                          Definition: model-bones.hpp:100
                                                                                                                                                          -
                                                                                                                                                          Model::first_calc_done
                                                                                                                                                          std::vector< bool > first_calc_done
                                                                                                                                                          Definition: model-bones.hpp:101
                                                                                                                                                          -
                                                                                                                                                          Model::set_transform_model
                                                                                                                                                          void set_transform_model(std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)
                                                                                                                                                          Set the transform_model_fun object.
                                                                                                                                                          Definition: model-meat.hpp:1497
                                                                                                                                                          -
                                                                                                                                                          Model::counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * counters
                                                                                                                                                          Definition: model-bones.hpp:91
                                                                                                                                                          -
                                                                                                                                                          Model::get_pset
                                                                                                                                                          const std::vector< Array_Type > * get_pset(const size_t &i)
                                                                                                                                                          Definition: model-meat.hpp:959
                                                                                                                                                          -
                                                                                                                                                          Model::add_rule
                                                                                                                                                          void add_rule(Rule< Array_Type, Data_Rule_Type > &rule)
                                                                                                                                                          Definition: model-meat.hpp:407
                                                                                                                                                          -
                                                                                                                                                          Model::get_rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                                                                                          Definition: model-meat.hpp:1447
                                                                                                                                                          +
                                                                                                                                                          Model::add_rule_dyn
                                                                                                                                                          void add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > &rule)
                                                                                                                                                          Definition: model-meat.hpp:446
                                                                                                                                                          +
                                                                                                                                                          Model::stats_support
                                                                                                                                                          std::vector< double > stats_support
                                                                                                                                                          Sufficient statistics of the model (support)
                                                                                                                                                          Definition: model-bones.hpp:62
                                                                                                                                                          +
                                                                                                                                                          Model::store_psets
                                                                                                                                                          void store_psets() noexcept
                                                                                                                                                          Definition: model-meat.hpp:350
                                                                                                                                                          +
                                                                                                                                                          Model::conditional_prob
                                                                                                                                                          double conditional_prob(const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)
                                                                                                                                                          Conditional probability ("Gibbs sampler")
                                                                                                                                                          Definition: model-meat.hpp:1485
                                                                                                                                                          +
                                                                                                                                                          Model::get_pset_stats
                                                                                                                                                          std::vector< std::vector< double > > * get_pset_stats()
                                                                                                                                                          Statistics of the support(s)
                                                                                                                                                          Definition: model-meat.hpp:1571
                                                                                                                                                          +
                                                                                                                                                          Model::operator=
                                                                                                                                                          Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & operator=(const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
                                                                                                                                                          Definition: model-meat.hpp:298
                                                                                                                                                          +
                                                                                                                                                          Model::get_stats_target
                                                                                                                                                          std::vector< std::vector< double > > * get_stats_target()
                                                                                                                                                          Raw pointers to the support and target statistics.
                                                                                                                                                          Definition: model-meat.hpp:1544
                                                                                                                                                          +
                                                                                                                                                          Model::get_pset_arrays
                                                                                                                                                          std::vector< std::vector< Array_Type > > * get_pset_arrays()
                                                                                                                                                          Definition: model-meat.hpp:1565
                                                                                                                                                          +
                                                                                                                                                          Model::get_support_fun
                                                                                                                                                          Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > * get_support_fun()
                                                                                                                                                          Definition: model-meat.hpp:1539
                                                                                                                                                          +
                                                                                                                                                          Model::gen_key
                                                                                                                                                          std::vector< double > gen_key(const Array_Type &Array_)
                                                                                                                                                          Definition: model-meat.hpp:356
                                                                                                                                                          +
                                                                                                                                                          Model::arrays2support
                                                                                                                                                          std::vector< size_t > arrays2support
                                                                                                                                                          Definition: model-bones.hpp:67
                                                                                                                                                          +
                                                                                                                                                          Model::add_array
                                                                                                                                                          size_t add_array(const Array_Type &Array_, bool force_new=false)
                                                                                                                                                          Adds an array to the support of not already included.
                                                                                                                                                          Definition: model-meat.hpp:488
                                                                                                                                                          +
                                                                                                                                                          Model::add_hasher
                                                                                                                                                          void add_hasher(Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)
                                                                                                                                                          Definition: model-meat.hpp:407
                                                                                                                                                          +
                                                                                                                                                          Model::colnames
                                                                                                                                                          std::vector< std::string > colnames() const
                                                                                                                                                          Definition: model-meat.hpp:1193
                                                                                                                                                          +
                                                                                                                                                          Model::likelihood
                                                                                                                                                          double likelihood(const std::vector< double > &params, const size_t &i, bool as_log=false, bool no_update_normconst=false)
                                                                                                                                                          Definition: model-meat.hpp:650
                                                                                                                                                          +
                                                                                                                                                          Model::stats_support_sizes_acc
                                                                                                                                                          std::vector< size_t > stats_support_sizes_acc
                                                                                                                                                          Accumulated number of vectors included in the support.
                                                                                                                                                          Definition: model-bones.hpp:64
                                                                                                                                                          +
                                                                                                                                                          Model::get_stats_support
                                                                                                                                                          std::vector< double > * get_stats_support()
                                                                                                                                                          Definition: model-meat.hpp:1551
                                                                                                                                                          +
                                                                                                                                                          Model::set_rules
                                                                                                                                                          void set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)
                                                                                                                                                          Definition: model-meat.hpp:428
                                                                                                                                                          +
                                                                                                                                                          Model::pset_stats
                                                                                                                                                          std::vector< std::vector< double > > pset_stats
                                                                                                                                                          Statistics of the support(s)
                                                                                                                                                          Definition: model-bones.hpp:84
                                                                                                                                                          +
                                                                                                                                                          Model::nrules
                                                                                                                                                          size_t nrules() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1163
                                                                                                                                                          +
                                                                                                                                                          Model::stats_support_n_arrays
                                                                                                                                                          std::vector< size_t > stats_support_n_arrays
                                                                                                                                                          Number of arrays included per support.
                                                                                                                                                          Definition: model-bones.hpp:65
                                                                                                                                                          +
                                                                                                                                                          Model::print_stats
                                                                                                                                                          void print_stats(size_t i) const
                                                                                                                                                          Definition: model-meat.hpp:1034
                                                                                                                                                          +
                                                                                                                                                          Model::nterms
                                                                                                                                                          size_t nterms() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1152
                                                                                                                                                          +
                                                                                                                                                          Model::likelihood_total
                                                                                                                                                          double likelihood_total(const std::vector< double > &params, bool as_log=false, BARRY_NCORES_ARG(=2), bool no_update_normconst=false)
                                                                                                                                                          Definition: model-meat.hpp:919
                                                                                                                                                          +
                                                                                                                                                          Model::get_rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                                                                                          Definition: model-meat.hpp:1528
                                                                                                                                                          +
                                                                                                                                                          Model::set_counters
                                                                                                                                                          void set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)
                                                                                                                                                          Definition: model-meat.hpp:389
                                                                                                                                                          +
                                                                                                                                                          Model::support_size
                                                                                                                                                          size_t support_size() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1179
                                                                                                                                                          +
                                                                                                                                                          Model::nrules_dyn
                                                                                                                                                          size_t nrules_dyn() const noexcept
                                                                                                                                                          Definition: model-meat.hpp:1171
                                                                                                                                                          +
                                                                                                                                                          Model::params_last
                                                                                                                                                          std::vector< std::vector< double > > params_last
                                                                                                                                                          Vector of the previously used parameters.
                                                                                                                                                          Definition: model-bones.hpp:101
                                                                                                                                                          +
                                                                                                                                                          Model::print
                                                                                                                                                          virtual void print() const
                                                                                                                                                          Prints information about the model.
                                                                                                                                                          Definition: model-meat.hpp:1074
                                                                                                                                                          +
                                                                                                                                                          Model::support_fun
                                                                                                                                                          Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > support_fun
                                                                                                                                                          Definition: model-bones.hpp:96
                                                                                                                                                          +
                                                                                                                                                          Model::set_rules_dyn
                                                                                                                                                          void set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
                                                                                                                                                          Definition: model-meat.hpp:470
                                                                                                                                                          +
                                                                                                                                                          Model::pset_arrays
                                                                                                                                                          std::vector< std::vector< Array_Type > > pset_arrays
                                                                                                                                                          Arrays of the support(s)
                                                                                                                                                          Definition: model-bones.hpp:83
                                                                                                                                                          +
                                                                                                                                                          Model::transform_model_fun
                                                                                                                                                          std::function< std::vector< double >double *, size_t k)> transform_model_fun
                                                                                                                                                          Transformation of the model.
                                                                                                                                                          Definition: model-bones.hpp:125
                                                                                                                                                          +
                                                                                                                                                          Model::get_arrays2support
                                                                                                                                                          std::vector< size_t > * get_arrays2support()
                                                                                                                                                          Definition: model-meat.hpp:1558
                                                                                                                                                          +
                                                                                                                                                          Model::keys2support
                                                                                                                                                          MapVec_type< double, size_t > keys2support
                                                                                                                                                          Map of types of arrays to support sets.
                                                                                                                                                          Definition: model-bones.hpp:74
                                                                                                                                                          +
                                                                                                                                                          Model::stats_support_sizes
                                                                                                                                                          std::vector< size_t > stats_support_sizes
                                                                                                                                                          Number of vectors included in the support.
                                                                                                                                                          Definition: model-bones.hpp:63
                                                                                                                                                          +
                                                                                                                                                          Model::get_normalizing_constants
                                                                                                                                                          std::vector< double > & get_normalizing_constants()
                                                                                                                                                          Definition: model-meat.hpp:1000
                                                                                                                                                          + +
                                                                                                                                                          Model::normalizing_constants
                                                                                                                                                          std::vector< double > normalizing_constants
                                                                                                                                                          Definition: model-bones.hpp:102
                                                                                                                                                          +
                                                                                                                                                          Model::first_calc_done
                                                                                                                                                          std::vector< bool > first_calc_done
                                                                                                                                                          Definition: model-bones.hpp:103
                                                                                                                                                          +
                                                                                                                                                          Model::set_transform_model
                                                                                                                                                          void set_transform_model(std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)
                                                                                                                                                          Set the transform_model_fun object.
                                                                                                                                                          Definition: model-meat.hpp:1583
                                                                                                                                                          +
                                                                                                                                                          Model::counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * counters
                                                                                                                                                          Definition: model-bones.hpp:93
                                                                                                                                                          +
                                                                                                                                                          Model::get_pset
                                                                                                                                                          const std::vector< Array_Type > * get_pset(const size_t &i)
                                                                                                                                                          Definition: model-meat.hpp:1008
                                                                                                                                                          +
                                                                                                                                                          Model::add_rule
                                                                                                                                                          void add_rule(Rule< Array_Type, Data_Rule_Type > &rule)
                                                                                                                                                          Definition: model-meat.hpp:418
                                                                                                                                                          +
                                                                                                                                                          Model::get_rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                                                                                          Definition: model-meat.hpp:1533
                                                                                                                                                          Rule
                                                                                                                                                          Rule for determining if a cell should be included in a sequence.
                                                                                                                                                          Definition: rules-bones.hpp:20
                                                                                                                                                          Rules
                                                                                                                                                          Vector of objects of class Rule.
                                                                                                                                                          Definition: rules-bones.hpp:71
                                                                                                                                                          StatsCounter
                                                                                                                                                          Count stats for a single Array.
                                                                                                                                                          Definition: statscounter-bones.hpp:14
                                                                                                                                                          @@ -1766,7 +1881,7 @@ diff --git a/modules.html b/modules.html index 8deab3cb4..fca62bce3 100644 --- a/modules.html +++ b/modules.html @@ -110,7 +110,7 @@ diff --git a/namespace_c_h_e_c_k.html b/namespace_c_h_e_c_k.html index a047a214a..d77a6812e 100644 --- a/namespace_c_h_e_c_k.html +++ b/namespace_c_h_e_c_k.html @@ -186,7 +186,7 @@

                                                                                                                                                          • CHECK
                                                                                                                                                            • -
                                                                                                                                                          • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                            • +
                                                                                                                                                          • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                          diff --git a/namespace_e_x_i_s_t_s.html b/namespace_e_x_i_s_t_s.html index 68e4949fb..692f4802d 100644 --- a/namespace_e_x_i_s_t_s.html +++ b/namespace_e_x_i_s_t_s.html @@ -240,7 +240,7 @@

                                                                                                                                                          • EXISTS
                                                                                                                                                            • -
                                                                                                                                                          • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                            • +
                                                                                                                                                          • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                          diff --git a/namespacebarry.html b/namespacebarry.html index cfb4c26ee..4312cc046 100644 --- a/namespacebarry.html +++ b/namespacebarry.html @@ -116,7 +116,7 @@ diff --git a/namespacebarry_1_1counters.html b/namespacebarry_1_1counters.html index 7606c6aed..b39f4c8c4 100644 --- a/namespacebarry_1_1counters.html +++ b/namespacebarry_1_1counters.html @@ -115,7 +115,7 @@ diff --git a/namespacebarry_1_1counters_1_1network.html b/namespacebarry_1_1counters_1_1network.html index 9720ddc21..9f0a5ba0d 100644 --- a/namespacebarry_1_1counters_1_1network.html +++ b/namespacebarry_1_1counters_1_1network.html @@ -102,7 +102,7 @@ diff --git a/namespacedefm.html b/namespacedefm.html index 22aebbb9e..0f497d3c6 100644 --- a/namespacedefm.html +++ b/namespacedefm.html @@ -102,7 +102,7 @@ diff --git a/namespacegeese.html b/namespacegeese.html index 9ee566e4c..9ee787a9f 100644 --- a/namespacegeese.html +++ b/namespacegeese.html @@ -102,7 +102,7 @@ diff --git a/namespacemembers.html b/namespacemembers.html index 142cf62b6..783de0eb5 100644 --- a/namespacemembers.html +++ b/namespacemembers.html @@ -124,7 +124,7 @@ diff --git a/namespacemembers_vars.html b/namespacemembers_vars.html index cd38ed30b..d51dc9e23 100644 --- a/namespacemembers_vars.html +++ b/namespacemembers_vars.html @@ -124,7 +124,7 @@ diff --git a/navtreedata.js b/navtreedata.js index 8665cc928..9a8084331 100644 --- a/navtreedata.js +++ b/navtreedata.js @@ -59,9 +59,9 @@ var NAVTREEINDEX = "annotated.html", "class_b_array_dense.html#abff8ef2f4bcd467ebbbb8ac3089fcd52", "class_freq_table.html#a7ed627807a61c484243636137609abcd", -"class_rules.html#ab23bf6958f7bf6a869ef51122d82a624", -"globals.html", -"group__rules-phylo.html#ga87c654a27ccf0b679f804cb05f63f7e5" +"class_rules.html#aa78e9abf82ed8a0e4320d570191c8968", +"geese_8hpp.html", 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['rules_1258',['rules',['../class_model.html#a164a37ad8e2016e84b1873e64ba923f0',1,'Model::rules()'],['../class_power_set.html#afa542ecc31858c8644d1e76078eb1713',1,'PowerSet::rules()']]], + ['rules_5fdeleted_1259',['rules_deleted',['../class_power_set.html#a08b6baf1e244e023d997ddaecbc2116f',1,'PowerSet']]], + ['rules_5fdyn_1260',['rules_dyn',['../class_model.html#a11d9090903bfe8b35db92fe2579c2de3',1,'Model']]] ]; diff --git a/statscounter-bones_8hpp.html b/statscounter-bones_8hpp.html index aa8b42333..274724e2e 100644 --- a/statscounter-bones_8hpp.html +++ b/statscounter-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/statscounter-bones_8hpp_source.html b/statscounter-bones_8hpp_source.html index 8ae7a4ee7..5d260f6fa 100644 --- a/statscounter-bones_8hpp_source.html +++ b/statscounter-bones_8hpp_source.html @@ -188,7 +188,7 @@ diff --git a/statscounter-meat_8hpp.html b/statscounter-meat_8hpp.html index 945db9540..82c7609d7 100644 --- a/statscounter-meat_8hpp.html +++ b/statscounter-meat_8hpp.html @@ -713,7 +713,7 @@

                                                                                                                                                          • include
                                                                                                                                                          • barry
                                                                                                                                                          • statscounter-meat.hpp
                                                                                                                                                            • -
                                                                                                                                                          • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                            • +
                                                                                                                                                          • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                          diff --git a/statscounter-meat_8hpp_source.html b/statscounter-meat_8hpp_source.html index 1bdb37828..afe5fbf52 100644 --- a/statscounter-meat_8hpp_source.html +++ b/statscounter-meat_8hpp_source.html @@ -384,7 +384,7 @@ diff --git a/structvec_hasher-members.html b/structvec_hasher-members.html index 9643989eb..695f4874a 100644 --- a/structvec_hasher-members.html +++ b/structvec_hasher-members.html @@ -105,7 +105,7 @@ diff --git a/structvec_hasher.html b/structvec_hasher.html index da9819343..13fbcdf47 100644 --- a/structvec_hasher.html +++ b/structvec_hasher.html @@ -153,7 +153,7 @@

                                                                                                                                                          • vecHasher
                                                                                                                                                            • -
                                                                                                                                                          • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                            • +
                                                                                                                                                          • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                          diff --git a/support-bones_8hpp.html b/support-bones_8hpp.html index 61db85ad2..2c8c914cb 100644 --- a/support-bones_8hpp.html +++ b/support-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/support-bones_8hpp_source.html b/support-bones_8hpp_source.html index e3d8bf6fc..5ef429375 100644 --- a/support-bones_8hpp_source.html +++ b/support-bones_8hpp_source.html @@ -152,9 +152,9 @@
                                                                                                                                                          74  size_t max_num_elements = BARRY_MAX_NUM_ELEMENTS;
                                                                                                                                                          75 
                                                                                                                                                          76  // Temp variables to reduce memory allocation
                                                                                                                                                          -
                                                                                                                                                          77  std::vector< double > current_stats;
                                                                                                                                                          -
                                                                                                                                                          78  std::vector< size_t > coordinates_free;
                                                                                                                                                          -
                                                                                                                                                          79  std::vector< size_t > coordinates_locked;
                                                                                                                                                          +
                                                                                                                                                          77  std::vector< double > current_stats;
                                                                                                                                                          +
                                                                                                                                                          78  std::vector< size_t > coordinates_free;
                                                                                                                                                          +
                                                                                                                                                          79  std::vector< size_t > coordinates_locked;
                                                                                                                                                          80  size_t coordiantes_n_free;
                                                                                                                                                          81  size_t coordiantes_n_locked;
                                                                                                                                                          82  std::vector< double > change_stats;
                                                                                                                                                          @@ -220,7 +220,7 @@
                                                                                                                                                          183  size_t max_num_elements_ = 0u
                                                                                                                                                          184  );
                                                                                                                                                          185 
                                                                                                                                                          -
                                                                                                                                                          186  std::vector< double > get_counts() const;
                                                                                                                                                          +
                                                                                                                                                          186  const std::vector< double > & get_counts() const;
                                                                                                                                                          187  std::vector< double > * get_current_stats();
                                                                                                                                                          188  void print() const;
                                                                                                                                                          189 
                                                                                                                                                          @@ -246,27 +246,27 @@
                                                                                                                                                          Support::calc
                                                                                                                                                          void calc(std::vector< Array_Type > *array_bank=nullptr, std::vector< double > *stats_bank=nullptr, size_t max_num_elements_=0u)
                                                                                                                                                          Computes the entire support.
                                                                                                                                                          Definition: support-meat.hpp:383
                                                                                                                                                          Support::current_stats
                                                                                                                                                          std::vector< double > current_stats
                                                                                                                                                          Definition: support-bones.hpp:77
                                                                                                                                                          Support::M
                                                                                                                                                          size_t M
                                                                                                                                                          Definition: support-bones.hpp:70
                                                                                                                                                          -
                                                                                                                                                          Support::get_rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                                                                                          Vector of static rules (cells to iterate).
                                                                                                                                                          Definition: support-meat.hpp:599
                                                                                                                                                          +
                                                                                                                                                          Support::get_rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                                                                                          Vector of static rules (cells to iterate).
                                                                                                                                                          Definition: support-meat.hpp:598
                                                                                                                                                          Support::Support
                                                                                                                                                          Support(const Array_Type &Array_)
                                                                                                                                                          Constructor passing a reference Array.
                                                                                                                                                          Definition: support-bones.hpp:89
                                                                                                                                                          -
                                                                                                                                                          Support::get_counts
                                                                                                                                                          std::vector< double > get_counts() const
                                                                                                                                                          Definition: support-meat.hpp:558
                                                                                                                                                          Support::Support
                                                                                                                                                          Support(size_t N_, size_t M_)
                                                                                                                                                          Constructor specifying the dimensions of the array (empty).
                                                                                                                                                          Definition: support-bones.hpp:98
                                                                                                                                                          Support::coordiantes_n_free
                                                                                                                                                          size_t coordiantes_n_free
                                                                                                                                                          Definition: support-bones.hpp:80
                                                                                                                                                          Support::coordiantes_n_locked
                                                                                                                                                          size_t coordiantes_n_locked
                                                                                                                                                          Definition: support-bones.hpp:81
                                                                                                                                                          Support::init_support
                                                                                                                                                          void init_support(std::vector< Array_Type > *array_bank=nullptr, std::vector< double > *stats_bank=nullptr)
                                                                                                                                                          Definition: support-meat.hpp:5
                                                                                                                                                          -
                                                                                                                                                          Support::get_rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                                                                                          Vector of dynamic rules (to include/exclude a realizaton).
                                                                                                                                                          Definition: support-meat.hpp:604
                                                                                                                                                          +
                                                                                                                                                          Support::get_rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                                                                                          Vector of dynamic rules (to include/exclude a realizaton).
                                                                                                                                                          Definition: support-meat.hpp:603
                                                                                                                                                          Support::n_counters
                                                                                                                                                          size_t n_counters
                                                                                                                                                          Definition: support-bones.hpp:85
                                                                                                                                                          Support::coordinates_free
                                                                                                                                                          std::vector< size_t > coordinates_free
                                                                                                                                                          Definition: support-bones.hpp:78
                                                                                                                                                          Support::add_rule
                                                                                                                                                          void add_rule(Rule< Array_Type, Data_Rule_Type > *f_)
                                                                                                                                                          Definition: support-meat.hpp:444
                                                                                                                                                          -
                                                                                                                                                          Support::print
                                                                                                                                                          void print() const
                                                                                                                                                          Definition: support-meat.hpp:577
                                                                                                                                                          +
                                                                                                                                                          Support::print
                                                                                                                                                          void print() const
                                                                                                                                                          Definition: support-meat.hpp:576
                                                                                                                                                          Support::hashes_initialized
                                                                                                                                                          std::vector< bool > hashes_initialized
                                                                                                                                                          Definition: support-bones.hpp:84
                                                                                                                                                          Support::add_rule_dyn
                                                                                                                                                          void add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > *f_)
                                                                                                                                                          Definition: support-meat.hpp:479
                                                                                                                                                          Support::change_stats
                                                                                                                                                          std::vector< double > change_stats
                                                                                                                                                          Definition: support-bones.hpp:82
                                                                                                                                                          Support::delete_counters
                                                                                                                                                          bool delete_counters
                                                                                                                                                          Definition: support-bones.hpp:71
                                                                                                                                                          Support::set_rules_dyn
                                                                                                                                                          void set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
                                                                                                                                                          Definition: support-meat.hpp:499
                                                                                                                                                          -
                                                                                                                                                          Support::get_counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                                                                                          Vector of couter functions.
                                                                                                                                                          Definition: support-meat.hpp:594
                                                                                                                                                          +
                                                                                                                                                          Support::get_counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                                                                                          Vector of couter functions.
                                                                                                                                                          Definition: support-meat.hpp:593
                                                                                                                                                          Support::N
                                                                                                                                                          size_t N
                                                                                                                                                          Definition: support-bones.hpp:70
                                                                                                                                                          +
                                                                                                                                                          Support::get_counts
                                                                                                                                                          const std::vector< double > & get_counts() const
                                                                                                                                                          Definition: support-meat.hpp:557
                                                                                                                                                          Support::add_counter
                                                                                                                                                          void add_counter(Counter< Array_Type, Data_Counter_Type > f_)
                                                                                                                                                          Definition: support-meat.hpp:417
                                                                                                                                                          -
                                                                                                                                                          Support::get_data
                                                                                                                                                          const FreqTable< double > & get_data() const
                                                                                                                                                          Definition: support-meat.hpp:589
                                                                                                                                                          +
                                                                                                                                                          Support::get_data
                                                                                                                                                          const FreqTable< double > & get_data() const
                                                                                                                                                          Definition: support-meat.hpp:588
                                                                                                                                                          Support::reset_array
                                                                                                                                                          void reset_array()
                                                                                                                                                          Definition: support-meat.hpp:111
                                                                                                                                                          Support::coordinates_locked
                                                                                                                                                          std::vector< size_t > coordinates_locked
                                                                                                                                                          Definition: support-bones.hpp:79
                                                                                                                                                          @@ -276,7 +276,7 @@
                                                                                                                                                          Support::hashes
                                                                                                                                                          std::vector< size_t > hashes
                                                                                                                                                          Definition: support-bones.hpp:83
                                                                                                                                                          Support::set_rules
                                                                                                                                                          void set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)
                                                                                                                                                          Definition: support-meat.hpp:464
                                                                                                                                                          Support::set_counters
                                                                                                                                                          void set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)
                                                                                                                                                          Definition: support-meat.hpp:427
                                                                                                                                                          -
                                                                                                                                                          Support::get_current_stats
                                                                                                                                                          std::vector< double > * get_current_stats()
                                                                                                                                                          List current statistics.
                                                                                                                                                          Definition: support-meat.hpp:572
                                                                                                                                                          +
                                                                                                                                                          Support::get_current_stats
                                                                                                                                                          std::vector< double > * get_current_stats()
                                                                                                                                                          List current statistics.
                                                                                                                                                          Definition: support-meat.hpp:571
                                                                                                                                                          j
                                                                                                                                                          size_t size_t j
                                                                                                                                                          Definition: counters-meat.hpp:84
                                                                                                                                                          i
                                                                                                                                                          size_t i
                                                                                                                                                          Definition: counters-meat.hpp:83
                                                                                                                                                          counters_
                                                                                                                                                          Data_Type * counters_
                                                                                                                                                          Definition: statscounter-meat.hpp:54
                                                                                                                                                          @@ -289,7 +289,7 @@ diff --git a/support-meat_8hpp.html b/support-meat_8hpp.html index a2ce5d637..24ed2e75d 100644 --- a/support-meat_8hpp.html +++ b/support-meat_8hpp.html @@ -138,7 +138,7 @@

                                                                                                                                                          • include
                                                                                                                                                          • barry
                                                                                                                                                          • support-meat.hpp
                                                                                                                                                            • -
                                                                                                                                                          • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                            • +
                                                                                                                                                          • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                          diff --git a/support-meat_8hpp_source.html b/support-meat_8hpp_source.html index e7b87420d..da61d5c54 100644 --- a/support-meat_8hpp_source.html +++ b/support-meat_8hpp_source.html @@ -281,7 +281,7 @@
                                                                                                                                                          183  change_stats_different++;
                                                                                                                                                          184  current_stats[n] += tmp_chng;
                                                                                                                                                          185  change_stats[pos * n_counters + n] = tmp_chng;
                                                                                                                                                          -
                                                                                                                                                          186 
                                                                                                                                                          +
                                                                                                                                                          186 
                                                                                                                                                          187  }
                                                                                                                                                          188 
                                                                                                                                                          189  }
                                                                                                                                                          @@ -649,60 +649,59 @@
                                                                                                                                                          552 
                                                                                                                                                          553 // }
                                                                                                                                                          554 
                                                                                                                                                          -
                                                                                                                                                          556 
                                                                                                                                                          -
                                                                                                                                                          557 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          558 inline std::vector< double > Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_counts() const {
                                                                                                                                                          -
                                                                                                                                                          559 
                                                                                                                                                          -
                                                                                                                                                          560  return data.get_data();
                                                                                                                                                          -
                                                                                                                                                          561 
                                                                                                                                                          -
                                                                                                                                                          562 }
                                                                                                                                                          -
                                                                                                                                                          563 
                                                                                                                                                          -
                                                                                                                                                          564 // template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          565 // inline const MapVec_type<> * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_counts_ptr() const {
                                                                                                                                                          -
                                                                                                                                                          566 
                                                                                                                                                          -
                                                                                                                                                          567 // return data.get_data_ptr();
                                                                                                                                                          -
                                                                                                                                                          568 
                                                                                                                                                          -
                                                                                                                                                          569 // }
                                                                                                                                                          -
                                                                                                                                                          570 
                                                                                                                                                          -
                                                                                                                                                          571 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          572 inline std::vector< double > * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_current_stats() {
                                                                                                                                                          -
                                                                                                                                                          573  return &this->current_stats;
                                                                                                                                                          -
                                                                                                                                                          574 }
                                                                                                                                                          -
                                                                                                                                                          575 
                                                                                                                                                          -
                                                                                                                                                          576 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          577 inline void Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::print() const {
                                                                                                                                                          -
                                                                                                                                                          578 
                                                                                                                                                          -
                                                                                                                                                          579  // Starting from the name of the stats
                                                                                                                                                          -
                                                                                                                                                          580  printf_barry("Position of variables:\n");
                                                                                                                                                          -
                                                                                                                                                          581  for (size_t i = 0u; i < n_counters; ++i) {
                                                                                                                                                          -
                                                                                                                                                          582  printf_barry("[% 2li] %s\n", i, counters->operator[](i).name.c_str());
                                                                                                                                                          -
                                                                                                                                                          583  }
                                                                                                                                                          -
                                                                                                                                                          584 
                                                                                                                                                          -
                                                                                                                                                          585  data.print();
                                                                                                                                                          -
                                                                                                                                                          586 }
                                                                                                                                                          -
                                                                                                                                                          587 
                                                                                                                                                          -
                                                                                                                                                          588 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          589 inline const FreqTable<double> & Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_data() const {
                                                                                                                                                          -
                                                                                                                                                          590  return this->data;
                                                                                                                                                          -
                                                                                                                                                          591 }
                                                                                                                                                          -
                                                                                                                                                          592 
                                                                                                                                                          -
                                                                                                                                                          593 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          594 inline Counters<Array_Type,Data_Counter_Type> * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_counters() {
                                                                                                                                                          -
                                                                                                                                                          595  return this->counters;
                                                                                                                                                          -
                                                                                                                                                          596 }
                                                                                                                                                          -
                                                                                                                                                          597 
                                                                                                                                                          -
                                                                                                                                                          598 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          599 inline Rules<Array_Type,Data_Rule_Type> * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules() {
                                                                                                                                                          -
                                                                                                                                                          600  return this->rules;
                                                                                                                                                          -
                                                                                                                                                          601 }
                                                                                                                                                          -
                                                                                                                                                          602 
                                                                                                                                                          -
                                                                                                                                                          603 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          -
                                                                                                                                                          604 inline Rules<Array_Type,Data_Rule_Dyn_Type> * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules_dyn() {
                                                                                                                                                          -
                                                                                                                                                          605  return this->rules_dyn;
                                                                                                                                                          -
                                                                                                                                                          606 }
                                                                                                                                                          +
                                                                                                                                                          556 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          557 inline const std::vector< double > & Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_counts() const {
                                                                                                                                                          +
                                                                                                                                                          558 
                                                                                                                                                          +
                                                                                                                                                          559  return data.get_data();
                                                                                                                                                          +
                                                                                                                                                          560 
                                                                                                                                                          +
                                                                                                                                                          561 }
                                                                                                                                                          +
                                                                                                                                                          562 
                                                                                                                                                          +
                                                                                                                                                          563 // template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          564 // inline const MapVec_type<> * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_counts_ptr() const {
                                                                                                                                                          +
                                                                                                                                                          565 
                                                                                                                                                          +
                                                                                                                                                          566 // return data.get_data_ptr();
                                                                                                                                                          +
                                                                                                                                                          567 
                                                                                                                                                          +
                                                                                                                                                          568 // }
                                                                                                                                                          +
                                                                                                                                                          569 
                                                                                                                                                          +
                                                                                                                                                          570 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          571 inline std::vector< double > * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_current_stats() {
                                                                                                                                                          +
                                                                                                                                                          572  return &this->current_stats;
                                                                                                                                                          +
                                                                                                                                                          573 }
                                                                                                                                                          +
                                                                                                                                                          574 
                                                                                                                                                          +
                                                                                                                                                          575 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          576 inline void Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::print() const {
                                                                                                                                                          +
                                                                                                                                                          577 
                                                                                                                                                          +
                                                                                                                                                          578  // Starting from the name of the stats
                                                                                                                                                          +
                                                                                                                                                          579  printf_barry("Position of variables:\n");
                                                                                                                                                          +
                                                                                                                                                          580  for (size_t i = 0u; i < n_counters; ++i) {
                                                                                                                                                          +
                                                                                                                                                          581  printf_barry("[% 2li] %s\n", i, counters->operator[](i).name.c_str());
                                                                                                                                                          +
                                                                                                                                                          582  }
                                                                                                                                                          +
                                                                                                                                                          583 
                                                                                                                                                          +
                                                                                                                                                          584  data.print();
                                                                                                                                                          +
                                                                                                                                                          585 }
                                                                                                                                                          +
                                                                                                                                                          586 
                                                                                                                                                          +
                                                                                                                                                          587 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          588 inline const FreqTable<double> & Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_data() const {
                                                                                                                                                          +
                                                                                                                                                          589  return this->data;
                                                                                                                                                          +
                                                                                                                                                          590 }
                                                                                                                                                          +
                                                                                                                                                          591 
                                                                                                                                                          +
                                                                                                                                                          592 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          593 inline Counters<Array_Type,Data_Counter_Type> * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_counters() {
                                                                                                                                                          +
                                                                                                                                                          594  return this->counters;
                                                                                                                                                          +
                                                                                                                                                          595 }
                                                                                                                                                          +
                                                                                                                                                          596 
                                                                                                                                                          +
                                                                                                                                                          597 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          598 inline Rules<Array_Type,Data_Rule_Type> * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules() {
                                                                                                                                                          +
                                                                                                                                                          599  return this->rules;
                                                                                                                                                          +
                                                                                                                                                          600 }
                                                                                                                                                          +
                                                                                                                                                          601 
                                                                                                                                                          +
                                                                                                                                                          602 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                                                                                          +
                                                                                                                                                          603 inline Rules<Array_Type,Data_Rule_Dyn_Type> * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules_dyn() {
                                                                                                                                                          +
                                                                                                                                                          604  return this->rules_dyn;
                                                                                                                                                          +
                                                                                                                                                          605 }
                                                                                                                                                          +
                                                                                                                                                          606 
                                                                                                                                                          607 
                                                                                                                                                          -
                                                                                                                                                          608 
                                                                                                                                                          -
                                                                                                                                                          609 #endif
                                                                                                                                                          +
                                                                                                                                                          608 #endif
                                                                                                                                                          printf_barry
                                                                                                                                                          #define printf_barry
                                                                                                                                                          Definition: barry-configuration.hpp:51
                                                                                                                                                          BARRY_MAX_NUM_ELEMENTS
                                                                                                                                                          #define BARRY_MAX_NUM_ELEMENTS
                                                                                                                                                          Definition: barry-configuration.hpp:55
                                                                                                                                                          BARRY_CHECK_SUPPORT
                                                                                                                                                          #define BARRY_CHECK_SUPPORT(x, maxs)
                                                                                                                                                          Definition: barry-configuration.hpp:47
                                                                                                                                                          @@ -717,21 +716,21 @@
                                                                                                                                                          Support
                                                                                                                                                          Compute the support of sufficient statistics.
                                                                                                                                                          Definition: support-bones.hpp:42
                                                                                                                                                          Support::eval_rules_dyn
                                                                                                                                                          bool eval_rules_dyn(const std::vector< double > &counts, const size_t &i, const size_t &j)
                                                                                                                                                          Definition: support-meat.hpp:514
                                                                                                                                                          Support::calc
                                                                                                                                                          void calc(std::vector< Array_Type > *array_bank=nullptr, std::vector< double > *stats_bank=nullptr, size_t max_num_elements_=0u)
                                                                                                                                                          Computes the entire support.
                                                                                                                                                          Definition: support-meat.hpp:383
                                                                                                                                                          -
                                                                                                                                                          Support::get_rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                                                                                          Vector of static rules (cells to iterate).
                                                                                                                                                          Definition: support-meat.hpp:599
                                                                                                                                                          -
                                                                                                                                                          Support::get_counts
                                                                                                                                                          std::vector< double > get_counts() const
                                                                                                                                                          Definition: support-meat.hpp:558
                                                                                                                                                          +
                                                                                                                                                          Support::get_rules
                                                                                                                                                          Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                                                                                          Vector of static rules (cells to iterate).
                                                                                                                                                          Definition: support-meat.hpp:598
                                                                                                                                                          Support::init_support
                                                                                                                                                          void init_support(std::vector< Array_Type > *array_bank=nullptr, std::vector< double > *stats_bank=nullptr)
                                                                                                                                                          Definition: support-meat.hpp:5
                                                                                                                                                          -
                                                                                                                                                          Support::get_rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                                                                                          Vector of dynamic rules (to include/exclude a realizaton).
                                                                                                                                                          Definition: support-meat.hpp:604
                                                                                                                                                          +
                                                                                                                                                          Support::get_rules_dyn
                                                                                                                                                          Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                                                                                          Vector of dynamic rules (to include/exclude a realizaton).
                                                                                                                                                          Definition: support-meat.hpp:603
                                                                                                                                                          Support::add_rule
                                                                                                                                                          void add_rule(Rule< Array_Type, Data_Rule_Type > *f_)
                                                                                                                                                          Definition: support-meat.hpp:444
                                                                                                                                                          -
                                                                                                                                                          Support::print
                                                                                                                                                          void print() const
                                                                                                                                                          Definition: support-meat.hpp:577
                                                                                                                                                          +
                                                                                                                                                          Support::print
                                                                                                                                                          void print() const
                                                                                                                                                          Definition: support-meat.hpp:576
                                                                                                                                                          Support::add_rule_dyn
                                                                                                                                                          void add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > *f_)
                                                                                                                                                          Definition: support-meat.hpp:479
                                                                                                                                                          Support::set_rules_dyn
                                                                                                                                                          void set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
                                                                                                                                                          Definition: support-meat.hpp:499
                                                                                                                                                          -
                                                                                                                                                          Support::get_counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                                                                                          Vector of couter functions.
                                                                                                                                                          Definition: support-meat.hpp:594
                                                                                                                                                          +
                                                                                                                                                          Support::get_counters
                                                                                                                                                          Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                                                                                          Vector of couter functions.
                                                                                                                                                          Definition: support-meat.hpp:593
                                                                                                                                                          +
                                                                                                                                                          Support::get_counts
                                                                                                                                                          const std::vector< double > & get_counts() const
                                                                                                                                                          Definition: support-meat.hpp:557
                                                                                                                                                          Support::add_counter
                                                                                                                                                          void add_counter(Counter< Array_Type, Data_Counter_Type > f_)
                                                                                                                                                          Definition: support-meat.hpp:417
                                                                                                                                                          -
                                                                                                                                                          Support::get_data
                                                                                                                                                          const FreqTable< double > & get_data() const
                                                                                                                                                          Definition: support-meat.hpp:589
                                                                                                                                                          +
                                                                                                                                                          Support::get_data
                                                                                                                                                          const FreqTable< double > & get_data() const
                                                                                                                                                          Definition: support-meat.hpp:588
                                                                                                                                                          Support::reset_array
                                                                                                                                                          void reset_array()
                                                                                                                                                          Definition: support-meat.hpp:111
                                                                                                                                                          Support::set_rules
                                                                                                                                                          void set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)
                                                                                                                                                          Definition: support-meat.hpp:464
                                                                                                                                                          Support::set_counters
                                                                                                                                                          void set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)
                                                                                                                                                          Definition: support-meat.hpp:427
                                                                                                                                                          -
                                                                                                                                                          Support::get_current_stats
                                                                                                                                                          std::vector< double > * get_current_stats()
                                                                                                                                                          List current statistics.
                                                                                                                                                          Definition: support-meat.hpp:572
                                                                                                                                                          +
                                                                                                                                                          Support::get_current_stats
                                                                                                                                                          std::vector< double > * get_current_stats()
                                                                                                                                                          List current statistics.
                                                                                                                                                          Definition: support-meat.hpp:571
                                                                                                                                                          data
                                                                                                                                                          Data_Type &&counter_ data(std::move(counter_.data))
                                                                                                                                                          if
                                                                                                                                                          if(add_dims)
                                                                                                                                                          Definition: counters-meat.hpp:248
                                                                                                                                                          j
                                                                                                                                                          size_t size_t j
                                                                                                                                                          Definition: counters-meat.hpp:84
                                                                                                                                                          @@ -747,7 +746,7 @@ diff --git a/typedefs_8hpp.html b/typedefs_8hpp.html index 4b4623d52..8b6b50dbd 100644 --- a/typedefs_8hpp.html +++ b/typedefs_8hpp.html @@ -624,7 +624,7 @@

                                                                                                                                                          • include
                                                                                                                                                          • barry
                                                                                                                                                          • typedefs.hpp
                                                                                                                                                            • -
                                                                                                                                                          • Generated on Wed Oct 4 2023 04:34:15 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                            • +
                                                                                                                                                          • Generated on Wed Oct 4 2023 18:13:13 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                                                                                          diff --git a/typedefs_8hpp_source.html b/typedefs_8hpp_source.html index 5a2809fe0..ba9fde1e6 100644 --- a/typedefs_8hpp_source.html +++ b/typedefs_8hpp_source.html @@ -406,7 +406,7 @@