diff --git a/_r_e_a_d_m_e_8md.html b/_r_e_a_d_m_e_8md.html index 261c8bd19..50cea4e41 100644 --- a/_r_e_a_d_m_e_8md.html +++ b/_r_e_a_d_m_e_8md.html @@ -102,7 +102,7 @@ diff --git a/annotated.html b/annotated.html index bce8a14b2..c111ebe30 100644 --- a/annotated.html +++ b/annotated.html @@ -147,7 +147,7 @@ diff --git a/barray-bones_8hpp.html b/barray-bones_8hpp.html index c17ee7ee9..8e02a1cfa 100644 --- a/barray-bones_8hpp.html +++ b/barray-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/barray-bones_8hpp_source.html b/barray-bones_8hpp_source.html index e298328dd..a70c3f497 100644 --- a/barray-bones_8hpp_source.html +++ b/barray-bones_8hpp_source.html @@ -170,7 +170,7 @@
109  // since those are independent.
110  // BArray(BArray & A);
111 
-
119  void set_data(Data_Type * data_, bool delete_data_ = false);
+
119  void set_data(Data_Type * data_, bool delete_data_ = false);
120  Data_Type * D_ptr();
121  const Data_Type * D_ptr() const;
122  Data_Type & D();
@@ -179,18 +179,18 @@
126 
127  // Function to access the elements
128  // bool check_cell
-
129  void out_of_range(size_t i, size_t j) const;
-
130  Cell_Type get_cell(size_t i, size_t j, bool check_bounds = true) const;
-
131  std::vector< Cell_Type > get_col_vec(size_t i, bool check_bounds = true) const;
-
132  std::vector< Cell_Type > get_row_vec(size_t i, bool check_bounds = true) const;
-
133  void get_col_vec(std::vector< Cell_Type > * x, size_t i, bool check_bounds = true) const;
-
134  void get_row_vec(std::vector< Cell_Type > * x, size_t i, bool check_bounds = true) const;
-
135  const Row_type< Cell_Type > & row(size_t i, bool check_bounds = true) const;
-
136  const Col_type< Cell_Type > & col(size_t i, bool check_bounds = true) const;
+
129  void out_of_range(size_t i, size_t j) const;
+
130  Cell_Type get_cell(size_t i, size_t j, bool check_bounds = true) const;
+
131  std::vector< Cell_Type > get_col_vec(size_t i, bool check_bounds = true) const;
+
132  std::vector< Cell_Type > get_row_vec(size_t i, bool check_bounds = true) const;
+
133  void get_col_vec(std::vector< Cell_Type > * x, size_t i, bool check_bounds = true) const;
+
134  void get_row_vec(std::vector< Cell_Type > * x, size_t i, bool check_bounds = true) const;
+
135  const Row_type< Cell_Type > & row(size_t i, bool check_bounds = true) const;
+
136  const Col_type< Cell_Type > & col(size_t i, bool check_bounds = true) const;
137 
147  Entries<Cell_Type> get_entries() const;
148 
-
157  bool is_empty(size_t i, size_t j, bool check_bounds = true) const;
+
157  bool is_empty(size_t i, size_t j, bool check_bounds = true) const;
158  size_t nrow() const noexcept;
159  size_t ncol() const noexcept;
160  size_t nnozero() const noexcept;
@@ -198,14 +198,14 @@
163 
174  BArray<Cell_Type,Data_Type> & operator+=(const std::pair<size_t, size_t> & coords);
175  BArray<Cell_Type,Data_Type> & operator-=(const std::pair<size_t, size_t> & coords);
-
176  BArrayCell<Cell_Type,Data_Type> operator()(size_t i, size_t j, bool check_bounds = true);
-
177  const Cell_Type operator()(size_t i, size_t j, bool check_bounds = true) const;
+
176  BArrayCell<Cell_Type,Data_Type> operator()(size_t i, size_t j, bool check_bounds = true);
+
177  const Cell_Type operator()(size_t i, size_t j, bool check_bounds = true) const;
178 
-
179  void rm_cell(size_t i, size_t j, bool check_bounds = true, bool check_exists = true);
+
179  void rm_cell(size_t i, size_t j, bool check_bounds = true, bool check_exists = true);
180 
-
181  void insert_cell(size_t i, size_t j, const Cell< Cell_Type > & v, bool check_bounds, bool check_exists);
-
182  void insert_cell(size_t i, size_t j, Cell< Cell_Type > && v, bool check_bounds, bool check_exists);
-
183  void insert_cell(size_t i, size_t j, Cell_Type v, bool check_bounds, bool check_exists);
+
181  void insert_cell(size_t i, size_t j, const Cell< Cell_Type > & v, bool check_bounds, bool check_exists);
+
182  void insert_cell(size_t i, size_t j, Cell< Cell_Type > && v, bool check_bounds, bool check_exists);
+
183  void insert_cell(size_t i, size_t j, Cell_Type v, bool check_bounds, bool check_exists);
184 
185  void swap_cells(
186  size_t i0, size_t j0, size_t i1, size_t j1, bool check_bounds = true,
@@ -213,13 +213,13 @@
188  int * report = nullptr
189  );
190 
-
191  void toggle_cell(size_t i, size_t j, bool check_bounds = true, int check_exists = EXISTS::UKNOWN);
-
192  void toggle_lock(size_t i, size_t j, bool check_bounds = true);
+
191  void toggle_cell(size_t i, size_t j, bool check_bounds = true, int check_exists = EXISTS::UKNOWN);
+
192  void toggle_lock(size_t i, size_t j, bool check_bounds = true);
194 
197  void swap_rows(size_t i0, size_t i1, bool check_bounds = true);
198  void swap_cols(size_t j0, size_t j1, bool check_bounds = true);
199 
-
200  void zero_row(size_t i, bool check_bounds = true);
+
200  void zero_row(size_t i, bool check_bounds = true);
201  void zero_col(size_t j, bool check_bounds = true);
203 
204  void transpose();
@@ -312,10 +312,10 @@
Cell
Entries in BArray. For now, it only has two members:
Definition: cell-bones.hpp:10
Entries
A wrapper class to store source, target, val from a BArray object.
Definition: typedefs.hpp:78
data
Data_Type &&counter_ data(std::move(counter_.data))
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
-
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
+
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
CHECK
Integer constants used to specify which cell should be check.
Definition: typedefs.hpp:26
CHECK::BOTH
const int BOTH
Definition: typedefs.hpp:27
EXISTS
Integer constants used to specify which cell should be check to exist or not.
Definition: typedefs.hpp:37
@@ -328,7 +328,7 @@ diff --git a/barray-iterator_8hpp.html b/barray-iterator_8hpp.html index 88ad5284b..79cb99a4e 100644 --- a/barray-iterator_8hpp.html +++ b/barray-iterator_8hpp.html @@ -112,7 +112,7 @@ diff --git a/barray-iterator_8hpp_source.html b/barray-iterator_8hpp_source.html index be18645eb..7d2070870 100644 --- a/barray-iterator_8hpp_source.html +++ b/barray-iterator_8hpp_source.html @@ -115,9 +115,9 @@
17  ConstBArrayRowIter(const BArray<Cell_Type,Data_Type> * Array_) : Array(Array_) {
18 
19  // Finding the first entry of the iterator
-
20  for (size_t i = 0u; i < Array->nrow(); ++i)
-
21  if (A_ROW(i).size() != 0u) {
-
22  iter = A_ROW(i).begin();
+
20  for (size_t i = 0u; i < Array->nrow(); ++i)
+
21  if (A_ROW(i).size() != 0u) {
+
22  iter = A_ROW(i).begin();
23  break;
24  }
25 
@@ -140,8 +140,7 @@
ConstBArrayRowIter::iter
Row_type< Cell_Type >::const_iterator iter
Definition: barray-iterator.hpp:14
ConstBArrayRowIter::current_row
size_t current_row
Definition: barray-iterator.hpp:13
ConstBArrayRowIter::Array
const BArray< Cell_Type, Data_Type > * Array
Definition: barray-iterator.hpp:15
-
i
size_t i
Definition: counters-meat.hpp:83
-
size
return arrays2support size() - 1u
+
i
size_t i
Definition: counters-meat.hpp:83
Row_type
Map< size_t, Cell< Cell_Type > > Row_type
Definition: typedefs.hpp:67
@@ -149,7 +148,7 @@ diff --git a/barray-meat-operators_8hpp.html b/barray-meat-operators_8hpp.html index e731fc2c6..fe9d2369d 100644 --- a/barray-meat-operators_8hpp.html +++ b/barray-meat-operators_8hpp.html @@ -118,11 +118,11 @@   #define BARRAY_TEMPLATE_ARGS()   <typename Cell_Type, typename Data_Type>   -#define BARRAY_TEMPLATE(a, b)    template BARRAY_TEMPLATE_ARGS() inline a BARRAY_TYPE()::b +#define BARRAY_TEMPLATE(a, b)    template BARRAY_TEMPLATE_ARGS() inline a BARRAY_TYPE()::b   -#define ROW(a)   this->el_ij[a] +#define ROW(a)   this->el_ij[a]   -#define COL(a)   this->el_ji[a] +#define COL(a)   this->el_ji[a]   - + - + @@ -152,7 +152,7 @@ Variables - +

@@ -133,9 +133,9 @@

 
 BARRAY_TEMPLATE (BARRAY_TYPE()&, operator+=)(const BArray< Cell_Type
 
 for (size_t i=0u;i< nrow();++i) for(size_t j=0u
 for (size_t i=0u;i< nrow();++i) for(size_t j=0u
 
j< ncol();++j) this-> operator() (i, j)+
j< ncol();++j) this-> operator() (i, j)+
 
 BARRAY_TEMPLATE (BARRAY_TYPE()&, operator+=)(const Cell_Type &rhs)
 
Data_Type & rhs
 
return * this
return * this
 

Macro Definition Documentation

@@ -166,7 +166,7 @@

#define BARRAY_TEMPLATE (   - a, + a, @@ -177,7 +177,7 @@

BARRAY_TEMPLATE_ARGS() inline a BARRAY_TYPE()::b +     template BARRAY_TEMPLATE_ARGS() inline a BARRAY_TYPE()::b
@@ -234,8 +234,8 @@

#define COL (   - a) -    this->el_ji[a] + a) +    this->el_ji[a]

@@ -254,8 +254,8 @@

#define ROW (   - a) -    this->el_ij[a] + a) +    this->el_ij[a]

@@ -513,7 +513,7 @@

j< ncol(); ++j) this-> operator() ( - i  + i  , @@ -561,7 +561,7 @@

- +
return * thisreturn * this

@@ -576,7 +576,7 @@

  • include
  • barry
  • barray-meat-operators.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/barray-meat-operators_8hpp_source.html b/barray-meat-operators_8hpp_source.html index f35376044..45c1bfe4c 100644 --- a/barray-meat-operators_8hpp_source.html +++ b/barray-meat-operators_8hpp_source.html @@ -134,9 +134,9 @@
36  // Must be compatible
37  checkdim_(*this, rhs);
38 
-
39  for (size_t i = 0u; i < nrow(); ++i)
+
39  for (size_t i = 0u; i < nrow(); ++i)
40  for (size_t j = 0u; j < ncol(); ++j)
-
41  this->operator()(i, j) += rhs.get_cell(i, j);
+
41  this->operator()(i, j) += rhs.get_cell(i, j);
42 
43  return *this;
44 }
@@ -145,9 +145,9 @@
47  const Cell_Type& rhs
48 ) {
49 
-
50  for (size_t i = 0u; i < nrow(); ++i) {
+
50  for (size_t i = 0u; i < nrow(); ++i) {
51  for (size_t j = 0u; j < ncol(); ++j) {
-
52  this->operator()(i, j) += rhs;
+
52  this->operator()(i, j) += rhs;
53  }
54  }
55 
@@ -161,9 +161,9 @@
63  // Must be compatible
64  checkdim_(*this, rhs);
65 
-
66  for (size_t i = 0u; i < nrow(); ++i) {
+
66  for (size_t i = 0u; i < nrow(); ++i) {
67  for (size_t j = 0u; j < ncol(); ++j) {
-
68  this->operator()(i, j) -= rhs.get_cell(i, j);
+
68  this->operator()(i, j) -= rhs.get_cell(i, j);
69  }
70  }
71 
@@ -174,9 +174,9 @@
76  const Cell_Type& rhs
77 ) {
78 
-
79  for (size_t i = 0u; i < nrow(); ++i) {
+
79  for (size_t i = 0u; i < nrow(); ++i) {
80  for (size_t j = 0u; j < ncol(); ++j) {
-
81  this->operator()(i, j) -= rhs;
+
81  this->operator()(i, j) -= rhs;
82  }
83  }
84 
@@ -187,13 +187,13 @@
89  const Cell_Type& rhs
90 ) {
91 
-
92  for (size_t i = 0u; i < nrow(); ++i) {
+
92  for (size_t i = 0u; i < nrow(); ++i) {
93 
-
94  if (ROW(i).size() == 0u)
+
94  if (ROW(i).size() == 0u)
95  continue;
96 
-
97  for (auto col = ROW(i).begin(); col != ROW(i).end(); ++col) {
-
98  this->operator()(i, col->first) *= rhs;
+
97  for (auto col = ROW(i).begin(); col != ROW(i).end(); ++col) {
+
98  this->operator()(i, col->first) *= rhs;
99  }
100  }
101 
@@ -204,13 +204,13 @@
106  const Cell_Type& rhs
107 ) {
108 
-
109  for (size_t i = 0u; i < nrow(); ++i) {
+
109  for (size_t i = 0u; i < nrow(); ++i) {
110 
-
111  if (ROW(i).size() == 0u)
+
111  if (ROW(i).size() == 0u)
112  continue;
113 
-
114  for (auto col = ROW(i).begin(); col != ROW(i).end(); ++col) {
-
115  this->operator()(i, col->first) /= rhs;
+
114  for (auto col = ROW(i).begin(); col != ROW(i).end(); ++col) {
+
115  this->operator()(i, col->first) /= rhs;
116  }
117  }
118 
@@ -232,15 +232,15 @@
BARRAY_TYPE
#define BARRAY_TYPE()
Definition: barray-meat-operators.hpp:7
BARRAY_TEMPLATE
#define BARRAY_TEMPLATE(a, b)
Definition: barray-meat-operators.hpp:11
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
diff --git a/barray-meat_8hpp.html b/barray-meat_8hpp.html index 5e2eca983..8f0a12a23 100644 --- a/barray-meat_8hpp.html +++ b/barray-meat_8hpp.html @@ -112,9 +112,9 @@ - + - +

Macros

#define ROW(a)   this->el_ij[a]
#define ROW(a)   this->el_ij[a]
 
#define COL(a)   this->el_ji[a]
#define COL(a)   this->el_ji[a]
 

Macro Definition Documentation

@@ -128,8 +128,8 @@

#define COL (   - a) -    this->el_ji[a] + a) +    this->el_ji[a]
@@ -148,8 +148,8 @@

#define ROW (   - a) -    this->el_ij[a] + a) +    this->el_ij[a]

@@ -164,7 +164,7 @@

  • include
  • barry
  • barray-meat.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/barray-meat_8hpp_source.html b/barray-meat_8hpp_source.html index fc8901122..d065f0f7b 100644 --- a/barray-meat_8hpp_source.html +++ b/barray-meat_8hpp_source.html @@ -139,19 +139,19 @@
41 
42 
43  // Writing the data
-
44  for (size_t i = 0u; i < source.size(); ++i) {
+
44  for (size_t i = 0u; i < source.size(); ++i) {
45 
46  // Checking range
-
47  bool empty = this->is_empty(source[i], target[i], true);
+
47  bool empty = this->is_empty(source[i], target[i], true);
48  if (add && !empty) {
-
49  ROW(source[i])[target[i]].add(value[i]);
+
49  ROW(source[i])[target[i]].add(value[i]);
50  continue;
51  }
52 
53  if (!empty)
54  throw std::logic_error("The value already exists. Use 'add = true'.");
55 
-
56  this->insert_cell(source[i], target[i], value[i], false, false);
+
56  this->insert_cell(source[i], target[i], value[i], false, false);
57  }
58 
59  return;
@@ -183,35 +183,35 @@
85 
86 
87  // Writing the data
-
88  for (size_t i = 0u; i < source.size(); ++i) {
+
88  for (size_t i = 0u; i < source.size(); ++i) {
89 
90  // Checking range
-
91  if ((source[i] >= N_) || (target[i] >= M_))
+
91  if ((source[i] >= N_) || (target[i] >= M_))
92  throw std::range_error("Either source or target point to an element outside of the range by (N,M).");
93 
94  // Checking if it exists
-
95  auto search = ROW(source[i]).find(target[i]);
-
96  if (search != ROW(source[i]).end()) {
+
95  auto search = ROW(source[i]).find(target[i]);
+
96  if (search != ROW(source[i]).end()) {
97  if (!add)
98  throw std::logic_error("The value already exists. Use 'add = true'.");
99 
100  // Increasing the value (this will automatically update the
101  // other value)
-
102  ROW(source[i])[target[i]].add(value[i]);
+
102  ROW(source[i])[target[i]].add(value[i]);
103  continue;
104  }
105 
106  // Adding the value and creating a pointer to it
-
107  ROW(source[i]).emplace(
+
107  ROW(source[i]).emplace(
108  std::pair<size_t, Cell< Cell_Type> >(
-
109  target[i],
-
110  Cell< Cell_Type >(value[i], visited)
+
109  target[i],
+
110  Cell< Cell_Type >(value[i], visited)
111  )
112  );
113 
-
114  COL(target[i]).emplace(
-
115  source[i],
-
116  &ROW(source[i])[target[i]]
+
114  COL(target[i]).emplace(
+
115  source[i],
+
116  &ROW(source[i])[target[i]]
117  );
118 
119  NCells++;
@@ -237,11 +237,11 @@
139  std::copy(Array_.el_ji.begin(), Array_.el_ji.end(), std::back_inserter(el_ji));
140 
141  // Taking care of the pointers
-
142  for (size_t i = 0u; i < N; ++i)
+
142  for (size_t i = 0u; i < N; ++i)
143  {
144 
-
145  for (auto& r: row(i, false))
-
146  COL(r.first)[i] = &ROW(i)[r.first];
+
145  for (auto& r: row(i, false))
+
146  COL(r.first)[i] = &ROW(i)[r.first];
147 
148  }
149 
@@ -284,14 +284,14 @@
186  this->resize(Array_.N, Array_.M);
187 
188  // Entries
-
189  for (size_t i = 0u; i < N; ++i)
+
189  for (size_t i = 0u; i < N; ++i)
190  {
191 
192  if (Array_.nnozero() == nnozero())
193  break;
194 
-
195  for (auto& r : Array_.row(i, false))
-
196  this->insert_cell(i, r.first, r.second.value, false, false);
+
195  for (auto& r : Array_.row(i, false))
+
196  this->insert_cell(i, r.first, r.second.value, false, false);
197 
198  }
199 
@@ -333,13 +333,13 @@
235  this->resize(x.N, x.M);
236 
237  // Entries
-
238  for (size_t i = 0u; i < N; ++i) {
+
238  for (size_t i = 0u; i < N; ++i) {
239 
240  if (x.nnozero() == nnozero())
241  break;
242 
-
243  for (auto& r : x.row(i, false))
-
244  this->insert_cell(i, r.first, r.second.value, false, false);
+
243  for (auto& r : x.row(i, false))
+
244  this->insert_cell(i, r.first, r.second.value, false, false);
245 
246  }
247 
@@ -374,13 +374,13 @@
276  this->resize(x.N, x.M);
277 
278  // Entries
-
279  for (size_t i = 0u; i < N; ++i) {
+
279  for (size_t i = 0u; i < N; ++i) {
280 
281  if (x.nnozero() == nnozero())
282  break;
283 
-
284  for (auto& r : x.row(i, false))
-
285  this->insert_cell(i, r.first, r.second.value, false, false);
+
284  for (auto& r : x.row(i, false))
+
285  this->insert_cell(i, r.first, r.second.value, false, false);
286 
287  }
288 
@@ -439,13 +439,13 @@
341 }
342 
343 template<typename Cell_Type, typename Data_Type> inline void BArray<Cell_Type, Data_Type>:: set_data (
-
344  Data_Type * data_, bool delete_data_
+
344  Data_Type * data_, bool delete_data_
345 ) {
346 
347  if ((data != nullptr) && delete_data)
348  delete data;
349 
-
350  data = data_;
+
350  data = data_;
351  delete_data = delete_data_;
352 
353  return;
@@ -491,11 +491,11 @@
393 }
394 
395 template<typename Cell_Type, typename Data_Type> inline void BArray<Cell_Type, Data_Type>:: out_of_range (
-
396  size_t i,
+
396  size_t i,
397  size_t j
398 ) const {
399 
-
400  if (i >= N)
+
400  if (i >= N)
401  throw std::range_error("The row is out of range.");
402  else if (j >= M)
403  throw std::range_error("The column is out of range.");
@@ -504,21 +504,21 @@
406 }
407 
408 template<typename Cell_Type, typename Data_Type> inline Cell_Type BArray<Cell_Type, Data_Type>:: get_cell (
-
409  size_t i,
+
409  size_t i,
410  size_t j,
411  bool check_bounds
412 ) const {
413 
414  // Checking boundaries
415  if (check_bounds)
-
416  out_of_range(i,j);
+
416  out_of_range(i,j);
417 
-
418  if (ROW(i).size() == 0u)
+
418  if (ROW(i).size() == 0u)
419  return (Cell_Type) 0.0;
420 
421  // If it is not empty, then find and return
-
422  auto search = ROW(i).find(j);
-
423  if (search != ROW(i).end())
+
422  auto search = ROW(i).find(j);
+
423  if (search != ROW(i).end())
424  return search->second.value;
425 
426  // This is if it is empty
@@ -527,16 +527,16 @@
429 }
430 
431 template<typename Cell_Type, typename Data_Type> inline std::vector< Cell_Type > BArray<Cell_Type, Data_Type>:: get_row_vec (
-
432  size_t i,
+
432  size_t i,
433  bool check_bounds
434 ) const {
435 
436  // Checking boundaries
437  if (check_bounds)
-
438  out_of_range(i, 0u);
+
438  out_of_range(i, 0u);
439 
440  std::vector< Cell_Type > ans(ncol(), (Cell_Type) false);
-
441  for (const auto & iter : row(i, false))
+
441  for (const auto & iter : row(i, false))
442  ans[iter.first] = iter.second.value; //this->get_cell(i, iter->first, false);
443 
444 
@@ -545,30 +545,30 @@
447 
448 template<typename Cell_Type, typename Data_Type> inline void BArray<Cell_Type, Data_Type>:: get_row_vec (
449  std::vector< Cell_Type > * x,
-
450  size_t i,
+
450  size_t i,
451  bool check_bounds
452 ) const {
453 
454  // Checking boundaries
455  if (check_bounds)
-
456  out_of_range(i, 0u);
+
456  out_of_range(i, 0u);
457 
-
458  for (const auto & iter : row(i, false))
+
458  for (const auto & iter : row(i, false))
459  x->at(iter.first) = iter.second.value; // this->get_cell(i, iter->first, false);
460 
461 }
462 
463 template<typename Cell_Type, typename Data_Type> inline std::vector< Cell_Type > BArray<Cell_Type, Data_Type>:: get_col_vec (
-
464  size_t i,
+
464  size_t i,
465  bool check_bounds
466 ) const {
467 
468  // Checking boundaries
469  if (check_bounds)
-
470  out_of_range(0u, i);
+
470  out_of_range(0u, i);
471 
472  std::vector< Cell_Type > ans(nrow(), (Cell_Type) false);
-
473  for (const auto iter : col(i, false))
+
473  for (const auto iter : col(i, false))
474  ans[iter.first] = iter.second->value;//this->get_cell(iter->first, i, false);
475 
476  return ans;
@@ -577,40 +577,40 @@
479 
480 template<typename Cell_Type, typename Data_Type> inline void BArray<Cell_Type, Data_Type>:: get_col_vec (
481  std::vector<Cell_Type> * x,
-
482  size_t i,
+
482  size_t i,
483  bool check_bounds
484 ) const {
485 
486  // Checking boundaries
487  if (check_bounds)
-
488  out_of_range(0u, i);
+
488  out_of_range(0u, i);
489 
-
490  for (const auto & iter : col(i, false))
+
490  for (const auto & iter : col(i, false))
491  x->at(iter.first) = iter.second->value;//this->get_cell(iter->first, i, false);
492 
493 }
494 
495 template<typename Cell_Type, typename Data_Type> inline const Row_type< Cell_Type > & BArray<Cell_Type, Data_Type>:: row (
-
496  size_t i,
+
496  size_t i,
497  bool check_bounds
498 ) const {
499 
500  if (check_bounds)
-
501  out_of_range(i, 0u);
+
501  out_of_range(i, 0u);
502 
-
503  return this->el_ij[i];
+
503  return this->el_ij[i];
504 
505 }
506 
507 template<typename Cell_Type, typename Data_Type> inline const Col_type< Cell_Type > & BArray<Cell_Type, Data_Type>:: col (
-
508  size_t i,
+
508  size_t i,
509  bool check_bounds
510 ) const {
511 
512  if (check_bounds)
-
513  out_of_range(0u, i);
+
513  out_of_range(0u, i);
514 
-
515  return this->el_ji[i];
+
515  return this->el_ji[i];
516 
517 }
518 
@@ -618,13 +618,13 @@
520 
521  Entries<Cell_Type> res(NCells);
522 
-
523  for (size_t i = 0u; i < N; ++i) {
+
523  for (size_t i = 0u; i < N; ++i) {
524 
-
525  if (ROW(i).size() == 0u)
+
525  if (ROW(i).size() == 0u)
526  continue;
527 
-
528  for (auto col = ROW(i).begin(); col != ROW(i).end(); ++col) {
-
529  res.source.push_back(i),
+
528  for (auto col = ROW(i).begin(); col != ROW(i).end(); ++col) {
+
529  res.source.push_back(i),
530  res.target.push_back(col->first),
531  res.val.push_back(col->second.value);
532  }
@@ -634,20 +634,20 @@
536 }
537 
538 template<typename Cell_Type, typename Data_Type> inline bool BArray<Cell_Type, Data_Type>:: is_empty (
-
539  size_t i,
+
539  size_t i,
540  size_t j,
541  bool check_bounds
542 ) const {
543 
544  if (check_bounds)
-
545  out_of_range(i, j);
+
545  out_of_range(i, j);
546 
-
547  if (ROW(i).size() == 0u)
+
547  if (ROW(i).size() == 0u)
548  return true;
-
549  else if (COL(j).size() == 0u)
+
549  else if (COL(j).size() == 0u)
550  return true;
551 
-
552  if (ROW(i).find(j) == ROW(i).end())
+
552  if (ROW(i).find(j) == ROW(i).end())
553  return true;
554 
555  return false;
@@ -704,28 +704,28 @@
606 
607 template<typename Cell_Type, typename Data_Type>
608 inline BArrayCell<Cell_Type,Data_Type> BArray<Cell_Type, Data_Type>::operator()(
-
609  size_t i,
+
609  size_t i,
610  size_t j,
611  bool check_bounds
612 ) {
613 
-
614  return BArrayCell<Cell_Type,Data_Type>(this, i, j, check_bounds);
+
614  return BArrayCell<Cell_Type,Data_Type>(this, i, j, check_bounds);
615 
616 }
617 
618 template<typename Cell_Type, typename Data_Type>
619 inline const Cell_Type BArray<Cell_Type, Data_Type>::operator() (
-
620  size_t i,
+
620  size_t i,
621  size_t j,
622  bool check_bounds
623 ) const {
624 
-
625  return get_cell(i, j, check_bounds);
+
625  return get_cell(i, j, check_bounds);
626 
627 }
628 
629 template<typename Cell_Type, typename Data_Type> inline void BArray<Cell_Type, Data_Type>:: rm_cell (
-
630  size_t i,
+
630  size_t i,
631  size_t j,
632  bool check_bounds,
633  bool check_exists
@@ -733,25 +733,25 @@
635 
636  // Checking the boundaries
637  if (check_bounds)
-
638  out_of_range(i,j);
+
638  out_of_range(i,j);
639 
640  if (check_exists) {
641  // Nothing to do
-
642  if (ROW(i).size() == 0u)
+
642  if (ROW(i).size() == 0u)
643  return;
644 
645  // Checking the counter part
-
646  if (COL(j).size() == 0u)
+
646  if (COL(j).size() == 0u)
647  return;
648 
649  // Hard work, need to remove it from both, if it exist
-
650  if (ROW(i).find(j) == ROW(i).end())
+
650  if (ROW(i).find(j) == ROW(i).end())
651  return;
652  }
653 
654  // Remove the pointer first (so it wont point to empty)
-
655  COL(j).erase(i);
-
656  ROW(i).erase(j);
+
655  COL(j).erase(i);
+
656  ROW(i).erase(j);
657 
658  NCells--;
659 
@@ -760,7 +760,7 @@
662 }
663 
664 template<typename Cell_Type, typename Data_Type> inline void BArray<Cell_Type, Data_Type>:: insert_cell (
-
665  size_t i,
+
665  size_t i,
666  size_t j,
667  const Cell< Cell_Type> & v,
668  bool check_bounds,
@@ -768,25 +768,25 @@
670  ) {
671 
672  if (check_bounds)
-
673  out_of_range(i,j);
+
673  out_of_range(i,j);
674 
675  if (check_exists) {
676 
677  // Checking if nothing here, then we move along
-
678  if (ROW(i).size() == 0u) {
+
678  if (ROW(i).size() == 0u) {
679 
-
680  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
-
681  COL(j).emplace(i, &ROW(i)[j]);
+
680  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
+
681  COL(j).emplace(i, &ROW(i)[j]);
682  NCells++;
683  return;
684 
685  }
686 
687  // In this case, the row exists, but we are checking that the value is empty
-
688  if (ROW(i).find(j) == ROW(i).end()) {
+
688  if (ROW(i).find(j) == ROW(i).end()) {
689 
-
690  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
-
691  COL(j).emplace(i, &ROW(i)[j]);
+
690  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
+
691  COL(j).emplace(i, &ROW(i)[j]);
692  NCells++;
693 
694  } else {
@@ -796,8 +796,8 @@
698 
699  } else {
700 
-
701  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
-
702  COL(j).emplace(i, &ROW(i)[j]);
+
701  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
+
702  COL(j).emplace(i, &ROW(i)[j]);
703  NCells++;
704 
705  }
@@ -807,7 +807,7 @@
709 }
710 
711 template<typename Cell_Type, typename Data_Type> inline void BArray<Cell_Type, Data_Type>:: insert_cell (
-
712  size_t i,
+
712  size_t i,
713  size_t j,
714  Cell< Cell_Type> && v,
715  bool check_bounds,
@@ -815,25 +815,25 @@
717  ) {
718 
719  if (check_bounds)
-
720  out_of_range(i,j);
+
720  out_of_range(i,j);
721 
722  if (check_exists) {
723 
724  // Checking if nothing here, then we move along
-
725  if (ROW(i).size() == 0u) {
+
725  if (ROW(i).size() == 0u) {
726 
-
727  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
-
728  COL(j).emplace(i, &ROW(i)[j]);
+
727  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
+
728  COL(j).emplace(i, &ROW(i)[j]);
729  NCells++;
730  return;
731 
732  }
733 
734  // In this case, the row exists, but we are checking that the value is empty
-
735  if (ROW(i).find(j) == ROW(i).end()) {
+
735  if (ROW(i).find(j) == ROW(i).end()) {
736 
-
737  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
-
738  COL(j).emplace(i, &ROW(i)[j]);
+
737  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
+
738  COL(j).emplace(i, &ROW(i)[j]);
739  NCells++;
740 
741  } else {
@@ -843,8 +843,8 @@
745 
746  } else {
747 
-
748  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
-
749  COL(j).emplace(i, &ROW(i)[j]);
+
748  ROW(i).insert(std::pair< size_t, Cell<Cell_Type>>(j, v));
+
749  COL(j).emplace(i, &ROW(i)[j]);
750  NCells++;
751 
752  }
@@ -854,14 +854,14 @@
756 }
757 
758 template<typename Cell_Type, typename Data_Type> inline void BArray<Cell_Type, Data_Type>:: insert_cell (
-
759  size_t i,
+
759  size_t i,
760  size_t j,
761  Cell_Type v,
762  bool check_bounds,
763  bool check_exists
764 ) {
765 
-
766  return insert_cell(i, j, Cell<Cell_Type>(v, visited), check_bounds, check_exists);
+
766  return insert_cell(i, j, Cell<Cell_Type>(v, visited), check_bounds, check_exists);
767 
768 }
769 
@@ -969,31 +969,31 @@
871 }
872 
873 template<typename Cell_Type, typename Data_Type> inline void BArray<Cell_Type, Data_Type>:: toggle_cell (
-
874  size_t i,
+
874  size_t i,
875  size_t j,
876  bool check_bounds,
877  int check_exists
878 ) {
879 
880  if (check_bounds)
-
881  out_of_range(i, j);
+
881  out_of_range(i, j);
882 
883  if (check_exists == EXISTS::UKNOWN) {
884 
-
885  if (is_empty(i, j, false)) {
-
886  insert_cell(i, j, BArray<Cell_Type, Data_Type>::Cell_default, false, false);
-
887  ROW(i)[j].visited = visited;
+
885  if (is_empty(i, j, false)) {
+
886  insert_cell(i, j, BArray<Cell_Type, Data_Type>::Cell_default, false, false);
+
887  ROW(i)[j].visited = visited;
888  } else
-
889  rm_cell(i, j, false, false);
+
889  rm_cell(i, j, false, false);
890 
891  } else if (check_exists == EXISTS::AS_ONE) {
892 
-
893  rm_cell(i, j, false, false);
+
893  rm_cell(i, j, false, false);
894 
895  } else if (check_exists == EXISTS::AS_ZERO) {
896 
-
897  insert_cell(i, j, BArray<Cell_Type,Data_Type>::Cell_default, false, false);
-
898  ROW(i)[j].visited = visited;
+
897  insert_cell(i, j, BArray<Cell_Type,Data_Type>::Cell_default, false, false);
+
898  ROW(i)[j].visited = visited;
899 
900  }
901 
@@ -1013,8 +1013,8 @@
915  }
916 
917  bool move0=true, move1=true;
-
918  if (ROW(i0).size() == 0u) move0 = false;
-
919  if (ROW(i1).size() == 0u) move1 = false;
+
918  if (ROW(i0).size() == 0u) move0 = false;
+
919  if (ROW(i1).size() == 0u) move1 = false;
920 
921  if (!move0 && !move1)
922  return;
@@ -1025,22 +1025,22 @@
927 
928  // Delete the thing
929  if (move0)
-
930  for (auto& i: row(i1, false))
-
931  COL(i.first).erase(i0);
+
930  for (auto& i: row(i1, false))
+
931  COL(i.first).erase(i0);
932 
933  if (move1)
-
934  for (auto& i: row(i0, false))
-
935  COL(i.first).erase(i1);
+
934  for (auto& i: row(i0, false))
+
935  COL(i.first).erase(i1);
936 
937  // Now, point to the thing, if it has something to point at. Recall that
938  // the indices swapped.
939  if (move1)
-
940  for (auto& i: row(i0, false))
-
941  COL(i.first)[i0] = &ROW(i0)[i.first];
+
940  for (auto& i: row(i0, false))
+
941  COL(i.first)[i0] = &ROW(i0)[i.first];
942 
943  if (move0)
-
944  for (auto& i: row(i1, false))
-
945  COL(i.first)[i1] = &ROW(i1)[i.first];
+
944  for (auto& i: row(i1, false))
+
945  COL(i.first)[i1] = &ROW(i1)[i.first];
946 
947  return;
948 
@@ -1060,8 +1060,8 @@
962 
963  // Which ones need to be checked
964  bool check0 = true, check1 = true;
-
965  if (COL(j0).size() == 0u) check0 = false;
-
966  if (COL(j1).size() == 0u) check1 = false;
+
965  if (COL(j0).size() == 0u) check0 = false;
+
966  if (COL(j1).size() == 0u) check1 = false;
967 
968  if (check0 && check1) {
969 
@@ -1119,21 +1119,21 @@
1021 }
1022 
1023 template<typename Cell_Type, typename Data_Type> inline void BArray<Cell_Type, Data_Type>:: zero_row (
-
1024  size_t i,
+
1024  size_t i,
1025  bool check_bounds
1026 ) {
1027 
1028  if (check_bounds)
-
1029  out_of_range(i, 0u);
+
1029  out_of_range(i, 0u);
1030 
1031  // Nothing to do
-
1032  if (ROW(i).size() == 0u)
+
1032  if (ROW(i).size() == 0u)
1033  return;
1034 
1035  // Else, remove all elements
-
1036  auto row0 = ROW(i);
+
1036  auto row0 = ROW(i);
1037  for (auto row = row0.begin(); row != row0.end(); ++row)
-
1038  rm_cell(i, row->first, false, false);
+
1038  rm_cell(i, row->first, false, false);
1039 
1040  return;
1041 
@@ -1148,7 +1148,7 @@
1050  out_of_range(0u, j);
1051 
1052  // Nothing to do
-
1053  if (COL(j).size() == 0u)
+
1053  if (COL(j).size() == 0u)
1054  return;
1055 
1056  // Else, remove all elements
@@ -1171,37 +1171,37 @@
1073 
1074  // size_t N0 = N, M0 = M;
1075  int status;
-
1076  for (size_t i = 0u; i < N; ++i)
+
1076  for (size_t i = 0u; i < N; ++i)
1077  {
1078 
1079  // Do we need to move anything?
-
1080  if (ROW(i).size() == 0u)
+
1080  if (ROW(i).size() == 0u)
1081  continue;
1082 
1083  // We now iterate changing rows
-
1084  Row_type<Cell_Type> row = ROW(i);
+
1084  Row_type<Cell_Type> row = ROW(i);
1085  for (auto col = row.begin(); col != row.end(); ++col)
1086  {
1087 
1088  // Skip if in the diagoal
-
1089  if (i == col->first)
+
1089  if (i == col->first)
1090  {
-
1091  ROW(i)[i].visited = visited;
+
1091  ROW(i)[i].visited = visited;
1092  continue;
1093  }
1094 
1095  // We have not visited this yet, we need to change that
-
1096  if (ROW(i)[col->first].visited != visited)
+
1096  if (ROW(i)[col->first].visited != visited)
1097  {
1098 
1099  // First, swap the contents
-
1100  swap_cells(i, col->first, col->first, i, false, CHECK::TWO, &status);
+
1100  swap_cells(i, col->first, col->first, i, false, CHECK::TWO, &status);
1101 
1102  // Changing the switch
1103  if (status == EXISTS::BOTH)
-
1104  ROW(i)[col->first].visited = visited;
+
1104  ROW(i)[col->first].visited = visited;
1105 
-
1106  ROW(col->first)[i].visited = visited;
+
1106  ROW(col->first)[i].visited = visited;
1107 
1108  }
1109 
@@ -1237,8 +1237,8 @@
1139 
1140  } else {
1141 
-
1142  for (size_t i = 0u; i < N; ++i)
-
1143  zero_row(i, false);
+
1142  for (size_t i = 0u; i < N; ++i)
+
1143  zero_row(i, false);
1144 
1145  }
1146 
@@ -1253,8 +1253,8 @@
1155 
1156  // Removing rows
1157  if (N_ < N)
-
1158  for (size_t i = N_; i < N; ++i)
-
1159  zero_row(i, false);
+
1158  for (size_t i = N_; i < N; ++i)
+
1159  zero_row(i, false);
1160 
1161  // Removing cols
1162  if (M_ < M)
@@ -1280,11 +1280,11 @@
1182 template<typename Cell_Type, typename Data_Type>
1183 inline void BArray<Cell_Type, Data_Type>:: reserve () {
1184 #ifdef BARRAY_USE_UNORDERED_MAP
-
1185  for (size_t i = 0u; i < N; i++)
-
1186  ROW(i).reserve(M);
+
1185  for (size_t i = 0u; i < N; i++)
+
1186  ROW(i).reserve(M);
1187 
-
1188  for (size_t i = 0u; i < M; i++)
-
1189  COL(i).reserve(N);
+
1188  for (size_t i = 0u; i < M; i++)
+
1189  COL(i).reserve(N);
1190 #endif
1191  return;
1192 
@@ -1325,15 +1325,15 @@
1227  printf_barry(fmt, args);
1228  va_end(args);
1229 
-
1230  for (size_t i = 0u; i < nrow; ++i)
+
1230  for (size_t i = 0u; i < nrow; ++i)
1231  {
1232 
1233  #ifdef BARRY_DEBUG_LEVEL
1234  #if BARRY_DEBUG_LEVEL > 1
-
1235  printf_barry("%s [%3i,]", BARRY_DEBUG_HEADER, i);
+
1235  printf_barry("%s [%3i,]", BARRY_DEBUG_HEADER, i);
1236  #endif
1237  #else
-
1238  printf_barry("[%3i,] ", i);
+
1238  printf_barry("[%3i,] ", i);
1239  #endif
1240  for (size_t j = 0u; j < ncol; ++j) {
1241  if (this->is_empty(i, j, false))
@@ -1416,13 +1416,10 @@
Entries
A wrapper class to store source, target, val from a BArray object.
Definition: typedefs.hpp:78
res
return res
Definition: counters-meat.hpp:265
data
Data_Type &&counter_ data(std::move(counter_.data))
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
-
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
-
insert_cell
A insert_cell(i, j, A.default_val(), true, false)
-
r
double r
Definition: model-meat.hpp:1291
-
size
return arrays2support size() - 1u
+
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
CHECK::TWO
const int TWO
Definition: typedefs.hpp:30
CHECK::NONE
const int NONE
Definition: typedefs.hpp:28
CHECK::BOTH
const int BOTH
Definition: typedefs.hpp:27
@@ -1444,7 +1441,7 @@ diff --git a/barraycell-bones_8hpp.html b/barraycell-bones_8hpp.html index 3a9b766d8..3808c9281 100644 --- a/barraycell-bones_8hpp.html +++ b/barraycell-bones_8hpp.html @@ -123,7 +123,7 @@ diff --git a/barraycell-bones_8hpp_source.html b/barraycell-bones_8hpp_source.html index e0678dffe..b195d424e 100644 --- a/barraycell-bones_8hpp_source.html +++ b/barraycell-bones_8hpp_source.html @@ -112,12 +112,12 @@
14 public:
15 
16  BArrayCell(BArray<Cell_Type,Data_Type> * Array_, size_t i_, size_t j_, bool check_bounds = true) :
-
17  Array(Array_), i(i_), j(j_) {
+
17  Array(Array_), i(i_), j(j_) {
18 
19  if (check_bounds)
20  {
21 
-
22  if (i >= Array->nrow())
+
22  if (i >= Array->nrow())
23  throw std::length_error("Row out of range.");
24  if (j >= Array->ncol())
25  throw std::length_error("Col out of range.");
@@ -151,10 +151,10 @@
53 public:
54 
55  BArrayCell_const(const BArray<Cell_Type,Data_Type> * Array_, size_t i_, size_t j_, bool check_bounds = true) :
-
56  Array(Array_), i(i_), j(j_) {
+
56  Array(Array_), i(i_), j(j_) {
57  if (check_bounds) {
58 
-
59  if (i >= Array->nrow())
+
59  if (i >= Array->nrow())
60  throw std::length_error("Row out of range.");
61  if (j >= Array->ncol())
62  throw std::length_error("Col out of range.");
@@ -196,15 +196,15 @@
BArray::ncol
size_t ncol() const noexcept
BArray::nrow
size_t nrow() const noexcept
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
diff --git a/barraycell-meat_8hpp.html b/barraycell-meat_8hpp.html index 902a859fc..9798b0bc4 100644 --- a/barraycell-meat_8hpp.html +++ b/barraycell-meat_8hpp.html @@ -113,7 +113,7 @@ diff --git a/barraycell-meat_8hpp_source.html b/barraycell-meat_8hpp_source.html index e75b2bda4..35185cf9a 100644 --- a/barraycell-meat_8hpp_source.html +++ b/barraycell-meat_8hpp_source.html @@ -104,10 +104,10 @@
6 template<typename Cell_Type,typename Data_Type>
7 inline void BArrayCell<Cell_Type,Data_Type>::operator=(const Cell_Type & val) {
8 
-
9  if (Array->is_empty(i, j, false)) {
-
10  Array->insert_cell(i, j, val, false, false);
+
9  if (Array->is_empty(i, j, false)) {
+
10  Array->insert_cell(i, j, val, false, false);
11  } else {
-
12  Array->el_ij.at(i).at(j).value = val;
+
12  Array->el_ij.at(i).at(j).value = val;
13  }
14 
15 }
@@ -115,10 +115,10 @@
17 template<typename Cell_Type,typename Data_Type>
18 inline void BArrayCell<Cell_Type,Data_Type>::operator+=(const Cell_Type & val) {
19 
-
20  if (Array->is_empty(i, j, false)) {
-
21  Array->insert_cell(i, j, val, false, false);
+
20  if (Array->is_empty(i, j, false)) {
+
21  Array->insert_cell(i, j, val, false, false);
22  } else {
-
23  Array->el_ij.at(i).at(j).value += val;
+
23  Array->el_ij.at(i).at(j).value += val;
24  }
25 
26 }
@@ -126,10 +126,10 @@
28 template<typename Cell_Type,typename Data_Type>
29 inline void BArrayCell<Cell_Type,Data_Type>::operator-=(const Cell_Type & val) {
30 
-
31  if (Array->is_empty(i, j, false)) {
-
32  Array->insert_cell(i, j, -val, false, false);
+
31  if (Array->is_empty(i, j, false)) {
+
32  Array->insert_cell(i, j, -val, false, false);
33  } else {
-
34  Array->el_ij.at(i).at(j).value -= val;
+
34  Array->el_ij.at(i).at(j).value -= val;
35  }
36 
37 }
@@ -137,8 +137,8 @@
39 template<typename Cell_Type,typename Data_Type>
40 inline void BArrayCell<Cell_Type,Data_Type>::operator*=(const Cell_Type & val) {
41 
-
42  if (!Array->is_empty(i, j, false)) {
-
43  Array->el_ij.at(i).at(j).value *= val;
+
42  if (!Array->is_empty(i, j, false)) {
+
43  Array->el_ij.at(i).at(j).value *= val;
44  }
45 
46 }
@@ -146,30 +146,30 @@
48 template<typename Cell_Type,typename Data_Type>
49 inline void BArrayCell<Cell_Type,Data_Type>::operator/=(const Cell_Type & val) {
50 
-
51  if (!Array->is_empty(i, j, false)) {
-
52  Array->el_ij.at(i).at(j).value /= val;
+
51  if (!Array->is_empty(i, j, false)) {
+
52  Array->el_ij.at(i).at(j).value /= val;
53  }
54 
55 }
56 
57 template<typename Cell_Type,typename Data_Type>
58 inline BArrayCell<Cell_Type,Data_Type>::operator Cell_Type() const {
-
59  return Array->get_cell(i, j, false);
+
59  return Array->get_cell(i, j, false);
60 }
61 
62 template<typename Cell_Type,typename Data_Type>
63 inline bool BArrayCell<Cell_Type,Data_Type>::operator==(const Cell_Type & val) const {
-
64  return Array->get_cell(i, j, false) == static_cast<Cell_Type>(val);
+
64  return Array->get_cell(i, j, false) == static_cast<Cell_Type>(val);
65 }
66 
67 template<typename Cell_Type,typename Data_Type>
68 inline BArrayCell_const<Cell_Type,Data_Type>::operator Cell_Type() const {
-
69  return Array->get_cell(i, j, false);
+
69  return Array->get_cell(i, j, false);
70 }
71 
72 template<typename Cell_Type,typename Data_Type>
73 inline bool BArrayCell_const<Cell_Type,Data_Type>::operator==(const Cell_Type & val) const {
-
74  return Array->get_cell(i, j, false) == static_cast<Cell_Type>(val);
+
74  return Array->get_cell(i, j, false) == static_cast<Cell_Type>(val);
75 }
76 
77 template<typename Cell_Type,typename Data_Type>
@@ -179,22 +179,22 @@
81 
82 template<typename Cell_Type,typename Data_Type>
83 inline bool BArrayCell_const<Cell_Type,Data_Type>::operator<(const Cell_Type & val) const {
-
84  return Array->get_cell(i, j, false) < static_cast<Cell_Type>(val);
+
84  return Array->get_cell(i, j, false) < static_cast<Cell_Type>(val);
85 }
86 
87 template<typename Cell_Type,typename Data_Type>
88 inline bool BArrayCell_const<Cell_Type,Data_Type>::operator>(const Cell_Type & val) const {
-
89  return Array->get_cell(i, j, false) > static_cast<Cell_Type>(val);
+
89  return Array->get_cell(i, j, false) > static_cast<Cell_Type>(val);
90 }
91 
92 template<typename Cell_Type,typename Data_Type>
93 inline bool BArrayCell_const<Cell_Type,Data_Type>::operator<=(const Cell_Type & val) const {
-
94  return Array->get_cell(i, j, false) <= static_cast<Cell_Type>(val);
+
94  return Array->get_cell(i, j, false) <= static_cast<Cell_Type>(val);
95 }
96 
97 template<typename Cell_Type,typename Data_Type>
98 inline bool BArrayCell_const<Cell_Type,Data_Type>::operator>=(const Cell_Type & val) const {
-
99  return Array->get_cell(i, j, false) >= static_cast<Cell_Type>(val);
+
99  return Array->get_cell(i, j, false) >= static_cast<Cell_Type>(val);
100 }
101 
102 #endif
@@ -212,15 +212,15 @@
BArrayCell::operator/=
void operator/=(const Cell_Type &val)
Definition: barraycell-meat.hpp:49
BArrayCell::operator*=
void operator*=(const Cell_Type &val)
Definition: barraycell-meat.hpp:40
BArrayCell::operator=
void operator=(const Cell_Type &val)
Definition: barraycell-meat.hpp:7
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
diff --git a/barraydense-bones_8hpp.html b/barraydense-bones_8hpp.html index 80bc61b68..bb3e41293 100644 --- a/barraydense-bones_8hpp.html +++ b/barraydense-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/barraydense-bones_8hpp_source.html b/barraydense-bones_8hpp_source.html index d2052ff63..c87434231 100644 --- a/barraydense-bones_8hpp_source.html +++ b/barraydense-bones_8hpp_source.html @@ -183,7 +183,7 @@
122  // since those are independent.
123  // BArrayDense(BArrayDense & A);
124 
-
132  void set_data(Data_Type * data_, bool delete_data_ = false);
+
132  void set_data(Data_Type * data_, bool delete_data_ = false);
133  Data_Type * D_ptr();
134  const Data_Type * D_ptr() const;
135  Data_Type & D();
@@ -191,22 +191,22 @@
138 
139  // Function to access the elements
140  // bool check_cell
-
141  void out_of_range(size_t i, size_t j) const;
-
142  Cell_Type get_cell(size_t i, size_t j, bool check_bounds = true) const;
-
143  std::vector< Cell_Type > get_col_vec(size_t i, bool check_bounds = true) const;
-
144  std::vector< Cell_Type > get_row_vec(size_t i, bool check_bounds = true) const;
-
145  void get_col_vec(std::vector< Cell_Type > * x, size_t i, bool check_bounds = true) const;
-
146  void get_row_vec(std::vector< Cell_Type > * x, size_t i, bool check_bounds = true) const;
+
141  void out_of_range(size_t i, size_t j) const;
+
142  Cell_Type get_cell(size_t i, size_t j, bool check_bounds = true) const;
+
143  std::vector< Cell_Type > get_col_vec(size_t i, bool check_bounds = true) const;
+
144  std::vector< Cell_Type > get_row_vec(size_t i, bool check_bounds = true) const;
+
145  void get_col_vec(std::vector< Cell_Type > * x, size_t i, bool check_bounds = true) const;
+
146  void get_row_vec(std::vector< Cell_Type > * x, size_t i, bool check_bounds = true) const;
147 
-
148  BArrayDenseRow<Cell_Type,Data_Type> & row(size_t i, bool check_bounds = true);
-
149  const BArrayDenseRow_const<Cell_Type,Data_Type> row(size_t i, bool check_bounds = true) const;
+
148  BArrayDenseRow<Cell_Type,Data_Type> & row(size_t i, bool check_bounds = true);
+
149  const BArrayDenseRow_const<Cell_Type,Data_Type> row(size_t i, bool check_bounds = true) const;
150 
151  BArrayDenseCol<Cell_Type,Data_Type> & col(size_t j, bool check_bounds = true);
152  const BArrayDenseCol_const<Cell_Type,Data_Type> col(size_t j, bool check_bounds = true) const;
153 
163  Entries<Cell_Type> get_entries() const;
164 
-
173  bool is_empty(size_t i, size_t j, bool check_bounds = true) const;
+
173  bool is_empty(size_t i, size_t j, bool check_bounds = true) const;
174  size_t nrow() const noexcept;
175  size_t ncol() const noexcept;
176  size_t nnozero() const noexcept;
@@ -214,14 +214,14 @@
179 
190  BArrayDense<Cell_Type,Data_Type> & operator+=(const std::pair<size_t, size_t> & coords);
191  BArrayDense<Cell_Type,Data_Type> & operator-=(const std::pair<size_t, size_t> & coords);
-
192  BArrayDenseCell<Cell_Type,Data_Type> operator()(size_t i, size_t j, bool check_bounds = true);
-
193  const Cell_Type operator()(size_t i, size_t j, bool check_bounds = true) const;
+
192  BArrayDenseCell<Cell_Type,Data_Type> operator()(size_t i, size_t j, bool check_bounds = true);
+
193  const Cell_Type operator()(size_t i, size_t j, bool check_bounds = true) const;
194 
-
195  void rm_cell(size_t i, size_t j, bool check_bounds = true, bool check_exists = true);
+
195  void rm_cell(size_t i, size_t j, bool check_bounds = true, bool check_exists = true);
196 
-
197  void insert_cell(size_t i, size_t j, const Cell< Cell_Type > & v, bool check_bounds, bool);
+
197  void insert_cell(size_t i, size_t j, const Cell< Cell_Type > & v, bool check_bounds, bool);
198  // void insert_cell(size_t i, size_t j, Cell< Cell_Type > && v, bool check_bounds, bool check_exists);
-
199  void insert_cell(size_t i, size_t j, Cell_Type v, bool check_bounds, bool);
+
199  void insert_cell(size_t i, size_t j, Cell_Type v, bool check_bounds, bool);
200 
201  void swap_cells(
202  size_t i0, size_t j0, size_t i1, size_t j1, bool check_bounds = true,
@@ -229,13 +229,13 @@
204  int * report = nullptr
205  );
206 
-
207  void toggle_cell(size_t i, size_t j, bool check_bounds = true, int check_exists = EXISTS::UKNOWN);
-
208  void toggle_lock(size_t i, size_t j, bool check_bounds = true);
+
207  void toggle_cell(size_t i, size_t j, bool check_bounds = true, int check_exists = EXISTS::UKNOWN);
+
208  void toggle_lock(size_t i, size_t j, bool check_bounds = true);
210 
213  void swap_rows(size_t i0, size_t i1, bool check_bounds = true);
214  void swap_cols(size_t j0, size_t j1, bool check_bounds = true);
215 
-
216  void zero_row(size_t i, bool check_bounds = true);
+
216  void zero_row(size_t i, bool check_bounds = true);
217  void zero_col(size_t j, bool check_bounds = true);
219 
220  void transpose();
@@ -271,8 +271,8 @@
256  bool is_dense() const noexcept {return dense;};
257 
258  const std::vector< Cell_Type > & get_data() const;
-
259  const Cell_Type rowsum(size_t i) const;
-
260  const Cell_Type colsum(size_t i) const;
+
259  const Cell_Type rowsum(size_t i) const;
+
260  const Cell_Type colsum(size_t i) const;
261 };
262 
263 #endif
@@ -326,10 +326,10 @@
Cell
Entries in BArray. For now, it only has two members:
Definition: cell-bones.hpp:10
Entries
A wrapper class to store source, target, val from a BArray object.
Definition: typedefs.hpp:78
data
Data_Type &&counter_ data(std::move(counter_.data))
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
-
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
+
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
CHECK
Integer constants used to specify which cell should be check.
Definition: typedefs.hpp:26
CHECK::BOTH
const int BOTH
Definition: typedefs.hpp:27
EXISTS
Integer constants used to specify which cell should be check to exist or not.
Definition: typedefs.hpp:37
@@ -340,7 +340,7 @@ diff --git a/barraydense-meat-operators_8hpp.html b/barraydense-meat-operators_8hpp.html index 53cdeb5ba..e6ff18d8b 100644 --- a/barraydense-meat-operators_8hpp.html +++ b/barraydense-meat-operators_8hpp.html @@ -117,15 +117,15 @@   #define BDENSE_TEMPLATE_ARGS()   <typename Cell_Type, typename Data_Type>   -#define BDENSE_TEMPLATE(a, b)    template BDENSE_TEMPLATE_ARGS() inline a BDENSE_TYPE()::b +#define BDENSE_TEMPLATE(a, b)    template BDENSE_TEMPLATE_ARGS() inline a BDENSE_TYPE()::b   -#define ROW(a)   this->el_ij[a] +#define ROW(a)   this->el_ij[a]   -#define COL(a)   this->el_ji[a] +#define COL(a)   this->el_ji[a]   -#define POS(a, b)   (b)*N + (a) +#define POS(a, b)   (b)*N + (a)   -#define POS_N(a, b, c)   (b)*(c) + (a) +#define POS_N(a, b, c)   (b)*(c) + (a)   - + @@ -165,7 +165,7 @@

BDENSE_TEMPLATE_ARGS() inline a BDENSE_TYPE()::b +

@@ -154,7 +154,7 @@

#define BDENSE_TEMPLATE

 (  a, a,
    template BDENSE_TEMPLATE_ARGS() inline a BDENSE_TYPE()::b
@@ -222,8 +222,8 @@

#define COL (   - a) -    this->el_ji[a] + a) +    this->el_ji[a]

@@ -242,7 +242,7 @@

#define POS (   - a, + a, @@ -253,7 +253,7 @@

a) +    (b)*N + (a)

@@ -272,7 +272,7 @@

#define POS_N (   - a, + a, @@ -289,7 +289,7 @@

a) +    (b)*(c) + (a)

@@ -308,8 +308,8 @@

#define ROW (   - a) -    this->el_ij[a] + a) +    this->el_ij[a]

@@ -481,7 +481,7 @@

  • include
  • barry
  • barraydense-meat-operators.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/barraydense-meat-operators_8hpp_source.html b/barraydense-meat-operators_8hpp_source.html index b2be50e27..4e75ccd68 100644 --- a/barraydense-meat-operators_8hpp_source.html +++ b/barraydense-meat-operators_8hpp_source.html @@ -136,9 +136,9 @@
38  // Must be compatible
39  checkdim_(*this, rhs);
40 
-
41  for (size_t i = 0u; i < nrow(); ++i)
+
41  for (size_t i = 0u; i < nrow(); ++i)
42  for (size_t j = 0u; j < ncol(); ++j)
-
43  this->operator()(i, j) += rhs.get_cell(i, j);
+
43  this->operator()(i, j) += rhs.get_cell(i, j);
44 
45  return *this;
46 }
@@ -147,9 +147,9 @@
49  const Cell_Type& rhs
50 ) {
51 
-
52  for (size_t i = 0u; i < nrow(); ++i) {
+
52  for (size_t i = 0u; i < nrow(); ++i) {
53  for (size_t j = 0u; j < ncol(); ++j) {
-
54  this->operator()(i, j) += rhs;
+
54  this->operator()(i, j) += rhs;
55  }
56  }
57 
@@ -163,9 +163,9 @@
65  // Must be compatible
66  checkdim_(*this, rhs);
67 
-
68  for (size_t i = 0u; i < nrow(); ++i) {
+
68  for (size_t i = 0u; i < nrow(); ++i) {
69  for (size_t j = 0u; j < ncol(); ++j) {
-
70  this->operator()(i, j) -= rhs.get_cell(i, j);
+
70  this->operator()(i, j) -= rhs.get_cell(i, j);
71  }
72  }
73 
@@ -176,9 +176,9 @@
78  const Cell_Type& rhs
79 ) {
80 
-
81  for (size_t i = 0u; i < nrow(); ++i)
+
81  for (size_t i = 0u; i < nrow(); ++i)
82  for (size_t j = 0u; j < ncol(); ++j)
-
83  this->operator()(i, j) -= rhs;
+
83  this->operator()(i, j) -= rhs;
84 
85 
86 
@@ -189,9 +189,9 @@
91  const Cell_Type& rhs
92 ) {
93 
-
94  for (size_t i = 0u; i < nrow(); ++i)
+
94  for (size_t i = 0u; i < nrow(); ++i)
95  for (size_t j = 0u; j < nrow(); ++j)
-
96  el[POS(i, j)] *= rhs;
+
96  el[POS(i, j)] *= rhs;
97 
98  return *this;
99 }
@@ -200,9 +200,9 @@
102  const Cell_Type& rhs
103 ) {
104 
-
105  for (size_t i = 0u; i < nrow(); ++i)
+
105  for (size_t i = 0u; i < nrow(); ++i)
106  for (size_t j = 0u; j < nrow(); ++j)
-
107  el[POS(i, j)] /= rhs;
+
107  el[POS(i, j)] /= rhs;
108 
109  return *this;
110 }
@@ -223,15 +223,15 @@
BDENSE_TEMPLATE_ARGS
#define BDENSE_TEMPLATE_ARGS()
Definition: barraydense-meat-operators.hpp:9
POS
#define POS(a, b)
Definition: barraydense-meat-operators.hpp:16
BDENSE_TYPE
#define BDENSE_TYPE()
Definition: barraydense-meat-operators.hpp:7
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
diff --git a/barraydense-meat_8hpp.html b/barraydense-meat_8hpp.html index ad9fb6bd5..7a9174594 100644 --- a/barraydense-meat_8hpp.html +++ b/barraydense-meat_8hpp.html @@ -112,13 +112,13 @@ - + - + - + - + @@ -134,8 +134,8 @@

#define COL

- - + +

Macros

#define ROW(a)   this->el_ij[a]
#define ROW(a)   this->el_ij[a]
 
#define COL(a)   this->el_ji[a]
#define COL(a)   this->el_ji[a]
 
#define POS(a, b)   (b)*N + (a)
#define POS(a, b)   (b)*N + (a)
 
#define POS_N(a, b, c)   (b)*(c) + (a)
#define POS_N(a, b, c)   (b)*(c) + (a)
 
#define ZERO_CELL   static_cast<Cell_Type>(0.0)
 
(  a)   this->el_ji[a]a)   this->el_ji[a]
@@ -154,7 +154,7 @@

#define POS (   - a, + a, @@ -165,7 +165,7 @@

a) +    (b)*N + (a)

@@ -184,7 +184,7 @@

#define POS_N (   - a, + a, @@ -201,7 +201,7 @@

a) +    (b)*(c) + (a)

@@ -220,8 +220,8 @@

#define ROW (   - a) -    this->el_ij[a] + a) +    this->el_ij[a]

@@ -252,7 +252,7 @@

  • include
  • barry
  • barraydense-meat.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/barraydense-meat_8hpp_source.html b/barraydense-meat_8hpp_source.html index 89fcbb44b..ae95cf95d 100644 --- a/barraydense-meat_8hpp_source.html +++ b/barraydense-meat_8hpp_source.html @@ -153,20 +153,20 @@
55  el_colsums.resize(M, ZERO_CELL);
56 
57  // Writing the data
-
58  for (size_t i = 0u; i < source.size(); ++i)
+
58  for (size_t i = 0u; i < source.size(); ++i)
59  {
60 
61  // Checking range
-
62  bool empty = is_empty(source[i], target[i], true);
+
62  bool empty = is_empty(source[i], target[i], true);
63  if (add && !empty)
64  {
65 
-
66  Cell_Type tmp = el[POS(source[i], target[i])];
+
66  Cell_Type tmp = el[POS(source[i], target[i])];
67 
-
68  el_rowsums[source[i]] += (value[i] - tmp);
-
69  el_colsums[target[i]] += (value[i] - tmp);
+
68  el_rowsums[source[i]] += (value[i] - tmp);
+
69  el_colsums[target[i]] += (value[i] - tmp);
70 
-
71  el[POS(source[i], target[i])] += value[i];
+
71  el[POS(source[i], target[i])] += value[i];
72 
73  continue;
74 
@@ -175,10 +175,10 @@
77  if (!empty)
78  throw std::logic_error("The value already exists. Use 'add = true'.");
79 
-
80  el[POS(source[i], target[i])] = value[i];
+
80  el[POS(source[i], target[i])] = value[i];
81 
-
82  el_rowsums[source[i]] += value[i];
-
83  el_colsums[target[i]] += value[i];
+
82  el_rowsums[source[i]] += value[i];
+
83  el_colsums[target[i]] += value[i];
84 
85 
86  }
@@ -212,20 +212,20 @@
114  el_colsums.resize(M, ZERO_CELL);
115 
116  // Writing the data
-
117  for (size_t i = 0u; i < source.size(); ++i)
+
117  for (size_t i = 0u; i < source.size(); ++i)
118  {
119 
120  // Checking range
-
121  bool empty = is_empty(source[i], target[i], true);
+
121  bool empty = is_empty(source[i], target[i], true);
122  if (add && !empty)
123  {
124 
-
125  Cell_Type tmp = el[POS(source[i], target[i])];
+
125  Cell_Type tmp = el[POS(source[i], target[i])];
126 
-
127  el_rowsums[source[i]] += (value[i] - tmp);
-
128  el_colsums[target[i]] += (value[i] - tmp);
+
127  el_rowsums[source[i]] += (value[i] - tmp);
+
128  el_colsums[target[i]] += (value[i] - tmp);
129 
-
130  el[POS(source[i], target[i])] += value[i];
+
130  el[POS(source[i], target[i])] += value[i];
131 
132  continue;
133 
@@ -234,10 +234,10 @@
136  if (!empty)
137  throw std::logic_error("The value already exists. Use 'add = true'.");
138 
-
139  el[POS(source[i], target[i])] = value[i];
+
139  el[POS(source[i], target[i])] = value[i];
140 
-
141  el_rowsums[source[i]] += value[i];
-
142  el_colsums[target[i]] += value[i];
+
141  el_rowsums[source[i]] += value[i];
+
142  el_colsums[target[i]] += value[i];
143 
144 
145  }
@@ -430,14 +430,14 @@
332 
333 template<typename Cell_Type, typename Data_Type>
334 inline void BArrayDense<Cell_Type, Data_Type>::set_data (
-
335  Data_Type * data_,
+
335  Data_Type * data_,
336  bool delete_data_
337 ) {
338 
339  if ((data != nullptr) && delete_data)
340  delete data;
341 
-
342  data = data_;
+
342  data = data_;
343  delete_data = delete_data_;
344 
345  return;
@@ -466,13 +466,13 @@
368 
369 template<typename Cell_Type, typename Data_Type>
370 inline void BArrayDense<Cell_Type, Data_Type>::out_of_range (
-
371  size_t i,
+
371  size_t i,
372  size_t j
373 ) const {
374 
375  if (i >= N)
376  {
-
377  std::string err_msg = "The row is out of range: " + std::to_string(i) + " >= " + std::to_string(N);
+
377  std::string err_msg = "The row is out of range: " + std::to_string(i) + " >= " + std::to_string(N);
378  throw std::range_error(err_msg);
379 
380  } else if (j >= M)
@@ -487,33 +487,33 @@
389 
390 template<typename Cell_Type, typename Data_Type>
391 inline Cell_Type BArrayDense<Cell_Type, Data_Type>::get_cell (
-
392  size_t i,
+
392  size_t i,
393  size_t j,
394  bool check_bounds
395 ) const {
396 
397  // Checking boundaries
398  if (check_bounds)
-
399  out_of_range(i,j);
+
399  out_of_range(i,j);
400 
-
401  return el[POS(i, j)];
+
401  return el[POS(i, j)];
402 
403 }
404 
405 template<typename Cell_Type, typename Data_Type>
406 inline std::vector< Cell_Type > BArrayDense<Cell_Type, Data_Type>::get_row_vec (
-
407  size_t i,
+
407  size_t i,
408  bool check_bounds
409 ) const {
410 
411  // Checking boundaries
412  if (check_bounds)
-
413  out_of_range(i, 0u);
+
413  out_of_range(i, 0u);
414 
415  std::vector< Cell_Type > ans;
416  ans.reserve(ncol());
417  for (size_t j = 0u; j < M; ++j)
-
418  ans.push_back(el[POS(i, j)]);
+
418  ans.push_back(el[POS(i, j)]);
419 
420  return ans;
421 
@@ -521,32 +521,32 @@
423 
424 template<typename Cell_Type, typename Data_Type> inline void BArrayDense<Cell_Type, Data_Type>:: get_row_vec (
425  std::vector<Cell_Type> * x,
-
426  size_t i,
+
426  size_t i,
427  bool check_bounds
428 ) const {
429 
430  // Checking boundaries
431  if (check_bounds)
-
432  out_of_range(i, 0u);
+
432  out_of_range(i, 0u);
433 
434  for (size_t j = 0u; j < M; ++j)
-
435  x->operator[](j) = el[POS(i, j)];
+
435  x->operator[](j) = el[POS(i, j)];
436 
437 }
438 
439 template<typename Cell_Type, typename Data_Type> inline std::vector< Cell_Type > BArrayDense<Cell_Type, Data_Type>:: get_col_vec(
-
440  size_t i,
+
440  size_t i,
441  bool check_bounds
442 ) const {
443 
444  // Checking boundaries
445  if (check_bounds)
-
446  out_of_range(0u, i);
+
446  out_of_range(0u, i);
447 
448  std::vector< Cell_Type > ans;
449  ans.reserve(nrow());
450  for (size_t j = 0u; j < N; ++j)
-
451  ans.push_back(el[POS(j, i)]);
+
451  ans.push_back(el[POS(j, i)]);
452 
453  return ans;
454 
@@ -554,41 +554,41 @@
456 
457 template<typename Cell_Type, typename Data_Type> inline void BArrayDense<Cell_Type, Data_Type>:: get_col_vec (
458  std::vector<Cell_Type> * x,
-
459  size_t i,
+
459  size_t i,
460  bool check_bounds
461 ) const {
462 
463  // Checking boundaries
464  if (check_bounds)
-
465  out_of_range(0u, i);
+
465  out_of_range(0u, i);
466 
467  for (size_t j = 0u; j < N; ++j)
-
468  x->operator[](j) = el[POS(j, i)];//this->get_cell(iter->first, i, false);
+
468  x->operator[](j) = el[POS(j, i)];//this->get_cell(iter->first, i, false);
469 
470 }
471 template<typename Cell_Type, typename Data_Type>
472 inline const BArrayDenseRow_const<Cell_Type,Data_Type> BArrayDense<Cell_Type, Data_Type>::row(
-
473  size_t i,
+
473  size_t i,
474  bool check_bounds
475 ) const {
476 
477  if (check_bounds)
-
478  out_of_range(i, 0u);
+
478  out_of_range(i, 0u);
479 
-
480  return BArrayDenseRow_const<Cell_Type,Data_Type>(*this, i);
+
480  return BArrayDenseRow_const<Cell_Type,Data_Type>(*this, i);
481 
482 }
483 
484 template<typename Cell_Type, typename Data_Type>
485 inline BArrayDenseRow<Cell_Type,Data_Type> & BArrayDense<Cell_Type, Data_Type>::row(
-
486  size_t i,
+
486  size_t i,
487  bool check_bounds
488 ) {
489 
490  if (check_bounds)
-
491  out_of_range(i, 0u);
+
491  out_of_range(i, 0u);
492 
-
493  return BArrayDenseRow<Cell_Type,Data_Type>(*this, i);
+
493  return BArrayDenseRow<Cell_Type,Data_Type>(*this, i);
494 
495 }
496 
@@ -626,17 +626,17 @@
528 
529  Entries<Cell_Type> res(nzero);
530 
-
531  for (size_t i = 0u; i < N; ++i)
+
531  for (size_t i = 0u; i < N; ++i)
532  {
533  for (size_t j = 0u; j < M; ++j)
534  {
535 
-
536  if (el[POS(i, j)] != BARRY_ZERO_DENSE)
+
536  if (el[POS(i, j)] != BARRY_ZERO_DENSE)
537  {
538 
-
539  res.source.push_back(i),
+
539  res.source.push_back(i),
540  res.target.push_back(j),
-
541  res.val.push_back(el[POS(i, j)]);
+
541  res.val.push_back(el[POS(i, j)]);
542 
543  }
544 
@@ -650,15 +650,15 @@
552 }
553 
554 template<typename Cell_Type, typename Data_Type> inline bool BArrayDense<Cell_Type, Data_Type>:: is_empty(
-
555  size_t i,
+
555  size_t i,
556  size_t j,
557  bool check_bounds
558 ) const {
559 
560  if (check_bounds)
-
561  out_of_range(i, j);
+
561  out_of_range(i, j);
562 
-
563  return el[POS(i, j)] == ZERO_CELL;
+
563  return el[POS(i, j)] == ZERO_CELL;
564 
565 }
566 
@@ -691,13 +691,13 @@
593 ) {
594 
595 
-
596  size_t i = coords.first;
+
596  size_t i = coords.first;
597  size_t j = coords.second;
598 
-
599  out_of_range(i, j);
+
599  out_of_range(i, j);
600 
-
601  el[POS(i,j)] += 1;
-
602  el_rowsums[i] += 1;
+
601  el[POS(i,j)] += 1;
+
602  el_rowsums[i] += 1;
603  el_colsums[j] += 1;
604 
605  return *this;
@@ -709,15 +709,15 @@
611  const std::pair<size_t,size_t> & coords
612 ) {
613 
-
614  size_t i = coords.first;
+
614  size_t i = coords.first;
615  size_t j = coords.second;
616 
-
617  out_of_range(i, j);
+
617  out_of_range(i, j);
618 
-
619  Cell_Type old = el[POS(i,j)];
+
619  Cell_Type old = el[POS(i,j)];
620 
-
621  el[POS(i,j)] = ZERO_CELL;
-
622  el_rowsums[i] -= old;
+
621  el[POS(i,j)] = ZERO_CELL;
+
622  el_rowsums[i] -= old;
623  el_colsums[j] -= old;
624 
625  return *this;
@@ -726,32 +726,32 @@
628 
629 template<typename Cell_Type, typename Data_Type>
630 inline BArrayDenseCell<Cell_Type,Data_Type> BArrayDense<Cell_Type, Data_Type>::operator()(
-
631  size_t i,
+
631  size_t i,
632  size_t j,
633  bool check_bounds
634 ) {
635 
-
636  return BArrayDenseCell<Cell_Type,Data_Type>(this, i, j, check_bounds);
+
636  return BArrayDenseCell<Cell_Type,Data_Type>(this, i, j, check_bounds);
637 
638 }
639 
640 template<typename Cell_Type, typename Data_Type>
641 inline const Cell_Type BArrayDense<Cell_Type, Data_Type>::operator()(
-
642  size_t i,
+
642  size_t i,
643  size_t j,
644  bool check_bounds
645 ) const {
646 
647  if (check_bounds)
-
648  out_of_range(i, j);
+
648  out_of_range(i, j);
649 
-
650  return el[POS(i,j)];
+
650  return el[POS(i,j)];
651 
652 }
653 
654 template<typename Cell_Type, typename Data_Type>
655 inline void BArrayDense<Cell_Type, Data_Type>::rm_cell (
-
656  size_t i,
+
656  size_t i,
657  size_t j,
658  bool check_bounds,
659  bool check_exists
@@ -759,14 +759,14 @@
661 
662  // Checking the boundaries
663  if (check_bounds)
-
664  out_of_range(i,j);
+
664  out_of_range(i,j);
665 
666  // BARRY_UNUSED(check_exists)
667 
668  // Remove the pointer first (so it wont point to empty)
-
669  el_rowsums[i] -= el[POS(i, j)];
-
670  el_colsums[j] -= el[POS(i, j)];
-
671  el[POS(i, j)] = BARRY_ZERO_DENSE;
+
669  el_rowsums[i] -= el[POS(i, j)];
+
670  el_colsums[j] -= el[POS(i, j)];
+
671  el[POS(i, j)] = BARRY_ZERO_DENSE;
672 
673  return;
674 
@@ -774,7 +774,7 @@
676 
677 template<typename Cell_Type, typename Data_Type>
678 inline void BArrayDense<Cell_Type, Data_Type>::insert_cell (
-
679  size_t i,
+
679  size_t i,
680  size_t j,
681  const Cell< Cell_Type> & v,
682  bool check_bounds,
@@ -782,25 +782,25 @@
684 ) {
685 
686  if (check_bounds)
-
687  out_of_range(i,j);
+
687  out_of_range(i,j);
688 
-
689  if (el[POS(i,j)] == BARRY_ZERO_DENSE)
+
689  if (el[POS(i,j)] == BARRY_ZERO_DENSE)
690  {
691 
-
692  el_rowsums[i] += v.value;
+
692  el_rowsums[i] += v.value;
693  el_colsums[j] += v.value;
694 
695  }
696  else
697  {
698 
-
699  Cell_Type old = el[POS(i,j)];
-
700  el_rowsums[i] += (v.value - old);
+
699  Cell_Type old = el[POS(i,j)];
+
700  el_rowsums[i] += (v.value - old);
701  el_colsums[j] += (v.value - old);
702 
703  }
704 
-
705  el[POS(i, j)] = v.value;
+
705  el[POS(i, j)] = v.value;
706 
707  return;
708 
@@ -808,7 +808,7 @@
710 }
711 
712 template<typename Cell_Type, typename Data_Type> inline void BArrayDense<Cell_Type, Data_Type>:: insert_cell(
-
713  size_t i,
+
713  size_t i,
714  size_t j,
715  Cell_Type v,
716  bool check_bounds,
@@ -816,25 +816,25 @@
718 ) {
719 
720  if (check_bounds)
-
721  out_of_range(i,j);
+
721  out_of_range(i,j);
722 
-
723  if (el[POS(i,j)] == BARRY_ZERO_DENSE)
+
723  if (el[POS(i,j)] == BARRY_ZERO_DENSE)
724  {
725 
-
726  el_rowsums[i] += v;
+
726  el_rowsums[i] += v;
727  el_colsums[j] += v;
728 
729  }
730  else
731  {
732 
-
733  Cell_Type old = el[POS(i,j)];
-
734  el_rowsums[i] += (v - old);
+
733  Cell_Type old = el[POS(i,j)];
+
734  el_rowsums[i] += (v - old);
735  el_colsums[j] += (v - old);
736 
737  }
738 
-
739  el[POS(i, j)] = v;
+
739  el[POS(i, j)] = v;
740 
741 }
742 
@@ -868,27 +868,27 @@
770  rm_cell(i1, j1, false, false);
771 
772  // Inserting the cells by reference, these will be deleted afterwards
-
773  insert_cell(i0, j0, val1, false, false);
-
774  insert_cell(i1, j1, val0, false, false);
+
773  insert_cell(i0, j0, val1, false, false);
+
774  insert_cell(i1, j1, val0, false, false);
775 
776  return;
777 
778 }
779 
780 template<typename Cell_Type, typename Data_Type> inline void BArrayDense<Cell_Type, Data_Type>:: toggle_cell (
-
781  size_t i,
+
781  size_t i,
782  size_t j,
783  bool check_bounds,
784  int check_exists
785 ) {
786 
787  if (check_bounds)
-
788  out_of_range(i, j);
+
788  out_of_range(i, j);
789 
-
790  if (el[POS(i,j)] == ZERO_CELL)
-
791  insert_cell(i,j,1,false,false);
+
790  if (el[POS(i,j)] == ZERO_CELL)
+
791  insert_cell(i,j,1,false,false);
792  else
-
793  rm_cell(i,j,false,false);
+
793  rm_cell(i,j,false,false);
794 
795  return;
796 
@@ -941,8 +941,8 @@
843 
844  // Swapping happens naturally, need to take care of the pointers
845  // though
-
846  for (size_t i = 0u; i < N; ++i)
-
847  std::swap(el[POS(i, j0)], el[POS(i, j1)]);
+
846  for (size_t i = 0u; i < N; ++i)
+
847  std::swap(el[POS(i, j0)], el[POS(i, j1)]);
848 
849  std::swap(el_colsums[j0], el_colsums[j1]);
850 
@@ -950,19 +950,19 @@
852 }
853 
854 template<typename Cell_Type, typename Data_Type> inline void BArrayDense<Cell_Type, Data_Type>:: zero_row (
-
855  size_t i,
+
855  size_t i,
856  bool check_bounds
857  ) {
858 
859  if (check_bounds)
-
860  out_of_range(i, 0u);
+
860  out_of_range(i, 0u);
861 
-
862  if (el_rowsums[i] == ZERO_CELL)
+
862  if (el_rowsums[i] == ZERO_CELL)
863  return;
864 
865  // Else, remove all elements
866  for (size_t col = 0u; col < M; col++)
-
867  rm_cell(i, col, false, false);
+
867  rm_cell(i, col, false, false);
868 
869  return;
870 
@@ -1003,9 +1003,9 @@
905  // size_t N0 = N, M0 = M;
906  std::vector< Cell< Cell_Type > > tmp_el(std::move(el));
907  el.resize(N * M, ZERO_CELL);
-
908  for (size_t i = 0u; i < N; ++i)
+
908  for (size_t i = 0u; i < N; ++i)
909  for (size_t j = 0u; j < M; ++j)
-
910  std::swap(tmp_el[POS(i, j)], el[POS_N(j, i, M)]);
+
910  std::swap(tmp_el[POS(i, j)], el[POS_N(j, i, M)]);
911 
912  // Swapping the values
913  std::swap(N, M);
@@ -1040,10 +1040,10 @@
942  el_rowsums.resize(N_, ZERO_CELL);
943  el_colsums.resize(M_, ZERO_CELL);
944 
-
945  for (size_t i = 0u; i < N; ++i)
+
945  for (size_t i = 0u; i < N; ++i)
946  {
947  // If reached the end
-
948  if (i >= N_)
+
948  if (i >= N_)
949  break;
950 
951  for (size_t j = 0u; j < M; ++j)
@@ -1052,7 +1052,7 @@
954  if (j >= M_)
955  break;
956 
-
957  insert_cell(i, j, el_tmp[POS_N(i, j, N_)], false, false);
+
957  insert_cell(i, j, el_tmp[POS_N(i, j, N_)], false, false);
958 
959  }
960 
@@ -1085,18 +1085,18 @@
987  printf_barry(fmt, args);
988  va_end(args);
989 
-
990  for (size_t i = 0u; i < N; ++i)
+
990  for (size_t i = 0u; i < N; ++i)
991  {
992 
-
993  printf_barry("[%3li,] ", i);
+
993  printf_barry("[%3li,] ", i);
994 
995  for (size_t j = 0u; j < M; ++j)
996  {
997 
-
998  if (this->is_empty(i, j, false))
+
998  if (this->is_empty(i, j, false))
999  printf_barry(" . ");
1000  else
-
1001  printf_barry(" %.2f ", static_cast<double>(this->get_cell(i, j, false)));
+
1001  printf_barry(" %.2f ", static_cast<double>(this->get_cell(i, j, false)));
1002 
1003  }
1004 
@@ -1113,9 +1113,9 @@
1015  return el;
1016 }
1017 
-
1018 template<typename Cell_Type, typename Data_Type> inline const Cell_Type BArrayDense<Cell_Type, Data_Type>:: rowsum(size_t i) const
+
1018 template<typename Cell_Type, typename Data_Type> inline const Cell_Type BArrayDense<Cell_Type, Data_Type>:: rowsum(size_t i) const
1019 {
-
1020  return el_rowsums[i];
+
1020  return el_rowsums[i];
1021 }
1022 
1023 template<typename Cell_Type, typename Data_Type> inline const Cell_Type BArrayDense<Cell_Type, Data_Type>:: colsum(size_t j) const
@@ -1190,11 +1190,10 @@
Entries
A wrapper class to store source, target, val from a BArray object.
Definition: typedefs.hpp:78
res
return res
Definition: counters-meat.hpp:265
data
Data_Type &&counter_ data(std::move(counter_.data))
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
-
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
-
insert_cell
A insert_cell(i, j, A.default_val(), true, false)
+
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
EXISTS::BOTH
const int BOTH
Definition: typedefs.hpp:38
@@ -1202,7 +1201,7 @@ diff --git a/barraydensecell-bones_8hpp.html b/barraydensecell-bones_8hpp.html index 89e498390..2b0703147 100644 --- a/barraydensecell-bones_8hpp.html +++ b/barraydensecell-bones_8hpp.html @@ -118,7 +118,7 @@ - +

Macros

#define POS(a, b)   (a) + (b) * N
#define POS(a, b)   (a) + (b) * N
 

Macro Definition Documentation

@@ -132,7 +132,7 @@

#define POS (   - a, + a, @@ -143,7 +143,7 @@

a) + (b) * N +    (a) + (b) * N
@@ -158,7 +158,7 @@

  • include
  • barry
  • barraydensecell-bones.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/barraydensecell-bones_8hpp_source.html b/barraydensecell-bones_8hpp_source.html index e8743cf21..0b55a4aa0 100644 --- a/barraydensecell-bones_8hpp_source.html +++ b/barraydensecell-bones_8hpp_source.html @@ -120,7 +120,7 @@
22 private:
23 
24  BArrayDense<Cell_Type,Data_Type> * dat;
-
25  size_t i;
+
25  size_t i;
26  size_t j;
27 
28 public:
@@ -131,13 +131,13 @@
33  size_t j_,
34  bool check_bounds = true
35  ) :
-
36  i(i_), j(j_)
+
36  i(i_), j(j_)
37  {
38 
39  if (check_bounds)
40  {
41 
-
42  if (i >= Array_->nrow())
+
42  if (i >= Array_->nrow())
43  throw std::length_error("Row out of range.");
44  if (j >= Array_->ncol())
45  throw std::length_error("Col out of range.");
@@ -181,15 +181,15 @@
BArrayDense
Baseline class for binary arrays.
Definition: barraydense-bones.hpp:33
BArrayDense::ncol
size_t ncol() const noexcept
Definition: barraydense-meat.hpp:571
BArrayDense::nrow
size_t nrow() const noexcept
Definition: barraydense-meat.hpp:567
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
diff --git a/barraydensecell-meat_8hpp.html b/barraydensecell-meat_8hpp.html index d7f817563..957b0840c 100644 --- a/barraydensecell-meat_8hpp.html +++ b/barraydensecell-meat_8hpp.html @@ -112,7 +112,7 @@ - +

Macros

#define POS(a, b)   (a) + (b) * dat->N
#define POS(a, b)   (a) + (b) * dat->N
 

Macro Definition Documentation

@@ -126,7 +126,7 @@

#define POS (   - a, + a, @@ -137,7 +137,7 @@

a) + (b) * dat->N +    (a) + (b) * dat->N
@@ -152,7 +152,7 @@

  • include
  • barry
  • barraydensecell-meat.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/barraydensecell-meat_8hpp_source.html b/barraydensecell-meat_8hpp_source.html index 577664649..80802f599 100644 --- a/barraydensecell-meat_8hpp_source.html +++ b/barraydensecell-meat_8hpp_source.html @@ -110,14 +110,14 @@
12 
13  Cell_Type val = static_cast<Cell_Type>(other);
14  #ifdef BARRY_DEBUG
-
15  Cell_Type old = dat->el.at(POS(i,j));
-
16  dat->el.at(POS(i,j)) = val;
-
17  dat->el_rowsums.at(i) += (val - old);
+
15  Cell_Type old = dat->el.at(POS(i,j));
+
16  dat->el.at(POS(i,j)) = val;
+
17  dat->el_rowsums.at(i) += (val - old);
18  dat->el_colsums.at(j) += (val - old);
19  #else
-
20  Cell_Type old = dat->el[POS(i,j)];
-
21  dat->el[POS(i,j)] = val;
-
22  dat->el_rowsums[i] += (val - old);
+
20  Cell_Type old = dat->el[POS(i,j)];
+
21  dat->el[POS(i,j)] = val;
+
22  dat->el_rowsums[i] += (val - old);
23  dat->el_colsums[j] += (val - old);
24  #endif
25 
@@ -129,14 +129,14 @@
31 inline void BArrayDenseCell<Cell_Type,Data_Type>::operator=(const Cell_Type & val) {
32 
33  #ifdef BARRY_DEBUG
-
34  Cell_Type old = dat->el.at(POS(i,j));
-
35  dat->el.at(POS(i,j)) = val;
-
36  dat->el_rowsums.at(i) += (val - old);
+
34  Cell_Type old = dat->el.at(POS(i,j));
+
35  dat->el.at(POS(i,j)) = val;
+
36  dat->el_rowsums.at(i) += (val - old);
37  dat->el_colsums.at(j) += (val - old);
38  #else
-
39  Cell_Type old = dat->el[POS(i,j)];
-
40  dat->el[POS(i,j)] = val;
-
41  dat->el_rowsums[i] += (val - old);
+
39  Cell_Type old = dat->el[POS(i,j)];
+
40  dat->el[POS(i,j)] = val;
+
41  dat->el_rowsums[i] += (val - old);
42  dat->el_colsums[j] += (val - old);
43  #endif
44 
@@ -146,12 +146,12 @@
48 inline void BArrayDenseCell<Cell_Type,Data_Type>::operator+=(const Cell_Type & val) {
49 
50  #ifdef BARRY_DEBUG
-
51  dat->el.at(POS(i,j)) += val;
-
52  dat->el_rowsums.at(i) += val;
+
51  dat->el.at(POS(i,j)) += val;
+
52  dat->el_rowsums.at(i) += val;
53  dat->el_colsums.at(j) += val;
54  #else
-
55  dat->el[POS(i,j)] += val;
-
56  dat->el_rowsums[i] += val;
+
55  dat->el[POS(i,j)] += val;
+
56  dat->el_rowsums[i] += val;
57  dat->el_colsums[j] += val;
58  #endif
59 
@@ -161,12 +161,12 @@
63 inline void BArrayDenseCell<Cell_Type,Data_Type>::operator-=(const Cell_Type & val) {
64 
65  #ifdef BARRY_DEBUG
-
66  dat->el.at(POS(i,j)) -= val;
-
67  dat->el_rowsums.at(i) -= val;
+
66  dat->el.at(POS(i,j)) -= val;
+
67  dat->el_rowsums.at(i) -= val;
68  dat->el_colsums.at(j) -= val;
69  #else
-
70  dat->el[POS(i,j)] -= val;
-
71  dat->el_rowsums[i] -= val;
+
70  dat->el[POS(i,j)] -= val;
+
71  dat->el_rowsums[i] -= val;
72  dat->el_colsums[j] -= val;
73  #endif
74 
@@ -176,15 +176,15 @@
78 inline void BArrayDenseCell<Cell_Type,Data_Type>::operator*=(const Cell_Type & val) {
79 
80  #ifdef BARRY_DEBUG
-
81  Cell_Type old = dat->el.at(POS(i,j));
+
81  Cell_Type old = dat->el.at(POS(i,j));
82  dat->el_colsums.at(j) += (old * val - old);
-
83  dat->el_rowsums.at(i) += (old * val - old);
-
84  dat->el.at(POS(i,j)) *= val;
+
83  dat->el_rowsums.at(i) += (old * val - old);
+
84  dat->el.at(POS(i,j)) *= val;
85  #else
-
86  Cell_Type old = dat->el[POS(i,j)];
+
86  Cell_Type old = dat->el[POS(i,j)];
87  dat->el_colsums[j] += (old * val - old);
-
88  dat->el_rowsums[i] += (old * val - old);
-
89  dat->el[POS(i,j)] *= val;
+
88  dat->el_rowsums[i] += (old * val - old);
+
89  dat->el[POS(i,j)] *= val;
90  #endif
91 
92 }
@@ -193,27 +193,27 @@
95 inline void BArrayDenseCell<Cell_Type,Data_Type>::operator/=(const Cell_Type & val) {
96 
97  #ifdef BARRY_DEBUG
-
98  Cell_Type old = dat->el.at(POS(i,j));
-
99  dat->el_rowsums.at(i) += (old/val - old);
+
98  Cell_Type old = dat->el.at(POS(i,j));
+
99  dat->el_rowsums.at(i) += (old/val - old);
100  dat->el_colsums.at(j) += (old/val - old);
-
101  dat->el.at(POS(i,j)) /= val;
+
101  dat->el.at(POS(i,j)) /= val;
102  #else
-
103  Cell_Type old = dat->el[POS(i,j)];
-
104  dat->el_rowsums[i] += (old/val - old);
+
103  Cell_Type old = dat->el[POS(i,j)];
+
104  dat->el_rowsums[i] += (old/val - old);
105  dat->el_colsums[j] += (old/val - old);
-
106  dat->el[POS(i,j)] /= val;
+
106  dat->el[POS(i,j)] /= val;
107  #endif
108 
109 }
110 
111 template<typename Cell_Type,typename Data_Type>
112 inline BArrayDenseCell<Cell_Type,Data_Type>::operator Cell_Type() const {
-
113  return dat->el[POS(i,j)];
+
113  return dat->el[POS(i,j)];
114 }
115 
116 template<typename Cell_Type,typename Data_Type>
117 inline bool BArrayDenseCell<Cell_Type,Data_Type>::operator==(const Cell_Type & val) const {
-
118  return dat->el[POS(i,j)] == val;
+
118  return dat->el[POS(i,j)] == val;
119 }
120 
121 #undef POS
@@ -227,15 +227,15 @@
BArrayDenseCell::operator=
BArrayDenseCell< Cell_Type, Data_Type > & operator=(const BArrayDenseCell< Cell_Type, Data_Type > &other)
Definition: barraydensecell-meat.hpp:9
BArrayDenseCell::operator*=
void operator*=(const Cell_Type &val)
Definition: barraydensecell-meat.hpp:78
BArrayDenseCell::operator-=
void operator-=(const Cell_Type &val)
Definition: barraydensecell-meat.hpp:63
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
diff --git a/barraydensecol-bones_8hpp.html b/barraydensecol-bones_8hpp.html index 778d94ec1..1e3152161 100644 --- a/barraydensecol-bones_8hpp.html +++ b/barraydensecol-bones_8hpp.html @@ -120,9 +120,9 @@ - + - + @@ -138,7 +138,7 @@

#define POS

- + @@ -149,7 +149,7 @@

a) +

Macros

#define POS(a, b)   (b)*N + (a)
#define POS(a, b)   (b)*N + (a)
 
#define POS_N(a, b, c)   (b)*(c) + (a)
#define POS_N(a, b, c)   (b)*(c) + (a)
 
#define ZERO_CELL   static_cast<Cell_Type>(0.0)
 
(  a, a,
   (b)*N + (a)
@@ -168,7 +168,7 @@

#define POS_N (   - a, + a, @@ -185,7 +185,7 @@

a) +    (b)*(c) + (a)

@@ -216,7 +216,7 @@

  • include
  • barry
  • barraydensecol-bones.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/barraydensecol-bones_8hpp_source.html b/barraydensecol-bones_8hpp_source.html index 8d56b098b..de4125f7c 100644 --- a/barraydensecol-bones_8hpp_source.html +++ b/barraydensecol-bones_8hpp_source.html @@ -119,11 +119,11 @@
21  if (!col_filled)
22  {
23 
-
24  for (size_t i = 0u; i < array->N; ++i)
+
24  for (size_t i = 0u; i < array->N; ++i)
25  {
26 
-
27  if (array->el[POS_N(i, index, array->N)] != ZERO_CELL)
-
28  col[i] = col[POS_N(i, index, array->N)];
+
27  if (array->el[POS_N(i, index, array->N)] != ZERO_CELL)
+
28  col[i] = col[POS_N(i, index, array->N)];
29 
30  }
31 
@@ -157,10 +157,10 @@
59  return col.size();
60  };
61 
-
62  std::pair<size_t,Cell_Type*> & operator()(size_t i)
+
62  std::pair<size_t,Cell_Type*> & operator()(size_t i)
63  {
64  fill_if_needed();
-
65  return col[i];
+
65  return col[i];
66  }
67 
68 };
@@ -181,11 +181,11 @@
83  ) : array(&array_), index(j)
84  {
85 
-
86  for (size_t i = 0u; i < array->N; ++i)
+
86  for (size_t i = 0u; i < array->N; ++i)
87  {
88 
-
89  if (array->el[POS_N(i, index, array->N)] != ZERO_CELL)
-
90  col[i] = col[POS_N(i, index, array->N)];
+
89  if (array->el[POS_N(i, index, array->N)] != ZERO_CELL)
+
90  col[i] = col[POS_N(i, index, array->N)];
91 
92  }
93 
@@ -207,9 +207,9 @@
109  return col.size();
110  };
111 
-
112  const std::pair<size_t,Cell_Type*> operator()(size_t i) const
+
112  const std::pair<size_t,Cell_Type*> operator()(size_t i) const
113  {
-
114  return col[i];
+
114  return col[i];
115  }
116 
117 };
@@ -236,8 +236,8 @@
BArrayDenseCol::operator()
std::pair< size_t, Cell_Type * > & operator()(size_t i)
Definition: barraydensecol-bones.hpp:62
BArrayDenseCol::size
size_t size() const noexcept
Definition: barraydensecol-bones.hpp:56
BArrayDense
Baseline class for binary arrays.
Definition: barraydense-bones.hpp:33
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
Col_type
Map< size_t, Cell< Cell_Type > * > Col_type
Definition: typedefs.hpp:70
@@ -246,7 +246,7 @@ diff --git a/barraydenserow-bones_8hpp.html b/barraydenserow-bones_8hpp.html index 36f5aafc0..986794eb2 100644 --- a/barraydenserow-bones_8hpp.html +++ b/barraydenserow-bones_8hpp.html @@ -120,9 +120,9 @@ - + - + @@ -138,7 +138,7 @@

#define POS

- + @@ -149,7 +149,7 @@

a) +

Macros

#define POS(a, b)   (b) * N + (a)
#define POS(a, b)   (b) * N + (a)
 
#define POS_N(a, b, c)   (b)*(c) + (a)
#define POS_N(a, b, c)   (b)*(c) + (a)
 
#define ZERO_CELL   static_cast< Cell_Type >(0.0)
 
(  a, a,
   (b) * N + (a)
@@ -168,7 +168,7 @@

#define POS_N (   - a, + a, @@ -185,7 +185,7 @@

a) +    (b)*(c) + (a)

@@ -216,7 +216,7 @@

  • include
  • barry
  • barraydenserow-bones.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/barraydenserow-bones_8hpp_source.html b/barraydenserow-bones_8hpp_source.html index 89ca3c771..b5b7cd037 100644 --- a/barraydenserow-bones_8hpp_source.html +++ b/barraydenserow-bones_8hpp_source.html @@ -137,8 +137,8 @@
39 
40  BArrayDenseRow(
41  BArrayDense< Cell_Type,Data_Type > & array_,
-
42  size_t i
-
43  ) : array(&array_), index(i) {};
+
42  size_t i
+
43  ) : array(&array_), index(i) {};
44 
45  typename Row_type<Cell_Type>::iterator & begin()
46  {
@@ -164,11 +164,11 @@
66 
67  };
68 
-
69  std::pair<size_t,Cell<Cell_Type>> & operator()(size_t i)
+
69  std::pair<size_t,Cell<Cell_Type>> & operator()(size_t i)
70  {
71 
72  fill_if_needed();
-
73  return row[i];
+
73  return row[i];
74 
75  }
76 
@@ -186,8 +186,8 @@
88 public:
89  BArrayDenseRow_const(
90  const BArrayDense< Cell_Type,Data_Type > & array_,
-
91  size_t i
-
92  ) : array(&array_), index(i)
+
91  size_t i
+
92  ) : array(&array_), index(i)
93  {
94 
95  for (size_t j = 0u; j < array->M; ++j)
@@ -218,9 +218,9 @@
120  return row.size();
121  };
122 
-
123  const std::pair<size_t,Cell<Cell_Type>> operator()(size_t i) const
+
123  const std::pair<size_t,Cell<Cell_Type>> operator()(size_t i) const
124  {
-
125  return row[i];
+
125  return row[i];
126  }
127 
128 };
@@ -247,8 +247,8 @@
BArrayDenseRow::size
size_t size() const noexcept
Definition: barraydenserow-bones.hpp:61
BArrayDenseRow::end
Row_type< Cell_Type >::iterator & end()
Definition: barraydenserow-bones.hpp:53
BArrayDenseRow::operator()
std::pair< size_t, Cell< Cell_Type > > & operator()(size_t i)
Definition: barraydenserow-bones.hpp:69
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
Row_type
Map< size_t, Cell< Cell_Type > > Row_type
Definition: typedefs.hpp:67
@@ -257,7 +257,7 @@ diff --git a/barrayrow-bones_8hpp.html b/barrayrow-bones_8hpp.html index 5efea24cd..bfe2930cf 100644 --- a/barrayrow-bones_8hpp.html +++ b/barrayrow-bones_8hpp.html @@ -114,7 +114,7 @@ diff --git a/barrayrow-bones_8hpp_source.html b/barrayrow-bones_8hpp_source.html index dbbfd272a..cb093d8ba 100644 --- a/barrayrow-bones_8hpp_source.html +++ b/barrayrow-bones_8hpp_source.html @@ -109,12 +109,12 @@
11 public:
12 
13  BArrayRow(BArray<Cell_Type,Data_Type> * Array_, size_t i_,, bool check_bounds = true) :
-
14  Array(Array_), i(i_), j(j_) {
+
14  Array(Array_), i(i_), j(j_) {
15 
16  if (check_bounds)
17  {
18 
-
19  if (i >= Array->nrow())
+
19  if (i >= Array->nrow())
20  throw std::length_error("Row out of range.");
21 
22  }
@@ -145,10 +145,10 @@
47 public:
48 
49  BArrayRow_const(const BArray<Cell_Type,Data_Type> * Array_, size_t i_, bool check_bounds = true) :
-
50  Array(Array_), i(i_), {
+
50  Array(Array_), i(i_), {
51  if (check_bounds) {
52 
-
53  if (i >= Array->nrow())
+
53  if (i >= Array->nrow())
54  throw std::length_error("Row out of range.");
55 
56  }
@@ -187,15 +187,15 @@
BArrayRow::operator-=
void operator-=(const BArrayRow< Cell_Type, Data_Type > &val)
BArrayRow::operator/=
void operator/=(const BArrayRow< Cell_Type, Data_Type > &val)
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
diff --git a/barrayrow-meat_8hpp.html b/barrayrow-meat_8hpp.html index 4d6bb567a..bbc376187 100644 --- a/barrayrow-meat_8hpp.html +++ b/barrayrow-meat_8hpp.html @@ -108,7 +108,7 @@   #define BROW_TEMPLATE_ARGS()   <typename Cell_Type, typename Data_Type>   -#define BROW_TEMPLATE(a, b)    template BROW_TEMPLATE_ARGS() inline a BROW_TYPE()::b +#define BROW_TEMPLATE(a, b)    template BROW_TEMPLATE_ARGS() inline a BROW_TYPE()::b   - + @@ -146,7 +146,7 @@

BROW_TEMPLATE_ARGS() inline a BROW_TYPE()::b +

@@ -135,7 +135,7 @@

#define BROW_TEMPLATE

 (  a, a,
    template BROW_TEMPLATE_ARGS() inline a BROW_TYPE()::b
@@ -350,7 +350,7 @@

  • include
  • barry
  • barrayrow-meat.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/barrayrow-meat_8hpp_source.html b/barrayrow-meat_8hpp_source.html index ff2377e10..c83dbabda 100644 --- a/barrayrow-meat_8hpp_source.html +++ b/barrayrow-meat_8hpp_source.html @@ -113,7 +113,7 @@
15 
16  // Then, iterate throught the values of val and add it
17  for (auto & v: val)
-
18  Array->inser_cell(i, v.first, v.second);
+
18  Array->inser_cell(i, v.first, v.second);
19 
20  // Return
21  return;
@@ -123,7 +123,7 @@
25 BROW_TEMPLATE(void, operator+=) (const BROW_TYPE() & val) {
26 
27  for (auto & v : val)
-
28  this->Array->operator(i, v.first) += v.second;
+
28  this->Array->operator(i, v.first) += v.second;
29 
30  return;
31 
@@ -134,7 +134,7 @@
36 ) {
37 
38  for (auto & v : val)
-
39  this->Array->operator(i, v.first) -= v.second;
+
39  this->Array->operator(i, v.first) -= v.second;
40 
41  return;
42 
@@ -144,8 +144,8 @@
46  const BROW_TYPE() & val
47 ) {
48 
-
49  if (!Array->is_empty(i, j, false)) {
-
50  Array->el_ij.at(i).at(j).value *= val;
+
49  if (!Array->is_empty(i, j, false)) {
+
50  Array->el_ij.at(i).at(j).value *= val;
51  }
52 
53 }
@@ -154,30 +154,30 @@
56  const BROW_TYPE() & val
57 ) {
58 
-
59  if (!Array->is_empty(i, j, false)) {
-
60  Array->el_ij.at(i).at(j).value /= val;
+
59  if (!Array->is_empty(i, j, false)) {
+
60  Array->el_ij.at(i).at(j).value /= val;
61  }
62 
63 }
64 
65 template<typename Cell_Type,typename Data_Type>
66 inline BArrayCell<Cell_Type,Data_Type>::operator Cell_Type() const {
-
67  return Array->get_cell(i, j, false);
+
67  return Array->get_cell(i, j, false);
68 }
69 
70 template<typename Cell_Type,typename Data_Type>
71 inline bool BArrayCell<Cell_Type,Data_Type>::operator==(const Cell_Type & val) const {
-
72  return Array->get_cell(i, j, false) == static_cast<Cell_Type>(val);
+
72  return Array->get_cell(i, j, false) == static_cast<Cell_Type>(val);
73 }
74 
75 template<typename Cell_Type,typename Data_Type>
76 inline BArrayCell_const<Cell_Type,Data_Type>::operator Cell_Type() const {
-
77  return Array->get_cell(i, j, false);
+
77  return Array->get_cell(i, j, false);
78 }
79 
80 template<typename Cell_Type,typename Data_Type>
81 inline bool BArrayCell_const<Cell_Type,Data_Type>::operator==(const Cell_Type & val) const {
-
82  return Array->get_cell(i, j, false) == static_cast<Cell_Type>(val);
+
82  return Array->get_cell(i, j, false) == static_cast<Cell_Type>(val);
83 }
84 
85 template<typename Cell_Type,typename Data_Type>
@@ -187,22 +187,22 @@
89 
90 template<typename Cell_Type,typename Data_Type>
91 inline bool BArrayCell_const<Cell_Type,Data_Type>::operator<(const Cell_Type & val) const {
-
92  return Array->get_cell(i, j, false) < static_cast<Cell_Type>(val);
+
92  return Array->get_cell(i, j, false) < static_cast<Cell_Type>(val);
93 }
94 
95 template<typename Cell_Type,typename Data_Type>
96 inline bool BArrayCell_const<Cell_Type,Data_Type>::operator>(const Cell_Type & val) const {
-
97  return Array->get_cell(i, j, false) > static_cast<Cell_Type>(val);
+
97  return Array->get_cell(i, j, false) > static_cast<Cell_Type>(val);
98 }
99 
100 template<typename Cell_Type,typename Data_Type>
101 inline bool BArrayCell_const<Cell_Type,Data_Type>::operator<=(const Cell_Type & val) const {
-
102  return Array->get_cell(i, j, false) <= static_cast<Cell_Type>(val);
+
102  return Array->get_cell(i, j, false) <= static_cast<Cell_Type>(val);
103 }
104 
105 template<typename Cell_Type,typename Data_Type>
106 inline bool BArrayCell_const<Cell_Type,Data_Type>::operator>=(const Cell_Type & val) const {
-
107  return Array->get_cell(i, j, false) >= static_cast<Cell_Type>(val);
+
107  return Array->get_cell(i, j, false) >= static_cast<Cell_Type>(val);
108 }
109 
110 #undef BROW_TYPE
@@ -221,15 +221,15 @@
BArrayCell_const::operator>=
bool operator>=(const Cell_Type &val) const
Definition: barraycell-meat.hpp:98
BArrayCell::operator==
bool operator==(const Cell_Type &val) const
Definition: barraycell-meat.hpp:63
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
diff --git a/barrayvector-bones_8hpp.html b/barrayvector-bones_8hpp.html index 7d5f1c639..6303dbee0 100644 --- a/barrayvector-bones_8hpp.html +++ b/barrayvector-bones_8hpp.html @@ -115,7 +115,7 @@ diff --git a/barrayvector-bones_8hpp_source.html b/barrayvector-bones_8hpp_source.html index 0ca4515a7..eb54883c0 100644 --- a/barrayvector-bones_8hpp_source.html +++ b/barrayvector-bones_8hpp_source.html @@ -119,14 +119,14 @@
35  size_t & i_,
36  bool check_bounds = true
37  ) :
-
38  Array(Array_), vec(0u), dim(dim_), i(i_) {
+
38  Array(Array_), vec(0u), dim(dim_), i(i_) {
39 
40  if (dim > 1u)
41  throw std::range_error("-dim_- should be either 0 (row) or 1 (col).");
42 
43  if (check_bounds) {
44 
-
45  if ((dim == 0u) && (i >= Array->nrow()))
+
45  if ((dim == 0u) && (i >= Array->nrow()))
46  throw std::length_error("Row out of range.");
47  if ((dim == 1u) && (j >= Array->ncol()))
48  throw std::length_error("Col out of range.");
@@ -160,7 +160,7 @@
76  const BArray<Cell_Type,Data_Type> * Array;
77  std::vector< std::pair< size_t, Cell_Type > > vec;
78  size_t dim;
-
79  size_t i;
+
79  size_t i;
80 
81  void init_vec();
82  bool vec_initialized = false;
@@ -173,14 +173,14 @@
89  size_t & i_,
90  bool check_bounds = true
91  ) :
-
92  Array(Array_), vec(0u), dim(dim_), i(i_) {
+
92  Array(Array_), vec(0u), dim(dim_), i(i_) {
93 
94  if (dim > 1u)
95  throw std::range_error("-dim_- should be either 0 (row) or 1 (col).");
96 
97  if (check_bounds) {
98 
-
99  if ((dim == 0u) && (i >= Array->nrow()))
+
99  if ((dim == 0u) && (i >= Array->nrow()))
100  throw std::length_error("Row out of range.");
101  if ((dim == 1u) && (j >= Array->ncol()))
102  throw std::length_error("Col out of range.");
@@ -223,8 +223,8 @@
BArrayVector::begin
std::vector< Cell_Type >::const_iterator begin() noexcept
Definition: barrayvector-meat.hpp:50
BArrayVector::is_col
bool is_col() const noexcept
Definition: barrayvector-meat.hpp:34
BArrayVector::end
std::vector< Cell_Type >::const_iterator end() noexcept
Definition: barrayvector-meat.hpp:64
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
@@ -232,7 +232,7 @@ diff --git a/barrayvector-meat_8hpp.html b/barrayvector-meat_8hpp.html index 3b47365d2..f73638f7b 100644 --- a/barrayvector-meat_8hpp.html +++ b/barrayvector-meat_8hpp.html @@ -104,7 +104,7 @@ diff --git a/barrayvector-meat_8hpp_source.html b/barrayvector-meat_8hpp_source.html index 0ab21eb8c..95c507ec9 100644 --- a/barrayvector-meat_8hpp_source.html +++ b/barrayvector-meat_8hpp_source.html @@ -108,13 +108,13 @@
10  if (dim == 0u)
11  {
12 
-
13  for (const auto& a : Array->el_ij[i])
-
14  vec.push_back(a);
+
13  for (const auto& a : Array->el_ij[i])
+
14  vec.push_back(a);
15 
16  } else {
17 
-
18  for (const auto& a : Array->el_ji[i])
-
19  vec.emplace_back(std::make_pair<size_t, Cell<Cell_Type>>(a.first, *(a.second)));
+
18  for (const auto& a : Array->el_ji[i])
+
19  vec.emplace_back(std::make_pair<size_t, Cell<Cell_Type>>(a.first, *(a.second)));
20 
21  }
22 
@@ -137,9 +137,9 @@
39 inline size_t BArrayVector<Cell_Type,Data_Type>::size() const noexcept {
40 
41  if (dim == 0u)
-
42  return Array->el_ij[i].size();
+
42  return Array->el_ij[i].size();
43  else
-
44  return Array->el_ji[i].size();
+
44  return Array->el_ji[i].size();
45 
46 
47 }
@@ -166,19 +166,19 @@
68 template<typename Cell_Type,typename Data_Type>
69 inline void BArrayVector<Cell_Type,Data_Type>::operator=(const Cell_Type & val) {
70 
-
71  size_t k = 0u;
+
71  size_t k = 0u;
72  size_t N_ = (dim == 0u) ? Array->nrow() : Array->ncol();
73 
74  if (dim == 0u)
75  {
76 
77  for (auto j = 0u; j < N_; ++j)
-
78  Array(i, j) = val;
+
78  Array(i, j) = val;
79 
80  } else {
81 
82  for (auto j = 0u; j < N_; ++j)
-
83  Array(j, i) = val;
+
83  Array(j, i) = val;
84 
85  }
86 
@@ -188,19 +188,19 @@
90 template<typename Cell_Type,typename Data_Type>
91 inline void BArrayVector<Cell_Type,Data_Type>::operator+=(const Cell_Type & val) {
92 
-
93  size_t k = 0u;
+
93  size_t k = 0u;
94  size_t N_ = (dim == 0u) ? Array->nrow() : Array->ncol();
95 
96  if (dim == 0u)
97  {
98 
99  for (auto j = 0u; j < N_; ++j)
-
100  Array(i, j) += val;
+
100  Array(i, j) += val;
101 
102  } else {
103 
104  for (auto j = 0u; j < N_; ++j)
-
105  Array(j, i) += val;
+
105  Array(j, i) += val;
106 
107  }
108 
@@ -209,19 +209,19 @@
111 template<typename Cell_Type,typename Data_Type>
112 inline void BArrayVector<Cell_Type,Data_Type>::operator-=(const Cell_Type & val) {
113 
-
114  size_t k = 0u;
+
114  size_t k = 0u;
115  size_t N_ = (dim == 0u) ? Array->nrow() : Array->ncol();
116 
117  if (dim == 0u)
118  {
119 
120  for (auto j = 0u; j < N_; ++j)
-
121  Array(i, j) -= val;
+
121  Array(i, j) -= val;
122 
123  } else {
124 
125  for (auto j = 0u; j < N_; ++j)
-
126  Array(j, i) -= val;
+
126  Array(j, i) -= val;
127 
128  }
129 
@@ -230,19 +230,19 @@
132 template<typename Cell_Type,typename Data_Type>
133 inline void BArrayVector<Cell_Type,Data_Type>::operator*=(const Cell_Type & val) {
134 
-
135  size_t k = 0u;
+
135  size_t k = 0u;
136  size_t N_ = (dim == 0u) ? Array->nrow() : Array->ncol();
137 
138  if (dim == 0u)
139  {
140 
141  for (auto j = 0u; j < N_; ++j)
-
142  Array(i, j) *= val;
+
142  Array(i, j) *= val;
143 
144  } else {
145 
146  for (auto j = 0u; j < N_; ++j)
-
147  Array(j, i) *= val;
+
147  Array(j, i) *= val;
148 
149  }
150 
@@ -251,19 +251,19 @@
153 template<typename Cell_Type,typename Data_Type>
154 inline void BArrayVector<Cell_Type,Data_Type>::operator/=(const Cell_Type & val) {
155 
-
156  size_t k = 0u;
+
156  size_t k = 0u;
157  size_t N_ = (dim == 0u) ? Array->nrow() : Array->ncol();
158 
159  if (dim == 0u)
160  {
161 
162  for (auto j = 0u; j < N_; ++j)
-
163  Array(i, j) /= val;
+
163  Array(i, j) /= val;
164 
165  } else {
166 
167  for (auto j = 0u; j < N_; ++j)
-
168  Array(j, i) /= val;
+
168  Array(j, i) /= val;
169 
170  }
171 
@@ -273,9 +273,9 @@
175 inline BArrayVector<Cell_Type,Data_Type>::operator std::vector< Cell_Type >() const {
176 
177  if (dim == 0u)
-
178  return Array->get_row_vec(i, false);
+
178  return Array->get_row_vec(i, false);
179  else
-
180  return Array->get_col_vec(i, false);
+
180  return Array->get_col_vec(i, false);
181 
182 }
183 
@@ -286,7 +286,7 @@
188  {
189  for (size_t j = 0u; j < Array->ncol(); ++j)
190  {
-
191  if (Array(i, j) != val)
+
191  if (Array(i, j) != val)
192  return false;
193 
194  }
@@ -295,7 +295,7 @@
197 
198  for (size_t j = 0u; j < Array->nrow(); ++j)
199  {
-
200  if (Array(j, i) != val)
+
200  if (Array(j, i) != val)
201  return false;
202 
203  }
@@ -310,9 +310,9 @@
212 inline BArrayVector_const<Cell_Type,Data_Type>::operator std::vector< Cell_Type >() const {
213 
214  if (dim == 0u)
-
215  return Array->get_row_vec(i, false);
+
215  return Array->get_row_vec(i, false);
216  else
-
217  return Array->get_col_vec(i, false);
+
217  return Array->get_col_vec(i, false);
218 
219 }
220 
@@ -323,7 +323,7 @@
225  {
226  for (size_t j = 0u; j < Array->ncol(); ++j)
227  {
-
228  if (Array(i, j) != val)
+
228  if (Array(i, j) != val)
229  return false;
230 
231  }
@@ -332,7 +332,7 @@
234 
235  for (size_t j = 0u; j < Array->nrow(); ++j)
236  {
-
237  if (Array(j, i) != val)
+
237  if (Array(j, i) != val)
238  return false;
239 
240  }
@@ -355,7 +355,7 @@
257  {
258  for (size_t j = 0u; j < Array->ncol(); ++j)
259  {
-
260  if (Array(i, j) >= val)
+
260  if (Array(i, j) >= val)
261  return false;
262 
263  }
@@ -364,7 +364,7 @@
266 
267  for (size_t j = 0u; j < Array->nrow(); ++j)
268  {
-
269  if (Array(j, i) >= val)
+
269  if (Array(j, i) >= val)
270  return false;
271 
272  }
@@ -382,7 +382,7 @@
284  {
285  for (size_t j = 0u; j < Array->ncol(); ++j)
286  {
-
287  if (Array(i, j) > val)
+
287  if (Array(i, j) > val)
288  return false;
289 
290  }
@@ -391,7 +391,7 @@
293 
294  for (size_t j = 0u; j < Array->nrow(); ++j)
295  {
-
296  if (Array(j, i) > val)
+
296  if (Array(j, i) > val)
297  return false;
298 
299  }
@@ -435,18 +435,16 @@
BArrayVector::end
std::vector< Cell_Type >::const_iterator end() noexcept
Definition: barrayvector-meat.hpp:64
BArrayVector::operator-=
void operator-=(const Cell_Type &val)
Definition: barrayvector-meat.hpp:112
Cell
Entries in BArray. For now, it only has two members:
Definition: cell-bones.hpp:10
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
-
a
size_t a
Definition: model-meat.hpp:1287
-
k
size_t k
Definition: model-meat.hpp:1294
diff --git a/barry-configuration_8hpp.html b/barry-configuration_8hpp.html index 0fdb952d2..c0468efab 100644 --- a/barry-configuration_8hpp.html +++ b/barry-configuration_8hpp.html @@ -121,7 +121,7 @@ #define BARRY_SAFE_EXP   -100.0   -#define BARRY_ISFINITE(a) +#define BARRY_ISFINITE(a)   #define BARRY_CHECK_SUPPORT(x, maxs)   @@ -174,7 +174,7 @@

#define BARRY_ISFINITE (   - a) + a) @@ -257,7 +257,7 @@

  • include
  • barry
  • barry-configuration.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barry-configuration_8hpp_source.html b/barry-configuration_8hpp_source.html index 0bfa5a01c..8d9bc816c 100644 --- a/barry-configuration_8hpp_source.html +++ b/barry-configuration_8hpp_source.html @@ -135,7 +135,7 @@
55  #define BARRY_MAX_NUM_ELEMENTS static_cast< size_t >(std::numeric_limits< size_t >::max() /2u)
56 #endif
57 
-
58 #ifdef BARRY_USE_OMP
+
58 #if defined(__OPENMP) || defined(_OPENMP)
59  #define BARRY_WITH_OMP
60  #include <omp.h>
61 #endif
@@ -160,7 +160,7 @@ diff --git a/barry-debug_8hpp.html b/barry-debug_8hpp.html index 5c49000b6..0d93ca9e9 100644 --- a/barry-debug_8hpp.html +++ b/barry-debug_8hpp.html @@ -139,7 +139,7 @@

  • include
  • barry
  • barry-debug.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barry-debug_8hpp_source.html b/barry-debug_8hpp_source.html index dfd2db50a..777e9f760 100644 --- a/barry-debug_8hpp_source.html +++ b/barry-debug_8hpp_source.html @@ -109,9 +109,9 @@
11 
12  // Generic printer (default)
13  template <typename T>
-
14  void BARRY_DEBUG_VEC_PRINT(const std::vector<T> & a) {
+
14  void BARRY_DEBUG_VEC_PRINT(const std::vector<T> & a) {
15  printf_barry("%s [", BARRY_DEBUG_HEADER);
-
16  for(const auto & iter : (a))
+
16  for(const auto & iter : (a))
17  printf_barry("%.4f ", static_cast<double>(iter));
18  printf_barry("]\n");
19  return;
@@ -119,18 +119,18 @@
21 
22  // Specialization for the printer
23  template<>
-
24  inline void BARRY_DEBUG_VEC_PRINT(const std::vector< int > & a) {
+
24  inline void BARRY_DEBUG_VEC_PRINT(const std::vector< int > & a) {
25  printf_barry("%s [", BARRY_DEBUG_HEADER);
-
26  for(const auto & iter : (a))
+
26  for(const auto & iter : (a))
27  printf_barry("%i ", iter);
28  printf_barry("]\n");
29  return;
30  }
31 
32  template<>
-
33  inline void BARRY_DEBUG_VEC_PRINT(const std::vector< std::string > & a) {
+
33  inline void BARRY_DEBUG_VEC_PRINT(const std::vector< std::string > & a) {
34  printf_barry("%s \n", BARRY_DEBUG_HEADER);
-
35  for(const auto & iter : (a))
+
35  for(const auto & iter : (a))
36  printf_barry("%s %s\n", BARRY_DEBUG_HEADER, iter.c_str());
37  printf_barry("%s \n", BARRY_DEBUG_HEADER);
38  return;
@@ -139,14 +139,13 @@
41 
42 #endif
printf_barry
#define printf_barry
Definition: barry-configuration.hpp:51
-
a
size_t a
Definition: model-meat.hpp:1287
diff --git a/barry-macros_8hpp.html b/barry-macros_8hpp.html index 9be7367c0..85b22c54c 100644 --- a/barry-macros_8hpp.html +++ b/barry-macros_8hpp.html @@ -122,8 +122,30 @@   #define BARRY_UNUSED(expr)   do { (void)(expr); } while (0);   +#define BARRY_NCORES_ARG(default)   size_t + 

Macro Definition Documentation

+ +

◆ BARRY_NCORES_ARG

+ +
+
+ + + + + + + + +
#define BARRY_NCORES_ARG( default)   size_t
+
+ +

Definition at line 15 of file barry-macros.hpp.

+ +
+

◆ BARRY_ONE

@@ -214,7 +236,7 @@

  • include
  • barry
  • barry-macros.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barry-macros_8hpp.js b/barry-macros_8hpp.js index 244c50c22..7a88f5f84 100644 --- a/barry-macros_8hpp.js +++ b/barry-macros_8hpp.js @@ -1,5 +1,6 @@ var barry_macros_8hpp = [ + [ "BARRY_NCORES_ARG", "barry-macros_8hpp.html#a1ca54136450bf509406c9def89692fc6", null ], [ "BARRY_ONE", "barry-macros_8hpp.html#ad63ca4d357e75f0c4cd3a7eda3e079b5", null ], [ "BARRY_ONE_DENSE", "barry-macros_8hpp.html#af3dfeaadbd4886431a66b1bd69a687fc", null ], [ "BARRY_UNUSED", "barry-macros_8hpp.html#abdbb6194e397040509635a85186d0d23", null ], diff --git a/barry-macros_8hpp_source.html b/barry-macros_8hpp_source.html index 2a0c4f126..f8852c68d 100644 --- a/barry-macros_8hpp_source.html +++ b/barry-macros_8hpp_source.html @@ -107,14 +107,21 @@
9 
10 #define BARRY_UNUSED(expr) do { (void)(expr); } while (0);
11 
-
12 #endif
+
12 #if defined(_OPENMP) || defined(__OPENMP)
+
13 #define BARRY_NCORES_ARG(default) size_t ncores default
+
14 #else
+
15 #define BARRY_NCORES_ARG(default) size_t
+
16 #endif
+
17 
+
18 
+
19 #endif
diff --git a/barry_8hpp.html b/barry_8hpp.html index 6b2477698..29539c4a4 100644 --- a/barry_8hpp.html +++ b/barry_8hpp.html @@ -228,13 +228,13 @@   #define BARRY_VERSION   BARRY_VERSION_MAYOR ## . ## BARRY_VERSION_MINOR   -#define COUNTER_FUNCTION(a) +#define COUNTER_FUNCTION(a)   -#define COUNTER_LAMBDA(a) +#define COUNTER_LAMBDA(a)   -#define RULE_FUNCTION(a) +#define RULE_FUNCTION(a)   -#define RULE_LAMBDA(a) +#define RULE_LAMBDA(a)  

Macro Definition Documentation

@@ -250,7 +250,7 @@

-

Definition at line 25 of file barry.hpp.

+

Definition at line 29 of file barry.hpp.

@@ -266,7 +266,7 @@

-

Definition at line 29 of file barry.hpp.

+

Definition at line 33 of file barry.hpp.

@@ -282,7 +282,7 @@

-

Definition at line 27 of file barry.hpp.

+

Definition at line 31 of file barry.hpp.

@@ -298,7 +298,7 @@

-

Definition at line 28 of file barry.hpp.

+

Definition at line 32 of file barry.hpp.

@@ -312,19 +312,18 @@

#define COUNTER_FUNCTION (   - a) + a)
Value:
template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
-
inline double (a) (const Array_Type & Array, size_t i, size_t j, Data_Type & data)\
+
inline double (a) (const Array_Type & Array, size_t i, size_t j, Data_Type & data)\
data
Data_Type &&counter_ data(std::move(counter_.data))
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
-
a
size_t a
Definition: model-meat.hpp:1287
+
i
size_t i
Definition: counters-meat.hpp:83
-

Definition at line 88 of file barry.hpp.

+

Definition at line 92 of file barry.hpp.

@@ -338,16 +337,16 @@

#define COUNTER_LAMBDA (   - a) + a)
Value:
template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
-
Counter_fun_type<Array_Type, Data_Type> a = \
-
[](const Array_Type & Array, size_t i, size_t j, Data_Type & data)
+
Counter_fun_type<Array_Type, Data_Type> a = \
+
[](const Array_Type & Array, size_t i, size_t j, Data_Type & data)
-

Definition at line 91 of file barry.hpp.

+

Definition at line 95 of file barry.hpp.

@@ -361,15 +360,15 @@

#define RULE_FUNCTION (   - a) + a)
Value:
template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
-
inline bool (a) (const Array_Type & Array, size_t i, size_t j, Data_Type & data)\
+
inline bool (a) (const Array_Type & Array, size_t i, size_t j, Data_Type & data)\
-

Definition at line 95 of file barry.hpp.

+

Definition at line 99 of file barry.hpp.

@@ -383,16 +382,16 @@

#define RULE_LAMBDA (   - a) + a)
Value:
template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
-
Rule_fun_type<Array_Type, Data_Type> a = \
-
[](const Array_Type & Array, size_t i, size_t j, Data_Type & data)
+
Rule_fun_type<Array_Type, Data_Type> a = \
+
[](const Array_Type & Array, size_t i, size_t j, Data_Type & data)
-

Definition at line 98 of file barry.hpp.

+

Definition at line 102 of file barry.hpp.

@@ -402,7 +401,7 @@

  • include
  • barry
  • barry.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/barry_8hpp_source.html b/barry_8hpp_source.html index 06db43405..b56a2d77c 100644 --- a/barry_8hpp_source.html +++ b/barry_8hpp_source.html @@ -115,85 +115,89 @@
17 #include <regex>
18 #include <iterator>
19 
-
20 #ifdef BARRY_USE_OMP
+
20 #if defined(__OPENMP) || defined(_OPENMP)
21 #include <omp.h>
-
22 #endif
-
23 
-
24 #ifndef BARRY_HPP
-
25 #define BARRY_HPP
-
26 
-
27 #define BARRY_VERSION_MAYOR 0
-
28 #define BARRY_VERSION_MINOR 1
-
29 #define BARRY_VERSION BARRY_VERSION_MAYOR ## . ## BARRY_VERSION_MINOR
+
22 
+
23 // Set the number of threads to match the number of cores
+
24 // in the machine
+
25 
+
26 #endif
+
27 
+
28 #ifndef BARRY_HPP
+
29 #define BARRY_HPP
30 
-
34 namespace barry {
-
35 
-
37  #include "typedefs.hpp"
-
38  #include "barry-macros.hpp"
-
39  #include "freqtable.hpp"
-
40 
-
41  #include "cell-bones.hpp"
-
42  #include "cell-meat.hpp"
-
43 
-
44  #include "barray-bones.hpp"
-
45  #include "barraycell-bones.hpp"
-
46  #include "barray-meat.hpp"
-
47  #include "barraycell-meat.hpp"
-
48  #include "barray-meat-operators.hpp"
-
49 
-
50  #include "barraydense-bones.hpp"
-
51  #include "barraydensecell-bones.hpp"
-
52 
-
53  #include "barraydenserow-bones.hpp"
-
54  #include "barraydensecol-bones.hpp"
-
55 
-
56  #include "barraydense-meat.hpp"
-
57  #include "barraydensecell-meat.hpp"
-
58  #include "barraydense-meat-operators.hpp"
-
59 
-
60  #include "counters-bones.hpp"
-
61  #include "counters-meat.hpp"
-
62 
-
63  #include "statscounter-bones.hpp"
-
64  #include "statscounter-meat.hpp"
-
65 
-
66  #include "support-bones.hpp"
-
67  #include "support-meat.hpp"
-
68 
-
69  #include "powerset-bones.hpp"
-
70  #include "powerset-meat.hpp"
-
71 
-
72  #include "model-bones.hpp"
-
73  #include "model-meat.hpp"
-
74 
-
75  #include "rules-bones.hpp"
-
76  #include "rules-meat.hpp"
-
77 
-
78  namespace counters {
-
79  namespace network {
-
80  #include "counters/network.hpp"
-
81  }
-
82  }
-
83 
-
84 }
-
85 
-
86 namespace netcounters = barry::counters::network;
-
87 
-
88 #define COUNTER_FUNCTION(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
-
89  inline double (a) (const Array_Type & Array, size_t i, size_t j, Data_Type & data)\
-
90 
-
91 #define COUNTER_LAMBDA(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
-
92  Counter_fun_type<Array_Type, Data_Type> a = \
-
93  [](const Array_Type & Array, size_t i, size_t j, Data_Type & data)
-
94 
-
95 #define RULE_FUNCTION(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
-
96  inline bool (a) (const Array_Type & Array, size_t i, size_t j, Data_Type & data)\
-
97 
-
98 #define RULE_LAMBDA(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
-
99  Rule_fun_type<Array_Type, Data_Type> a = \
-
100  [](const Array_Type & Array, size_t i, size_t j, Data_Type & data)
-
101 
-
102 #endif
+
31 #define BARRY_VERSION_MAYOR 0
+
32 #define BARRY_VERSION_MINOR 1
+
33 #define BARRY_VERSION BARRY_VERSION_MAYOR ## . ## BARRY_VERSION_MINOR
+
34 
+
38 namespace barry {
+
39 
+
41  #include "typedefs.hpp"
+
42  #include "barry-macros.hpp"
+
43  #include "freqtable.hpp"
+
44 
+
45  #include "cell-bones.hpp"
+
46  #include "cell-meat.hpp"
+
47 
+
48  #include "barray-bones.hpp"
+
49  #include "barraycell-bones.hpp"
+
50  #include "barray-meat.hpp"
+
51  #include "barraycell-meat.hpp"
+
52  #include "barray-meat-operators.hpp"
+
53 
+
54  #include "barraydense-bones.hpp"
+
55  #include "barraydensecell-bones.hpp"
+
56 
+
57  #include "barraydenserow-bones.hpp"
+
58  #include "barraydensecol-bones.hpp"
+
59 
+
60  #include "barraydense-meat.hpp"
+
61  #include "barraydensecell-meat.hpp"
+
62  #include "barraydense-meat-operators.hpp"
+
63 
+
64  #include "counters-bones.hpp"
+
65  #include "counters-meat.hpp"
+
66 
+
67  #include "statscounter-bones.hpp"
+
68  #include "statscounter-meat.hpp"
+
69 
+
70  #include "support-bones.hpp"
+
71  #include "support-meat.hpp"
+
72 
+
73  #include "powerset-bones.hpp"
+
74  #include "powerset-meat.hpp"
+
75 
+
76  #include "model-bones.hpp"
+
77  #include "model-meat.hpp"
+
78 
+
79  #include "rules-bones.hpp"
+
80  #include "rules-meat.hpp"
+
81 
+
82  namespace counters {
+
83  namespace network {
+
84  #include "counters/network.hpp"
+
85  }
+
86  }
+
87 
+
88 }
+
89 
+
90 namespace netcounters = barry::counters::network;
+
91 
+
92 #define COUNTER_FUNCTION(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
+
93  inline double (a) (const Array_Type & Array, size_t i, size_t j, Data_Type & data)\
+
94 
+
95 #define COUNTER_LAMBDA(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
+
96  Counter_fun_type<Array_Type, Data_Type> a = \
+
97  [](const Array_Type & Array, size_t i, size_t j, Data_Type & data)
+
98 
+
99 #define RULE_FUNCTION(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
+
100  inline bool (a) (const Array_Type & Array, size_t i, size_t j, Data_Type & data)\
+
101 
+
102 #define RULE_LAMBDA(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
+
103  Rule_fun_type<Array_Type, Data_Type> a = \
+
104  [](const Array_Type & Array, size_t i, size_t j, Data_Type & data)
+
105 
+
106 #endif
@@ -214,8 +218,8 @@ - -
barry
barry: Your go-to motif accountant
Definition: barry.hpp:34
+ +
barry
barry: Your go-to motif accountant
Definition: barry.hpp:38
@@ -233,7 +237,7 @@ diff --git a/cell-bones_8hpp.html b/cell-bones_8hpp.html index caa46446e..cc9a69154 100644 --- a/cell-bones_8hpp.html +++ b/cell-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/cell-bones_8hpp_source.html b/cell-bones_8hpp_source.html index 8f5193f1a..846236bf7 100644 --- a/cell-bones_8hpp_source.html +++ b/cell-bones_8hpp_source.html @@ -159,7 +159,7 @@ diff --git a/cell-meat_8hpp.html b/cell-meat_8hpp.html index e94fc4701..db570ab8e 100644 --- a/cell-meat_8hpp.html +++ b/cell-meat_8hpp.html @@ -113,7 +113,7 @@ diff --git a/cell-meat_8hpp_source.html b/cell-meat_8hpp_source.html index 1b62f28a8..d337dad1e 100644 --- a/cell-meat_8hpp_source.html +++ b/cell-meat_8hpp_source.html @@ -180,7 +180,7 @@ diff --git a/class_b_array-members.html b/class_b_array-members.html index 7b19f59de..2429067c0 100644 --- a/class_b_array-members.html +++ b/class_b_array-members.html @@ -165,7 +165,7 @@ diff --git a/class_b_array.html b/class_b_array.html index 2473a6ffd..740d5fca5 100644 --- a/class_b_array.html +++ b/class_b_array.html @@ -113,21 +113,21 @@    ~BArray ()   -void out_of_range (size_t i, size_t j) const +void out_of_range (size_t i, size_t j) const   -Cell_Type get_cell (size_t i, size_t j, bool check_bounds=true) const +Cell_Type get_cell (size_t i, size_t j, bool check_bounds=true) const   -std::vector< Cell_Type > get_col_vec (size_t i, bool check_bounds=true) const +std::vector< Cell_Type > get_col_vec (size_t i, bool check_bounds=true) const   -std::vector< Cell_Type > get_row_vec (size_t i, bool check_bounds=true) const +std::vector< Cell_Type > get_row_vec (size_t i, bool check_bounds=true) const   -void get_col_vec (std::vector< Cell_Type > *x, size_t i, bool check_bounds=true) const +void get_col_vec (std::vector< Cell_Type > *x, size_t i, bool check_bounds=true) const   -void get_row_vec (std::vector< Cell_Type > *x, size_t i, bool check_bounds=true) const +void get_row_vec (std::vector< Cell_Type > *x, size_t i, bool check_bounds=true) const   -const Row_type< Cell_Type > & row (size_t i, bool check_bounds=true) const +const Row_type< Cell_Type > & row (size_t i, bool check_bounds=true) const   -const Col_type< Cell_Type > & col (size_t i, bool check_bounds=true) const +const Col_type< Cell_Type > & col (size_t i, bool check_bounds=true) const   Entries< Cell_Type > get_entries () const  Get the edgelist. More...
@@ -183,7 +183,7 @@  Move assignment. More...
 
-void set_data (Data_Type *data_, bool delete_data_=false) +void set_data (Data_Type *data_, bool delete_data_=false)  Set the data object. More...
  Data_Type * D_ptr () @@ -205,7 +205,7 @@ -bool is_empty (size_t i, size_t j, bool check_bounds=true) const +bool is_empty (size_t i, size_t j, bool check_bounds=true) const   size_t nrow () const noexcept   @@ -229,30 +229,30 @@   BArray< Cell_Type, Data_Type > & operator-= (const std::pair< size_t, size_t > &coords)   -BArrayCell< Cell_Type, Data_Type > operator() (size_t i, size_t j, bool check_bounds=true) +BArrayCell< Cell_Type, Data_Type > operator() (size_t i, size_t j, bool check_bounds=true)   -const Cell_Type operator() (size_t i, size_t j, bool check_bounds=true) const +const Cell_Type operator() (size_t i, size_t j, bool check_bounds=true) const   -void rm_cell (size_t i, size_t j, bool check_bounds=true, bool check_exists=true) +void rm_cell (size_t i, size_t j, bool check_bounds=true, bool check_exists=true)   -void insert_cell (size_t i, size_t j, const Cell< Cell_Type > &v, bool check_bounds, bool check_exists) +void insert_cell (size_t i, size_t j, const Cell< Cell_Type > &v, bool check_bounds, bool check_exists)   -void insert_cell (size_t i, size_t j, Cell< Cell_Type > &&v, bool check_bounds, bool check_exists) +void insert_cell (size_t i, size_t j, Cell< Cell_Type > &&v, bool check_bounds, bool check_exists)   -void insert_cell (size_t i, size_t j, Cell_Type v, bool check_bounds, bool check_exists) +void insert_cell (size_t i, size_t j, Cell_Type v, bool check_bounds, bool check_exists)   void swap_cells (size_t i0, size_t j0, size_t i1, size_t j1, bool check_bounds=true, int check_exists=CHECK::BOTH, int *report=nullptr)   -void toggle_cell (size_t i, size_t j, bool check_bounds=true, int check_exists=EXISTS::UKNOWN) +void toggle_cell (size_t i, size_t j, bool check_bounds=true, int check_exists=EXISTS::UKNOWN)   -void toggle_lock (size_t i, size_t j, bool check_bounds=true) +void toggle_lock (size_t i, size_t j, bool check_bounds=true)  
Column/row wise interchange
void swap_rows (size_t i0, size_t i1, bool check_bounds=true)   void swap_cols (size_t j0, size_t j1, bool check_bounds=true)   -void zero_row (size_t i, bool check_bounds=true) +void zero_row (size_t i, bool check_bounds=true)   void zero_col (size_t j, bool check_bounds=true)   @@ -2141,7 +2141,7 @@

  • BArray
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_cell-members.html b/class_b_array_cell-members.html index fdc7c9e3d..5540467de 100644 --- a/class_b_array_cell-members.html +++ b/class_b_array_cell-members.html @@ -113,7 +113,7 @@ diff --git a/class_b_array_cell.html b/class_b_array_cell.html index 5dd279bca..6fb263e36 100644 --- a/class_b_array_cell.html +++ b/class_b_array_cell.html @@ -430,7 +430,7 @@

  • BArrayCell
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_cell__const-members.html b/class_b_array_cell__const-members.html index eed68900a..8f0418524 100644 --- a/class_b_array_cell__const-members.html +++ b/class_b_array_cell__const-members.html @@ -113,7 +113,7 @@ diff --git a/class_b_array_cell__const.html b/class_b_array_cell__const.html index a3a6a6738..85c316546 100644 --- a/class_b_array_cell__const.html +++ b/class_b_array_cell__const.html @@ -430,7 +430,7 @@

  • BArrayCell_const
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_dense-members.html b/class_b_array_dense-members.html index b46c0c96c..15df1b97a 100644 --- a/class_b_array_dense-members.html +++ b/class_b_array_dense-members.html @@ -170,7 +170,7 @@ diff --git a/class_b_array_dense.html b/class_b_array_dense.html index a7ebea3f3..2d8f9100d 100644 --- a/class_b_array_dense.html +++ b/class_b_array_dense.html @@ -113,21 +113,21 @@    ~BArrayDense ()   -void out_of_range (size_t i, size_t j) const +void out_of_range (size_t i, size_t j) const   -Cell_Type get_cell (size_t i, size_t j, bool check_bounds=true) const +Cell_Type get_cell (size_t i, size_t j, bool check_bounds=true) const   -std::vector< Cell_Type > get_col_vec (size_t i, bool check_bounds=true) const +std::vector< Cell_Type > get_col_vec (size_t i, bool check_bounds=true) const   -std::vector< Cell_Type > get_row_vec (size_t i, bool check_bounds=true) const +std::vector< Cell_Type > get_row_vec (size_t i, bool check_bounds=true) const   -void get_col_vec (std::vector< Cell_Type > *x, size_t i, bool check_bounds=true) const +void get_col_vec (std::vector< Cell_Type > *x, size_t i, bool check_bounds=true) const   -void get_row_vec (std::vector< Cell_Type > *x, size_t i, bool check_bounds=true) const +void get_row_vec (std::vector< Cell_Type > *x, size_t i, bool check_bounds=true) const   -BArrayDenseRow< Cell_Type, Data_Type > & row (size_t i, bool check_bounds=true) +BArrayDenseRow< Cell_Type, Data_Type > & row (size_t i, bool check_bounds=true)   -const BArrayDenseRow_const< Cell_Type, Data_Type > row (size_t i, bool check_bounds=true) const +const BArrayDenseRow_const< Cell_Type, Data_Type > row (size_t i, bool check_bounds=true) const   BArrayDenseCol< Cell_Type, Data_Type > & col (size_t j, bool check_bounds=true)   @@ -150,9 +150,9 @@   const std::vector< Cell_Type > & get_data () const   -const Cell_Type rowsum (size_t i) const +const Cell_Type rowsum (size_t i) const   -const Cell_Type colsum (size_t i) const +const Cell_Type colsum (size_t i) const  
Constructors
Parameters
@@ -192,7 +192,7 @@  Move assignment. More...
 
-void set_data (Data_Type *data_, bool delete_data_=false) +void set_data (Data_Type *data_, bool delete_data_=false)  Set the data object. More...
  Data_Type * D_ptr () @@ -212,7 +212,7 @@
-bool is_empty (size_t i, size_t j, bool check_bounds=true) const +bool is_empty (size_t i, size_t j, bool check_bounds=true) const   size_t nrow () const noexcept   @@ -236,28 +236,28 @@   BArrayDense< Cell_Type, Data_Type > & operator-= (const std::pair< size_t, size_t > &coords)   -BArrayDenseCell< Cell_Type, Data_Type > operator() (size_t i, size_t j, bool check_bounds=true) +BArrayDenseCell< Cell_Type, Data_Type > operator() (size_t i, size_t j, bool check_bounds=true)   -const Cell_Type operator() (size_t i, size_t j, bool check_bounds=true) const +const Cell_Type operator() (size_t i, size_t j, bool check_bounds=true) const   -void rm_cell (size_t i, size_t j, bool check_bounds=true, bool check_exists=true) +void rm_cell (size_t i, size_t j, bool check_bounds=true, bool check_exists=true)   -void insert_cell (size_t i, size_t j, const Cell< Cell_Type > &v, bool check_bounds, bool) +void insert_cell (size_t i, size_t j, const Cell< Cell_Type > &v, bool check_bounds, bool)   -void insert_cell (size_t i, size_t j, Cell_Type v, bool check_bounds, bool) +void insert_cell (size_t i, size_t j, Cell_Type v, bool check_bounds, bool)   void swap_cells (size_t i0, size_t j0, size_t i1, size_t j1, bool check_bounds=true, int check_exists=CHECK::BOTH, int *report=nullptr)   -void toggle_cell (size_t i, size_t j, bool check_bounds=true, int check_exists=EXISTS::UKNOWN) +void toggle_cell (size_t i, size_t j, bool check_bounds=true, int check_exists=EXISTS::UKNOWN)   -void toggle_lock (size_t i, size_t j, bool check_bounds=true) +void toggle_lock (size_t i, size_t j, bool check_bounds=true)  
Column/row wise interchange
void swap_rows (size_t i0, size_t i1, bool check_bounds=true)   void swap_cols (size_t j0, size_t j1, bool check_bounds=true)   -void zero_row (size_t i, bool check_bounds=true) +void zero_row (size_t i, bool check_bounds=true)   void zero_col (size_t j, bool check_bounds=true)   @@ -2668,7 +2668,7 @@

  • BArrayDense
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_dense_cell-members.html b/class_b_array_dense_cell-members.html index 9565dde97..4194a35f6 100644 --- a/class_b_array_dense_cell-members.html +++ b/class_b_array_dense_cell-members.html @@ -117,7 +117,7 @@ diff --git a/class_b_array_dense_cell.html b/class_b_array_dense_cell.html index bc7c5ee44..2e79d114c 100644 --- a/class_b_array_dense_cell.html +++ b/class_b_array_dense_cell.html @@ -550,7 +550,7 @@

  • BArrayDenseCell
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_dense_cell__const.html b/class_b_array_dense_cell__const.html index eba3a1adf..81a3ee014 100644 --- a/class_b_array_dense_cell__const.html +++ b/class_b_array_dense_cell__const.html @@ -111,7 +111,7 @@ diff --git a/class_b_array_dense_col-members.html b/class_b_array_dense_col-members.html index 3f30664da..f9ba4841f 100644 --- a/class_b_array_dense_col-members.html +++ b/class_b_array_dense_col-members.html @@ -112,7 +112,7 @@ diff --git a/class_b_array_dense_col.html b/class_b_array_dense_col.html index e4aae5bd3..bb86b48ab 100644 --- a/class_b_array_dense_col.html +++ b/class_b_array_dense_col.html @@ -113,7 +113,7 @@   size_t size () const noexcept   -std::pair< size_t, Cell_Type * > & operator() (size_t i) +std::pair< size_t, Cell_Type * > & operator() (size_t i)   - +

@@ -379,7 +379,7 @@

  • BArrayDenseCol
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_dense_col__const-members.html b/class_b_array_dense_col__const-members.html index 9a9221444..e63fabcbe 100644 --- a/class_b_array_dense_col__const-members.html +++ b/class_b_array_dense_col__const-members.html @@ -111,7 +111,7 @@ diff --git a/class_b_array_dense_col__const.html b/class_b_array_dense_col__const.html index 1a8896cf7..d932dc4cb 100644 --- a/class_b_array_dense_col__const.html +++ b/class_b_array_dense_col__const.html @@ -113,7 +113,7 @@

 
size_t size () const noexcept
 
const std::pair< size_t, Cell_Type * > operator() (size_t i) const
const std::pair< size_t, Cell_Type * > operator() (size_t i) const
 
@@ -2092,7 +2401,7 @@

@@ -351,7 +351,7 @@

  • BArrayDenseCol_const
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_dense_row-members.html b/class_b_array_dense_row-members.html index a3f44054c..8ed80fdb3 100644 --- a/class_b_array_dense_row-members.html +++ b/class_b_array_dense_row-members.html @@ -112,7 +112,7 @@ diff --git a/class_b_array_dense_row.html b/class_b_array_dense_row.html index ca8764d6d..3ccc7c2d1 100644 --- a/class_b_array_dense_row.html +++ b/class_b_array_dense_row.html @@ -105,7 +105,7 @@ - + @@ -113,7 +113,7 @@ - +

Public Member Functions

 BArrayDenseRow (BArrayDense< Cell_Type, Data_Type > &array_, size_t i)
 BArrayDenseRow (BArrayDense< Cell_Type, Data_Type > &array_, size_t i)
 
Row_type< Cell_Type >::iterator & begin ()
 
 
size_t size () const noexcept
 
std::pair< size_t, Cell< Cell_Type > > & operator() (size_t i)
std::pair< size_t, Cell< Cell_Type > > & operator() (size_t i)
 
- + @@ -811,7 +811,7 @@

  • DEFM
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_d_e_f_m_counter_data-members.html b/class_d_e_f_m_counter_data-members.html index 4c3997088..e3cf4a1b3 100644 --- a/class_d_e_f_m_counter_data-members.html +++ b/class_d_e_f_m_counter_data-members.html @@ -114,7 +114,7 @@ diff --git a/class_d_e_f_m_counter_data.html b/class_d_e_f_m_counter_data.html index c021daf76..d926f8aaa 100644 --- a/class_d_e_f_m_counter_data.html +++ b/class_d_e_f_m_counter_data.html @@ -112,11 +112,11 @@

- + - + - + @@ -146,7 +146,7 @@ diff --git a/class_d_e_f_m_data-members.html b/class_d_e_f_m_data-members.html index dc1250cd1..061ee3ab5 100644 --- a/class_d_e_f_m_data-members.html +++ b/class_d_e_f_m_data-members.html @@ -119,7 +119,7 @@ diff --git a/class_d_e_f_m_data.html b/class_d_e_f_m_data.html index 379a3c3da..df5db7b7b 100644 --- a/class_d_e_f_m_data.html +++ b/class_d_e_f_m_data.html @@ -114,10 +114,10 @@ - + - + @@ -164,7 +164,7 @@ diff --git a/class_d_e_f_m_rule_data-members.html b/class_d_e_f_m_rule_data-members.html index acadc72b7..1321cedb3 100644 --- a/class_d_e_f_m_rule_data-members.html +++ b/class_d_e_f_m_rule_data-members.html @@ -114,7 +114,7 @@ diff --git a/class_d_e_f_m_rule_data.html b/class_d_e_f_m_rule_data.html index afb5f859e..4cc6c747a 100644 --- a/class_d_e_f_m_rule_data.html +++ b/class_d_e_f_m_rule_data.html @@ -114,11 +114,11 @@

@@ -379,7 +379,7 @@

  • BArrayDenseRow
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_dense_row__const-members.html b/class_b_array_dense_row__const-members.html index 8b3ec62a9..f59659890 100644 --- a/class_b_array_dense_row__const-members.html +++ b/class_b_array_dense_row__const-members.html @@ -111,7 +111,7 @@ diff --git a/class_b_array_dense_row__const.html b/class_b_array_dense_row__const.html index c828f8f63..658251889 100644 --- a/class_b_array_dense_row__const.html +++ b/class_b_array_dense_row__const.html @@ -105,7 +105,7 @@ - + @@ -113,7 +113,7 @@ - +

Public Member Functions

 BArrayDenseRow_const (const BArrayDense< Cell_Type, Data_Type > &array_, size_t i)
 BArrayDenseRow_const (const BArrayDense< Cell_Type, Data_Type > &array_, size_t i)
 
Row_type< Cell_Type >::const_iterator begin () const
 
 
size_t size () const noexcept
 
const std::pair< size_t, Cell< Cell_Type > > operator() (size_t i) const
const std::pair< size_t, Cell< Cell_Type > > operator() (size_t i) const
 
- + - + @@ -131,7 +131,7 @@ - + @@ -679,7 +679,7 @@

  • Counter
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_counters-members.html b/class_counters-members.html index 1eab2583f..b4d7b8420 100644 --- a/class_counters-members.html +++ b/class_counters-members.html @@ -118,7 +118,7 @@ diff --git a/class_counters.html b/class_counters.html index 461bab7d5..b18ce14c1 100644 --- a/class_counters.html +++ b/class_counters.html @@ -131,7 +131,7 @@

- + @@ -140,7 +140,7 @@ - +

@@ -351,7 +351,7 @@

  • BArrayDenseRow_const
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_row-members.html b/class_b_array_row-members.html index 61f901fc1..f63b9a0a1 100644 --- a/class_b_array_row-members.html +++ b/class_b_array_row-members.html @@ -113,7 +113,7 @@ diff --git a/class_b_array_row.html b/class_b_array_row.html index f197b474c..845458a4b 100644 --- a/class_b_array_row.html +++ b/class_b_array_row.html @@ -354,7 +354,7 @@

  • BArrayRow
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_row__const-members.html b/class_b_array_row__const-members.html index f41229092..2a0db2d53 100644 --- a/class_b_array_row__const-members.html +++ b/class_b_array_row__const-members.html @@ -113,7 +113,7 @@ diff --git a/class_b_array_row__const.html b/class_b_array_row__const.html index 6a99f8e98..473bb78b7 100644 --- a/class_b_array_row__const.html +++ b/class_b_array_row__const.html @@ -354,7 +354,7 @@

  • BArrayRow_const
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_vector-members.html b/class_b_array_vector-members.html index 9b15792ce..1c55a7d57 100644 --- a/class_b_array_vector-members.html +++ b/class_b_array_vector-members.html @@ -118,7 +118,7 @@ diff --git a/class_b_array_vector.html b/class_b_array_vector.html index 184d72adb..e475ab8d7 100644 --- a/class_b_array_vector.html +++ b/class_b_array_vector.html @@ -585,7 +585,7 @@

  • BArrayVector
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_b_array_vector__const-members.html b/class_b_array_vector__const-members.html index f75bf8996..db9d39ab8 100644 --- a/class_b_array_vector__const-members.html +++ b/class_b_array_vector__const-members.html @@ -118,7 +118,7 @@ diff --git a/class_b_array_vector__const.html b/class_b_array_vector__const.html index 77bcfba8a..b916d1227 100644 --- a/class_b_array_vector__const.html +++ b/class_b_array_vector__const.html @@ -567,7 +567,7 @@

  • BArrayVector_const
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_cell-members.html b/class_cell-members.html index b4a89399d..87ac02089 100644 --- a/class_cell-members.html +++ b/class_cell-members.html @@ -124,7 +124,7 @@ diff --git a/class_cell.html b/class_cell.html index 0accb1e4d..e2ac2c972 100644 --- a/class_cell.html +++ b/class_cell.html @@ -695,7 +695,7 @@

  • Cell
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_cell__const.html b/class_cell__const.html index 9a9925cac..3dd188345 100644 --- a/class_cell__const.html +++ b/class_cell__const.html @@ -111,7 +111,7 @@ diff --git a/class_const_b_array_row_iter-members.html b/class_const_b_array_row_iter-members.html index 62ecf9834..d83ac94d3 100644 --- a/class_const_b_array_row_iter-members.html +++ b/class_const_b_array_row_iter-members.html @@ -110,7 +110,7 @@ diff --git a/class_const_b_array_row_iter.html b/class_const_b_array_row_iter.html index 11582a41f..8315a535c 100644 --- a/class_const_b_array_row_iter.html +++ b/class_const_b_array_row_iter.html @@ -278,7 +278,7 @@

  • ConstBArrayRowIter
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_counter-members.html b/class_counter-members.html index 5556e5f20..cee1cd83f 100644 --- a/class_counter-members.html +++ b/class_counter-members.html @@ -123,7 +123,7 @@ diff --git a/class_counter.html b/class_counter.html index 85f3d2245..2b5fc00fa 100644 --- a/class_counter.html +++ b/class_counter.html @@ -110,9 +110,9 @@ Public Member Functions

 ~Counter ()
 
double count (Array_Type &Array, size_t i, size_t j)
double count (Array_Type &Array, size_t i, size_t j)
 
double init (Array_Type &Array, size_t i, size_t j)
double init (Array_Type &Array, size_t i, size_t j)
 
std::string get_name () const
 
 Counter ()
 
 Counter (Counter_fun_type< Array_Type, Data_Type > count_fun_, Counter_fun_type< Array_Type, Data_Type > init_fun_, Hasher_fun_type< Array_Type, Data_Type > hasher_fun_, Data_Type data_, std::string name_="", std::string desc_="")
 Counter (Counter_fun_type< Array_Type, Data_Type > count_fun_, Counter_fun_type< Array_Type, Data_Type > init_fun_, Hasher_fun_type< Array_Type, Data_Type > hasher_fun_, Data_Type data_, std::string name_="", std::string desc_="")
 
 Counter (const Counter< Array_Type, Data_Type > &counter_)
 Copy constructor. More...
 
void add_counter (Counter< Array_Type, Data_Type > counter)
 
void add_counter (Counter_fun_type< Array_Type, Data_Type > count_fun_, Counter_fun_type< Array_Type, Data_Type > init_fun_, Hasher_fun_type< Array_Type, Data_Type > hasher_fun_, Data_Type data_, std::string name_="", std::string desc_="")
void add_counter (Counter_fun_type< Array_Type, Data_Type > count_fun_, Counter_fun_type< Array_Type, Data_Type > init_fun_, Hasher_fun_type< Array_Type, Data_Type > hasher_fun_, Data_Type data_, std::string name_="", std::string desc_="")
 
std::vector< std::string > get_names () const
 
std::vector< double > gen_hash (const Array_Type &array, bool add_dims=true)
 Generates a hash for the given array according to the counters. More...
 
void add_hash (Hasher_fun_type< Array_Type, Data_Type > fun_)
void add_hash (Hasher_fun_type< Array_Type, Data_Type > fun_)
 

Detailed Description

@@ -573,7 +573,7 @@

  • Counters
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_d_e_f_m-members.html b/class_d_e_f_m-members.html index 09684a6e2..4644674fb 100644 --- a/class_d_e_f_m-members.html +++ b/class_d_e_f_m-members.html @@ -124,7 +124,7 @@ diff --git a/class_d_e_f_m.html b/class_d_e_f_m.html index 6e9612dd9..b39b55b63 100644 --- a/class_d_e_f_m.html +++ b/class_d_e_f_m.html @@ -148,7 +148,7 @@

 
barry::FreqTable< int > motif_census (std::vector< size_t > idx)
 
std::vector< double > logodds (const std::vector< double > &par, size_t i, size_t j)
std::vector< double > logodds (const std::vector< double > &par, size_t i, size_t j)
 
void set_names (std::vector< std::string > Y_names_, std::vector< std::string > X_names_)
 
 
 DEFMCounterData (const std::vector< size_t > indices_, const std::vector< double > numbers_, const std::vector< bool > logical_, bool is_motif_=true)
 
size_t idx (size_t i) const
size_t idx (size_t i) const
 
double num (size_t i) const
double num (size_t i) const
 
bool is_true (size_t i) const
bool is_true (size_t i) const
 
 ~DEFMCounterData ()
 
 DEFMData (DEFMArray *array_, const double *covariates_, size_t obs_start_, size_t X_ncol_, size_t X_nrow_)
 Constructor. More...
 
double operator() (size_t i, size_t j) const
double operator() (size_t i, size_t j) const
 Access to the row (i) colum (j) data. More...
 
double at (size_t i, size_t j) const
double at (size_t i, size_t j) const
 
size_t ncol () const
 
- + - + - + @@ -150,7 +150,7 @@ diff --git a/class_d_e_f_m_rule_dyn_data-members.html b/class_d_e_f_m_rule_dyn_data-members.html index 60aab7490..4f1276b60 100644 --- a/class_d_e_f_m_rule_dyn_data-members.html +++ b/class_d_e_f_m_rule_dyn_data-members.html @@ -117,7 +117,7 @@ diff --git a/class_d_e_f_m_rule_dyn_data.html b/class_d_e_f_m_rule_dyn_data.html index cec0524b1..51b8dc58f 100644 --- a/class_d_e_f_m_rule_dyn_data.html +++ b/class_d_e_f_m_rule_dyn_data.html @@ -128,11 +128,11 @@ - + - + - + @@ -167,7 +167,7 @@ diff --git a/class_entries-members.html b/class_entries-members.html index 0d428f036..ad0b6d911 100644 --- a/class_entries-members.html +++ b/class_entries-members.html @@ -111,7 +111,7 @@ diff --git a/class_entries.html b/class_entries.html index 4030d41c0..18a5c4c65 100644 --- a/class_entries.html +++ b/class_entries.html @@ -323,7 +323,7 @@

  • Entries
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_flock-members.html b/class_flock-members.html index a79a69716..6cdaec1de 100644 --- a/class_flock-members.html +++ b/class_flock-members.html @@ -110,7 +110,7 @@

- + @@ -130,7 +130,7 @@ diff --git a/class_flock.html b/class_flock.html index 3db7f31c7..eef1f86c5 100644 --- a/class_flock.html +++ b/class_flock.html @@ -130,10 +130,10 @@ - - - - + + + + @@ -316,7 +316,7 @@

-

Definition at line 224 of file flock-meat.hpp.

+

Definition at line 225 of file flock-meat.hpp.

@@ -483,8 +483,8 @@

-

◆ likelihood_joint()

+ +

◆ likelihood_joint()

@@ -561,7 +561,7 @@

-

Definition at line 167 of file flock-meat.hpp.

+

Definition at line 168 of file flock-meat.hpp.

@@ -588,7 +588,7 @@

-

Definition at line 195 of file flock-meat.hpp.

+

Definition at line 196 of file flock-meat.hpp.

@@ -615,7 +615,7 @@

-

Definition at line 181 of file flock-meat.hpp.

+

Definition at line 182 of file flock-meat.hpp.

@@ -642,7 +642,7 @@

-

Definition at line 209 of file flock-meat.hpp.

+

Definition at line 210 of file flock-meat.hpp.

@@ -669,7 +669,7 @@

-

Definition at line 174 of file flock-meat.hpp.

+

Definition at line 175 of file flock-meat.hpp.

@@ -717,7 +717,7 @@

Returns
Geese*
-

Definition at line 302 of file flock-meat.hpp.

+

Definition at line 303 of file flock-meat.hpp.

@@ -757,7 +757,7 @@

Definition at line 231 of file flock-meat.hpp.

+

Definition at line 232 of file flock-meat.hpp.

@@ -784,7 +784,7 @@

-

Definition at line 258 of file flock-meat.hpp.

+

Definition at line 259 of file flock-meat.hpp.

@@ -847,7 +847,7 @@

-

Definition at line 217 of file flock-meat.hpp.

+

Definition at line 218 of file flock-meat.hpp.

@@ -942,7 +942,7 @@

  • Flock
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_flock.js b/class_flock.js index 7670e86c4..7b8c81311 100644 --- a/class_flock.js +++ b/class_flock.js @@ -10,7 +10,7 @@ var class_flock = [ "get_stats_target", "class_flock.html#a26462201318e4bf34756a2a14e2cc3fb", null ], [ "get_support_fun", "class_flock.html#add876188b5f16af037525e71eaf7fc05", null ], [ "init", "class_flock.html#a5ddef5ec4a7b150a354db11bb6b0c593", null ], - [ "likelihood_joint", "class_flock.html#a275193d11c7ce3b8ec5dc18c8fab3e2e", null ], + [ "likelihood_joint", "class_flock.html#a7bcad6b3c794cefc1b4bb613d13ddf71", null ], [ "nfuns", "class_flock.html#a55cf3311be1c2129466a666bbe90a3fb", null ], [ "nleafs", "class_flock.html#a68af1602108455f9d339bc4c2994e9ab", null ], [ "nnodes", "class_flock.html#ae1f4eb8ade1c7f369e1f1eddbced3b2b", null ], diff --git a/class_freq_table-members.html b/class_freq_table-members.html index 5f2399dab..cf10fb7b0 100644 --- a/class_freq_table-members.html +++ b/class_freq_table-members.html @@ -115,7 +115,7 @@ diff --git a/class_freq_table.html b/class_freq_table.html index 3bb1ef1da..a34b16a7b 100644 --- a/class_freq_table.html +++ b/class_freq_table.html @@ -491,7 +491,7 @@

  • FreqTable
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_geese-members.html b/class_geese-members.html index 1fcd220d0..043ac5dae 100644 --- a/class_geese-members.html +++ b/class_geese-members.html @@ -124,7 +124,7 @@

- + @@ -159,7 +159,7 @@ diff --git a/class_geese.html b/class_geese.html index 13e2d603d..a043ee35f 100644 --- a/class_geese.html +++ b/class_geese.html @@ -118,8 +118,8 @@ - - + + @@ -870,8 +870,8 @@

-

◆ likelihood()

+ +

◆ likelihood()

@@ -1883,7 +1883,7 @@

  • Geese
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/class_geese.js b/class_geese.js index eff461233..62e71b049 100644 --- a/class_geese.js +++ b/class_geese.js @@ -19,7 +19,7 @@ var class_geese = [ "inherit_support", "class_geese.html#aa95abe540b9977592bcc88e77619d070", null ], [ "init", "class_geese.html#a4eec9d20198fde392b7c5ee0060eff05", null ], [ "init_node", "class_geese.html#a3855898a556e2ac1d30529d3bc35f13a", null ], - [ "likelihood", "class_geese.html#a6eb9e15bdf70319857e4ad90baefdece", null ], + [ "likelihood", "class_geese.html#a58fb080f76c71883938b62d5369b6688", null ], [ "likelihood_exhaust", "class_geese.html#af2d4bac42cc7c8287fb6853d50882115", null ], [ "nannotations", "class_geese.html#abfec2a7462cc949246a68d540827205f", null ], [ "nfuns", "class_geese.html#ae569fc1b0ade56fc3ccc4d35214fca81", null ], diff --git a/class_model-members.html b/class_model-members.html index 235720ee3..0923bd71d 100644 --- a/class_model-members.html +++ b/class_model-members.html @@ -99,17 +99,17 @@

This is the complete list of members for Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >, including all inherited members.

Public Member Functions

double num (size_t i) const
double num (size_t i) const
 
size_t idx (size_t i) const
size_t idx (size_t i) const
 
bool is_true (size_t i) const
bool is_true (size_t i) const
 
 DEFMRuleData ()
 
 ~DEFMRuleDynData ()
 
- Public Member Functions inherited from DEFMRuleData
double num (size_t i) const
double num (size_t i) const
 
size_t idx (size_t i) const
size_t idx (size_t i) const
 
bool is_true (size_t i) const
bool is_true (size_t i) const
 
 DEFMRuleData ()
 
get_support_fun()Flockinline
init(size_t bar_width=BARRY_PROGRESS_BAR_WIDTH)Flockinline
initializedFlock
likelihood_joint(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true)Flockinline
likelihood_joint(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true,)Flockinline
modelFlock
nfunctionsFlock
nfuns() const noexceptFlockinline
 
PhyloModel * get_model ()
 
double likelihood_joint (const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true)
 Returns the joint likelihood of the model. More...
 
Geese * operator() (size_t i, bool check_bounds=true)
double likelihood_joint (const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true,)
 Returns the joint likelihood of the model. More...
 
Geese * operator() (size_t i, bool check_bounds=true)
 Access the i-th geese element. More...
 
Information about the model
init(size_t bar_width=BARRY_PROGRESS_BAR_WIDTH)Geeseinline
init_node(Node &n)Geeseinline
initializedGeese
likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true)Geeseinline
likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true,)Geeseinline
likelihood_exhaust(const std::vector< double > &par)Geeseinline
map_to_state_idGeese
nannotations() const noexceptGeeseinline
 
void calc_reduced_sequence ()
 
double likelihood (const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true)
 
double likelihood (const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true,)
 
double likelihood_exhaust (const std::vector< double > &par)
 
std::vector< double > get_probabilities () const
- - - - - + + + + + - - + + - - + + @@ -117,60 +117,60 @@ - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + - - - - - + + + + + - - - + + + - + - + - + - - + + - - - + + + - + - + @@ -181,7 +181,7 @@ diff --git a/class_model.html b/class_model.html index f99241e89..691403523 100644 --- a/class_model.html +++ b/class_model.html @@ -128,9 +128,9 @@ - + - + @@ -138,56 +138,56 @@ - + - + - + - + - + - - - - - - - - - - + + + + + + + + + + - + - + - + - + - + - + - + - + - + - - - - - - - - - - + + + + + + + + + + @@ -391,7 +391,7 @@

-

Definition at line 140 of file model-meat.hpp.

+

Definition at line 153 of file model-meat.hpp.

@@ -407,7 +407,7 @@

add_array(const Array_Type &Array_, bool force_new=false)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
add_counter(Counter< Array_Type, Data_Counter_Type > &counter)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
add_counter(Counter_fun_type< Array_Type, Data_Counter_Type > count_fun_, Counter_fun_type< Array_Type, Data_Counter_Type > init_fun_=nullptr, Data_Counter_Type data_=nullptr)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
add_hasher(Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
add_rule(Rule< Array_Type, Data_Rule_Type > &rule)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
add_array(const Array_Type &Array_, bool force_new=false)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
add_counter(Counter< Array_Type, Data_Counter_Type > &counter)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
add_counter(Counter_fun_type< Array_Type, Data_Counter_Type > count_fun_, Counter_fun_type< Array_Type, Data_Counter_Type > init_fun_=nullptr, Data_Counter_Type data_=nullptr)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
add_hasher(Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
add_rule(Rule< Array_Type, Data_Rule_Type > &rule)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
add_rule(Rule_fun_type< Array_Type, Data_Rule_Type > count_fun_, Data_Rule_Type data_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > &rule)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
add_rule_dyn(Rule_fun_type< Array_Type, Data_Rule_Dyn_Type > count_fun_, Data_Rule_Dyn_Type data_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > &rule)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
add_rule_dyn(Rule_fun_type< Array_Type, Data_Rule_Dyn_Type > count_fun_, Data_Rule_Dyn_Type data_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
arrays2supportModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
colnames() constModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
conditional_prob(const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
colnames() constModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
conditional_prob(const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
counter_funModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
countersModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
delete_countersModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
delete_rulesModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
delete_rules_dynModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
first_calc_doneModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
gen_key(const Array_Type &Array_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_arrays2support()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_counters()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_norm_const(const std::vector< double > &params, const size_t &i, bool as_log=false)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_pset(const size_t &i)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_pset_arrays()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_pset_probs()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_pset_stats(const size_t &i)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_pset_stats()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_rengine() constModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_rules()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_rules_dyn()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_stats_support()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_stats_target()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
get_support_fun()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
gen_key(const Array_Type &Array_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_arrays2support()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_counters()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_norm_const(const std::vector< double > &params, const size_t &i, bool as_log=false)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_pset(const size_t &i)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_pset_arrays()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_pset_probs()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_pset_stats(const size_t &i)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_pset_stats()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_rengine() constModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_rules()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_rules_dyn()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_stats_support()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_stats_target()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
get_support_fun()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
keys2supportModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
likelihood(const std::vector< double > &params, const size_t &i, bool as_log=false)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
likelihood(const std::vector< double > &params, const Array_Type &Array_, int i=-1, bool as_log=false)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
likelihood(const std::vector< double > &params, const std::vector< double > &target_, const size_t &i, bool as_log=false)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
likelihood(const std::vector< double > &params, const double *target_, const size_t &i, bool as_log=false)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
likelihood_total(const std::vector< double > &params, bool as_log=false)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
likelihood(const std::vector< double > &params, const size_t &i, bool as_log=false,)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
likelihood(const std::vector< double > &params, const Array_Type &Array_, int i=-1, bool as_log=false,)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
likelihood(const std::vector< double > &params, const std::vector< double > &target_, const size_t &i, bool as_log=false,)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
likelihood(const std::vector< double > &params, const double *target_, const size_t &i, bool as_log=false,)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
likelihood_total(const std::vector< double > &params, bool as_log=false,)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
Model()Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
Model(size_t size_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
Model(const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
normalizing_constantsModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
nrules() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
nrules_dyn() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
nterms() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
nrules() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
nrules_dyn() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
nterms() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
operator=(const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
params_lastModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
print() constModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inlinevirtual
print_stats(size_t i) constModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
print_stats(size_t i) constModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
pset_arraysModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
pset_probsModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
pset_statsModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
rengineModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
rulesModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
rules_dynModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
sample(const Array_Type &Array_, const std::vector< double > &params={})Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
sample(const Array_Type &Array_, const std::vector< double > &params={})Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
sample(const size_t &i, const std::vector< double > &params)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
set_rengine(std::mt19937 *rengine_, bool delete_=false)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
set_seed(size_t s)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
set_transform_model(std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
size() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
size_unique() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
set_transform_model(std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
size() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
size_unique() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
stats_supportModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
stats_support_n_arraysModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
stats_targetModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
store_psets() noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
store_psets() noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
support_funModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
support_size() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
support_size() const noexceptModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >inline
transform_model(double *data, size_t k)Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >
transform_model_funModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
transform_model_term_namesModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >protected
 
 Model (size_t size_)
 
 Model (const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
 Model (const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
 
Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & operator= (const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & operator= (const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
 
virtual ~Model ()
 
 
std::vector< double > gen_key (const Array_Type &Array_)
 
size_t add_array (const Array_Type &Array_, bool force_new=false)
size_t add_array (const Array_Type &Array_, bool force_new=false)
 Adds an array to the support of not already included. More...
 
void print_stats (size_t i) const
void print_stats (size_t i) const
 
virtual void print () const
 Prints information about the model. More...
 
Array_Type sample (const Array_Type &Array_, const std::vector< double > &params={})
Array_Type sample (const Array_Type &Array_, const std::vector< double > &params={})
 
Array_Type sample (const size_t &i, const std::vector< double > &params)
Array_Type sample (const size_t &i, const std::vector< double > &params)
 
double conditional_prob (const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)
double conditional_prob (const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)
 Conditional probability ("Gibbs sampler") More...
 
const std::mt19937 * get_rengine () const
 
Counters< Array_Type, Data_Counter_Type > * get_counters ()
 
Rules< Array_Type, Data_Rule_Type > * get_rules ()
 
Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn ()
 
Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > * get_support_fun ()
 
const std::mt19937 * get_rengine () const
 
Counters< Array_Type, Data_Counter_Type > * get_counters ()
 
Rules< Array_Type, Data_Rule_Type > * get_rules ()
 
Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn ()
 
Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > * get_support_fun ()
 
Wrappers for the <tt>Counters</tt> member.

These will add counters to the model, which are shared by the support and the actual counter function.

void add_counter (Counter< Array_Type, Data_Counter_Type > &counter)
void add_counter (Counter< Array_Type, Data_Counter_Type > &counter)
 
void add_counter (Counter_fun_type< Array_Type, Data_Counter_Type > count_fun_, Counter_fun_type< Array_Type, Data_Counter_Type > init_fun_=nullptr, Data_Counter_Type data_=nullptr)
void add_counter (Counter_fun_type< Array_Type, Data_Counter_Type > count_fun_, Counter_fun_type< Array_Type, Data_Counter_Type > init_fun_=nullptr, Data_Counter_Type data_=nullptr)
 
void set_counters (Counters< Array_Type, Data_Counter_Type > *counters_)
void set_counters (Counters< Array_Type, Data_Counter_Type > *counters_)
 
void add_hasher (Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)
void add_hasher (Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)
 
Wrappers for the <tt>Rules</tt> member.

These will add rules to the model, which are shared by the support and the actual counter function.

void add_rule (Rule< Array_Type, Data_Rule_Type > &rule)
void add_rule (Rule< Array_Type, Data_Rule_Type > &rule)
 
void add_rule (Rule_fun_type< Array_Type, Data_Rule_Type > count_fun_, Data_Rule_Type data_)
void add_rule (Rule_fun_type< Array_Type, Data_Rule_Type > count_fun_, Data_Rule_Type data_)
 
void set_rules (Rules< Array_Type, Data_Rule_Type > *rules_)
void set_rules (Rules< Array_Type, Data_Rule_Type > *rules_)
 
void add_rule_dyn (Rule< Array_Type, Data_Rule_Dyn_Type > &rule)
 
void add_rule_dyn (Rule_fun_type< Array_Type, Data_Rule_Dyn_Type > count_fun_, Data_Rule_Dyn_Type data_)
void add_rule_dyn (Rule_fun_type< Array_Type, Data_Rule_Dyn_Type > count_fun_, Data_Rule_Dyn_Type data_)
 
void set_rules_dyn (Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
void set_rules_dyn (Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
 
Likelihood functions.

Calculation of likelihood functions is done reusing normalizing constants. Before recalculating the normalizing constant, the function checks whether params matches the last set vector of parameters used to compute it.

@@ -199,16 +199,16 @@
double likelihood (const std::vector< double > &params, const size_t &i, bool as_log=false)
 
double likelihood (const std::vector< double > &params, const Array_Type &Array_, int i=-1, bool as_log=false)
 
double likelihood (const std::vector< double > &params, const std::vector< double > &target_, const size_t &i, bool as_log=false)
 
double likelihood (const std::vector< double > &params, const double *target_, const size_t &i, bool as_log=false)
 
double likelihood_total (const std::vector< double > &params, bool as_log=false)
 
double likelihood (const std::vector< double > &params, const size_t &i, bool as_log=false,)
 
double likelihood (const std::vector< double > &params, const Array_Type &Array_, int i=-1, bool as_log=false,)
 
double likelihood (const std::vector< double > &params, const std::vector< double > &target_, const size_t &i, bool as_log=false,)
 
double likelihood (const std::vector< double > &params, const double *target_, const size_t &i, bool as_log=false,)
 
double likelihood_total (const std::vector< double > &params, bool as_log=false,)
 
Extract elements by index
Parameters
@@ -219,12 +219,12 @@ - + - - - - + + + + - - - - - - - - - - - - - - + + + + + + + + + + + + + + - +
double get_norm_const (const std::vector< double > &params, const size_t &i, bool as_log=false)
double get_norm_const (const std::vector< double > &params, const size_t &i, bool as_log=false)
 
const std::vector< Array_Type > * get_pset (const size_t &i)
 
const std::vector< double > * get_pset_stats (const size_t &i)
 
const std::vector< Array_Type > * get_pset (const size_t &i)
 
const std::vector< double > * get_pset_stats (const size_t &i)
 
Size of the model

Number of different supports included in the model

This will return the size of stats_target.

@@ -249,25 +249,25 @@
std::vector< std::string > colnames () const
 
std::vector< std::vector< double > > * get_stats_target ()
 Raw pointers to the support and target statistics. More...
 
std::vector< std::vector< double > > * get_stats_support ()
 
std::vector< size_t > * get_arrays2support ()
 
std::vector< std::vector< Array_Type > > * get_pset_arrays ()
 
std::vector< std::vector< double > > * get_pset_stats ()
 Statistics of the support(s) More...
 
std::vector< std::vector< double > > * get_pset_probs ()
 
std::vector< std::vector< double > > * get_stats_target ()
 Raw pointers to the support and target statistics. More...
 
std::vector< std::vector< double > > * get_stats_support ()
 
std::vector< size_t > * get_arrays2support ()
 
std::vector< std::vector< Array_Type > > * get_pset_arrays ()
 
std::vector< std::vector< double > > * get_pset_stats ()
 Statistics of the support(s) More...
 
std::vector< std::vector< double > > * get_pset_probs ()
 
void set_transform_model (std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)
 Set the transform_model_fun object. More...
 
std::vector< double > transform_model (double *data, size_t k)
std::vector< double > transform_model (double *data, size_t k)
 
- + @@ -338,15 +338,15 @@ - + - + - + - +

@@ -288,7 +288,7 @@

 
bool delete_rules_dyn = false
 
std::function< std::vector< double >double *, size_t k)> transform_model_fun = nullptr
std::function< std::vector< double >double *, size_t k)> transform_model_fun = nullptr
 Transformation of the model. More...
 
std::vector< std::string > transform_model_term_names
Functions to compute statistics

Arguments are recycled to save memory and computation.

Counters< Array_Type, Data_Counter_Type > * counters
Counters< Array_Type, Data_Counter_Type > * counters
 
Rules< Array_Type, Data_Rule_Type > * rules
Rules< Array_Type, Data_Rule_Type > * rules
 
Rules< Array_Type, Data_Rule_Dyn_Type > * rules_dyn
 
Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > support_fun
Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > support_fun
 
StatsCounter< Array_Type, Data_Counter_Type > counter_fun
StatsCounter< Array_Type, Data_Counter_Type > counter_fun
 

Detailed Description

@@ -381,7 +381,7 @@

- +
Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::ModelModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Model

- + @@ -421,7 +421,7 @@

-

Definition at line 174 of file model-meat.hpp.

+

Definition at line 187 of file model-meat.hpp.

@@ -437,9 +437,9 @@

Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Model Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Model ( size_t  size_)
- + - + @@ -451,7 +451,7 @@

-

Definition at line 212 of file model-meat.hpp.

+

Definition at line 225 of file model-meat.hpp.

@@ -467,7 +467,7 @@

Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Model Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Model (const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &  Model_)
- + @@ -491,10 +491,13 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+

virtual Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::~Model virtual Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::~Model ( )
+ + @@ -2066,7 +2375,7 @@

- + @@ -511,6 +514,11 @@

+inline +

+
size_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_array size_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_array ( const Array_Type &  Array_,

Adds an array to the support of not already included.

@@ -522,6 +530,9 @@

Returns
The number of the array.
+

When computing with the powerset, we need to grow the corresponding vectors on the fly

+ +

Definition at line 458 of file model-meat.hpp.

@@ -531,18 +542,28 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- + - +
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_counter void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_counter (Counter< Array_Type, Data_Counter_Type > & Counter< Array_Type, Data_Counter_Type > &  counter)
+ 		+inline
+

Definition at line 334 of file model-meat.hpp.

+
@@ -551,24 +572,27 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + - + - + - + @@ -657,18 +708,28 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+

- + - + - + - + @@ -577,8 +601,15 @@

+inline +

+
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_counter void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_counter (Counter_fun_type< Array_Type, Data_Counter_Type > Counter_fun_type< Array_Type, Data_Counter_Type >  count_fun_,
Counter_fun_type< Array_Type, Data_Counter_Type > Counter_fun_type< Array_Type, Data_Counter_Type >  init_fun_ = nullptr,
Data_Counter_Type Data_Counter_Type  data_ = nullptr 
+

Definition at line 343 of file model-meat.hpp.

+
@@ -587,18 +618,28 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- + - +
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_hasher void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_hasher (Hasher_fun_type< Array_Type, Data_Counter_Type > Hasher_fun_type< Array_Type, Data_Counter_Type >  fun_)
+ 		+inline
+

Definition at line 378 of file model-meat.hpp.

+
@@ -607,18 +648,28 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- + - +
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule (Rule< Array_Type, Data_Rule_Type > & Rule< Array_Type, Data_Rule_Type > &  rule)
+ 		+inline
+

Definition at line 389 of file model-meat.hpp.

+
@@ -630,15 +681,15 @@

void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule (Rule_fun_type< Array_Type, Data_Rule_Type > Rule_fun_type< Array_Type, Data_Rule_Type >  count_fun_,
Data_Rule_Type Data_Rule_Type  data_ 
+ + + + +
- +
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule_dyn void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule_dyn ( Rule< Array_Type, Data_Rule_Dyn_Type > &  rule)
+ 		+inline
+

Definition at line 417 of file model-meat.hpp.

+
@@ -677,10 +738,13 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + @@ -2037,7 +2346,7 @@

- + @@ -697,8 +761,15 @@

+inline +

+
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule_dyn void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule_dyn ( Rule_fun_type< Array_Type, Data_Rule_Dyn_Type >  count_fun_,
+

Definition at line 426 of file model-meat.hpp.

+
@@ -707,17 +778,24 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
std::vector< std::string > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::colnames () conststd::vector< std::string > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::colnames
+ 		+inline
+

Definition at line 1156 of file model-meat.hpp.

+
@@ -726,10 +804,13 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + @@ -2011,7 +2320,7 @@

- + @@ -758,6 +839,11 @@

+inline +

+
double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::conditional_prob double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::conditional_prob ( const Array_Type &  Array_,

Conditional probability ("Gibbs sampler")

@@ -773,6 +859,8 @@

Returns
double The conditional probability
+

Definition at line 1421 of file model-meat.hpp.

+

@@ -781,56 +869,80 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- +
std::vector< double > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::gen_key std::vector< double > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::gen_key ( const Array_Type &  Array_)
+ 		+inline
+

Definition at line 327 of file model-meat.hpp.

+
- -

◆ get_arrays2support()

+ +

◆ get_arrays2support()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
std::vector< size_t >* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_arrays2support ()std::vector< size_t > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_arrays2support
+ 		+inline
+

Definition at line 1492 of file model-meat.hpp.

+
- -

◆ get_counters()

+ +

◆ get_counters()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
Counters<Array_Type,Data_Counter_Type>* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_counters ()Counters< Array_Type, Data_Counter_Type > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_counters
+ 		+inline
+

Definition at line 1459 of file model-meat.hpp.

+
@@ -839,10 +951,13 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + @@ -1985,7 +2294,7 @@

- + @@ -865,236 +980,329 @@

+inline +

+
double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_norm_const double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_norm_const ( const std::vector< double > &  params,
+

Definition at line 946 of file model-meat.hpp.

+
- -

◆ get_pset()

+ +

◆ get_pset()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- +
const std::vector< Array_Type >* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_pset const std::vector< Array_Type > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_pset ( const size_t &  i)
+ 		+inline
+

Definition at line 983 of file model-meat.hpp.

+
- -

◆ get_pset_arrays()

+ +

◆ get_pset_arrays()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
std::vector< std::vector< Array_Type > >* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_pset_arrays ()std::vector< std::vector< Array_Type > > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_pset_arrays
+ 		+inline
+

Definition at line 1498 of file model-meat.hpp.

+
- -

◆ get_pset_probs()

+ +

◆ get_pset_probs()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
std::vector< std::vector<double> >* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_pset_probs ()std::vector< std::vector< double > > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_pset_probs
+ 		+inline
+

Definition at line 1508 of file model-meat.hpp.

+
- -

◆ get_pset_stats() [1/2]

+ +

◆ get_pset_stats() [1/2]

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
std::vector< std::vector<double> >* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_pset_stats ()std::vector< std::vector< double > > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_pset_stats
+ 		+inline

Statistics of the support(s)

+

Definition at line 1503 of file model-meat.hpp.

+
- -

◆ get_pset_stats() [2/2]

+ +

◆ get_pset_stats() [2/2]

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- +
const std::vector< double >* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_pset_stats const std::vector< double > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_pset_stats ( const size_t &  i)
+ 		+inline
+

Definition at line 996 of file model-meat.hpp.

+
- -

◆ get_rengine()

+ +

◆ get_rengine()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
const std::mt19937* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_rengine () constconst std::mt19937 * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_rengine
+ 		+inline
+

Definition at line 1454 of file model-meat.hpp.

+
- -

◆ get_rules()

+ +

◆ get_rules()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
Rules<Array_Type,Data_Rule_Type>* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_rules ()Rules< Array_Type, Data_Rule_Type > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_rules
+ 		+inline
+

Definition at line 1464 of file model-meat.hpp.

+
- -

◆ get_rules_dyn()

+ +

◆ get_rules_dyn()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
Rules<Array_Type,Data_Rule_Dyn_Type>* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_rules_dyn ()Rules< Array_Type, Data_Rule_Dyn_Type > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_rules_dyn
+ 		+inline
+

Definition at line 1469 of file model-meat.hpp.

+
- -

◆ get_stats_support()

+ +

◆ get_stats_support()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
std::vector< std::vector< double > >* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_stats_support ()std::vector< std::vector< double > > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_stats_support
+ 		+inline
+

Definition at line 1486 of file model-meat.hpp.

+
- -

◆ get_stats_target()

+ +

◆ get_stats_target()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
std::vector< std::vector< double > >* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_stats_target ()std::vector< std::vector< double > > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_stats_target
+ 		+inline

Raw pointers to the support and target statistics.

The support of the model is stored as a vector of vector<double>. Each element of it contains the support for an specific type of array included. It represents an array of size (k + 1) x n unique elements, with the data stored by-row. The last element of each entry corresponds to the weights, i.e., the frequency with which such sufficient statistics are observed in the support.

+

Definition at line 1480 of file model-meat.hpp.

+
- -

◆ get_support_fun()

+ +

◆ get_support_fun()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- - - - +
Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type>* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_support_fun ()Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > * Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_support_fun
+ 		+inline
+

Definition at line 1475 of file model-meat.hpp.

+
- -

◆ likelihood() [1/4]

+ +

◆ likelihood() [1/4]

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + @@ -1959,7 +2268,7 @@

- + @@ -1123,20 +1331,30 @@

+inline +

+
double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::likelihood double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::likelihood ( const std::vector< double > &  params,
+

Definition at line 643 of file model-meat.hpp.

+
- -

◆ likelihood() [2/4]

+ +

◆ likelihood() [2/4]

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + @@ -1933,7 +2242,7 @@

- + @@ -1165,20 +1383,30 @@

+inline +

+
double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::likelihood double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::likelihood ( const std::vector< double > &  params,
+

Definition at line 798 of file model-meat.hpp.

+
- -

◆ likelihood() [3/4]

+ +

◆ likelihood() [3/4]

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + @@ -1907,7 +2216,7 @@

- + @@ -1201,20 +1429,30 @@

+inline +

+
double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::likelihood double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::likelihood ( const std::vector< double > &  params,
+

Definition at line 594 of file model-meat.hpp.

+
- -

◆ likelihood() [4/4]

+ +

◆ likelihood() [4/4]

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + @@ -1881,7 +2190,7 @@

- + @@ -1243,20 +1481,30 @@

+inline +

+
double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::likelihood double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::likelihood ( const std::vector< double > &  params,
+

Definition at line 729 of file model-meat.hpp.

+
- -

◆ likelihood_total()

+ +

◆ likelihood_total()

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + @@ -1412,7 +1664,7 @@

Definition at line 980 of file model-meat.hpp.

+

Definition at line 1038 of file model-meat.hpp.

@@ -1422,18 +1674,28 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+

- + @@ -1273,8 +1521,15 @@

+inline +

+
double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::likelihood_total double Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::likelihood_total ( const std::vector< double > &  params,
+

Definition at line 874 of file model-meat.hpp.

+
@@ -1283,25 +1538,24 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+inlinenoexcept
- - - - +
size_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::nrules () constsize_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::nrules
-noexcept
+

Definition at line 1127 of file model-meat.hpp.

+
@@ -1310,25 +1564,24 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+inlinenoexcept
- - - - +
size_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::nrules_dyn () constsize_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::nrules_dyn
-noexcept
+

Definition at line 1135 of file model-meat.hpp.

+
@@ -1337,25 +1590,24 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+inlinenoexcept
- - - - +
size_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::nterms () constsize_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::nterms
-noexcept
+

Definition at line 1116 of file model-meat.hpp.

+
@@ -1370,9 +1622,9 @@

- + - + @@ -1384,7 +1636,7 @@

-

Definition at line 256 of file model-meat.hpp.

+

Definition at line 269 of file model-meat.hpp.

@@ -1400,7 +1652,7 @@

Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::operator= Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::operator= (const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &  Model_)
- +
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::printvoid Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::print

+ + + + +
- +
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::print_stats void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::print_stats ( size_t  i) const
+ 		+inline
+

Definition at line 1008 of file model-meat.hpp.

+
@@ -1442,10 +1704,13 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + @@ -1855,7 +2164,7 @@

- + @@ -1462,7 +1727,15 @@

+inline +

+
Array_Type Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::sample Array_Type Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::sample ( const Array_Type &  Array_,
+

When computing with the powerset, we need to grow the corresponding vectors on the fly

+ +

Definition at line 1252 of file model-meat.hpp.

@@ -1478,7 +1751,7 @@

- + @@ -1502,7 +1775,7 @@

-

Definition at line 1107 of file model-meat.hpp.

+

Definition at line 1172 of file model-meat.hpp.

@@ -1512,18 +1785,28 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+

Array_Type Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::sample Array_Type Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::sample ( const size_t &  i,
+ + + + +
- + - +
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_counters void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_counters (Counters< Array_Type, Data_Counter_Type > * Counters< Array_Type, Data_Counter_Type > *  counters_)
+ 		+inline
+

Definition at line 360 of file model-meat.hpp.

+
@@ -1538,7 +1821,7 @@

- + @@ -1572,18 +1855,28 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+

void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_rengine void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_rengine ( std::mt19937 *  rengine_,
+ + + + +
- + - +
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_rules void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_rules (Rules< Array_Type, Data_Rule_Type > * Rules< Array_Type, Data_Rule_Type > *  rules_)
+ 		+inline
+

Definition at line 399 of file model-meat.hpp.

+
@@ -1592,18 +1885,28 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+ + + + + +
- +
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_rules_dyn void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_rules_dyn ( Rules< Array_Type, Data_Rule_Dyn_Type > *  rules_)
+ 		+inline
+

Definition at line 441 of file model-meat.hpp.

+
@@ -1618,7 +1921,7 @@

- + @@ -1642,10 +1945,13 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+

void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_seed void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_seed ( size_t  s)
 + + - + @@ -1829,7 +2138,7 @@

- + @@ -1662,6 +1968,11 @@

+inline +

+
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_transform_model void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_transform_model ( std::function< std::vector< double >(double *, size_t)>  fun,

Set the transform_model_fun object.

@@ -1676,6 +1987,8 @@

Definition at line 1513 of file model-meat.hpp.

+

@@ -1684,25 +1997,24 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+inlinenoexcept
- - - - +
size_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::size () constsize_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::size
-noexcept
+

Definition at line 1099 of file model-meat.hpp.

+
@@ -1711,25 +2023,24 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+inlinenoexcept
- - - - +
size_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::size_unique () constsize_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::size_unique
-noexcept
+

Definition at line 1107 of file model-meat.hpp.

+
@@ -1738,25 +2049,24 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+inlinenoexcept
- - - - +
void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::store_psets ()void Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::store_psets
-noexcept
+

Definition at line 319 of file model-meat.hpp.

+
@@ -1765,25 +2075,24 @@

-template<typename Array_Type = BArray<>, typename Data_Counter_Type = bool, typename Data_Rule_Type = bool, typename Data_Rule_Dyn_Type = bool>
+template<typename Array_Type , typename Data_Counter_Type , typename Data_Rule_Type , typename Data_Rule_Dyn_Type >
+inlinenoexcept
- - - - +
size_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::support_size () constsize_t Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::support_size
-noexcept
+

Definition at line 1143 of file model-meat.hpp.

+
@@ -1795,7 +2104,7 @@

std::vector<double> Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::transform_model std::vector<double> Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::transform_model ( double *  data,
- +
std::vector< size_t > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::arrays2supportstd::vector< size_t > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::arrays2support

- +
StatsCounter<Array_Type,Data_Counter_Type> Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::counter_funStatsCounter<Array_Type,Data_Counter_Type> Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::counter_fun

- +
Counters<Array_Type,Data_Counter_Type>* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::countersCounters<Array_Type,Data_Counter_Type>* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::counters
- +
bool Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_counters = falsebool Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_counters = false
- +
bool Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_rengine = falsebool Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_rengine = false
- +
bool Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_rules = falsebool Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_rules = false
- +
bool Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_rules_dyn = falsebool Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_rules_dyn = false

- +
std::vector< bool > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::first_calc_donestd::vector< bool > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::first_calc_done

- +
MapVec_type< double, size_t > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::keys2supportMapVec_type< double, size_t > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::keys2support

- +
std::vector< double > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::normalizing_constantsstd::vector< double > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::normalizing_constants

- +
std::vector< std::vector<double> > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::params_laststd::vector< std::vector<double> > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::params_last
@@ -2120,7 +2429,7 @@

- +
std::vector< std::vector< Array_Type > > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::pset_arraysstd::vector< std::vector< Array_Type > > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::pset_arrays
@@ -2148,7 +2457,7 @@

- +
std::vector< std::vector<double> > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::pset_probsstd::vector< std::vector<double> > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::pset_probs
@@ -2176,7 +2485,7 @@

- +
std::vector< std::vector<double> > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::pset_statsstd::vector< std::vector<double> > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::pset_stats
@@ -2204,7 +2513,7 @@

- +
std::mt19937* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::rengine = nullptrstd::mt19937* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::rengine = nullptr
@@ -2230,7 +2539,7 @@

- +
Rules<Array_Type,Data_Rule_Type>* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::rulesRules<Array_Type,Data_Rule_Type>* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::rules
@@ -2256,7 +2565,7 @@

- +
Rules<Array_Type,Data_Rule_Dyn_Type>* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::rules_dynRules<Array_Type,Data_Rule_Dyn_Type>* Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::rules_dyn
@@ -2282,7 +2591,7 @@

- +
std::vector< std::vector< double > > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::stats_supportstd::vector< std::vector< double > > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::stats_support
@@ -2310,7 +2619,7 @@

- +
std::vector< size_t > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::stats_support_n_arraysstd::vector< size_t > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::stats_support_n_arrays
@@ -2338,7 +2647,7 @@

- +
std::vector< std::vector< double > > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::stats_targetstd::vector< std::vector< double > > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::stats_target
@@ -2366,7 +2675,7 @@

- +
Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::support_funSupport<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::support_fun
@@ -2392,7 +2701,7 @@

- +
std::function<std::vector<double>double *, size_t k)> Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::transform_model_fun = nullptrstd::function<std::vector<double>double *, size_t k)> Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::transform_model_fun = nullptr
@@ -2426,7 +2735,7 @@

- +
std::vector< std::string > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::transform_model_term_namesstd::vector< std::string > Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::transform_model_term_names
@@ -2452,7 +2761,7 @@

- +
bool Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::with_pset = falsebool Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::with_pset = false
@@ -2476,7 +2785,7 @@

  • Model
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_model.js b/class_model.js index 9c8b1f72e..d3d5b5634 100644 --- a/class_model.js +++ b/class_model.js @@ -15,25 +15,25 @@ var class_model = [ "colnames", "class_model.html#a61b7baf9d45f885832db74fb9cd99c4d", null ], [ "conditional_prob", "class_model.html#a3f13aa5080ce580a11892cf6a69fee64", null ], [ "gen_key", "class_model.html#a5ab59e34639b590094bc2716d056e78c", null ], - [ "get_arrays2support", "class_model.html#a6775390b015ca4a012dea92bcab562f3", null ], - [ "get_counters", "class_model.html#ab79035281970e647253bf5c26481e588", null ], + [ "get_arrays2support", "class_model.html#ab705e7531998b61c1358c6cbef773e0d", null ], + [ "get_counters", "class_model.html#a2345f3e51002d81bd60cb0b14f006dbd", null ], [ "get_norm_const", "class_model.html#af5a931e39999583e4fe39ebc6db63a26", null ], - [ "get_pset", "class_model.html#a060a8f1c30146e6363c480ffb2fed1bd", null ], - [ "get_pset_arrays", "class_model.html#a43d3242876ee289ecd4e92d8a953cacb", null ], - [ "get_pset_probs", "class_model.html#a38a7545244ac95aa624496dbf1d71120", null ], - [ "get_pset_stats", "class_model.html#aa22bb94f9de4c87671580d67e8ae66df", null ], - [ "get_pset_stats", "class_model.html#ae21259571924ce4abbd3e2f5283cf939", null ], - [ "get_rengine", "class_model.html#ab98a5c50c97fca438b0dc959fe9d5448", null ], - [ "get_rules", "class_model.html#a4c9d8b857f82d69275f120f2461072b8", null ], - [ "get_rules_dyn", "class_model.html#aff4a65facf467f1857160abc9cb720f2", null ], - [ "get_stats_support", "class_model.html#ae32b03e221b22c30eff464dc75787061", null ], - [ "get_stats_target", "class_model.html#a6eacbc0a8bb76ae183ec9cc112767dd6", null ], - [ "get_support_fun", "class_model.html#a0a5e28f9d316bbc914a6d8f24071f8c1", null ], - [ "likelihood", "class_model.html#a42cc1109ccaf9b016a1c1787cd356c0b", null ], - [ "likelihood", "class_model.html#a778f76803109eec3d229ea7333a25c9d", null ], - [ "likelihood", "class_model.html#ad20729924815b8f554a6777261b053f8", null ], - [ "likelihood", "class_model.html#aca89061a811d102768b21455a82daefe", null ], - [ "likelihood_total", "class_model.html#a849c382c401986612056d6fdf043deb4", null ], + [ "get_pset", "class_model.html#aefb5399f2e396d34eb523e00c7d89140", null ], + [ "get_pset_arrays", "class_model.html#a567fbbecd8a77f62ada9535f1e56588f", null ], + [ "get_pset_probs", "class_model.html#a248d9516ebc938e2ab5df4f4f9d78121", null ], + [ "get_pset_stats", "class_model.html#a453d05dbfcef337c385afc7f2000d56b", null ], + [ "get_pset_stats", "class_model.html#ab19a8398b4f3fb8a21f8ed89aec2fbf7", null ], + [ "get_rengine", "class_model.html#a02cac4f649946705bfb4d69bc3a3576f", null ], + [ "get_rules", "class_model.html#a8796a5e54c0ba505129db2bc1e452d0d", null ], + [ "get_rules_dyn", "class_model.html#aff4c85b28ba08c67b6d3308cf94fc30a", null ], + [ "get_stats_support", "class_model.html#a35e9c4103deb9e2deda35c2c61b30289", null ], + [ "get_stats_target", "class_model.html#a5414f4d58c598c844bf0e7885e06488a", null ], + [ "get_support_fun", "class_model.html#a5a887a9d87a1f86ccc783fd27a0a1ddc", null ], + [ "likelihood", "class_model.html#ad1eb14faf48bf21732956f3ff27813b2", null ], + [ "likelihood", "class_model.html#ab32cd7afb0aceba4517db6f3f666ef9f", null ], + [ "likelihood", "class_model.html#a58131c38f2fa6820d513f6b145bc2589", null ], + [ "likelihood", "class_model.html#a5838b135cd9bf4b9609aaf2e015da1e8", null ], + [ "likelihood_total", "class_model.html#a42aee976ba5f79051e77798cefa7cda1", null ], [ "nrules", "class_model.html#a6a1213e74dd4d7ce7b0071a664b6f3b3", null ], [ "nrules_dyn", "class_model.html#a9a9ea5238be86c147f9ec264eb51b984", null ], [ "nterms", "class_model.html#a79ebbea31dc3742c37eba173c25acd5d", null ], diff --git a/class_net_counter_data-members.html b/class_net_counter_data-members.html index 4c5a7e80d..d6483b0f4 100644 --- a/class_net_counter_data-members.html +++ b/class_net_counter_data-members.html @@ -109,7 +109,7 @@ diff --git a/class_net_counter_data.html b/class_net_counter_data.html index eee7ac6ef..9aa575b54 100644 --- a/class_net_counter_data.html +++ b/class_net_counter_data.html @@ -261,7 +261,7 @@

  • NetCounterData
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_network_data-members.html b/class_network_data-members.html index ed3f714cb..e31f1b434 100644 --- a/class_network_data-members.html +++ b/class_network_data-members.html @@ -110,7 +110,7 @@ diff --git a/class_network_data.html b/class_network_data.html index 901fe4dfe..4e002ae65 100644 --- a/class_network_data.html +++ b/class_network_data.html @@ -323,7 +323,7 @@

  • NetworkData
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_node-members.html b/class_node-members.html index 6a3b2174f..4a804865e 100644 --- a/class_node-members.html +++ b/class_node-members.html @@ -125,7 +125,7 @@ diff --git a/class_node.html b/class_node.html index 827d37c80..87af9bdd0 100644 --- a/class_node.html +++ b/class_node.html @@ -687,7 +687,7 @@

  • Node
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_node_data-members.html b/class_node_data-members.html index 830f56d8d..f939084a8 100644 --- a/class_node_data-members.html +++ b/class_node_data-members.html @@ -108,7 +108,7 @@ diff --git a/class_node_data.html b/class_node_data.html index 6140255bc..582895e22 100644 --- a/class_node_data.html +++ b/class_node_data.html @@ -230,7 +230,7 @@

  • NodeData
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_phylo_counter_data-members.html b/class_phylo_counter_data-members.html index 61730a05a..4688e6f87 100644 --- a/class_phylo_counter_data-members.html +++ b/class_phylo_counter_data-members.html @@ -117,7 +117,7 @@ diff --git a/class_phylo_counter_data.html b/class_phylo_counter_data.html index 1b452b522..4be04debb 100644 --- a/class_phylo_counter_data.html +++ b/class_phylo_counter_data.html @@ -104,7 +104,7 @@ - + @@ -512,7 +512,7 @@

  • PhyloCounterData
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_phylo_rule_dyn_data-members.html b/class_phylo_rule_dyn_data-members.html index 12e109a89..3192755f3 100644 --- a/class_phylo_rule_dyn_data-members.html +++ b/class_phylo_rule_dyn_data-members.html @@ -112,7 +112,7 @@ diff --git a/class_phylo_rule_dyn_data.html b/class_phylo_rule_dyn_data.html index 9de777d98..d0da4ee4d 100644 --- a/class_phylo_rule_dyn_data.html +++ b/class_phylo_rule_dyn_data.html @@ -330,7 +330,7 @@

  • PhyloRuleDynData
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_power_set-members.html b/class_power_set-members.html index 120b8e9b7..459a56545 100644 --- a/class_power_set-members.html +++ b/class_power_set-members.html @@ -129,7 +129,7 @@ diff --git a/class_power_set.html b/class_power_set.html index 66a8205bc..5a9c403b5 100644 --- a/class_power_set.html +++ b/class_power_set.html @@ -135,9 +135,9 @@

- + - + @@ -150,7 +150,7 @@ - +

Public Member Functions

 PhyloCounterData (std::vector< size_t > data_, std::vector< double > *counters_=nullptr)
 PhyloCounterData (std::vector< size_t > data_, std::vector< double > *counters_=nullptr)
 
 PhyloCounterData ()
 
Wrappers for the <tt>Rules</tt> member.

These will add rules to the model, which are shared by the support and the actual counter function.

void add_rule (Rule< Array_Type, Data_Rule_Type > rule)
void add_rule (Rule< Array_Type, Data_Rule_Type > rule)
 
void add_rule (Rule_fun_type< Array_Type, Data_Rule_Type > count_fun_, Data_Rule_Type data_)
void add_rule (Rule_fun_type< Array_Type, Data_Rule_Type > count_fun_, Data_Rule_Type data_)
 
Getter functions
const std::vector< Array_Type > * get_data_ptr () const
 
std::size_t size () const noexcept
 
const Array_Type & operator[] (const size_t &i) const
const Array_Type & operator[] (const size_t &i) const
 
- + @@ -203,7 +203,7 @@

@@ -159,7 +159,7 @@

 
std::vector< Array_Type > data
 
Rules< Array_Type, Data_Rule_Type > * rules
Rules< Array_Type, Data_Rule_Type > * rules
 
size_t N
 
- + @@ -232,7 +232,7 @@

PowerSet< Array_Type, Data_Rule_Type >::PowerSet PowerSet< Array_Type, Data_Rule_Type >::PowerSet ( )
- + @@ -272,7 +272,7 @@

PowerSet< Array_Type, Data_Rule_Type >::PowerSet PowerSet< Array_Type, Data_Rule_Type >::PowerSet ( size_t  N_,
- + @@ -302,7 +302,7 @@

PowerSet< Array_Type, Data_Rule_Type >::PowerSet PowerSet< Array_Type, Data_Rule_Type >::PowerSet ( const Array_Type &  array)
- +
PowerSet< Array_Type, Data_Rule_Type >::~PowerSetPowerSet< Array_Type, Data_Rule_Type >::~PowerSet
@@ -329,9 +329,9 @@

- + - + @@ -359,15 +359,15 @@

void PowerSet< Array_Type, Data_Rule_Type >::add_rule void PowerSet< Array_Type, Data_Rule_Type >::add_rule (Rule< Array_Type, Data_Rule_Type > Rule< Array_Type, Data_Rule_Type >  rule)
- + - + - + @@ -399,7 +399,7 @@

void PowerSet< Array_Type, Data_Rule_Type >::add_rule void PowerSet< Array_Type, Data_Rule_Type >::add_rule (Rule_fun_type< Array_Type, Data_Rule_Type > Rule_fun_type< Array_Type, Data_Rule_Type >  count_fun_,
Data_Rule_Type Data_Rule_Type  data_ 
- + @@ -428,7 +428,7 @@

std::vector< Array_Type >::iterator PowerSet< Array_Type, Data_Rule_Type >::begin std::vector< Array_Type >::iterator PowerSet< Array_Type, Data_Rule_Type >::begin ( )
- +
void PowerSet< Array_Type, Data_Rule_Type >::calcvoid PowerSet< Array_Type, Data_Rule_Type >::calc
@@ -454,7 +454,7 @@

- + @@ -483,7 +483,7 @@

std::vector< Array_Type >::iterator PowerSet< Array_Type, Data_Rule_Type >::end std::vector< Array_Type >::iterator PowerSet< Array_Type, Data_Rule_Type >::end ( )
- + @@ -512,7 +512,7 @@

std::vector< Array_Type > PowerSet< Array_Type, Data_Rule_Type >::get_data std::vector< Array_Type > PowerSet< Array_Type, Data_Rule_Type >::get_data ( ) const
- + @@ -541,7 +541,7 @@

const std::vector< Array_Type >* PowerSet< Array_Type, Data_Rule_Type >::get_data_ptr const std::vector< Array_Type >* PowerSet< Array_Type, Data_Rule_Type >::get_data_ptr ( ) const
- +
void PowerSet< Array_Type, Data_Rule_Type >::init_supportvoid PowerSet< Array_Type, Data_Rule_Type >::init_support
@@ -567,7 +567,7 @@

- + @@ -597,7 +597,7 @@

const Array_Type& PowerSet< Array_Type, Data_Rule_Type >::operator[] const Array_Type& PowerSet< Array_Type, Data_Rule_Type >::operator[] ( const size_t &  i)
 - + @@ -637,7 +637,7 @@

void PowerSet< Array_Type, Data_Rule_Type >::reset void PowerSet< Array_Type, Data_Rule_Type >::reset ( size_t  N_,
- + @@ -664,7 +664,7 @@

- +
std::size_t PowerSet< Array_Type, Data_Rule_Type >::size std::size_t PowerSet< Array_Type, Data_Rule_Type >::size ( ) const
std::vector< size_t > PowerSet< Array_Type, Data_Rule_Type >::coordinates_freestd::vector< size_t > PowerSet< Array_Type, Data_Rule_Type >::coordinates_free
@@ -682,7 +682,7 @@

- std::vector< size_t > PowerSet< Array_Type, Data_Rule_Type >::coordinates_locked + std::vector< size_t > PowerSet< Array_Type, Data_Rule_Type >::coordinates_locked

@@ -700,7 +700,7 @@

- std::vector< Array_Type > PowerSet< Array_Type, Data_Rule_Type >::data + std::vector< Array_Type > PowerSet< Array_Type, Data_Rule_Type >::data

@@ -718,7 +718,7 @@

- Array_Type PowerSet< Array_Type, Data_Rule_Type >::EmptyArray + Array_Type PowerSet< Array_Type, Data_Rule_Type >::EmptyArray

@@ -736,7 +736,7 @@

- size_t PowerSet< Array_Type, Data_Rule_Type >::M + size_t PowerSet< Array_Type, Data_Rule_Type >::M

@@ -754,7 +754,7 @@

- size_t PowerSet< Array_Type, Data_Rule_Type >::N + size_t PowerSet< Array_Type, Data_Rule_Type >::N

@@ -772,7 +772,7 @@

- size_t PowerSet< Array_Type, Data_Rule_Type >::n_free + size_t PowerSet< Array_Type, Data_Rule_Type >::n_free

@@ -790,7 +790,7 @@

- size_t PowerSet< Array_Type, Data_Rule_Type >::n_locked + size_t PowerSet< Array_Type, Data_Rule_Type >::n_locked

@@ -808,7 +808,7 @@

- Rules<Array_Type,Data_Rule_Type>* PowerSet< Array_Type, Data_Rule_Type >::rules + Rules<Array_Type,Data_Rule_Type>* PowerSet< Array_Type, Data_Rule_Type >::rules

@@ -826,7 +826,7 @@

- bool PowerSet< Array_Type, Data_Rule_Type >::rules_deleted = false + bool PowerSet< Array_Type, Data_Rule_Type >::rules_deleted = false

@@ -845,7 +845,7 @@

  • PowerSet
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/class_progress-members.html b/class_progress-members.html index 5f197a70e..6fe02d610 100644 --- a/class_progress-members.html +++ b/class_progress-members.html @@ -108,7 +108,7 @@ diff --git a/class_progress.html b/class_progress.html index 3552ef17a..6507e1525 100644 --- a/class_progress.html +++ b/class_progress.html @@ -250,7 +250,7 @@

  • Progress
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_rule-members.html b/class_rule-members.html index b33c5698f..e62e904ae 100644 --- a/class_rule-members.html +++ b/class_rule-members.html @@ -113,7 +113,7 @@ diff --git a/class_rule.html b/class_rule.html index 19ad99a68..745b37d30 100644 --- a/class_rule.html +++ b/class_rule.html @@ -112,7 +112,7 @@ Data_Type & D ()  Read/Write access to the data. More...
  -bool operator() (const Array_Type &a, size_t i, size_t j) +bool operator() (const Array_Type &a, size_t i, size_t j)   std::string & get_name ()   @@ -135,7 +135,7 @@  Rule ()   - Rule (Rule_fun_type< Array_Type, Data_Type > fun_, Data_Type dat_, std::string name_="", std::string desc_="") + Rule (Rule_fun_type< Array_Type, Data_Type > fun_, Data_Type dat_, std::string name_="", std::string desc_="")  

Detailed Description

@@ -452,7 +452,7 @@

  • Rule
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_rules-members.html b/class_rules-members.html index 76cbd96e2..feb8a40b0 100644 --- a/class_rules-members.html +++ b/class_rules-members.html @@ -117,7 +117,7 @@ diff --git a/class_rules.html b/class_rules.html index de8bd6461..b1ce28962 100644 --- a/class_rules.html +++ b/class_rules.html @@ -109,18 +109,18 @@ Public Member Functions

 Rules ()   - Rules (const Rules< Array_Type, Data_Type > &rules_) + Rules (const Rules< Array_Type, Data_Type > &rules_)   -Rules< Array_Type, Data_Type > operator= (const Rules< Array_Type, Data_Type > &rules_) +Rules< Array_Type, Data_Type > operator= (const Rules< Array_Type, Data_Type > &rules_)    ~Rules ()   size_t size () const noexcept   -bool operator() (const Array_Type &a, size_t i, size_t j) +bool operator() (const Array_Type &a, size_t i, size_t j)  Check whether a given cell is free or locked. More...
  -void get_seq (const Array_Type &a, std::vector< size_t > *free, std::vector< size_t > *locked=nullptr) +void get_seq (const Array_Type &a, std::vector< size_t > *free, std::vector< size_t > *locked=nullptr)  Computes the sequence of free and locked cells in an BArray. More...
  std::vector< std::string > get_names () const @@ -141,7 +141,7 @@ void add_rule (Rule< Array_Type, Data_Type > rule)   -void add_rule (Rule_fun_type< Array_Type, Data_Type > rule_, Data_Type data_, std::string name_="", std::string description_="") +void add_rule (Rule_fun_type< Array_Type, Data_Type > rule_, Data_Type data_, std::string name_="", std::string description_="")  

Detailed Description

@@ -617,7 +617,7 @@

  • Rules
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_stats_counter-members.html b/class_stats_counter-members.html index 8dbe1b4b5..112f2d790 100644 --- a/class_stats_counter-members.html +++ b/class_stats_counter-members.html @@ -118,7 +118,7 @@ diff --git a/class_stats_counter.html b/class_stats_counter.html index 7d3f43b5b..645fbcd81 100644 --- a/class_stats_counter.html +++ b/class_stats_counter.html @@ -125,10 +125,10 @@   void set_counters (Counters< Array_Type, Data_Type > *counters_)   -void count_init (size_t i, size_t j) +void count_init (size_t i, size_t j)  Counter functions This function recurses through the entries of Array and at each step of adding a new cell it uses the functions to list the statistics. More...
  -void count_current (size_t i, size_t j) +void count_current (size_t i, size_t j)   std::vector< double > count_all ()   @@ -519,7 +519,7 @@

  • StatsCounter
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/class_support-members.html b/class_support-members.html index 79ef0179b..e964b4023 100644 --- a/class_support-members.html +++ b/class_support-members.html @@ -143,7 +143,7 @@ diff --git a/class_support.html b/class_support.html index 6769da8c3..3a30007e3 100644 --- a/class_support.html +++ b/class_support.html @@ -132,10 +132,10 @@   const FreqTable< double > & get_data () const   -Counters< Array_Type, Data_Counter_Type > * get_counters () +Counters< Array_Type, Data_Counter_Type > * get_counters ()  Vector of couter functions. More...
  -Rules< Array_Type, Data_Rule_Type > * get_rules () +Rules< Array_Type, Data_Rule_Type > * get_rules ()  Vector of static rules (cells to iterate). More...
  Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn () @@ -163,9 +163,9 @@ -void add_counter (Counter< Array_Type, Data_Counter_Type > f_) +void add_counter (Counter< Array_Type, Data_Counter_Type > f_)   -void set_counters (Counters< Array_Type, Data_Counter_Type > *counters_) +void set_counters (Counters< Array_Type, Data_Counter_Type > *counters_)  
Manage rules
Parameters
@@ -176,19 +176,19 @@
-void add_rule (Rule< Array_Type, Data_Rule_Type > *f_) +void add_rule (Rule< Array_Type, Data_Rule_Type > *f_)   -void add_rule (Rule< Array_Type, Data_Rule_Type > f_) +void add_rule (Rule< Array_Type, Data_Rule_Type > f_)   -void set_rules (Rules< Array_Type, Data_Rule_Type > *rules_) +void set_rules (Rules< Array_Type, Data_Rule_Type > *rules_)   void add_rule_dyn (Rule< Array_Type, Data_Rule_Dyn_Type > *f_)   void add_rule_dyn (Rule< Array_Type, Data_Rule_Dyn_Type > f_)   -void set_rules_dyn (Rules< Array_Type, Data_Rule_Dyn_Type > *rules_) +void set_rules_dyn (Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)   -bool eval_rules_dyn (const std::vector< double > &counts, const size_t &i, const size_t &j) +bool eval_rules_dyn (const std::vector< double > &counts, const size_t &i, const size_t &j)   @@ -660,7 +660,7 @@

@@ -247,7 +247,7 @@

- + @@ -279,7 +279,7 @@

Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Support Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Support ( const Array_Type &  Array_)
 - + @@ -321,7 +321,7 @@

Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Support Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Support ( size_t  N_,
- + @@ -350,7 +350,7 @@

Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Support Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::Support ( )
- + @@ -380,9 +380,9 @@

Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::~Support Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::~Support ( )
- + - + @@ -410,9 +410,9 @@

void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_counter void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_counter (Counter< Array_Type, Data_Counter_Type > Counter< Array_Type, Data_Counter_Type >  f_)
- + - + @@ -440,9 +440,9 @@

void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule (Rule< Array_Type, Data_Rule_Type > * Rule< Array_Type, Data_Rule_Type > *  f_)
- + - + @@ -470,7 +470,7 @@

void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule (Rule< Array_Type, Data_Rule_Type > Rule< Array_Type, Data_Rule_Type >  f_)
- + @@ -500,7 +500,7 @@

void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule_dyn void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule_dyn ( Rule< Array_Type, Data_Rule_Dyn_Type > *  f_)
- + @@ -530,7 +530,7 @@

void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule_dyn void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::add_rule_dyn ( Rule< Array_Type, Data_Rule_Dyn_Type >  f_)
- + @@ -586,7 +586,7 @@

void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::calc void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::calc ( std::vector< Array_Type > *  array_bank = nullptr,
- + @@ -632,7 +632,7 @@

bool Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::eval_rules_dyn bool Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::eval_rules_dyn ( const std::vector< double > &  counts,
- +
Counters< Array_Type, Data_Counter_Type > * Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_countersCounters< Array_Type, Data_Counter_Type > * Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_counters

- +
std::vector< double > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_countsstd::vector< double > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_counts
@@ -686,7 +686,7 @@

- +
std::vector< double > * Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_current_statsstd::vector< double > * Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_current_stats
@@ -714,7 +714,7 @@

- +
const FreqTable< double > & Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_dataconst FreqTable< double > & Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_data
@@ -740,7 +740,7 @@

- +
Rules< Array_Type, Data_Rule_Type > * Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_rulesRules< Array_Type, Data_Rule_Type > * Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_rules
@@ -768,7 +768,7 @@

- +
Rules< Array_Type, Data_Rule_Dyn_Type > * Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_rules_dynRules< Array_Type, Data_Rule_Dyn_Type > * Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::get_rules_dyn
@@ -796,7 +796,7 @@

- + @@ -836,7 +836,7 @@

void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::init_support void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::init_support ( std::vector< Array_Type > *  array_bank = nullptr,
- +
void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::printvoid Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::print
@@ -862,7 +862,7 @@

- +
void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::reset_arrayvoid Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::reset_array
@@ -888,7 +888,7 @@

- + @@ -918,9 +918,9 @@

void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::reset_array void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::reset_array ( const Array_Type &  Array_)
 - + - + @@ -948,9 +948,9 @@

void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_counters void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_counters (Counters< Array_Type, Data_Counter_Type > * Counters< Array_Type, Data_Counter_Type > *  counters_)
- + - + @@ -978,7 +978,7 @@

void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_rules void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_rules (Rules< Array_Type, Data_Rule_Type > * Rules< Array_Type, Data_Rule_Type > *  rules_)
- + @@ -1006,7 +1006,7 @@

- +
void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_rules_dyn void Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::set_rules_dyn ( Rules< Array_Type, Data_Rule_Dyn_Type > *  rules_)
std::vector< double > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::change_statsstd::vector< double > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::change_stats
@@ -1024,7 +1024,7 @@

- size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::coordiantes_n_free + size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::coordiantes_n_free

@@ -1042,7 +1042,7 @@

- size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::coordiantes_n_locked + size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::coordiantes_n_locked

@@ -1060,7 +1060,7 @@

- std::vector< size_t > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::coordinates_free + std::vector< size_t > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::coordinates_free

@@ -1078,7 +1078,7 @@

- std::vector< size_t > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::coordinates_locked + std::vector< size_t > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::coordinates_locked

@@ -1096,7 +1096,7 @@

- std::vector< double > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::current_stats + std::vector< double > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::current_stats

@@ -1114,7 +1114,7 @@

- bool Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_counters = true + bool Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_counters = true

@@ -1132,7 +1132,7 @@

- bool Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_rules = true + bool Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_rules = true

@@ -1150,7 +1150,7 @@

- bool Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_rules_dyn = true + bool Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::delete_rules_dyn = true

@@ -1168,7 +1168,7 @@

- std::vector< size_t > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::hashes + std::vector< size_t > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::hashes

@@ -1186,7 +1186,7 @@

- std::vector< bool > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::hashes_initialized + std::vector< bool > Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::hashes_initialized

@@ -1204,7 +1204,7 @@

- size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::M + size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::M

@@ -1222,7 +1222,7 @@

- size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::max_num_elements = BARRY_MAX_NUM_ELEMENTS + size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::max_num_elements = BARRY_MAX_NUM_ELEMENTS

@@ -1240,7 +1240,7 @@

- size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::N + size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::N

@@ -1258,7 +1258,7 @@

- size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::n_counters + size_t Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type >::n_counters

@@ -1277,7 +1277,7 @@

  • Support
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/classes.html b/classes.html index 813db6e68..818b76534 100644 --- a/classes.html +++ b/classes.html @@ -140,7 +140,7 @@ diff --git a/col-bones_8hpp.html b/col-bones_8hpp.html index f7d226bf0..b4fed667f 100644 --- a/col-bones_8hpp.html +++ b/col-bones_8hpp.html @@ -104,7 +104,7 @@ diff --git a/col-bones_8hpp_source.html b/col-bones_8hpp_source.html index dfb677b0e..3a8bd51cd 100644 --- a/col-bones_8hpp_source.html +++ b/col-bones_8hpp_source.html @@ -159,7 +159,7 @@ diff --git a/counters-bones_8hpp.html b/counters-bones_8hpp.html index d62fe4121..b94eba140 100644 --- a/counters-bones_8hpp.html +++ b/counters-bones_8hpp.html @@ -125,7 +125,7 @@ diff --git a/counters-bones_8hpp_source.html b/counters-bones_8hpp_source.html index cf95ce8f0..f5a1bd9ab 100644 --- a/counters-bones_8hpp_source.html +++ b/counters-bones_8hpp_source.html @@ -117,10 +117,10 @@
60  Counter_fun_type<Array_Type,Data_Type> count_fun_,
61  Counter_fun_type<Array_Type,Data_Type> init_fun_,
62  Hasher_fun_type<Array_Type,Data_Type> hasher_fun_,
-
63  Data_Type data_,
+
63  Data_Type data_,
64  std::string name_ = "",
65  std::string desc_ = ""
-
66  ): count_fun(count_fun_), init_fun(init_fun_), hasher_fun(hasher_fun_), data(data_),
+
66  ): count_fun(count_fun_), init_fun(init_fun_), hasher_fun(hasher_fun_), data(data_),
67  name(name_), desc(desc_) {};
68 
69  Counter(const Counter<Array_Type,Data_Type> & counter_);
@@ -133,8 +133,8 @@
77  /***
78  * ! Main functions.
79  */
-
80  double count(Array_Type & Array, size_t i, size_t j);
-
81  double init(Array_Type & Array, size_t i, size_t j);
+
80  double count(Array_Type & Array, size_t i, size_t j);
+
81  double init(Array_Type & Array, size_t i, size_t j);
82  std::string get_name() const;
83  std::string get_description() const;
84 
@@ -160,7 +160,7 @@
121 
126  Counters(const Counters<Array_Type,Data_Type> & counter_);
127 
-
133  Counters(Counters<Array_Type,Data_Type> && counters_) noexcept;
+
133  Counters(Counters<Array_Type,Data_Type> && counters_) noexcept;
134 
141  Counters<Array_Type,Data_Type> operator=(const Counters<Array_Type,Data_Type> & counter_);
142 
@@ -178,7 +178,7 @@
171  Counter_fun_type<Array_Type,Data_Type> count_fun_,
172  Counter_fun_type<Array_Type,Data_Type> init_fun_,
173  Hasher_fun_type<Array_Type,Data_Type> hasher_fun_,
-
174  Data_Type data_,
+
174  Data_Type data_,
175  std::string name_ = "",
176  std::string desc_ = ""
177  );
@@ -242,14 +242,14 @@
fun_
Data_Type fun_
Definition: counters-meat.hpp:271
hasher_fun_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > hasher_fun_
Definition: counters-meat.hpp:181
desc_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string std::string desc_
Definition: counters-meat.hpp:186
-
i
size_t i
Definition: counters-meat.hpp:83
name_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string name_
Definition: counters-meat.hpp:183
j
size_t size_t j
Definition: counters-meat.hpp:84
add_dims
bool add_dims
Definition: counters-meat.hpp:229
counter
Data_Type counter
Definition: counters-meat.hpp:171
-
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
-
counters_
Data_Counter_Type * counters_
Definition: model-meat.hpp:344
+
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
+
counters_
Data_Type * counters_
Definition: statscounter-meat.hpp:54
Hasher_fun_type
std::function< std::vector< double >(const Array_Type &, Data_Type *)> Hasher_fun_type
Hasher function used by the counter.
Definition: typedefs.hpp:200
Counter_fun_type
std::function< double(const Array_Type &, size_t, size_t, Data_Type &)> Counter_fun_type
Counter and rule functions.
Definition: typedefs.hpp:187
@@ -258,7 +258,7 @@ diff --git a/counters-meat_8hpp.html b/counters-meat_8hpp.html index 6dd7bd253..79b467a62 100644 --- a/counters-meat_8hpp.html +++ b/counters-meat_8hpp.html @@ -118,7 +118,7 @@   #define COUNTER_TEMPLATE_ARGS()   <typename Array_Type, typename Data_Type>   -#define COUNTER_TEMPLATE(a, b)    template COUNTER_TEMPLATE_ARGS() inline a COUNTER_TYPE()::b +#define COUNTER_TEMPLATE(a, b)    template COUNTER_TEMPLATE_ARGS() inline a COUNTER_TYPE()::b   #define TMP_HASHER_CALL   Hasher_fun_type<Array_Type,Data_Type>   @@ -126,7 +126,7 @@   #define COUNTERS_TEMPLATE_ARGS()   <typename Array_Type, typename Data_Type>   -#define COUNTERS_TEMPLATE(a, b)    template COUNTERS_TEMPLATE_ARGS() inline a COUNTERS_TYPE()::b +#define COUNTERS_TEMPLATE(a, b)    template COUNTERS_TEMPLATE_ARGS() inline a COUNTERS_TYPE()::b   - + - + @@ -195,7 +195,7 @@ - + @@ -206,8 +206,8 @@ - - + + @@ -222,15 +222,15 @@ - - + + - + @@ -246,7 +246,7 @@

#define COUNTER_TEMPLATE

- + @@ -257,7 +257,7 @@

COUNTER_TEMPLATE_ARGS() inline a COUNTER_TYPE()::b +

@@ -155,11 +155,11 @@

 COUNTER_TEMPLATE (double, count)(Array_Type &Array
 < Move assignment More...
 
return count_fun (Array, i, j, data)
return count_fun (Array, i, j, data)
 
 COUNTER_TEMPLATE (double, init)(Array_Type &Array
 
return init_fun (Array, i, j, data)
return init_fun (Array, i, j, data)
 
 COUNTER_TEMPLATE (std::string, get_name)() const
 
 
 if (hasher)
 
 if (res.size()==0u) res.push_back(0.0)
 if (res.size()==0u) res.push_back(0.0)
 
 COUNTERS_TEMPLATE (void, add_hash)(Hasher_fun_type< Array_Type
 
 
Data_Type &&counter_ noexcept
 
size_t i = locator->second
 
size_t i
 
size_t size_t j
 
Data_Type fun
 
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > hasher_fun_
 
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
 
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
 
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string name_
 
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string std::string desc_
 
bool add_dims
 
return res
return res
 
Data_Type fun_
 
(  a, a,
    template COUNTER_TEMPLATE_ARGS() inline a COUNTER_TYPE()::b
@@ -314,7 +314,7 @@

#define COUNTERS_TEMPLATE (   - a, + a, @@ -325,7 +325,7 @@

COUNTERS_TEMPLATE_ARGS() inline a COUNTERS_TYPE()::b +     template COUNTERS_TEMPLATE_ARGS() inline a COUNTERS_TYPE()::b

@@ -396,7 +396,7 @@

- + @@ -404,7 +404,7 @@

- + @@ -1132,7 +1132,7 @@

return count_fun return count_fun ( Array  , i i  ,
- + @@ -1140,7 +1140,7 @@

- + @@ -1314,27 +1314,18 @@

-

◆ data_

+ +

◆ data_

return init_fun return init_fun ( Array  , i i  ,
- +
Data_Rule_Dyn_Type Data_Rule_Dyn_Type data_Data_Type Counter_fun_type<Array_Type,Data_Type> Hasher_fun_type<Array_Type,Data_Type> Data_Type data_

-Initial value:
{
-
-
rules_dyn->add_rule(
-
rule_fun_,
-
data_
-
)
-
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
-
rules_dyn
this rules_dyn
Definition: model-meat.hpp:424
-
rule_fun_
Data_Rule_Dyn_Type rule_fun_
Definition: model-meat.hpp:404
-
+

Definition at line 182 of file counters-meat.hpp.

@@ -1356,7 +1347,7 @@

count_fun_,
init_fun_,
hasher_fun_,
-
data_,
+
data_,
name_,
desc_
))
@@ -1366,6 +1357,7 @@

hasher_fun_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > hasher_fun_
Definition: counters-meat.hpp:181
desc_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string std::string desc_
Definition: counters-meat.hpp:186
name_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string name_
Definition: counters-meat.hpp:183
+
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182

Definition at line 184 of file counters-meat.hpp.

@@ -1427,14 +1419,14 @@

-

◆ i

+ +

◆ i

- +
const std::vector< double > size_t i = locator->secondsize_t i
@@ -1537,7 +1529,7 @@

- +
return resreturn res

@@ -1568,7 +1560,7 @@

  • include
  • barry
  • counters-meat.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/counters-meat_8hpp.js b/counters-meat_8hpp.js index c4ffa1e05..3ef314955 100644 --- a/counters-meat_8hpp.js +++ b/counters-meat_8hpp.js @@ -44,12 +44,12 @@ var counters_meat_8hpp = [ "count_fun_", "counters-meat_8hpp.html#a4c3b0c42e7e960fe3d847ee31a0adc7c", null ], [ "counter", "counters-meat_8hpp.html#ada63845ba43e9bf4e10e4afba28e0915", null ], [ "counter_", "counters-meat_8hpp.html#a3119b2fa04b5a2a25b36f78264fdf274", null ], - [ "data_", "counters-meat_8hpp.html#add877eae455a35aea9e5c7de9c6f2dbb", null ], + [ "data_", "counters-meat_8hpp.html#af17c9c018d7997cb11aef6a4da2969a7", null ], [ "desc_", "counters-meat_8hpp.html#a85048b7e05646aea9e927425a9dc2656", null ], [ "fun", "counters-meat_8hpp.html#a43a4f45722a62357bc53b2abaaeb999f", null ], [ "fun_", "counters-meat_8hpp.html#a7b9c38a045f3121f0a943d5b980ec17f", null ], [ "hasher_fun_", "counters-meat_8hpp.html#a7c4ea5d2468020b3872c9c6a4c3b0442", null ], - [ "i", "counters-meat_8hpp.html#a981162f997bbddbdcaf8234da58a6094", null ], + [ "i", "counters-meat_8hpp.html#ae46bd26d7133dfe98f8cec7c5ac5c7a1", null ], [ "init_fun_", "counters-meat_8hpp.html#a75f789c12bebd743c636550d811dc23e", null ], [ "j", "counters-meat_8hpp.html#abf2d9f657468255c5b9964ea2b6e9e15", null ], [ "name_", "counters-meat_8hpp.html#abb04fb263c779506595a61eaedf1f7ef", null ], diff --git a/counters-meat_8hpp_source.html b/counters-meat_8hpp_source.html index e5e4b1664..18a9cd231 100644 --- a/counters-meat_8hpp_source.html +++ b/counters-meat_8hpp_source.html @@ -178,23 +178,23 @@
80 
81 }
82 
-
83 COUNTER_TEMPLATE(double, count)(Array_Type & Array, size_t i, size_t j)
+
83 COUNTER_TEMPLATE(double, count)(Array_Type & Array, size_t i, size_t j)
84 {
85 
86  if (count_fun == nullptr)
87  return 0.0;
88 
-
89  return count_fun(Array, i, j, data);
+
89  return count_fun(Array, i, j, data);
90 
91 }
92 
-
93 COUNTER_TEMPLATE(double, init)(Array_Type & Array, size_t i, size_t j)
+
93 COUNTER_TEMPLATE(double, init)(Array_Type & Array, size_t i, size_t j)
94 {
95 
96  if (init_fun == nullptr)
97  return 0.0;
98 
-
99  return init_fun(Array, i, j, data);
+
99  return init_fun(Array, i, j, data);
100 
101 }
102 
@@ -236,8 +236,8 @@
140 COUNTERS_TEMPLATE(, Counters)(const Counters<Array_Type,Data_Type> & counter_) :
141  data(counter_.data), hasher(counter_.hasher) {}
142 
-
143 COUNTERS_TEMPLATE(, Counters)(Counters<Array_Type,Data_Type> && counters_) noexcept :
-
144  data(std::move(counters_.data)), hasher(std::move(counters_.hasher)) {}
+
143 COUNTERS_TEMPLATE(, Counters)(Counters<Array_Type,Data_Type> && counters_) noexcept :
+
144  data(std::move(counters_.data)), hasher(std::move(counters_.hasher)) {}
145 
146 COUNTERS_TEMPLATE(COUNTERS_TYPE(), operator=)(const Counters<Array_Type,Data_Type> & counter_) {
147 
@@ -251,12 +251,12 @@
155 
156 }
157 
-
158 COUNTERS_TEMPLATE(COUNTERS_TYPE() &, operator=)(Counters<Array_Type,Data_Type> && counters_) noexcept
+
158 COUNTERS_TEMPLATE(COUNTERS_TYPE() &, operator=)(Counters<Array_Type,Data_Type> && counters_) noexcept
159 {
160 
-
161  if (this != &counters_) {
-
162  data = std::move(counters_.data);
-
163  hasher = std::move(counters_.hasher);
+
161  if (this != &counters_) {
+
162  data = std::move(counters_.data);
+
163  hasher = std::move(counters_.hasher);
164  }
165 
166  return *this;
@@ -275,7 +275,7 @@
179  Counter_fun_type<Array_Type,Data_Type> count_fun_,
180  Counter_fun_type<Array_Type,Data_Type> init_fun_,
181  Hasher_fun_type<Array_Type,Data_Type> hasher_fun_,
-
182  Data_Type data_,
+
182  Data_Type data_,
183  std::string name_,
184  std::string desc_
185 )
@@ -285,7 +285,7 @@
189  count_fun_,
190  init_fun_,
191  hasher_fun_,
-
192  data_,
+
192  data_,
193  name_,
194  desc_
195  ));
@@ -298,9 +298,9 @@
202 {
203 
204  std::vector< std::string > out;
-
205  out.reserve(this->size());
-
206  for (size_t i = 0u; i < this->size(); ++i)
-
207  out.push_back(this->data.at(i).get_name());
+
205  out.reserve(this->size());
+
206  for (size_t i = 0u; i < this->size(); ++i)
+
207  out.push_back(this->data.at(i).get_name());
208 
209  return out;
210 
@@ -310,9 +310,9 @@
214 {
215 
216  std::vector< std::string > out;
-
217  out.reserve(this->size());
-
218  for (size_t i = 0u; i < this->size(); ++i)
-
219  out.push_back(data.at(i).get_description());
+
217  out.reserve(this->size());
+
218  for (size_t i = 0u; i < this->size(); ++i)
+
219  out.push_back(data.at(i).get_description());
220 
221  return out;
222 
@@ -350,8 +350,8 @@
254  // Ading the global hasher, if one exists
255  if (hasher)
256  {
-
257  for (auto i: hasher(array, nullptr))
-
258  res.push_back(i);
+
257  for (auto i: hasher(array, nullptr))
+
258  res.push_back(i);
259  }
260 
261  // We have to return something...
@@ -396,7 +396,6 @@
hasher_fun_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > hasher_fun_
Definition: counters-meat.hpp:181
desc_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string std::string desc_
Definition: counters-meat.hpp:186
COUNTER_TEMPLATE
#define COUNTER_TEMPLATE(a, b)
Definition: counters-meat.hpp:8
-
i
size_t i
Definition: counters-meat.hpp:83
COUNTER_TYPE
#define COUNTER_TYPE()
Definition: counters-meat.hpp:4
hasher
Data_Type hasher(counter_.hasher)
Definition: counters-meat.hpp:141
count_fun
return count_fun(Array, i, j, data)
@@ -404,12 +403,12 @@
j
size_t size_t j
Definition: counters-meat.hpp:84
add_dims
bool add_dims
Definition: counters-meat.hpp:229
counter
Data_Type counter
Definition: counters-meat.hpp:171
-
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
COUNTERS_TYPE
#define COUNTERS_TYPE()
Definition: counters-meat.hpp:125
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
+
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
COUNTERS_TEMPLATE
#define COUNTERS_TEMPLATE(a, b)
Definition: counters-meat.hpp:129
-
size
return arrays2support size() - 1u
-
counters_
Data_Counter_Type * counters_
Definition: model-meat.hpp:344
+
counters_
Data_Type * counters_
Definition: statscounter-meat.hpp:54
Hasher_fun_type
std::function< std::vector< double >(const Array_Type &, Data_Type *)> Hasher_fun_type
Hasher function used by the counter.
Definition: typedefs.hpp:200
Counter_fun_type
std::function< double(const Array_Type &, size_t, size_t, Data_Type &)> Counter_fun_type
Counter and rule functions.
Definition: typedefs.hpp:187
@@ -418,7 +417,7 @@ diff --git a/defm-bones_8hpp.html b/defm-bones_8hpp.html index 157a0c5e3..74aacc909 100644 --- a/defm-bones_8hpp.html +++ b/defm-bones_8hpp.html @@ -121,7 +121,7 @@ diff --git a/defm-bones_8hpp_source.html b/defm-bones_8hpp_source.html index be13b2b45..4f6eca7ca 100644 --- a/defm-bones_8hpp_source.html +++ b/defm-bones_8hpp_source.html @@ -163,7 +163,7 @@
70 
71  std::vector< double > logodds(
72  const std::vector< double > & par,
-
73  size_t i,
+
73  size_t i,
74  size_t j
75  );
76 
@@ -206,8 +206,8 @@
DEFM::get_n_y
size_t get_n_y() const
Definition: defm-meat.hpp:280
DEFM::simulate
void simulate(std::vector< double > par, int *y_out)
Definition: defm-meat.hpp:39
DEFM::motif_census
barry::FreqTable< int > motif_census(std::vector< size_t > idx)
Definition: defm-meat.hpp:321
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
DEFMModel
barry::Model< DEFMArray, DEFMCounterData, DEFMRuleData, DEFMRuleDynData > DEFMModel
Definition: defm-types.hpp:175
@@ -216,7 +216,7 @@ diff --git a/defm-meat_8hpp.html b/defm-meat_8hpp.html index 5b8472c3f..cfa675f3c 100644 --- a/defm-meat_8hpp.html +++ b/defm-meat_8hpp.html @@ -113,9 +113,9 @@ - + - +

Macros

#define DEFM_RANGES(a)
#define DEFM_RANGES(a)
 
#define DEFM_LOOP_ARRAYS(a)    for (size_t a = 0u; a < (nobs_i - M_order); ++a)
#define DEFM_LOOP_ARRAYS(a)    for (size_t a = 0u; a < (nobs_i - M_order); ++a)
 
- - + +

@@ -134,8 +134,8 @@

#define DEFM_LOOP_ARRAYS

 (  a)    for (size_t a = 0u; a < (nobs_i - M_order); ++a)a)    for (size_t a = 0u; a < (nobs_i - M_order); ++a)
@@ -154,15 +154,14 @@

#define DEFM_RANGES (   - a) + a)

-Value:
size_t start_i = start_end[a * 2u];\
-
size_t end_i = start_end[a * 2u + 1u];\
+Value:
size_t start_i = start_end[a * 2u];\
+
size_t end_i = start_end[a * 2u + 1u];\
size_t nobs_i = end_i - start_i + 1u;
-
a
size_t a
Definition: model-meat.hpp:1287

Definition at line 31 of file defm-meat.hpp.

@@ -213,7 +212,7 @@

  • include
  • barry
  • models
  • defm
  • defm-meat.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/defm-meat_8hpp_source.html b/defm-meat_8hpp_source.html index 387e66d1c..a40d28e55 100644 --- a/defm-meat_8hpp_source.html +++ b/defm-meat_8hpp_source.html @@ -118,9 +118,9 @@
20 
21  // size_t iter = 2u;
22  // Adding the cells
-
23  for (size_t i = 0u; i < (nrow - 1); ++i)
+
23  for (size_t i = 0u; i < (nrow - 1); ++i)
24  for (size_t j = 0u; j < ncol; ++j)
-
25  res.push_back(Array_(i, j));
+
25  res.push_back(Array_(i, j));
26 
27  return res;
28 
@@ -143,11 +143,11 @@
45  size_t n_entry = M_order * Y_ncol;
46  auto idx = this->get_arrays2support();
47  DEFMArray last_array;
-
48  for (size_t i = 0u; i < N; ++i)
+
48  for (size_t i = 0u; i < N; ++i)
49  {
50 
51  // Figuring out how many processes can we observe
-
52  DEFM_RANGES(i)
+
52  DEFM_RANGES(i)
53 
54  DEFM_LOOP_ARRAYS(proc_n)
55  {
@@ -220,14 +220,14 @@
122  Y_shared = std::make_shared< std::vector<int> >(id_length * y_ncol);
123  X_shared = std::make_shared< std::vector<double> >(id_length * x_ncol);
124 
-
125  for (size_t i = 0u; i < id_length; ++i)
-
126  ID_shared->at(i) = *(id + i);
+
125  for (size_t i = 0u; i < id_length; ++i)
+
126  ID_shared->at(i) = *(id + i);
127 
-
128  for (size_t i = 0u; i < (id_length * y_ncol); ++i)
-
129  Y_shared->at(i) = *(y + i);
+
128  for (size_t i = 0u; i < (id_length * y_ncol); ++i)
+
129  Y_shared->at(i) = *(y + i);
130 
-
131  for (size_t i = 0u; i < (id_length * x_ncol); ++i)
-
132  X_shared->at(i) = *(x + i);
+
131  for (size_t i = 0u; i < (id_length * x_ncol); ++i)
+
132  X_shared->at(i) = *(x + i);
133 
134  ID = &ID_shared->at(0u);
135  Y = &Y_shared->at(0u);
@@ -299,11 +299,11 @@
201  N++;
202 
203  // Creating the names
-
204  for (auto i = 0u; i < Y_ncol; ++i)
-
205  Y_names.emplace_back(std::string("y") + std::to_string(i));
+
204  for (auto i = 0u; i < Y_ncol; ++i)
+
205  Y_names.emplace_back(std::string("y") + std::to_string(i));
206 
-
207  for (auto i = 0u; i < X_ncol; ++i)
-
208  X_names.emplace_back(std::string("X") + std::to_string(i));
+
207  for (auto i = 0u; i < X_ncol; ++i)
+
208  X_names.emplace_back(std::string("X") + std::to_string(i));
209 
210  return;
211 
@@ -322,25 +322,25 @@
224  if (this->column_major)
225  {
226 
-
227  element_access = [](size_t i, size_t j, size_t nrow, size_t) -> size_t {
-
228  return i + j * nrow;
+
227  element_access = [](size_t i, size_t j, size_t nrow, size_t) -> size_t {
+
228  return i + j * nrow;
229  };
230 
231  } else {
232 
-
233  element_access = [](size_t i, size_t j, size_t, size_t ncol) -> size_t {
-
234  return j + i * ncol;
+
233  element_access = [](size_t i, size_t j, size_t, size_t ncol) -> size_t {
+
234  return j + i * ncol;
235  };
236 
237  }
238 
239  // Creating the arrays
-
240  for (size_t i = 0u; i < N; ++i)
+
240  for (size_t i = 0u; i < N; ++i)
241  {
242 
243  // Figuring out how many processes can we observe
-
244  size_t start_i = start_end[i * 2u];
-
245  size_t end_i = start_end[i * 2u + 1u];
+
244  size_t start_i = start_end[i * 2u];
+
245  size_t end_i = start_end[i * 2u + 1u];
246  size_t nobs_i = end_i - start_i + 1u;
247 
248  // Creating the observations.
@@ -356,12 +356,12 @@
258  );
259 
260  // Filling-out the array
-
261  for (size_t k = 0u; k < Y_ncol; ++k)
+
261  for (size_t k = 0u; k < Y_ncol; ++k)
262  for (size_t o = 0u; o < (M_order + 1u); ++o)
263  // array(o, k) = *(Y + k * ID_length + start_i + n_proc + o);
-
264  array(o, k) = *(Y + element_access(
+
264  array(o, k) = *(Y + element_access(
265  start_i + n_proc + o, // Row
-
266  k, // Column
+
266  k, // Column
267  ID_length, // N_row
268  Y_ncol // N_col
269  ));
@@ -421,18 +421,18 @@
323 ) {
324 
325  // Checking all sizes
-
326  for (const auto & i : idx)
-
327  if (i >= Y_ncol)
+
326  for (const auto & i : idx)
+
327  if (i >= Y_ncol)
328  throw std::range_error("The -idx- for motif accounting is out of range.");
329 
330  barry::FreqTable<int> ans;
331  std::vector<int> array(idx.size() * (M_order + 1));
332 
-
333  for (size_t i = 0u; i < N; ++i)
+
333  for (size_t i = 0u; i < N; ++i)
334  {
335 
336  // Figuring out how many processes can we observe
-
337  DEFM_RANGES(i)
+
337  DEFM_RANGES(i)
338 
339  DEFM_LOOP_ARRAYS(proc_n)
340  {
@@ -441,8 +441,8 @@
343  size_t nele = 0u;
344 
345  for (size_t o = 0u; o < (M_order + 1u); ++o)
-
346  for (auto & k : idx)
-
347  array[nele++] = *(Y + k * ID_length + start_i + proc_n + o);
+
346  for (auto & k : idx)
+
347  array[nele++] = *(Y + k * ID_length + start_i + proc_n + o);
348 
349  ans.add(array, nullptr);
350 
@@ -463,11 +463,11 @@
365 
366  std::vector< double > res(ID_length, std::nan(""));
367 
-
368  for (size_t i = 0u; i < N; ++i)
+
368  for (size_t i = 0u; i < N; ++i)
369  {
370 
371  // Figuring out how many processes can we observe
-
372  DEFM_RANGES(i)
+
372  DEFM_RANGES(i)
373 
374  DEFM_LOOP_ARRAYS(n_proc)
375  {
@@ -480,9 +480,9 @@
382  );
383 
384  // Filling-out the array
-
385  for (size_t k = 0u; k < Y_ncol; ++k)
+
385  for (size_t k = 0u; k < Y_ncol; ++k)
386  for (size_t o = 0u; o < (M_order + 1u); ++o)
-
387  array(o, k) = *(Y + k * ID_length + start_i + n_proc + o);
+
387  array(o, k) = *(Y + k * ID_length + start_i + n_proc + o);
388 
389  double p_1 = this->conditional_prob(array, par, i_, j_);
390  res[M_order + start_i + n_proc] = std::log(p_1/(1.0 - p_1));
@@ -538,8 +538,8 @@
440 {
441  std::vector< bool > res(0u);
442  auto * counterss = DEFMModel::get_counters();
-
443  for (size_t i = 0u; i < counters->size(); ++i)
-
444  res.push_back(counterss->operator[](i).data.is_motif);
+
443  for (size_t i = 0u; i < counters->size(); ++i)
+
444  res.push_back(counterss->operator[](i).data.is_motif);
445 
446  return res;
447 }
@@ -577,15 +577,14 @@
DEFM::motif_census
barry::FreqTable< int > motif_census(std::vector< size_t > idx)
Definition: defm-meat.hpp:321
res
return res
Definition: counters-meat.hpp:265
data
Data_Type &&counter_ data(std::move(counter_.data))
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
keygen_defm
std::vector< double > keygen_defm(const DEFMArray &Array_, DEFMCounterData *data)
Definition: defm-meat.hpp:4
DEFM_LOOP_ARRAYS
#define DEFM_LOOP_ARRAYS(a)
Definition: defm-meat.hpp:36
DEFM_RANGES
#define DEFM_RANGES(a)
Definition: defm-meat.hpp:31
DEFMArray
barry::BArrayDense< int, DEFMData > DEFMArray
Definition: defm-types.hpp:3
rules_markov_fixed
void rules_markov_fixed(DEFMRules *rules, size_t markov_order)
Number of edges.
Definition: counters.hpp:653
-
k
size_t k
Definition: model-meat.hpp:1294
@@ -593,7 +592,7 @@ diff --git a/defm-types_8hpp.html b/defm-types_8hpp.html index 6883f93dc..199e5d566 100644 --- a/defm-types_8hpp.html +++ b/defm-types_8hpp.html @@ -171,7 +171,7 @@

  • include
  • barry
  • models
  • defm
  • defm-types.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/defm-types_8hpp_source.html b/defm-types_8hpp_source.html index aebd6f9df..7a8338402 100644 --- a/defm-types_8hpp_source.html +++ b/defm-types_8hpp_source.html @@ -124,8 +124,8 @@
42  ) : array(array_), covariates(covariates_), obs_start(obs_start_),
43  X_ncol(X_ncol_), X_nrow(X_nrow_) {};
44 
-
52  double operator()(size_t i, size_t j) const;
-
53  double at(size_t i, size_t j) const;
+
52  double operator()(size_t i, size_t j) const;
+
53  double at(size_t i, size_t j) const;
54  size_t ncol() const;
55  size_t nrow() const;
56  void print() const;
@@ -151,9 +151,9 @@
78  ): indices(indices_), numbers(numbers_),
79  logical(logical_), is_motif(is_motif_) {};
80 
-
81  size_t idx(size_t i) const {return indices[i];};
-
82  double num(size_t i) const {return numbers[i];};
-
83  bool is_true(size_t i) const {return logical[i];};
+
81  size_t idx(size_t i) const {return indices[i];};
+
82  double num(size_t i) const {return numbers[i];};
+
83  bool is_true(size_t i) const {return logical[i];};
84 
85  ~DEFMCounterData() {};
86 
@@ -168,9 +168,9 @@
95 
96  bool init = false;
97 
-
98  double num(size_t i) const {return numbers[i];};
-
99  size_t idx(size_t i) const {return indices[i];};
-
100  bool is_true(size_t i) const {return logical[i];};
+
98  double num(size_t i) const {return numbers[i];};
+
99  size_t idx(size_t i) const {return indices[i];};
+
100  bool is_true(size_t i) const {return logical[i];};
101 
102  DEFMRuleData() {};
103 
@@ -183,14 +183,14 @@
110  DEFMRuleData(
111  std::vector< double > numbers_,
112  std::vector< size_t > indices_
-
113  ) : numbers(numbers_), indices(indices_), logical(numbers_.size()) {};
+
113  ) : numbers(numbers_), indices(indices_), logical(numbers_.size()) {};
114 
115 };
116 
117 
-
118 inline double DEFMData::operator()(size_t i, size_t j) const
+
118 inline double DEFMData::operator()(size_t i, size_t j) const
119 {
-
120  return *(covariates + (obs_start + j * X_nrow + i));
+
120  return *(covariates + (obs_start + j * X_nrow + i));
121 }
122 
123 inline size_t DEFMData::ncol() const {
@@ -203,12 +203,12 @@
130 
131 inline void DEFMData::print() const {
132 
-
133  for (size_t i = 0u; i < array->nrow(); ++i)
+
133  for (size_t i = 0u; i < array->nrow(); ++i)
134  {
135 
-
136  printf_barry("row %li (%li): ", i, obs_start + i);
+
136  printf_barry("row %li (%li): ", i, obs_start + i);
137  for (size_t j = 0u; j < X_ncol; ++j)
-
138  printf_barry("% 5.2f, ", operator()(i, j));
+
138  printf_barry("% 5.2f, ", operator()(i, j));
139  printf_barry("\n");
140 
141  }
@@ -249,8 +249,8 @@
DEFMData
Data class for DEFM arrays.
Definition: defm-types.hpp:16
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
DEFMArray
barry::BArrayDense< int, DEFMData > DEFMArray
Definition: defm-types.hpp:3
DEFMCounterData::~DEFMCounterData
~DEFMCounterData()
Definition: defm-types.hpp:85
DEFMData::X_ncol
size_t X_ncol
Number of columns in the array of covariates.
Definition: defm-types.hpp:22
@@ -299,14 +299,13 @@
DEFMSupport
barry::Support< DEFMArray, DEFMCounterData, DEFMRuleData, DEFMRuleDynData > DEFMSupport
Definition: defm-types.hpp:173
DEFMCounter
barry::Counter< DEFMArray, DEFMCounterData > DEFMCounter
Definition: defm-types.hpp:171
DEFMRuleData::DEFMRuleData
DEFMRuleData()
Definition: defm-types.hpp:102
-
size
return arrays2support size() - 1u
diff --git a/defm_2counters_8hpp.html b/defm_2counters_8hpp.html index 04aa629c9..bbd82d21b 100644 --- a/defm_2counters_8hpp.html +++ b/defm_2counters_8hpp.html @@ -123,21 +123,21 @@ - + - + - + - + - + - + - +

Macros

#define MAKE_DEFM_HASHER(hasher, a, cov)
#define MAKE_DEFM_HASHER(hasher, a, cov)
 
#define DEFM_RULEDYN_LAMBDA(a)
#define DEFM_RULEDYN_LAMBDA(a)
 
#define UNI_SUB(a)
#define UNI_SUB(a)
 
Macros for defining counters
#define DEFM_COUNTER(a)   inline double (a) (const DEFMArray & Array, size_t i, size_t j, DEFMCounterData & data)
#define DEFM_COUNTER(a)   inline double (a) (const DEFMArray & Array, size_t i, size_t j, DEFMCounterData & data)
 
#define DEFM_COUNTER_LAMBDA(a)
#define DEFM_COUNTER_LAMBDA(a)
 
Macros for defining rules
#define DEFM_RULE(a)   inline bool (a) (const DEFMArray & Array, size_t i, size_t j, bool & data)
#define DEFM_RULE(a)   inline bool (a) (const DEFMArray & Array, size_t i, size_t j, bool & data)
 
#define DEFM_RULE_LAMBDA(a)
#define DEFM_RULE_LAMBDA(a)
 
- + @@ -164,7 +164,7 @@ - + @@ -182,8 +182,8 @@

#define DEFM_COUNTER

- - + +

@@ -153,7 +153,7 @@

void counter_transition_formula (DEFMCounters *counters, std::string formula, size_t m_order, size_t n_y, int covar_index=-1, std::string vname="", const std::vector< std::string > *x_names=nullptr, const std::vector< std::string > *y_names=nullptr)
 Prevalence of ones. More...
 
void counter_fixed_effect (DEFMCounters *counters, int covar_index, double k, std::string vname="", const std::vector< std::string > *x_names=nullptr)
void counter_fixed_effect (DEFMCounters *counters, int covar_index, double k, std::string vname="", const std::vector< std::string > *x_names=nullptr)
 Prevalence of ones. More...
 
Returns true if the cell is free
void rules_markov_fixed (DEFMRules *rules, size_t markov_order)
void rules_markov_fixed (DEFMRules *rules, size_t markov_order)
 Number of edges. More...
 
void rules_dont_become_zero (DEFMSupport *support, std::vector< size_t > ids)
(  a)   inline double (a) (const DEFMArray & Array, size_t i, size_t j, DEFMCounterData & data)a)   inline double (a) (const DEFMArray & Array, size_t i, size_t j, DEFMCounterData & data)
@@ -203,19 +203,18 @@

#define DEFM_COUNTER_LAMBDA (   - a) + a)

-Value:
barry::Counter_fun_type<DEFMArray, DEFMCounterData> a = \
-
[](const DEFMArray & Array, size_t i, size_t j, DEFMCounterData & data) -> double
+Value:
barry::Counter_fun_type<DEFMArray, DEFMCounterData> a = \
+
[](const DEFMArray & Array, size_t i, size_t j, DEFMCounterData & data) -> double
DEFMCounterData
Data class used to store arbitrary size_t or double vectors.
Definition: defm-types.hpp:64
data
Data_Type &&counter_ data(std::move(counter_.data))
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
DEFMArray
barry::BArrayDense< int, DEFMData > DEFMArray
Definition: defm-types.hpp:3
-
a
size_t a
Definition: model-meat.hpp:1287

Lambda function for definition of a network counter function

Definition at line 43 of file counters.hpp.

@@ -232,8 +231,8 @@

#define DEFM_RULE (   - a) -    inline bool (a) (const DEFMArray & Array, size_t i, size_t j, bool & data) + a) +    inline bool (a) (const DEFMArray & Array, size_t i, size_t j, bool & data)

@@ -253,13 +252,13 @@

#define DEFM_RULE_LAMBDA (   - a) + a)

-Value:
barry::Rule_fun_type<DEFMArray, DEFMRuleData> a = \
-
[](const DEFMArray & Array, size_t i, size_t j, DEFMRuleData & data) -> bool
+Value:
barry::Rule_fun_type<DEFMArray, DEFMRuleData> a = \
+
[](const DEFMArray & Array, size_t i, size_t j, DEFMRuleData & data) -> bool

Lambda function for definition of a network counter function

@@ -277,13 +276,13 @@

#define DEFM_RULEDYN_LAMBDA (   - a) + a)

-Value:
barry::Rule_fun_type<DEFMArray, DEFMRuleDynData> a = \
-
[](const DEFMArray & Array, size_t i, size_t j, DEFMRuleDynData & data) -> bool
+Value:
barry::Rule_fun_type<DEFMArray, DEFMRuleDynData> a = \
+
[](const DEFMArray & Array, size_t i, size_t j, DEFMRuleDynData & data) -> bool

Lambda function for definition of a network counter function

@@ -301,21 +300,21 @@

#define UNI_SUB (   - a) + a)

Value:
(\
-
((a) == 0) ? u8"\u2080" : (\
-
((a) == 1) ? u8"\u2081" : (\
-
((a) == 2) ? u8"\u2082" : (\
-
((a) == 3) ? u8"\u2083" : (\
-
((a) == 4) ? u8"\u2084" : (\
-
((a) == 5) ? u8"\u2085" : (\
-
((a) == 6) ? u8"\u2086" : (\
-
((a) == 7) ? u8"\u2087" : (\
-
((a) == 8) ? u8"\u2088" : \
+
((a) == 0) ? u8"\u2080" : (\
+
((a) == 1) ? u8"\u2081" : (\
+
((a) == 2) ? u8"\u2082" : (\
+
((a) == 3) ? u8"\u2083" : (\
+
((a) == 4) ? u8"\u2084" : (\
+
((a) == 5) ? u8"\u2085" : (\
+
((a) == 6) ? u8"\u2086" : (\
+
((a) == 7) ? u8"\u2087" : (\
+
((a) == 8) ? u8"\u2088" : \
u8"\u2089"))))))))\
)
@@ -327,7 +326,7 @@

  • include
  • barry
  • models
  • defm
  • counters.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/defm_2counters_8hpp_source.html b/defm_2counters_8hpp_source.html index 89d949725..1590a444c 100644 --- a/defm_2counters_8hpp_source.html +++ b/defm_2counters_8hpp_source.html @@ -162,10 +162,10 @@
96  {
97 
98  // Only count the current
-
99  if (i != (Array.nrow() - 1))
+
99  if (i != (Array.nrow() - 1))
100  return 0.0;
101 
-
102  return Array.D()(i, data.idx(0u));
+
102  return Array.D()(i, data.idx(0u));
103 
104  };
105 
@@ -193,7 +193,7 @@
127  {
128 
129  // Only count the current
-
130  if (i != (Array.nrow() - 1))
+
130  if (i != (Array.nrow() - 1))
131  return 0.0;
132 
133  return 1.0;
@@ -241,7 +241,7 @@
175 
176  DEFM_COUNTER_LAMBDA(tmp_counter)
177  {
-
178  if (i != (Array.nrow() - 1))
+
178  if (i != (Array.nrow() - 1))
179  return 0.0;
180 
181  if (j != data.idx(0u))
@@ -250,17 +250,17 @@
184  return 1.0;
185  };
186 
-
187  for (auto i : which)
+
187  for (auto i : which)
188  {
189 
190  if (y_names != nullptr)
-
191  vname = y_names->operator[](i);
+
191  vname = y_names->operator[](i);
192  else
-
193  vname = std::to_string(i);
+
193  vname = std::to_string(i);
194 
195  counters->add_counter(
196  tmp_counter, nullptr, nullptr,
-
197  DEFMCounterData({i}, {}, {}, false),
+
197  DEFMCounterData({i}, {}, {}, false),
198  "Logit intercept " + vname,
199  "Equal to one if the outcome " + vname + " is one. Equivalent to the logistic regression intercept."
200  );
@@ -271,26 +271,26 @@
205 
206  DEFM_COUNTER_LAMBDA(tmp_counter)
207  {
-
208  if (i != Array.nrow() - 1)
+
208  if (i != Array.nrow() - 1)
209  return 0.0;
210 
211  if (j != data.idx(0u))
212  return 0.0;
213 
-
214  return Array.D()(i, data.idx(1u));
+
214  return Array.D()(i, data.idx(1u));
215  };
216 
217  MAKE_DEFM_HASHER(hasher, array, covar_index)
218  bool hasher_added = false;
219 
220  std::string yname;
-
221  for (auto i : which)
+
221  for (auto i : which)
222  {
223 
224  if (y_names != nullptr)
-
225  yname = y_names->operator[](i);
+
225  yname = y_names->operator[](i);
226  else
-
227  yname = std::to_string(i);
+
227  yname = std::to_string(i);
228 
229  if (vname == "")
230  {
@@ -303,7 +303,7 @@
237  if (hasher_added)
238  counters->add_counter(
239  tmp_counter, nullptr, nullptr,
-
240  DEFMCounterData({i, static_cast<size_t>(covar_index)}, {}, {}, false),
+
240  DEFMCounterData({i, static_cast<size_t>(covar_index)}, {}, {}, false),
241  "Logit intercept " + yname + " x " + vname,
242  "Equal to one if the outcome " + yname + " is one. Equivalent to the logistic regression intercept."
243  );
@@ -313,7 +313,7 @@
247 
248  counters->add_counter(
249  tmp_counter, nullptr, hasher,
-
250  DEFMCounterData({i, static_cast<size_t>(covar_index)}, {}, {}, false),
+
250  DEFMCounterData({i, static_cast<size_t>(covar_index)}, {}, {}, false),
251  "Logit intercept " + yname + " x " + vname,
252  "Equal to one if the outcome " + yname + " is one. Equivalent to the logistic regression intercept."
253  );
@@ -356,10 +356,10 @@
296 
297  auto indices = data.indices;
298 
-
299  for (size_t i = 0u; i < (indices.size() - 1u); ++i)
+
299  for (size_t i = 0u; i < (indices.size() - 1u); ++i)
300  {
301  if (
-
302  std::floor(indices[i] / Array.nrow()) >=
+
302  std::floor(indices[i] / Array.nrow()) >=
303  static_cast<int>(Array.ncol())
304  )
305  throw std::range_error("The motif includes entries out of range.");
@@ -378,7 +378,7 @@
318 
319  // Checking if the observation is in the stat. We
320  const auto & array = Array.get_data();
-
321  size_t loc = i + j * Array.nrow();
+
321  size_t loc = i + j * Array.nrow();
322  size_t n_cells = dat.size() - 1u;
323 
324  // Only one currently needs to be a zero for it
@@ -450,19 +450,19 @@
390  for (size_t d = 0u; d < n_cells; ++d)
391  {
392  size_t c = std::floor(coords[d] / (m_order + 1u));
-
393  size_t r = coords[d] - c * (m_order + 1u);
-
394  motif(r, c) = signs[d] ? 1 : -1;
+
393  size_t r = coords[d] - c * (m_order + 1u);
+
394  motif(r, c) = signs[d] ? 1 : -1;
395 
396  }
397 
398  // Checking if any prior to the event
399  bool any_before_event = false;
400 
-
401  for (size_t i = 0u; i < m_order; ++i)
+
401  for (size_t i = 0u; i < m_order; ++i)
402  {
403  for (size_t j = 0u; j < n_y; ++j)
404  {
-
405  if (motif(i,j) != 0)
+
405  if (motif(i,j) != 0)
406  {
407  any_before_event = true;
408  break;
@@ -513,7 +513,7 @@
453  #endif
454 
455  // If order is greater than zero, the starting point of the transtion
-
456  for (size_t i = 0u; i < m_order; ++i)
+
456  for (size_t i = 0u; i < m_order; ++i)
457  {
458 
459  bool row_start = true;
@@ -521,7 +521,7 @@
461  {
462 
463  // Is it included?
-
464  if (motif(i,j) == 0)
+
464  if (motif(i,j) == 0)
465  continue;
466 
467  // Is not the first?
@@ -536,9 +536,9 @@
476  name += (std::string("y") + std::to_string(j));
477 
478  #ifdef BARRY_WITH_LATEX
-
479  name += (motif(i,j) < 0 ? "^-" : "^+");
+
479  name += (motif(i,j) < 0 ? "^-" : "^+");
480  #else
-
481  name += (motif(i,j) < 0 ? u8"\u207B" : u8"\u207A");
+
481  name += (motif(i,j) < 0 ? u8"\u207B" : u8"\u207A");
482  #endif
483 
484  }
@@ -658,7 +658,7 @@
610 inline void counter_fixed_effect(
611  DEFMCounters * counters,
612  int covar_index,
-
613  double k,
+
613  double k,
614  std::string vname = "",
615  const std::vector< std::string > * x_names = nullptr
616 )
@@ -666,7 +666,7 @@
618 
619  DEFM_COUNTER_LAMBDA(count_init)
620  {
-
621  return std::pow(Array.D()((size_t) i, data.idx(0u)), data.num(0u));
+
621  return std::pow(Array.D()((size_t) i, data.idx(0u)), data.num(0u));
622  };
623 
624  DEFM_COUNTER_LAMBDA(count_tmp)
@@ -683,8 +683,8 @@
635 
636  counters->add_counter(
637  count_tmp, count_init, hasher,
-
638  DEFMCounterData({static_cast<size_t>(covar_index)}, {k}, {}),
-
639  "Fixed effect feature (" + vname + ")^" + std::to_string(k)
+
638  DEFMCounterData({static_cast<size_t>(covar_index)}, {k}, {}),
+
639  "Fixed effect feature (" + vname + ")^" + std::to_string(k)
640  );
641 
642  return;
@@ -693,15 +693,15 @@
645 
651 // -----------------------------------------------------------------------------
653 inline void rules_markov_fixed(
-
654  DEFMRules * rules,
+
654  DEFMRules * rules,
655  size_t markov_order
656  ) {
657 
658  DEFM_RULE_LAMBDA(no_self_tie) {
-
659  return i >= data.idx(0u);
+
659  return i >= data.idx(0u);
660  };
661 
-
662  rules->add_rule(
+
662  rules->add_rule(
663  no_self_tie,
664  DEFMRuleData({},{markov_order}),
665  std::string("Markov model of order ") + std::to_string(markov_order),
@@ -742,12 +742,12 @@
706  return true;
707 
708  // The data outside of the markov chain is checked by other rule
-
709  if (i != (Array.nrow() - 1))
+
709  if (i != (Array.nrow() - 1))
710  return true;
711 
712  // This is now one, is the next different zero? If so,
713  // we can include it (1->1)
-
714  return (Array(i - 1, j) != 1) || (Array(i, j) != 1);
+
714  return (Array(i - 1, j) != 1) || (Array(i, j) != 1);
715 
716  };
717 
@@ -768,9 +768,9 @@
name
Data_Type &&counter_ name(std::move(counter_.name))
data
Data_Type &&counter_ data(std::move(counter_.data))
-
i
size_t i
Definition: counters-meat.hpp:83
hasher
Data_Type hasher(counter_.hasher)
Definition: counters-meat.hpp:141
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
DEFM_COUNTER_LAMBDA
#define DEFM_COUNTER_LAMBDA(a)
Definition: counters.hpp:43
DEFM_RULE_LAMBDA
#define DEFM_RULE_LAMBDA(a)
Definition: counters.hpp:57
@@ -787,9 +787,6 @@
DEFMCounters
barry::Counters< DEFMArray, DEFMCounterData > DEFMCounters
Definition: defm-types.hpp:172
DEFMRules
barry::Rules< DEFMArray, DEFMRuleData > DEFMRules
Definition: defm-types.hpp:179
DEFMSupport
barry::Support< DEFMArray, DEFMCounterData, DEFMRuleData, DEFMRuleDynData > DEFMSupport
Definition: defm-types.hpp:173
-
r
double r
Definition: model-meat.hpp:1291
-
rules
Data_Rule_Type & rules
Definition: model-meat.hpp:371
-
k
size_t k
Definition: model-meat.hpp:1294
@@ -797,7 +794,7 @@ diff --git a/defm_8hpp.html b/defm_8hpp.html index 35e820b61..9a6e07121 100644 --- a/defm_8hpp.html +++ b/defm_8hpp.html @@ -133,7 +133,7 @@ diff --git a/defm_8hpp_source.html b/defm_8hpp_source.html index ab7d9752f..a9c41466c 100644 --- a/defm_8hpp_source.html +++ b/defm_8hpp_source.html @@ -126,7 +126,7 @@ diff --git a/dir_000001_000002.html b/dir_000001_000002.html index 6fa1470c1..70e3e355a 100644 --- a/dir_000001_000002.html +++ b/dir_000001_000002.html @@ -98,7 +98,7 @@

barry → counters Relation

diff --git a/dir_000003_000004.html b/dir_000003_000004.html index 5ea2e6fe6..811c368a4 100644 --- a/dir_000003_000004.html +++ b/dir_000003_000004.html @@ -98,7 +98,7 @@

models → defm Relation

  • include
  • barry
  • models
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/dir_000003_000005.html b/dir_000003_000005.html index c0bf3394f..bf6353358 100644 --- a/dir_000003_000005.html +++ b/dir_000003_000005.html @@ -98,7 +98,7 @@

models → geese Relation

  • include
  • barry
  • models
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/dir_488ec4010567cc6d95c62bdcb57a6d3e.html b/dir_488ec4010567cc6d95c62bdcb57a6d3e.html index 3b786f550..df90a2f47 100644 --- a/dir_488ec4010567cc6d95c62bdcb57a6d3e.html +++ b/dir_488ec4010567cc6d95c62bdcb57a6d3e.html @@ -130,7 +130,7 @@ diff --git a/dir_6e63e3665115632dc5d61b2d6d6c3354.html b/dir_6e63e3665115632dc5d61b2d6d6c3354.html index 002e944b9..e67abc60f 100644 --- a/dir_6e63e3665115632dc5d61b2d6d6c3354.html +++ b/dir_6e63e3665115632dc5d61b2d6d6c3354.html @@ -203,7 +203,7 @@ diff --git a/dir_b3150c389b0f5b078392750f1ae70361.html b/dir_b3150c389b0f5b078392750f1ae70361.html index 428134db1..153261529 100644 --- a/dir_b3150c389b0f5b078392750f1ae70361.html +++ b/dir_b3150c389b0f5b078392750f1ae70361.html @@ -110,7 +110,7 @@ diff --git a/dir_c5954a04c87570f0664da134464d5428.html b/dir_c5954a04c87570f0664da134464d5428.html index d2b17b5f6..54abdb87e 100644 --- a/dir_c5954a04c87570f0664da134464d5428.html +++ b/dir_c5954a04c87570f0664da134464d5428.html @@ -134,7 +134,7 @@ diff --git a/dir_d44c64559bbebec7f509842c48db8b23.html b/dir_d44c64559bbebec7f509842c48db8b23.html index 50640da86..6d98f286b 100644 --- a/dir_d44c64559bbebec7f509842c48db8b23.html +++ b/dir_d44c64559bbebec7f509842c48db8b23.html @@ -117,7 +117,7 @@ diff --git a/dir_d7a554d3e09ed8456d56450fe8436947.html b/dir_d7a554d3e09ed8456d56450fe8436947.html index b8c3190f8..a05122342 100644 --- a/dir_d7a554d3e09ed8456d56450fe8436947.html +++ b/dir_d7a554d3e09ed8456d56450fe8436947.html @@ -116,7 +116,7 @@ diff --git a/files.html b/files.html index e95e2d13b..100729f42 100644 --- a/files.html +++ b/files.html @@ -173,7 +173,7 @@ diff --git a/flock-bones_8hpp.html b/flock-bones_8hpp.html index c4c513156..b4272fabd 100644 --- a/flock-bones_8hpp.html +++ b/flock-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/flock-bones_8hpp_source.html b/flock-bones_8hpp_source.html index d78ba60b5..f3b3b49ea 100644 --- a/flock-bones_8hpp_source.html +++ b/flock-bones_8hpp_source.html @@ -105,8 +105,8 @@
15 public:
16 
17  std::vector< Geese > dat;
-
18  size_t nfunctions = 0u;
-
19  bool initialized = false;
+
18  size_t nfunctions = 0u;
+
19  bool initialized = false;
20 
21  // Common components
22  std::mt19937 rengine;
@@ -133,58 +133,60 @@
57  std::vector< std::vector< double > > * get_stats_target();
58  PhyloModel * get_model();
59 
-
69  double likelihood_joint(
+
69  double likelihood_joint(
70  const std::vector< double > & par,
71  bool as_log = false,
-
72  bool use_reduced_sequence = true
-
73  );
-
74 
-
79  size_t nfuns() const noexcept;
-
80  size_t ntrees() const noexcept;
-
81  std::vector< size_t > nnodes() const noexcept;
-
82  std::vector< size_t > nleafs() const noexcept;
-
83  size_t nterms() const;
-
84  size_t support_size() const noexcept;
-
85  std::vector< std::string > colnames() const;
-
86  size_t parse_polytomies(
-
87  bool verb = true,
-
88  std::vector< size_t > * dist = nullptr
-
89  ) const noexcept;
-
90  void print() const;
-
92 
-
100  Geese * operator()(size_t i, bool check_bounds = true);
-
101 
-
102 };
-
103 
-
104 #endif
+
72  bool use_reduced_sequence = true,
+
73  BARRY_NCORES_ARG(=1)
+
74  );
+
75 
+
80  size_t nfuns() const noexcept;
+
81  size_t ntrees() const noexcept;
+
82  std::vector< size_t > nnodes() const noexcept;
+
83  std::vector< size_t > nleafs() const noexcept;
+
84  size_t nterms() const;
+
85  size_t support_size() const noexcept;
+
86  std::vector< std::string > colnames() const;
+
87  size_t parse_polytomies(
+
88  bool verb = true,
+
89  std::vector< size_t > * dist = nullptr
+
90  ) const noexcept;
+
91  void print() const;
+
93 
+
101  Geese * operator()(size_t i, bool check_bounds = true);
+
102 
+
103 };
+
104 
+
105 #endif
+
BARRY_NCORES_ARG
#define BARRY_NCORES_ARG(default)
Definition: barry-macros.hpp:15
Flock
A Flock is a group of Geese.
Definition: flock-bones.hpp:14
Flock::model
PhyloModel model
Definition: flock-bones.hpp:23
Flock::rengine
std::mt19937 rengine
Definition: flock-bones.hpp:22
-
Flock::colnames
std::vector< std::string > colnames() const
Definition: flock-meat.hpp:224
+
Flock::colnames
std::vector< std::string > colnames() const
Definition: flock-meat.hpp:225
Flock::get_counters
PhyloCounters * get_counters()
Definition: flock-meat.hpp:100
Flock::set_seed
void set_seed(const size_t &s)
Set the seed of the model.
Definition: flock-meat.hpp:42
Flock::get_stats_target
std::vector< std::vector< double > > * get_stats_target()
Definition: flock-meat.hpp:124
-
Flock::likelihood_joint
double likelihood_joint(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true)
Returns the joint likelihood of the model.
Definition: flock-meat.hpp:138
-
Flock::nfuns
size_t nfuns() const noexcept
Definition: flock-meat.hpp:167
-
Flock::parse_polytomies
size_t parse_polytomies(bool verb=true, std::vector< size_t > *dist=nullptr) const noexcept
Check polytomies and return the largest.
Definition: flock-meat.hpp:231
-
Flock::print
void print() const
Definition: flock-meat.hpp:258
+
Flock::nfuns
size_t nfuns() const noexcept
Definition: flock-meat.hpp:168
+
Flock::parse_polytomies
size_t parse_polytomies(bool verb=true, std::vector< size_t > *dist=nullptr) const noexcept
Check polytomies and return the largest.
Definition: flock-meat.hpp:232
+
Flock::print
void print() const
Definition: flock-meat.hpp:259
Flock::init
void init(size_t bar_width=BARRY_PROGRESS_BAR_WIDTH)
Definition: flock-meat.hpp:49
Flock::add_data
size_t add_data(std::vector< std::vector< size_t > > &annotations, std::vector< size_t > &geneid, std::vector< int > &parent, std::vector< bool > &duplication)
Add a tree to the flock.
Definition: flock-meat.hpp:6
-
Flock::nleafs
std::vector< size_t > nleafs() const noexcept
Definition: flock-meat.hpp:195
-
Flock::nterms
size_t nterms() const
Definition: flock-meat.hpp:209
+
Flock::nleafs
std::vector< size_t > nleafs() const noexcept
Definition: flock-meat.hpp:196
+
Flock::nterms
size_t nterms() const
Definition: flock-meat.hpp:210
+
Flock::likelihood_joint
double likelihood_joint(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true,)
Returns the joint likelihood of the model.
Definition: flock-meat.hpp:138
Flock::get_model
PhyloModel * get_model()
Definition: flock-meat.hpp:131
Flock::initialized
bool initialized
Definition: flock-bones.hpp:19
Flock::get_stats_support
std::vector< std::vector< double > > * get_stats_support()
Definition: flock-meat.hpp:117
-
Flock::support_size
size_t support_size() const noexcept
Definition: flock-meat.hpp:217
+
Flock::support_size
size_t support_size() const noexcept
Definition: flock-meat.hpp:218
Flock::get_support_fun
PhyloSupport * get_support_fun()
Definition: flock-meat.hpp:110
-
Flock::nnodes
std::vector< size_t > nnodes() const noexcept
Definition: flock-meat.hpp:181
-
Flock::ntrees
size_t ntrees() const noexcept
Definition: flock-meat.hpp:174
+
Flock::nnodes
std::vector< size_t > nnodes() const noexcept
Definition: flock-meat.hpp:182
+
Flock::ntrees
size_t ntrees() const noexcept
Definition: flock-meat.hpp:175
Flock::dat
std::vector< Geese > dat
Definition: flock-bones.hpp:17
Flock::nfunctions
size_t nfunctions
Definition: flock-bones.hpp:18
Geese
Annotated Phylo Model.
Definition: geese-bones.hpp:103
-
i
size_t i
Definition: counters-meat.hpp:83
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
PhyloCounters
barry::Counters< PhyloArray, PhyloCounterData > PhyloCounters
Definition: geese-types.hpp:106
PhyloModel
barry::Model< PhyloArray, PhyloCounterData, PhyloRuleData, PhyloRuleDynData > PhyloModel
Definition: geese-types.hpp:116
@@ -196,7 +198,7 @@ diff --git a/flock-meat_8hpp.html b/flock-meat_8hpp.html index 2c303bd4c..60e3c4bd8 100644 --- a/flock-meat_8hpp.html +++ b/flock-meat_8hpp.html @@ -113,7 +113,7 @@ diff --git a/flock-meat_8hpp_source.html b/flock-meat_8hpp_source.html index 53b1e4a2a..4075c7131 100644 --- a/flock-meat_8hpp_source.html +++ b/flock-meat_8hpp_source.html @@ -122,7 +122,7 @@
24  else
25  {
26 
-
27  if (annotations[0u].size() != nfuns())
+
27  if (annotations[0u].size() != nfuns())
28  throw std::length_error("The number of functions in the new set of annotations does not match that of the first Geese.");
29 
30  }
@@ -149,20 +149,20 @@
51 
52  // For some strange reason, pointing to model during
53  // the add_data function changes addresses once its out.
-
54  for (auto& a : dat)
+
54  for (auto& a : dat)
55  {
56 
-
57  if (a.delete_support)
-
58  delete a.model;
+
57  if (a.delete_support)
+
58  delete a.model;
59 
-
60  a.model = &model;
-
61  a.delete_support = false;
+
60  a.model = &model;
+
61  a.delete_support = false;
62 
-
63  if (a.delete_rengine)
-
64  delete a.rengine;
+
63  if (a.delete_rengine)
+
64  delete a.rengine;
65 
-
66  a.rengine = &rengine;
-
67  a.delete_rengine = false;
+
66  a.rengine = &rengine;
+
67  a.delete_rengine = false;
68 
69  }
70 
@@ -233,224 +233,224 @@
135 
136 }
137 
-
138 inline double Flock::likelihood_joint(
+
138 inline double Flock::likelihood_joint(
139  const std::vector< double > & par,
140  bool as_log,
-
141  bool use_reduced_sequence
-
142 )
-
143 {
-
144 
-
145  INITIALIZED()
-
146 
-
147  double ans = as_log ? 0.0: 1.0;
-
148 
-
149  if (as_log) {
-
150 
-
151  for (auto& d : this->dat)
-
152  ans += d.likelihood(par, as_log, use_reduced_sequence);
-
153 
-
154  }
-
155  else
-
156  {
-
157 
-
158  for (auto& d : this->dat)
-
159  ans *= d.likelihood(par, as_log, use_reduced_sequence);
-
160 
-
161  }
-
162 
-
163  return ans;
-
164 
-
165 }
-
166 
-
167 inline size_t Flock::nfuns() const noexcept
-
168 {
-
169 
-
170  return this->nfunctions;
-
171 
-
172 }
-
173 
-
174 inline size_t Flock::ntrees() const noexcept
-
175 {
-
176 
-
177  return this->dat.size();
-
178 
-
179 }
-
180 
-
181 inline std::vector< size_t > Flock::nnodes() const noexcept
-
182 {
-
183 
-
184  std::vector< size_t > res;
-
185 
-
186  res.reserve(this->ntrees());
-
187 
-
188  for (const auto& d : dat)
-
189  res.push_back(d.nnodes());
-
190 
-
191  return res;
-
192 
-
193 }
-
194 
-
195 inline std::vector< size_t > Flock::nleafs() const noexcept
-
196 {
-
197 
-
198  std::vector< size_t > res;
-
199 
-
200  res.reserve(this->ntrees());
-
201 
-
202  for (const auto& d : dat)
-
203  res.push_back(d.nleafs());
-
204 
-
205  return res;
-
206 
-
207 }
-
208 
-
209 inline size_t Flock::nterms() const
-
210 {
-
211 
-
212  INITIALIZED()
-
213  return model.nterms() + this->nfuns();
-
214 
-
215 }
-
216 
-
217 inline size_t Flock::support_size() const noexcept
-
218 {
-
219 
-
220  return this->model.support_size();
-
221 
-
222 }
-
223 
-
224 inline std::vector< std::string > Flock::colnames() const
-
225 {
-
226 
-
227  return this->model.colnames();
-
228 
-
229 }
-
230 
-
231 inline size_t Flock::parse_polytomies(
-
232  bool verb,
-
233  std::vector< size_t > * dist
-
234 ) const noexcept
-
235 {
-
236 
-
237  size_t ans = 0;
-
238 
-
239  int i = 0;
-
240 
-
241  for (const auto & d : dat)
-
242  {
-
243 
-
244  if (verb)
-
245  printf_barry("Checking tree %i\n", i);
-
246 
-
247  size_t tmp = d.parse_polytomies(verb, dist);
-
248 
-
249  if (tmp > ans)
-
250  ans = tmp;
-
251 
-
252  }
-
253 
-
254  return ans;
-
255 
-
256 }
-
257 
-
258 inline void Flock::print() const
-
259 {
-
260 
-
261  // Information relevant to print:
-
262  // - Number of phylogenies
-
263  // - Number of functions
-
264  // - Total number of annotations.
-
265 
-
266  // Computing total number of annotations and events
-
267  size_t nzeros = 0u;
-
268 
-
269  size_t nones = 0u;
-
270 
-
271  size_t ndpl = 0u;
-
272 
-
273  size_t nspe = 0u;
-
274 
-
275  for (const auto & tree : this->dat)
-
276  {
-
277  nzeros += tree.n_zeros;
-
278  nones += tree.n_ones;
-
279  ndpl += tree.n_dupl_events;
-
280  nspe += tree.n_spec_events;
-
281 
-
282  }
-
283 
-
284  printf_barry("FLOCK (GROUP OF GEESE)\nINFO ABOUT THE PHYLOGENIES\n");
-
285 
-
286  printf_barry("# of phylogenies : %li\n", ntrees());
-
287 
-
288  printf_barry("# of functions : %li\n", nfuns());
-
289 
-
290  printf_barry("# of ann. [zeros; ones] : [%li; %li]\n", nzeros, nones);
-
291 
-
292  printf_barry("# of events [dupl; spec] : [%li; %li]\n", ndpl, nspe);
-
293 
-
294  printf_barry("Largest polytomy : %li\n", parse_polytomies(false));
-
295 
-
296  printf_barry("\nINFO ABOUT THE SUPPORT\n");
-
297 
-
298  return this->model.print();
-
299 
-
300 }
-
301 
-
302 inline Geese* Flock::operator()(size_t i, bool check_bounds)
-
303 {
-
304 
-
305  if (check_bounds && i >= ntrees())
-
306  throw std::logic_error("Geese not found in the flock (out of range).");
-
307 
-
308  return &dat[i];
-
309 
-
310 }
-
311 
-
312 #endif
+
141  bool use_reduced_sequence,
+
142  BARRY_NCORES_ARG()
+
143 )
+
144 {
+
145 
+
146  INITIALIZED()
+
147 
+
148  double ans = as_log ? 0.0: 1.0;
+
149 
+
150  if (as_log) {
+
151 
+
152  for (auto& d : this->dat)
+
153  ans += d.likelihood(par, as_log, use_reduced_sequence);
+
154 
+
155  }
+
156  else
+
157  {
+
158 
+
159  for (auto& d : this->dat)
+
160  ans *= d.likelihood(par, as_log, use_reduced_sequence);
+
161 
+
162  }
+
163 
+
164  return ans;
+
165 
+
166 }
+
167 
+
168 inline size_t Flock::nfuns() const noexcept
+
169 {
+
170 
+
171  return this->nfunctions;
+
172 
+
173 }
+
174 
+
175 inline size_t Flock::ntrees() const noexcept
+
176 {
+
177 
+
178  return this->dat.size();
+
179 
+
180 }
+
181 
+
182 inline std::vector< size_t > Flock::nnodes() const noexcept
+
183 {
+
184 
+
185  std::vector< size_t > res;
+
186 
+
187  res.reserve(this->ntrees());
+
188 
+
189  for (const auto& d : dat)
+
190  res.push_back(d.nnodes());
+
191 
+
192  return res;
+
193 
+
194 }
+
195 
+
196 inline std::vector< size_t > Flock::nleafs() const noexcept
+
197 {
+
198 
+
199  std::vector< size_t > res;
+
200 
+
201  res.reserve(this->ntrees());
+
202 
+
203  for (const auto& d : dat)
+
204  res.push_back(d.nleafs());
+
205 
+
206  return res;
+
207 
+
208 }
+
209 
+
210 inline size_t Flock::nterms() const
+
211 {
+
212 
+
213  INITIALIZED()
+
214  return model.nterms() + this->nfuns();
+
215 
+
216 }
+
217 
+
218 inline size_t Flock::support_size() const noexcept
+
219 {
+
220 
+
221  return this->model.support_size();
+
222 
+
223 }
+
224 
+
225 inline std::vector< std::string > Flock::colnames() const
+
226 {
+
227 
+
228  return this->model.colnames();
+
229 
+
230 }
+
231 
+
232 inline size_t Flock::parse_polytomies(
+
233  bool verb,
+
234  std::vector< size_t > * dist
+
235 ) const noexcept
+
236 {
+
237 
+
238  size_t ans = 0;
+
239 
+
240  int i = 0;
+
241 
+
242  for (const auto & d : dat)
+
243  {
+
244 
+
245  if (verb)
+
246  printf_barry("Checking tree %i\n", i);
+
247 
+
248  size_t tmp = d.parse_polytomies(verb, dist);
+
249 
+
250  if (tmp > ans)
+
251  ans = tmp;
+
252 
+
253  }
+
254 
+
255  return ans;
+
256 
+
257 }
+
258 
+
259 inline void Flock::print() const
+
260 {
+
261 
+
262  // Information relevant to print:
+
263  // - Number of phylogenies
+
264  // - Number of functions
+
265  // - Total number of annotations.
+
266 
+
267  // Computing total number of annotations and events
+
268  size_t nzeros = 0u;
+
269 
+
270  size_t nones = 0u;
+
271 
+
272  size_t ndpl = 0u;
+
273 
+
274  size_t nspe = 0u;
+
275 
+
276  for (const auto & tree : this->dat)
+
277  {
+
278  nzeros += tree.n_zeros;
+
279  nones += tree.n_ones;
+
280  ndpl += tree.n_dupl_events;
+
281  nspe += tree.n_spec_events;
+
282 
+
283  }
+
284 
+
285  printf_barry("FLOCK (GROUP OF GEESE)\nINFO ABOUT THE PHYLOGENIES\n");
+
286 
+
287  printf_barry("# of phylogenies : %li\n", ntrees());
+
288 
+
289  printf_barry("# of functions : %li\n", nfuns());
+
290 
+
291  printf_barry("# of ann. [zeros; ones] : [%li; %li]\n", nzeros, nones);
+
292 
+
293  printf_barry("# of events [dupl; spec] : [%li; %li]\n", ndpl, nspe);
+
294 
+
295  printf_barry("Largest polytomy : %li\n", parse_polytomies(false));
+
296 
+
297  printf_barry("\nINFO ABOUT THE SUPPORT\n");
+
298 
+
299  return this->model.print();
+
300 
+
301 }
+
302 
+
303 inline Geese* Flock::operator()(size_t i, bool check_bounds)
+
304 {
+
305 
+
306  if (check_bounds && i >= ntrees())
+
307  throw std::logic_error("Geese not found in the flock (out of range).");
+
308 
+
309  return &dat[i];
+
310 
+
311 }
+
312 
+
313 #endif
printf_barry
#define printf_barry
Definition: barry-configuration.hpp:51
-
Flock::operator()
Geese * operator()(size_t i, bool check_bounds=true)
Access the i-th geese element.
Definition: flock-meat.hpp:302
+
BARRY_NCORES_ARG
#define BARRY_NCORES_ARG(default)
Definition: barry-macros.hpp:15
+
Flock::operator()
Geese * operator()(size_t i, bool check_bounds=true)
Access the i-th geese element.
Definition: flock-meat.hpp:303
Flock::model
PhyloModel model
Definition: flock-bones.hpp:23
Flock::rengine
std::mt19937 rengine
Definition: flock-bones.hpp:22
-
Flock::colnames
std::vector< std::string > colnames() const
Definition: flock-meat.hpp:224
+
Flock::colnames
std::vector< std::string > colnames() const
Definition: flock-meat.hpp:225
Flock::get_counters
PhyloCounters * get_counters()
Definition: flock-meat.hpp:100
Flock::set_seed
void set_seed(const size_t &s)
Set the seed of the model.
Definition: flock-meat.hpp:42
Flock::get_stats_target
std::vector< std::vector< double > > * get_stats_target()
Definition: flock-meat.hpp:124
-
Flock::likelihood_joint
double likelihood_joint(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true)
Returns the joint likelihood of the model.
Definition: flock-meat.hpp:138
-
Flock::nfuns
size_t nfuns() const noexcept
Definition: flock-meat.hpp:167
-
Flock::parse_polytomies
size_t parse_polytomies(bool verb=true, std::vector< size_t > *dist=nullptr) const noexcept
Check polytomies and return the largest.
Definition: flock-meat.hpp:231
-
Flock::print
void print() const
Definition: flock-meat.hpp:258
+
Flock::nfuns
size_t nfuns() const noexcept
Definition: flock-meat.hpp:168
+
Flock::parse_polytomies
size_t parse_polytomies(bool verb=true, std::vector< size_t > *dist=nullptr) const noexcept
Check polytomies and return the largest.
Definition: flock-meat.hpp:232
+
Flock::print
void print() const
Definition: flock-meat.hpp:259
Flock::init
void init(size_t bar_width=BARRY_PROGRESS_BAR_WIDTH)
Definition: flock-meat.hpp:49
Flock::add_data
size_t add_data(std::vector< std::vector< size_t > > &annotations, std::vector< size_t > &geneid, std::vector< int > &parent, std::vector< bool > &duplication)
Add a tree to the flock.
Definition: flock-meat.hpp:6
-
Flock::nleafs
std::vector< size_t > nleafs() const noexcept
Definition: flock-meat.hpp:195
-
Flock::nterms
size_t nterms() const
Definition: flock-meat.hpp:209
+
Flock::nleafs
std::vector< size_t > nleafs() const noexcept
Definition: flock-meat.hpp:196
+
Flock::nterms
size_t nterms() const
Definition: flock-meat.hpp:210
+
Flock::likelihood_joint
double likelihood_joint(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true,)
Returns the joint likelihood of the model.
Definition: flock-meat.hpp:138
Flock::get_model
PhyloModel * get_model()
Definition: flock-meat.hpp:131
Flock::initialized
bool initialized
Definition: flock-bones.hpp:19
Flock::get_stats_support
std::vector< std::vector< double > > * get_stats_support()
Definition: flock-meat.hpp:117
-
Flock::support_size
size_t support_size() const noexcept
Definition: flock-meat.hpp:217
+
Flock::support_size
size_t support_size() const noexcept
Definition: flock-meat.hpp:218
Flock::get_support_fun
PhyloSupport * get_support_fun()
Definition: flock-meat.hpp:110
-
Flock::nnodes
std::vector< size_t > nnodes() const noexcept
Definition: flock-meat.hpp:181
-
Flock::ntrees
size_t ntrees() const noexcept
Definition: flock-meat.hpp:174
+
Flock::nnodes
std::vector< size_t > nnodes() const noexcept
Definition: flock-meat.hpp:182
+
Flock::ntrees
size_t ntrees() const noexcept
Definition: flock-meat.hpp:175
Flock::dat
std::vector< Geese > dat
Definition: flock-bones.hpp:17
Flock::nfunctions
size_t nfunctions
Definition: flock-bones.hpp:18
Geese
Annotated Phylo Model.
Definition: geese-bones.hpp:103
res
return res
Definition: counters-meat.hpp:265
-
i
size_t i
Definition: counters-meat.hpp:83
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
INITIALIZED
#define INITIALIZED()
Definition: geese-bones.hpp:22
keygen_full
std::vector< double > keygen_full(const PhyloArray &array, const PhyloCounterData *d)
Definition: geese-bones.hpp:36
PhyloCounters
barry::Counters< PhyloArray, PhyloCounterData > PhyloCounters
Definition: geese-types.hpp:106
PhyloModel
barry::Model< PhyloArray, PhyloCounterData, PhyloRuleData, PhyloRuleDynData > PhyloModel
Definition: geese-types.hpp:116
PhyloSupport
barry::Support< PhyloArray, PhyloCounterData, PhyloRuleData, PhyloRuleDynData > PhyloSupport
Definition: geese-types.hpp:114
-
a
size_t a
Definition: model-meat.hpp:1287
-
size
return arrays2support size() - 1u
diff --git a/formula_8hpp.html b/formula_8hpp.html index 2a0ca7e2f..f384fc4df 100644 --- a/formula_8hpp.html +++ b/formula_8hpp.html @@ -206,7 +206,7 @@

Transition effects

diff --git a/formula_8hpp_source.html b/formula_8hpp_source.html index 8c174b438..5c561a96c 100644 --- a/formula_8hpp_source.html +++ b/formula_8hpp_source.html @@ -140,29 +140,29 @@
85 
86  auto iter = std::sregex_iterator(formula.begin(), formula.end(), pattern);
87 
-
88  for (auto i = iter; i != empty; ++i)
+
88  for (auto i = iter; i != empty; ++i)
89  {
90 
91  // Baseline position
-
92  size_t current_location = i->position(0u);
+
92  size_t current_location = i->position(0u);
93 
94  // First value true/false
95  bool is_positive;
-
96  if (i->operator[](1u).str() == "")
+
96  if (i->operator[](1u).str() == "")
97  is_positive = true;
-
98  else if (i->operator[](1u).str() == "0")
+
98  else if (i->operator[](1u).str() == "0")
99  is_positive = false;
100  else
101  throw std::logic_error("The number preceding y should be either none or zero.");
102 
103  // Variable position
-
104  size_t y_col = std::stoul(i->operator[](2u).str());
+
104  size_t y_col = std::stoul(i->operator[](2u).str());
105  if (y_col >= y_ncol)
106  throw std::logic_error("The proposed column is out of range.");
107 
108  // Time location
109  size_t y_row;
-
110  std::string tmp_str = i->operator[](4u).str();
+
110  std::string tmp_str = i->operator[](4u).str();
111  if (m_order > 1)
112  {
113  // If missing, we replace with the location
@@ -193,7 +193,7 @@
138 
139  if (selected[y_col * (m_order + 1) + y_row])
140  throw std::logic_error(
-
141  "The term " + i->str() + " shows more than once in the formula.");
+
141  "The term " + i->str() + " shows more than once in the formula.");
142 
143  // Only the end of the chain can be located at position after the
144  // arrow
@@ -223,30 +223,30 @@
168 
169  auto iter = std::sregex_iterator(formula.begin(), formula.end(), pattern);
170 
-
171  for (auto i = iter; i != empty; ++i)
+
171  for (auto i = iter; i != empty; ++i)
172  {
173 
174  // First value true/false
175  bool is_positive;
-
176  if (i->operator[](1u).str() == "")
+
176  if (i->operator[](1u).str() == "")
177  is_positive = true;
-
178  else if (i->operator[](1u).str() == "0")
+
178  else if (i->operator[](1u).str() == "0")
179  is_positive = false;
180  else
181  throw std::logic_error("The number preceding y should be either none or zero.");
182 
183  // Variable position
-
184  size_t y_col = std::stoul(i->operator[](2u).str());
+
184  size_t y_col = std::stoul(i->operator[](2u).str());
185  if (y_col >= y_ncol)
186  throw std::logic_error("The proposed column is out of range.");
187 
188  // Time location
189  size_t y_row;
-
190  if (i->operator[](4u).str() == "") // Assume is the last
+
190  if (i->operator[](4u).str() == "") // Assume is the last
191  y_row = m_order;
192  else {
193 
-
194  y_row = std::stoul(i->operator[](4u).str());
+
194  y_row = std::stoul(i->operator[](4u).str());
195 
196  if (y_row != m_order)
197  throw std::logic_error(
@@ -258,7 +258,7 @@
203 
204  if (selected[y_col * (m_order + 1) + y_row])
205  throw std::logic_error(
-
206  "The term " + i->str() + " shows more than once in the formula.");
+
206  "The term " + i->str() + " shows more than once in the formula.");
207 
208  selected[y_col * (m_order + 1) + y_row] = true;
209 
@@ -280,7 +280,7 @@
225 }
226 #endif
227 
-
i
size_t i
Definition: counters-meat.hpp:83
+
i
size_t i
Definition: counters-meat.hpp:83
defm_motif_parser
void defm_motif_parser(std::string formula, std::vector< size_t > &locations, std::vector< bool > &signs, size_t m_order, size_t y_ncol)
Parses a motif formula.
Definition: formula.hpp:46
@@ -288,7 +288,7 @@ diff --git a/freqtable_8hpp.html b/freqtable_8hpp.html index d400914ca..7b02628c4 100644 --- a/freqtable_8hpp.html +++ b/freqtable_8hpp.html @@ -122,7 +122,7 @@ diff --git a/freqtable_8hpp_source.html b/freqtable_8hpp_source.html index d6f4006f5..0f651126b 100644 --- a/freqtable_8hpp_source.html +++ b/freqtable_8hpp_source.html @@ -145,7 +145,7 @@
69  else
70  h = *h_precomp;
71 
-
72  if (k == 0u)
+
72  if (k == 0u)
73  {
74 
75  index.insert({h, 0u});
@@ -153,7 +153,7 @@
77  data.push_back(1.0);
78  data.insert(data.end(), x.begin(), x.end());
79 
-
80  k = x.size();
+
80  k = x.size();
81  n++;
82 
83  return h;
@@ -163,7 +163,7 @@
87  {
88 
89 
-
90  if (x.size() != k)
+
90  if (x.size() != k)
91  throw std::length_error(
92  "The value you are trying to add doesn't have the same lenght used in the database."
93  );
@@ -219,18 +219,18 @@
143 
144  ans.reserve(index.size());
145 
-
146  for (size_t i = 0u; i < n; ++i)
+
146  for (size_t i = 0u; i < n; ++i)
147  {
148 
-
149  std::vector< double > tmp(k, 0.0);
+
149  std::vector< double > tmp(k, 0.0);
150 
-
151  for (size_t j = 1u; j < (k + 1u); ++j)
-
152  tmp[j - 1u] = data[i * (k + 1) + j];
+
151  for (size_t j = 1u; j < (k + 1u); ++j)
+
152  tmp[j - 1u] = data[i * (k + 1) + j];
153 
154  ans.push_back(
155  std::make_pair<std::vector<double>,size_t>(
156  std::move(tmp),
-
157  static_cast<size_t>(data[i * (k + 1u)])
+
157  static_cast<size_t>(data[i * (k + 1u)])
158  )
159  );
160 
@@ -248,7 +248,7 @@
172  data.clear();
173 
174  n = 0u;
-
175  k = 0u;
+
175  k = 0u;
176 
177  return;
178 
@@ -262,8 +262,8 @@
186 {
187 
188  // Figuring out the max size
-
189  auto nk = std::min(BARRY_MAX_NUM_ELEMENTS, n * k);
-
190  n = nk / k;
+
189  auto nk = std::min(BARRY_MAX_NUM_ELEMENTS, n * k);
+
190  n = nk / k;
191  data.reserve(nk);
192  index.reserve(n);
193 
@@ -284,16 +284,16 @@
208 
209  printf_barry("%7s | %s\n", "Counts", "Stats");
210 
-
211  for (size_t i = 0u; i < n; ++i)
+
211  for (size_t i = 0u; i < n; ++i)
212  {
213 
-
214  printf_barry("%7i | ", static_cast<int>(data[i * (k + 1u)]));
+
214  printf_barry("%7i | ", static_cast<int>(data[i * (k + 1u)]));
215 
-
216  for (size_t j = 1u; j < (k + 1u); ++j)
-
217  printf_barry(" %.2f", data[i * (k + 1) + j]);
+
216  for (size_t j = 1u; j < (k + 1u); ++j)
+
217  printf_barry(" %.2f", data[i * (k + 1) + j]);
218  printf_barry("\n");
219 
-
220  grand_total += static_cast<size_t>(data[i * (k + 1u)]);
+
220  grand_total += static_cast<size_t>(data[i * (k + 1u)]);
221 
222  }
223 
@@ -322,8 +322,8 @@
246  // 0x9e3779b9 is a 32 bit constant (comes from the golden ratio)
247  // << is a shift operator, something like lhs * 2^(rhs)
248  if (x.size() > 1u)
-
249  for (size_t i = 1u; i < x.size(); ++i)
-
250  hash ^= hasher(x[i]) + 0x9e3779b9 + (hash<<6) + (hash>>2);
+
249  for (size_t i = 1u; i < x.size(); ++i)
+
250  hash ^= hasher(x[i]) + 0x9e3779b9 + (hash<<6) + (hash>>2);
251 
252  return hash;
253 
@@ -345,11 +345,10 @@
FreqTable::add
size_t add(const std::vector< T > &x, size_t *h_precomp)
Definition: freqtable.hpp:59
FreqTable::size
size_t size() const noexcept
Number of unique elements in the table. (.
Definition: freqtable.hpp:231
data
Data_Type &&counter_ data(std::move(counter_.data))
-
i
size_t i
Definition: counters-meat.hpp:83
hasher
Data_Type hasher(counter_.hasher)
Definition: counters-meat.hpp:141
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
-
k
size_t k
Definition: model-meat.hpp:1294
Counts_type
std::vector< std::pair< std::vector< double >, size_t > > Counts_type
Definition: typedefs.hpp:51
@@ -357,7 +356,7 @@ diff --git a/functions.html b/functions.html index 1854d08ab..b899defa6 100644 --- a/functions.html +++ b/functions.html @@ -159,7 +159,7 @@

- a -

 - +
 
std::vector< double > keygen_full (const PhyloArray &array, const PhyloCounterData *d)
 
bool vec_diff (const std::vector< size_t > &s, const std::vector< size_t > &a)
bool vec_diff (const std::vector< size_t > &s, const std::vector< size_t > &a)
 

Macro Definition Documentation

@@ -291,7 +291,7 @@

  • include
  • barry
  • models
  • geese
  • geese-bones.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
diff --git a/geese-bones_8hpp_source.html b/geese-bones_8hpp_source.html index 64f5e8f53..700ab0cfe 100644 --- a/geese-bones_8hpp_source.html +++ b/geese-bones_8hpp_source.html @@ -110,8 +110,8 @@
12  std::vector< Ta > ans;
13  ans.reserve(x.size());
14 
-
15  for (auto i = x.begin(); i != x.end(); ++i)
-
16  ans.push_back(static_cast< Ta >(*i));
+
15  for (auto i = x.begin(); i != x.end(); ++i)
+
16  ans.push_back(static_cast< Ta >(*i));
17 
18  return ans;
19 
@@ -123,7 +123,7 @@
25 // The same need to be locked
26 RULE_FUNCTION(rule_empty_free) {
27 
-
28  return Array(i, j) == 9u;
+
28  return Array(i, j) == 9u;
29 
30 }
31 
@@ -146,8 +146,8 @@
48 
49  // State of the parent
50  double pow10 = 1.0;
-
51  for (bool i : array.D_ptr()->states) {
-
52  dat[1u] += (i ? 1.0 : 0.0) * pow10;
+
51  for (bool i : array.D_ptr()->states) {
+
52  dat[1u] += (i ? 1.0 : 0.0) * pow10;
53  pow10 *= 10.0;
54  }
55 
@@ -157,11 +157,11 @@
59 
60 inline bool vec_diff(
61  const std::vector< size_t > & s,
-
62  const std::vector< size_t > & a
+
62  const std::vector< size_t > & a
63 ) {
64 
-
65  for (size_t i = 0u; i < a.size(); ++i)
-
66  if ((a[i] != 9u) && (a[i] != s[i]))
+
65  for (size_t i = 0u; i < a.size(); ++i)
+
66  if ((a[i] != 9u) && (a[i] != s[i]))
67  return true;
68 
69  return false;
@@ -246,88 +246,90 @@
212  void calc_sequence(Node * n = nullptr);
213  void calc_reduced_sequence();
214 
-
215  double likelihood(
+
215  double likelihood(
216  const std::vector< double > & par,
217  bool as_log = false,
-
218  bool use_reduced_sequence = true
-
219  );
-
220 
-
221  double likelihood_exhaust(const std::vector< double > & par);
-
222 
-
223  std::vector< double > get_probabilities() const;
-
224 
-
225  void set_seed(const size_t & s);
-
226  std::vector< std::vector< size_t > > simulate(
-
227  const std::vector< double > & par
-
228  );
-
229 
-
236  size_t nfuns() const noexcept;
-
237  size_t nnodes() const noexcept;
-
238  size_t nleafs() const noexcept;
-
239  size_t nterms() const;
-
240  size_t support_size() const noexcept;
-
241  std::vector< size_t > nannotations() const noexcept;
-
242  std::vector< std::string > colnames() const;
-
243  size_t parse_polytomies(
-
244  bool verb = true,
-
245  std::vector< size_t > * dist = nullptr
-
246  ) const noexcept;
-
247 
-
249 
-
250  std::vector< std::vector<double> > observed_counts();
-
251  void print_observed_counts();
-
252 
-
256  void print() const;
-
257  void print_nodes() const;
-
258 
+
218  bool use_reduced_sequence = true,
+
219  BARRY_NCORES_ARG(= 1)
+
220  );
+
221 
+
222  double likelihood_exhaust(const std::vector< double > & par);
+
223 
+
224  std::vector< double > get_probabilities() const;
+
225 
+
226  void set_seed(const size_t & s);
+
227  std::vector< std::vector< size_t > > simulate(
+
228  const std::vector< double > & par
+
229  );
+
230 
+
237  size_t nfuns() const noexcept;
+
238  size_t nnodes() const noexcept;
+
239  size_t nleafs() const noexcept;
+
240  size_t nterms() const;
+
241  size_t support_size() const noexcept;
+
242  std::vector< size_t > nannotations() const noexcept;
+
243  std::vector< std::string > colnames() const;
+
244  size_t parse_polytomies(
+
245  bool verb = true,
+
246  std::vector< size_t > * dist = nullptr
+
247  ) const noexcept;
+
248 
+
250 
+
251  std::vector< std::vector<double> > observed_counts();
+
252  void print_observed_counts();
+
253 
+
257  void print() const;
+
258  void print_nodes() const;
259 
-
281  std::vector< std::vector< double > > predict(
-
282  const std::vector< double > & par,
-
283  std::vector< std::vector< double > > * res_prob = nullptr,
-
284  bool leave_one_out = false,
-
285  bool only_annotated = false,
-
286  bool use_reduced_sequence = true
-
287  );
-
288 
-
289  std::vector< std::vector<double> > predict_backend(
-
290  const std::vector< double > & par,
-
291  bool use_reduced_sequence,
-
292  const std::vector< size_t > & preorder
-
293  );
-
294 
-
295  std::vector< std::vector< double > > predict_exhaust_backend(
-
296  const std::vector< double > & par,
-
297  const std::vector< size_t > & preorder
-
298  );
-
299 
-
300  std::vector< std::vector< double > > predict_exhaust(
-
301  const std::vector< double > & par
-
302  );
-
303 
-
304  std::vector< std::vector< double > > predict_sim(
-
305  const std::vector< double > & par,
-
306  bool only_annotated = false,
-
307  size_t nsims = 10000u
-
308  );
-
310 
-
311  void init_node(Node & n);
-
312  void update_annotations(
-
313  size_t nodeid,
-
314  std::vector< size_t > newann
-
315  );
-
316 
-
329  std::mt19937 * get_rengine();
-
330  PhyloCounters * get_counters();
-
331  PhyloModel * get_model();
-
332  PhyloSupport * get_support_fun();
-
334 
-
343  std::vector< std::vector< bool > > get_states() const;
-
344  std::vector< size_t > get_annotated_nodes() const;
-
345  std::vector< size_t > get_annotations() const;
-
346 
-
347 };
-
348 
-
349 #endif
+
260 
+
282  std::vector< std::vector< double > > predict(
+
283  const std::vector< double > & par,
+
284  std::vector< std::vector< double > > * res_prob = nullptr,
+
285  bool leave_one_out = false,
+
286  bool only_annotated = false,
+
287  bool use_reduced_sequence = true
+
288  );
+
289 
+
290  std::vector< std::vector<double> > predict_backend(
+
291  const std::vector< double > & par,
+
292  bool use_reduced_sequence,
+
293  const std::vector< size_t > & preorder
+
294  );
+
295 
+
296  std::vector< std::vector< double > > predict_exhaust_backend(
+
297  const std::vector< double > & par,
+
298  const std::vector< size_t > & preorder
+
299  );
+
300 
+
301  std::vector< std::vector< double > > predict_exhaust(
+
302  const std::vector< double > & par
+
303  );
+
304 
+
305  std::vector< std::vector< double > > predict_sim(
+
306  const std::vector< double > & par,
+
307  bool only_annotated = false,
+
308  size_t nsims = 10000u
+
309  );
+
311 
+
312  void init_node(Node & n);
+
313  void update_annotations(
+
314  size_t nodeid,
+
315  std::vector< size_t > newann
+
316  );
+
317 
+
330  std::mt19937 * get_rengine();
+
331  PhyloCounters * get_counters();
+
332  PhyloModel * get_model();
+
333  PhyloSupport * get_support_fun();
+
335 
+
344  std::vector< std::vector< bool > > get_states() const;
+
345  std::vector< size_t > get_annotated_nodes() const;
+
346  std::vector< size_t > get_annotations() const;
+
347 
+
348 };
+
349 
+
350 #endif
+
BARRY_NCORES_ARG
#define BARRY_NCORES_ARG(default)
Definition: barry-macros.hpp:15
Flock
A Flock is a group of Geese.
Definition: flock-bones.hpp:14
Geese
Annotated Phylo Model.
Definition: geese-bones.hpp:103
Geese::reduced_sequence
std::vector< size_t > reduced_sequence
Definition: geese-bones.hpp:138
@@ -351,10 +353,10 @@
Geese::colnames
std::vector< std::string > colnames() const
Names of the terms in the model.
Definition: geese-meat.hpp:480
Geese::init
void init(size_t bar_width=BARRY_PROGRESS_BAR_WIDTH)
Definition: geese-meat.hpp:131
Geese::nnodes
size_t nnodes() const noexcept
Number of nodes (interior + leaf)
Definition: geese-meat.hpp:434
+
Geese::likelihood
double likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true,)
Definition: geese-meat-likelihood.hpp:6
Geese::operator=
Geese & operator=(Geese &&model_) noexcept=delete
Geese::get_probabilities
std::vector< double > get_probabilities() const
Definition: geese-meat.hpp:406
Geese::predict_sim
std::vector< std::vector< double > > predict_sim(const std::vector< double > &par, bool only_annotated=false, size_t nsims=10000u)
Definition: geese-meat-predict_sim.hpp:6
-
Geese::likelihood
double likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true)
Definition: geese-meat-likelihood.hpp:6
Geese::get_model
PhyloModel * get_model()
Definition: geese-meat.hpp:757
Geese::observed_counts
std::vector< std::vector< double > > observed_counts()
Definition: geese-meat.hpp:522
Geese::operator=
Geese & operator=(const Geese &model_)=delete
@@ -384,8 +386,8 @@
Geese::etype_default
static const size_t etype_default
Definition: geese-bones.hpp:156
Node
A single node for the model.
Definition: geese-node-bones.hpp:11
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
RULE_FUNCTION
RULE_FUNCTION(rule_empty_free)
Definition: geese-bones.hpp:26
vector_caster
std::vector< Ta > vector_caster(const std::vector< Tb > &x)
Definition: geese-bones.hpp:10
@@ -395,7 +397,6 @@
PhyloModel
barry::Model< PhyloArray, PhyloCounterData, PhyloRuleData, PhyloRuleDynData > PhyloModel
Definition: geese-types.hpp:116
PhyloArray
barry::BArrayDense< size_t, NodeData > PhyloArray
Definition: geese-types.hpp:104
PhyloSupport
barry::Support< PhyloArray, PhyloCounterData, PhyloRuleData, PhyloRuleDynData > PhyloSupport
Definition: geese-types.hpp:114
-
a
size_t a
Definition: model-meat.hpp:1287
BARRY_PROGRESS_BAR_WIDTH
#define BARRY_PROGRESS_BAR_WIDTH
Definition: progress.hpp:5
@@ -403,7 +404,7 @@ diff --git a/geese-meat-constructors_8hpp.html b/geese-meat-constructors_8hpp.html index b38945aeb..4795aac54 100644 --- a/geese-meat-constructors_8hpp.html +++ b/geese-meat-constructors_8hpp.html @@ -113,7 +113,7 @@ diff --git a/geese-meat-constructors_8hpp_source.html b/geese-meat-constructors_8hpp_source.html index 83372a763..1047316c1 100644 --- a/geese-meat-constructors_8hpp_source.html +++ b/geese-meat-constructors_8hpp_source.html @@ -149,29 +149,29 @@
51  }
52 
53  // Grouping up the data by parents -----------------------------------------
-
54  for (size_t i = 0u; i < geneid.size(); ++i)
+
54  for (size_t i = 0u; i < geneid.size(); ++i)
55  {
56 
57  // Temp vector with the annotations
-
58  std::vector< size_t > & funs(annotations.at(i));
+
58  std::vector< size_t > & funs(annotations.at(i));
59 
60  // Case 1: Not the root node, and the parent does not exists
-
61  if ((parent.at(i) >= 0) && (nodes.find(parent.at(i)) == nodes.end()))
+
61  if ((parent.at(i) >= 0) && (nodes.find(parent.at(i)) == nodes.end()))
62  {
63 
64  // Adding parent
65  auto key_par = nodes.insert({
-
66  parent.at(i),
-
67  Node(parent.at(i), std::numeric_limits< size_t >::max(), true)
+
66  parent.at(i),
+
67  Node(parent.at(i), std::numeric_limits< size_t >::max(), true)
68  });
69 
70  // Case 1a: i does not exists
-
71  if (nodes.find(geneid.at(i)) == nodes.end())
+
71  if (nodes.find(geneid.at(i)) == nodes.end())
72  {
73 
74  auto key_off = nodes.insert({
-
75  geneid.at(i),
-
76  Node(geneid.at(i), i, funs, duplication.at(i))
+
75  geneid.at(i),
+
76  Node(geneid.at(i), i, funs, duplication.at(i))
77  });
78 
79  // Adding the offspring to the parent
@@ -185,14 +185,14 @@
87  } else { // Case 1b: i does exists (we saw it earlier)
88 
89  // We just need to make sure that we update it!
-
90  nodes[geneid.at(i)].duplication = duplication.at(i);
-
91  nodes[geneid.at(i)].annotations = funs;
-
92  nodes[geneid.at(i)].parent = &nodes[parent.at(i)];
-
93  nodes[geneid.at(i)].ord = i;
-
94  nodes[geneid.at(i)].id = geneid.at(i);
+
90  nodes[geneid.at(i)].duplication = duplication.at(i);
+
91  nodes[geneid.at(i)].annotations = funs;
+
92  nodes[geneid.at(i)].parent = &nodes[parent.at(i)];
+
93  nodes[geneid.at(i)].ord = i;
+
94  nodes[geneid.at(i)].id = geneid.at(i);
95 
-
96  nodes[parent.at(i)].offspring.push_back(
-
97  &nodes[geneid.at(i)]
+
96  nodes[parent.at(i)].offspring.push_back(
+
97  &nodes[geneid.at(i)]
98  );
99 
100  }
@@ -200,42 +200,42 @@
102  } else { // Case 2: Either this is the root, or the parent does exists
103 
104  // Case 2a: i does not exists (but its parent does)
-
105  if (nodes.find(geneid.at(i)) == nodes.end())
+
105  if (nodes.find(geneid.at(i)) == nodes.end())
106  {
107 
108  // Adding i
109  auto key_off = nodes.insert({
-
110  geneid.at(i),
-
111  Node(geneid.at(i), i, funs, duplication.at(i))
+
110  geneid.at(i),
+
111  Node(geneid.at(i), i, funs, duplication.at(i))
112  });
113 
114  // We only do this if this is not the root
-
115  if (parent.at(i) >= 0)
+
115  if (parent.at(i) >= 0)
116  {
117 
-
118  nodes[parent.at(i)].offspring.push_back(
+
118  nodes[parent.at(i)].offspring.push_back(
119  &key_off.first->second
120  );
121 
122  // Adding the parent to the offspring
-
123  key_off.first->second.parent = &nodes[parent.at(i)];
+
123  key_off.first->second.parent = &nodes[parent.at(i)];
124 
125  }
126 
127  } else { // Case 2b: i does exists (and so does its parent)
128 
129  // We just need to make sure that we update it!
-
130  nodes[geneid.at(i)].duplication = duplication.at(i);
-
131  nodes[geneid.at(i)].annotations = funs;
-
132  nodes[geneid.at(i)].ord = i;
-
133  nodes[geneid.at(i)].id = geneid.at(i);
+
130  nodes[geneid.at(i)].duplication = duplication.at(i);
+
131  nodes[geneid.at(i)].annotations = funs;
+
132  nodes[geneid.at(i)].ord = i;
+
133  nodes[geneid.at(i)].id = geneid.at(i);
134 
-
135  if (parent.at(i) >= 0)
+
135  if (parent.at(i) >= 0)
136  {
137 
-
138  nodes[geneid.at(i)].parent = &nodes[parent.at(i)];
-
139  nodes[parent.at(i)].offspring.push_back(
-
140  &nodes[geneid.at(i)]
+
138  nodes[geneid.at(i)].parent = &nodes[parent.at(i)];
+
139  nodes[parent.at(i)].offspring.push_back(
+
140  &nodes[geneid.at(i)]
141  );
142 
143  }
@@ -281,12 +281,12 @@
183  if (node.is_leaf())
184  {
185 
-
186  for (const auto & a : node.annotations)
+
186  for (const auto & a : node.annotations)
187  {
188 
-
189  if (a == 1u)
+
189  if (a == 1u)
190  this->n_ones++;
-
191  else if (a == 0u)
+
191  else if (a == 0u)
192  this->n_zeros++;
193 
194  }
@@ -380,22 +380,22 @@
282  auto revseq = this->sequence;
283  std::reverse(revseq.begin(), revseq.end());
284 
-
285  for (auto& i : revseq)
+
285  for (auto& i : revseq)
286  {
287 
288  // Leaf do not have offspring
-
289  if (this->nodes[i].is_leaf())
+
289  if (this->nodes[i].is_leaf())
290  continue;
291 
292  // Clearing offspring
-
293  this->nodes[i].offspring.clear();
+
293  this->nodes[i].offspring.clear();
294 
295  // I cannot directly access the node since, if non existent, it will
296  // create an entry with it (alegedly).
-
297  auto n = model_.nodes.find(i);
+
297  auto n = model_.nodes.find(i);
298 
299  for (const auto& off : n->second.offspring)
-
300  this->nodes[i].offspring.push_back(&this->nodes[off->id]);
+
300  this->nodes[i].offspring.push_back(&this->nodes[off->id]);
301 
302  }
303 
@@ -474,18 +474,17 @@
Node::id
size_t id
Id of the node (as specified in the input)
Definition: geese-node-bones.hpp:14
Node::ord
size_t ord
Order in which the node was created.
Definition: geese-node-bones.hpp:15
Node::is_leaf
bool is_leaf() const noexcept
Definition: geese-node-bones.hpp:112
-
i
size_t i
Definition: counters-meat.hpp:83
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
keygen_full
std::vector< double > keygen_full(const PhyloArray &array, const PhyloCounterData *d)
Definition: geese-bones.hpp:36
PhyloModel
barry::Model< PhyloArray, PhyloCounterData, PhyloRuleData, PhyloRuleDynData > PhyloModel
Definition: geese-types.hpp:116
-
a
size_t a
Definition: model-meat.hpp:1287
diff --git a/geese-meat-likelihood_8hpp.html b/geese-meat-likelihood_8hpp.html index 1dc874968..f57124e38 100644 --- a/geese-meat-likelihood_8hpp.html +++ b/geese-meat-likelihood_8hpp.html @@ -123,7 +123,7 @@ diff --git a/geese-meat-likelihood_8hpp_source.html b/geese-meat-likelihood_8hpp_source.html index 7be57abf9..596f966c8 100644 --- a/geese-meat-likelihood_8hpp_source.html +++ b/geese-meat-likelihood_8hpp_source.html @@ -101,219 +101,222 @@
3 
4 #include "geese-bones.hpp"
5 
-
6 inline double Geese::likelihood(
+
6 inline double Geese::likelihood(
7  const std::vector< double > & par,
8  bool as_log,
-
9  bool use_reduced_sequence
-
10 ) {
-
11 
-
12  INITIALIZED()
-
13 
-
14  // Splitting the probabilities
-
15  std::vector< double > par0(par.begin(), par.end() - nfunctions);
-
16  std::vector< double > par_root(par.end() - nfunctions, par.end());
-
17 
-
18  // Scaling root
-
19  for (auto& p : par_root)
-
20  p = std::exp(p)/(std::exp(p) + 1);
-
21 
-
22  double ll = 0.0;
-
23 
-
24  Node * n_off;
-
25 
-
26  // Following the prunning sequence
-
27  std::vector< size_t > * preseq;
-
28 
-
29  if (use_reduced_sequence)
-
30  {
-
31 
-
32  preseq = &this->reduced_sequence;
-
33 
-
34  }
-
35  else
-
36  {
-
37 
-
38  preseq = &this->sequence;
-
39 
-
40  }
-
41 
-
42  // The first time it is called, it need to generate the corresponding
-
43  // hashes of the columns so it is fast to access then (saves time
-
44  // hashing and looking in the map.)
-
45  auto arrays2support = model->get_arrays2support();
-
46 
-
47  for (auto& i : *preseq)
-
48  {
-
49 
-
50  // We cannot compute probability at the leaf, we need to continue
-
51  if (this->nodes[i].is_leaf())
-
52  continue;
-
53 
-
54  // Since we are using this a lot...
-
55  Node & node = nodes[i];
-
56 
-
57  // Iterating through states
-
58  for (size_t s = 0u; s < states.size(); ++s)
-
59  {
-
60 
-
61  // Starting the prob
-
62  double totprob = 0.0;
-
63 
-
64  // Retrieving the sets of arrays
-
65  const std::vector< PhyloArray > * psets =
-
66  model->get_pset(node.narray[s]);
-
67 
-
68  const std::vector<double> * psets_stats =
-
69  model->get_pset_stats(node.narray[s]);
-
70 
-
71  std::vector< std::vector< size_t > > & locations = pset_loc[
-
72  arrays2support->operator[](node.narray[s])
-
73  ];
-
74 
-
75  // Summation over all possible values of X
-
76  size_t nstate = 0u;
-
77  size_t narray = 0u;
-
78  for (auto x = psets->begin(); x != psets->end(); ++x)
-
79  {
-
80 
-
81  if (!x->is_dense())
-
82  throw std::logic_error("This is only supported for dense arrays.");
-
83 
-
84  std::vector< size_t > & location_x = locations[narray++];
-
85 
-
86  // Extracting the possible values of each offspring
-
87  double off_mult = 1.0;
-
88 
-
89  for (auto o = 0u; o < x->ncol(); ++o)
-
90  {
-
91 
-
92  // Setting the node
-
93  n_off = node.offspring[o];
-
94 
-
95  // In the case that the offspring is a leaf, then we need to
-
96  // check whether the state makes sense.
-
97  if (n_off->is_leaf())
-
98  {
-
99  for (auto f = 0u; f < nfunctions; ++f)
-
100  {
-
101  if (n_off->annotations[f] != 9u)
-
102  {
-
103 
-
104  if (x->operator()(f, o) != n_off->annotations[f])
-
105  {
-
106 
-
107  off_mult = -1.0;
-
108  break;
-
109 
-
110  }
-
111 
-
112  }
-
113 
-
114  }
-
115 
-
116  // Going out
-
117  if (off_mult < 0)
-
118  break;
-
119 
-
120  continue;
-
121 
-
122  }
-
123 
-
124  // Retrieving the location to the respective set of probabilities
-
125  off_mult *= node.offspring[o]->subtree_prob[location_x[o]];
-
126 
-
127  }
-
128 
-
129  // Is this state valid?
-
130  if (off_mult < 0.0)
-
131  {
-
132 
-
133  ++nstate;
-
134  continue;
-
135 
-
136  }
-
137 
-
138  // Multiplying by P(x|x_n), the transition probability
-
139  std::vector< double > temp_stats;
-
140  temp_stats.reserve(par0.size());
-
141  for (auto p = 0u; p < par0.size(); ++p)
-
142  temp_stats.push_back(psets_stats->operator[](par0.size() * nstate + p));
-
143 
-
144  nstate++;
-
145 
-
146  // Use try catch in the following line
-
147  try {
-
148  off_mult *= model->likelihood(
-
149  par0,
-
150  temp_stats,
-
151  node.narray[s]
-
152  );
-
153  } catch (std::exception & e) {
-
154 
-
155  auto err = std::string(e.what());
+
9  bool use_reduced_sequence,
+
10  BARRY_NCORES_ARG()
+
11 ) {
+
12 
+
13  INITIALIZED()
+
14 
+
15  // Splitting the probabilities
+
16  std::vector< double > par0(par.begin(), par.end() - nfunctions);
+
17  std::vector< double > par_root(par.end() - nfunctions, par.end());
+
18 
+
19  // Scaling root
+
20  for (auto& p : par_root)
+
21  p = std::exp(p)/(std::exp(p) + 1);
+
22 
+
23  double ll = 0.0;
+
24 
+
25  Node * n_off;
+
26 
+
27  // Following the prunning sequence
+
28  std::vector< size_t > * preseq;
+
29 
+
30  if (use_reduced_sequence)
+
31  {
+
32 
+
33  preseq = &this->reduced_sequence;
+
34 
+
35  }
+
36  else
+
37  {
+
38 
+
39  preseq = &this->sequence;
+
40 
+
41  }
+
42 
+
43  // The first time it is called, it need to generate the corresponding
+
44  // hashes of the columns so it is fast to access then (saves time
+
45  // hashing and looking in the map.)
+
46  auto arrays2support = model->get_arrays2support();
+
47 
+
48  for (auto& i : *preseq)
+
49  {
+
50 
+
51  // We cannot compute probability at the leaf, we need to continue
+
52  if (this->nodes[i].is_leaf())
+
53  continue;
+
54 
+
55  // Since we are using this a lot...
+
56  Node & node = nodes[i];
+
57 
+
58  // Iterating through states
+
59  for (size_t s = 0u; s < states.size(); ++s)
+
60  {
+
61 
+
62  // Starting the prob
+
63  double totprob = 0.0;
+
64 
+
65  // Retrieving the sets of arrays
+
66  const std::vector< PhyloArray > * psets =
+
67  model->get_pset(node.narray[s]);
+
68 
+
69  const std::vector<double> * psets_stats =
+
70  model->get_pset_stats(node.narray[s]);
+
71 
+
72  std::vector< std::vector< size_t > > & locations = pset_loc[
+
73  arrays2support->operator[](node.narray[s])
+
74  ];
+
75 
+
76  // Summation over all possible values of X
+
77  size_t nstate = 0u;
+
78  size_t narray = 0u;
+
79  for (auto x = psets->begin(); x != psets->end(); ++x)
+
80  {
+
81 
+
82  if (!x->is_dense())
+
83  throw std::logic_error("This is only supported for dense arrays.");
+
84 
+
85  std::vector< size_t > & location_x = locations[narray++];
+
86 
+
87  // Extracting the possible values of each offspring
+
88  double off_mult = 1.0;
+
89 
+
90  for (auto o = 0u; o < x->ncol(); ++o)
+
91  {
+
92 
+
93  // Setting the node
+
94  n_off = node.offspring[o];
+
95 
+
96  // In the case that the offspring is a leaf, then we need to
+
97  // check whether the state makes sense.
+
98  if (n_off->is_leaf())
+
99  {
+
100  for (auto f = 0u; f < nfunctions; ++f)
+
101  {
+
102  if (n_off->annotations[f] != 9u)
+
103  {
+
104 
+
105  if (x->operator()(f, o) != n_off->annotations[f])
+
106  {
+
107 
+
108  off_mult = -1.0;
+
109  break;
+
110 
+
111  }
+
112 
+
113  }
+
114 
+
115  }
+
116 
+
117  // Going out
+
118  if (off_mult < 0)
+
119  break;
+
120 
+
121  continue;
+
122 
+
123  }
+
124 
+
125  // Retrieving the location to the respective set of probabilities
+
126  off_mult *= node.offspring[o]->subtree_prob[location_x[o]];
+
127 
+
128  }
+
129 
+
130  // Is this state valid?
+
131  if (off_mult < 0.0)
+
132  {
+
133 
+
134  ++nstate;
+
135  continue;
+
136 
+
137  }
+
138 
+
139  // Multiplying by P(x|x_n), the transition probability
+
140  std::vector< double > temp_stats;
+
141  temp_stats.reserve(par0.size());
+
142  for (auto p = 0u; p < par0.size(); ++p)
+
143  temp_stats.push_back(psets_stats->operator[](par0.size() * nstate + p));
+
144 
+
145  nstate++;
+
146 
+
147  // Use try catch in the following line
+
148  try {
+
149  off_mult *= model->likelihood(
+
150  par0,
+
151  temp_stats,
+
152  node.narray[s],
+
153  ncores
+
154  );
+
155  } catch (std::exception & e) {
156 
-
157  std::string state_str = "";
-
158  for (const auto & ss : states[s])
-
159  state_str += std::to_string(ss) + " ";
-
160 
-
161  err = "Error computing the likelihood at node " +
-
162  std::to_string(node.id) + " with state " + state_str +
-
163  ". Error message:\n" +
-
164  err;
-
165 
-
166  throw std::runtime_error(err);
-
167 
-
168  }
-
169 
-
170  // Adding to the total probabilities
-
171  totprob += off_mult;
-
172 
-
173  }
+
157  auto err = std::string(e.what());
+
158 
+
159  std::string state_str = "";
+
160  for (const auto & ss : states[s])
+
161  state_str += std::to_string(ss) + " ";
+
162 
+
163  err = "Error computing the likelihood at node " +
+
164  std::to_string(node.id) + " with state " + state_str +
+
165  ". Error message:\n" +
+
166  err;
+
167 
+
168  throw std::runtime_error(err);
+
169 
+
170  }
+
171 
+
172  // Adding to the total probabilities
+
173  totprob += off_mult;
174 
-
175  // Setting the probability at the node
-
176  node.subtree_prob[s] = totprob;
-
177 
-
178  }
+
175  }
+
176 
+
177  // Setting the probability at the node
+
178  node.subtree_prob[s] = totprob;
179 
-
180  // All probabilities should be completed at this point
-
181  if (node.parent == nullptr)
-
182  {
-
183 
-
184  for (size_t s = 0u; s < states.size(); ++s)
-
185  {
-
186 
-
187  double tmpll = 1.0;
+
180  }
+
181 
+
182  // All probabilities should be completed at this point
+
183  if (node.parent == nullptr)
+
184  {
+
185 
+
186  for (size_t s = 0u; s < states.size(); ++s)
+
187  {
188 
-
189  for (auto k = 0u; k < nfunctions; ++k)
-
190  {
-
191 
-
192  tmpll *= states[s][k] ? par_root[k] : (1 - par_root[k]);
+
189  double tmpll = 1.0;
+
190 
+
191  for (auto k = 0u; k < nfunctions; ++k)
+
192  {
193 
-
194  }
+
194  tmpll *= states[s][k] ? par_root[k] : (1 - par_root[k]);
195 
-
196  ll += tmpll * node.subtree_prob[s];
+
196  }
197 
-
198  }
-
199  }
-
200 
-
201  }
+
198  ll += tmpll * node.subtree_prob[s];
+
199 
+
200  }
+
201  }
202 
-
203  // In the case that the sequence is empty, then it means
-
204  // that we are looking at a completely unnanotated tree,
-
205  // thus the likelihood should be one
-
206  if (preseq->size() == 0u)
-
207  return as_log ? -std::numeric_limits<double>::infinity() : 1.0;
-
208 
-
209 
-
210  return as_log ? std::log(ll) : ll;
+
203  }
+
204 
+
205  // In the case that the sequence is empty, then it means
+
206  // that we are looking at a completely unnanotated tree,
+
207  // thus the likelihood should be one
+
208  if (preseq->size() == 0u)
+
209  return as_log ? -std::numeric_limits<double>::infinity() : 1.0;
+
210 
211 
-
212 }
-
213 #endif
+
212  return as_log ? std::log(ll) : ll;
+
213 
+
214 }
+
215 #endif
+
BARRY_NCORES_ARG
#define BARRY_NCORES_ARG(default)
Definition: barry-macros.hpp:15
Geese::reduced_sequence
std::vector< size_t > reduced_sequence
Definition: geese-bones.hpp:138
Geese::sequence
std::vector< size_t > sequence
Definition: geese-bones.hpp:137
Geese::pset_loc
std::vector< std::vector< std::vector< size_t > > > pset_loc
Locations of columns.
Definition: geese-bones.hpp:134
Geese::nfunctions
size_t nfunctions
Definition: geese-bones.hpp:130
-
Geese::likelihood
double likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true)
Definition: geese-meat-likelihood.hpp:6
+
Geese::likelihood
double likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true,)
Definition: geese-meat-likelihood.hpp:6
Geese::nodes
std::map< size_t, Node > nodes
Definition: geese-bones.hpp:131
Node
A single node for the model.
Definition: geese-node-bones.hpp:11
Node::annotations
std::vector< size_t > annotations
Observed annotations (only defined for Geese)
Definition: geese-node-bones.hpp:18
@@ -323,18 +326,16 @@
Node::parent
Node * parent
Parent node.
Definition: geese-node-bones.hpp:23
Node::is_leaf
bool is_leaf() const noexcept
Definition: geese-node-bones.hpp:112
Node::subtree_prob
std::vector< double > subtree_prob
Induced subtree probabilities.
Definition: geese-node-bones.hpp:28
-
i
size_t i
Definition: counters-meat.hpp:83
+
i
size_t i
Definition: counters-meat.hpp:83
INITIALIZED
#define INITIALIZED()
Definition: geese-bones.hpp:22
-
k
size_t k
Definition: model-meat.hpp:1294
-
temp_stats
std::vector< double > temp_stats(params.size())
diff --git a/geese-meat-likelihood__exhaust_8hpp.html b/geese-meat-likelihood__exhaust_8hpp.html index 7acabf1c5..ee60ceafd 100644 --- a/geese-meat-likelihood__exhaust_8hpp.html +++ b/geese-meat-likelihood__exhaust_8hpp.html @@ -113,7 +113,7 @@ diff --git a/geese-meat-likelihood__exhaust_8hpp_source.html b/geese-meat-likelihood__exhaust_8hpp_source.html index 695d1bb4a..9dd2cc09b 100644 --- a/geese-meat-likelihood__exhaust_8hpp_source.html +++ b/geese-meat-likelihood__exhaust_8hpp_source.html @@ -129,8 +129,8 @@
31  for (auto& n : nodes)
32  {
33 
-
34  for (size_t i = 0u; i < nfuns(); ++i)
-
35  base(i, n.second.ord) = n.second.annotations[i];
+
34  for (size_t i = 0u; i < nfuns(); ++i)
+
35  base(i, n.second.ord) = n.second.annotations[i];
36 
37  }
38 
@@ -160,10 +160,10 @@
62  std::vector< size_t > tmpstates(this->nfuns());
63 
64  Node * node;
-
65  for (auto& i : preorder)
+
65  for (auto& i : preorder)
66  {
67 
-
68  node = &nodes[i];
+
68  node = &nodes[i];
69  std::fill(tmpstates.begin(), tmpstates.end(), 0u);
70  s->get_col_vec(&tmpstates, node->ord, false);
71 
@@ -172,8 +172,8 @@
74  {
75  // Since it is the root, the first probability is computed using
76  // the root only
-
77  for (auto k = 0u; k < this->nfuns(); ++k)
-
78  prob *= tmpstates[k] == 1u ? par_root[k] : (1.0 - par_root[k]);
+
77  for (auto k = 0u; k < this->nfuns(); ++k)
+
78  prob *= tmpstates[k] == 1u ? par_root[k] : (1.0 - par_root[k]);
79 
80  }
81  else if (node->is_leaf())
@@ -192,14 +192,14 @@
94  );
95 
96  // Filling the array
-
97  for (size_t a = 0u; a < nfuns(); ++a)
+
97  for (size_t a = 0u; a < nfuns(); ++a)
98  {
99 
100  for (size_t o = 0u; o < node->offspring.size(); ++o)
101  {
102 
-
103  if (s->get_cell(a, node->offspring[o]->id) == 1u)
-
104  transition(a, o) = 1u;
+
103  if (s->get_cell(a, node->offspring[o]->id) == 1u)
+
104  transition(a, o) = 1u;
105 
106  }
107 
@@ -236,20 +236,18 @@
Node::parent
Node * parent
Parent node.
Definition: geese-node-bones.hpp:23
Node::ord
size_t ord
Order in which the node was created.
Definition: geese-node-bones.hpp:15
Node::is_leaf
bool is_leaf() const noexcept
Definition: geese-node-bones.hpp:112
-
i
size_t i
Definition: counters-meat.hpp:83
+
i
size_t i
Definition: counters-meat.hpp:83
INITIALIZED
#define INITIALIZED()
Definition: geese-bones.hpp:22
PhyloRuleData
std::vector< std::pair< size_t, size_t > > PhyloRuleData
Definition: geese-types.hpp:101
PhyloArray
barry::BArrayDense< size_t, NodeData > PhyloArray
Definition: geese-types.hpp:104
PhyloPowerSet
barry::PowerSet< PhyloArray, PhyloRuleData > PhyloPowerSet
Definition: geese-types.hpp:117
-
a
size_t a
Definition: model-meat.hpp:1287
-
k
size_t k
Definition: model-meat.hpp:1294
diff --git a/geese-meat-predict_8hpp.html b/geese-meat-predict_8hpp.html index d590e454f..be4f5dbef 100644 --- a/geese-meat-predict_8hpp.html +++ b/geese-meat-predict_8hpp.html @@ -113,7 +113,7 @@ diff --git a/geese-meat-predict_8hpp_source.html b/geese-meat-predict_8hpp_source.html index 655b9d9c6..e4d222367 100644 --- a/geese-meat-predict_8hpp_source.html +++ b/geese-meat-predict_8hpp_source.html @@ -136,7 +136,7 @@
38  size_t root_id = preorder[0u];
39  Node * tmp_node = &nodes[root_id];
40  tmp_node->probability.resize(states.size(), 0.0);
-
41  double tmp_likelihood = likelihood(par, false, use_reduced_sequence);
+
41  double tmp_likelihood = likelihood(par, false, use_reduced_sequence);
42 
43  if (!std::isfinite(tmp_likelihood))
44  {
@@ -179,11 +179,11 @@
81  size_t n_pars = par_terms.size();
82 
83  // This will start from the root node and go down
-
84  for (auto & i : preorder)
+
84  for (auto & i : preorder)
85  {
86 
87  // Leafs have nothing to do here
-
88  Node & parent = nodes[i];
+
88  Node & parent = nodes[i];
89  if (parent.is_leaf())
90  continue;
91 
@@ -215,17 +215,17 @@
117  std::vector< PhyloArray > pset;
118 
119  // Retrieving powerset of stats and arrays
-
120  const auto & pset_arrays = model->get_pset(parent.narray[s]);
+
120  const auto & pset_arrays = model->get_pset(parent.narray[s]);
121  const std::vector<double> * pset_target = model->get_pset_stats(
122  parent.narray[s]
123  );
124 
125  // Going over all possible combinations given parent is state s
-
126  for (size_t p = 0u; p < pset_arrays->size(); ++p)
+
126  for (size_t p = 0u; p < pset_arrays->size(); ++p)
127  {
128 
129  // Corresponding graph and target stats
-
130  const PhyloArray & array_p = pset_arrays->at(p);
+
130  const PhyloArray & array_p = pset_arrays->at(p);
131  std::vector<double> target_p(n_pars, 0.0);
132  for (size_t par_i = 0u; par_i < target_p.size(); ++par_i)
133  target_p[par_i] = pset_target->operator[](p * n_pars + par_i);
@@ -413,8 +413,8 @@
315  {
316 
317  res_prob->resize(nnodes());
-
318  for (auto& i : sequence)
-
319  res_prob->at(nodes[i].ord) = nodes[i].probability;
+
318  for (auto& i : sequence)
+
319  res_prob->at(nodes[i].ord) = nodes[i].probability;
320 
321  }
322 
@@ -480,7 +480,7 @@
Geese::sequence
std::vector< size_t > sequence
Definition: geese-bones.hpp:137
Geese::predict
std::vector< std::vector< double > > predict(const std::vector< double > &par, std::vector< std::vector< double > > *res_prob=nullptr, bool leave_one_out=false, bool only_annotated=false, bool use_reduced_sequence=true)
Definition: geese-meat-predict.hpp:287
Geese::nnodes
size_t nnodes() const noexcept
Number of nodes (interior + leaf)
Definition: geese-meat.hpp:434
-
Geese::likelihood
double likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true)
Definition: geese-meat-likelihood.hpp:6
+
Geese::likelihood
double likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true,)
Definition: geese-meat-likelihood.hpp:6
Geese::update_annotations
void update_annotations(size_t nodeid, std::vector< size_t > newann)
Definition: geese-meat.hpp:285
Geese::nodes
std::map< size_t, Node > nodes
Definition: geese-bones.hpp:131
Geese::predict_backend
std::vector< std::vector< double > > predict_backend(const std::vector< double > &par, bool use_reduced_sequence, const std::vector< size_t > &preorder)
Definition: geese-meat-predict.hpp:6
@@ -496,17 +496,16 @@
Node::is_leaf
bool is_leaf() const noexcept
Definition: geese-node-bones.hpp:112
Node::subtree_prob
std::vector< double > subtree_prob
Induced subtree probabilities.
Definition: geese-node-bones.hpp:28
res
return res
Definition: counters-meat.hpp:265
-
i
size_t i
Definition: counters-meat.hpp:83
+
i
size_t i
Definition: counters-meat.hpp:83
INITIALIZED
#define INITIALIZED()
Definition: geese-bones.hpp:22
PhyloArray
barry::BArrayDense< size_t, NodeData > PhyloArray
Definition: geese-types.hpp:104
-
pset_arrays
return this pset_arrays[a][j]
Definition: model-meat.hpp:1349
diff --git a/geese-meat-predict__exhaust_8hpp.html b/geese-meat-predict__exhaust_8hpp.html index a78022cd5..91ade0a46 100644 --- a/geese-meat-predict__exhaust_8hpp.html +++ b/geese-meat-predict__exhaust_8hpp.html @@ -113,7 +113,7 @@ diff --git a/geese-meat-predict__exhaust_8hpp_source.html b/geese-meat-predict__exhaust_8hpp_source.html index 4a8bd5a3f..5579f98d8 100644 --- a/geese-meat-predict__exhaust_8hpp_source.html +++ b/geese-meat-predict__exhaust_8hpp_source.html @@ -125,16 +125,16 @@
27  // Looping to do LOO
28  std::vector< size_t > annotated_ids = this->get_annotated_nodes();
29  std::vector< size_t > missing_vec(nfuns(), 9u);
-
30  for (auto & i : annotated_ids) {
+
30  for (auto & i : annotated_ids) {
31 
-
32  Node & n = nodes[i];
+
32  Node & n = nodes[i];
33 
34  auto old_ann = n.annotations;
-
35  update_annotations(i, missing_vec);
+
35  update_annotations(i, missing_vec);
36 
37  res[n.ord] = predict_exhaust_backend(par, preorder)[n.ord];
38 
-
39  update_annotations(i, old_ann);
+
39  update_annotations(i, old_ann);
40 
41  }
42 
@@ -156,7 +156,7 @@
58  for (auto& p : par_root)
59  p = std::exp(p)/(std::exp(p) + 1);
60 
-
61  double baseline_likelihood = this->likelihood(par);
+
61  double baseline_likelihood = this->likelihood(par);
62 
63  // Computing all combinations ----------------------------------------------
64  // The base PhyloArray will store the original set of annotations.
@@ -257,8 +257,8 @@
159  for (auto & n: nodes)
160  {
161  res[n.second.ord] = zerovec;
-
162  for (size_t i = 0u; i < nfuns(); ++i)
-
163  res[n.second.ord][i] = expected[n.second.ord + i * nnodes()];
+
162  for (size_t i = 0u; i < nfuns(); ++i)
+
163  res[n.second.ord][i] = expected[n.second.ord + i * nnodes()];
164  }
165 
166  return res;
@@ -267,7 +267,7 @@
169 #endif
Geese::sequence
std::vector< size_t > sequence
Definition: geese-bones.hpp:137
Geese::nnodes
size_t nnodes() const noexcept
Number of nodes (interior + leaf)
Definition: geese-meat.hpp:434
-
Geese::likelihood
double likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true)
Definition: geese-meat-likelihood.hpp:6
+
Geese::likelihood
double likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true,)
Definition: geese-meat-likelihood.hpp:6
Geese::predict_exhaust_backend
std::vector< std::vector< double > > predict_exhaust_backend(const std::vector< double > &par, const std::vector< size_t > &preorder)
Definition: geese-meat-predict_exhaust.hpp:47
Geese::get_annotated_nodes
std::vector< size_t > get_annotated_nodes() const
Returns the ids of the nodes with at least one annotation.
Definition: geese-meat.hpp:769
Geese::update_annotations
void update_annotations(size_t nodeid, std::vector< size_t > newann)
Definition: geese-meat.hpp:285
@@ -282,8 +282,8 @@
Node::ord
size_t ord
Order in which the node was created.
Definition: geese-node-bones.hpp:15
Node::is_leaf
bool is_leaf() const noexcept
Definition: geese-node-bones.hpp:112
res
return res
Definition: counters-meat.hpp:265
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
INITIALIZED
#define INITIALIZED()
Definition: geese-bones.hpp:22
PhyloRuleData
std::vector< std::pair< size_t, size_t > > PhyloRuleData
Definition: geese-types.hpp:101
PhyloArray
barry::BArrayDense< size_t, NodeData > PhyloArray
Definition: geese-types.hpp:104
@@ -294,7 +294,7 @@ diff --git a/geese-meat-predict__sim_8hpp.html b/geese-meat-predict__sim_8hpp.html index 24058e764..eea2f894e 100644 --- a/geese-meat-predict__sim_8hpp.html +++ b/geese-meat-predict__sim_8hpp.html @@ -113,7 +113,7 @@ diff --git a/geese-meat-predict__sim_8hpp_source.html b/geese-meat-predict__sim_8hpp_source.html index 799a45488..372e0118e 100644 --- a/geese-meat-predict__sim_8hpp_source.html +++ b/geese-meat-predict__sim_8hpp_source.html @@ -121,7 +121,7 @@
23  // whether we have all the annotations for the conditional prob.
24  auto annotated = this->get_annotated_nodes();
25 
-
26  for (size_t i = 0u; i < nsims; ++i)
+
26  for (size_t i = 0u; i < nsims; ++i)
27  {
28 
29  // Generating a sample
@@ -179,18 +179,18 @@
81 
82  // Once the simulations have finalized, we can then approximate
83  // probabilities
-
84  for (size_t i = 0u; i < nnodes(); ++i)
+
84  for (size_t i = 0u; i < nnodes(); ++i)
85  {
86 
87  // if no counts, then continue
-
88  if (counts[i] == 0u)
+
88  if (counts[i] == 0u)
89  continue;
90 
91  #ifdef BARRY_DEBUG
-
92  printf_barry("We used %i counts for node %i.\n", counts[i], i);
+
92  printf_barry("We used %i counts for node %i.\n", counts[i], i);
93  #endif
94  for (size_t f = 0u; f < nfuns(); ++f)
-
95  res_vec[i][f] /= (static_cast< double >(counts[i]) + 1e-10);
+
95  res_vec[i][f] /= (static_cast< double >(counts[i]) + 1e-10);
96  }
97 
98  return res_vec;
@@ -209,8 +209,8 @@
Node
A single node for the model.
Definition: geese-node-bones.hpp:11
Node::id
size_t id
Id of the node (as specified in the input)
Definition: geese-node-bones.hpp:14
Node::ord
size_t ord
Order in which the node was created.
Definition: geese-node-bones.hpp:15
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
INITIALIZED
#define INITIALIZED()
Definition: geese-bones.hpp:22
@@ -218,7 +218,7 @@ diff --git a/geese-meat-simulate_8hpp.html b/geese-meat-simulate_8hpp.html index 99fbb4c53..4ccc78ab9 100644 --- a/geese-meat-simulate_8hpp.html +++ b/geese-meat-simulate_8hpp.html @@ -113,7 +113,7 @@ diff --git a/geese-meat-simulate_8hpp_source.html b/geese-meat-simulate_8hpp_source.html index 00edc6d4d..523f758db 100644 --- a/geese-meat-simulate_8hpp_source.html +++ b/geese-meat-simulate_8hpp_source.html @@ -127,22 +127,22 @@
29 
30  // Generating probabilities at the root-level (root state)
31  std::vector< double > rootp(states.size(), 1.0);
-
32  for (size_t i = 0u; i < rootp.size(); ++i)
+
32  for (size_t i = 0u; i < rootp.size(); ++i)
33  {
34 
35  for (size_t j = 0u; j < nfuns(); ++j)
-
36  rootp[i] *= states[i][j] ? par_root[j] : (1.0 - par_root[j]);
+
36  rootp[i] *= states[i][j] ? par_root[j] : (1.0 - par_root[j]);
37 
38  }
39 
40  // Preparing the random number generator
-
41  std::uniform_real_distribution<> urand(0, 1);
-
42  double r = urand(*rengine);
+
41  std::uniform_real_distribution<> urand(0, 1);
+
42  double r = urand(*rengine);
43  size_t idx = 0u;
-
44  double cumprob = rootp[idx];
-
45  while ((idx < rootp.size()) && (cumprob < r))
+
44  double cumprob = rootp[idx];
+
45  while ((idx < rootp.size()) && (cumprob < r))
46  {
-
47  cumprob += rootp[++idx];
+
47  cumprob += rootp[++idx];
48  }
49 
50  #ifdef BARRY_DEBUG
@@ -159,13 +159,13 @@
61  vector_caster< size_t, bool>(states[idx]);
62 
63  // Going in the opposite direction
-
64  for (auto& i : preorder)
+
64  for (auto& i : preorder)
65  {
66 
-
67  if (nodes[i].is_leaf())
+
67  if (nodes[i].is_leaf())
68  continue;
69 
-
70  const Node & n = nodes[i];
+
70  const Node & n = nodes[i];
71 
72  // Getting the id of the state
73  size_t lth_state = map_to_state_id[res[n.ord]];
@@ -198,19 +198,16 @@
Node::narray
std::vector< size_t > narray
ID of the array in the model.
Definition: geese-node-bones.hpp:25
Node::ord
size_t ord
Order in which the node was created.
Definition: geese-node-bones.hpp:15
res
return res
Definition: counters-meat.hpp:265
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
INITIALIZED
#define INITIALIZED()
Definition: geese-bones.hpp:22
-
r
double r
Definition: model-meat.hpp:1291
-
urand
std::uniform_real_distribution urand(0, 1)
-
cumprob
double cumprob
Definition: model-meat.hpp:1292
diff --git a/geese-meat_8hpp.html b/geese-meat_8hpp.html index 0c9cb0f6b..c29785ae1 100644 --- a/geese-meat_8hpp.html +++ b/geese-meat_8hpp.html @@ -113,7 +113,7 @@ diff --git a/geese-meat_8hpp_source.html b/geese-meat_8hpp_source.html index d5638eac6..11de2b8a3 100644 --- a/geese-meat_8hpp_source.html +++ b/geese-meat_8hpp_source.html @@ -121,7 +121,7 @@
23  n.subtree_prob.resize(states.size(), 1.0);
24 
25  // Adding the data, first through functions
-
26  for (size_t k = 0u; k < nfunctions; ++k)
+
26  for (size_t k = 0u; k < nfunctions; ++k)
27  {
28 
29  // Then through the offspring
@@ -133,8 +133,8 @@
35  if (o->is_leaf())
36  {
37 
-
38  if (o->annotations[k] != 0)
-
39  n.array.insert_cell(k, j, o->annotations[k], false, false);
+
38  if (o->annotations[k] != 0)
+
39  n.array.insert_cell(k, j, o->annotations[k], false, false);
40 
41  }
42  else
@@ -145,7 +145,7 @@
47  // with the actual value as it is the powerset that matters. Using
48  // nine instead will block the cell and stop the routine for computing
49  // the values correctly
-
50  n.array.insert_cell(k, j, 9u, false, false);
+
50  n.array.insert_cell(k, j, 9u, false, false);
51 
52  }
53 
@@ -253,7 +253,7 @@
155 
156  states.reserve(pset.data.size());
157 
-
158  size_t i = 0u;
+
158  size_t i = 0u;
159 
160  for (auto& iter : pset.data)
161  {
@@ -264,14 +264,14 @@
166  {
167 
168  if (!iter.is_empty(j, 0u, false))
-
169  states[i][j] = true;
+
169  states[i][j] = true;
170 
171  }
172 
173  // Adding to map so we can look at it later on
-
174  map_to_state_id.insert({iter.get_col_vec(0u, false), i});
+
174  map_to_state_id.insert({iter.get_col_vec(0u, false), i});
175 
-
176  i++;
+
176  i++;
177 
178  }
179 
@@ -330,14 +330,14 @@
232  auto sup_array = sup_arrays->operator[](s);
233  pset_loc[s].resize(sup_array.size());
234 
-
235  for (auto a = 0u; a < sup_array.size(); ++a)
+
235  for (auto a = 0u; a < sup_array.size(); ++a)
236  {
237 
-
238  for (auto o = 0u; o < sup_array[a].ncol(); ++o)
+
238  for (auto o = 0u; o < sup_array[a].ncol(); ++o)
239  {
240 
-
241  sup_array[a].get_col_vec(&tmpstate, o, false);
-
242  pset_loc[s][a].push_back(map_to_state_id[tmpstate]);
+
241  sup_array[a].get_col_vec(&tmpstate, o, false);
+
242  pset_loc[s][a].push_back(map_to_state_id[tmpstate]);
243 
244  }
245 
@@ -460,21 +460,21 @@
362  // the node from the model
363  std::vector< bool > includeit(nodes.size(), false);
364 
-
365  for (auto& i : sequence)
+
365  for (auto& i : sequence)
366  {
367 
-
368  Node & n = nodes[i];
+
368  Node & n = nodes[i];
369 
370  // We will count this at the end
371  if (n.is_leaf())
372  {
373 
-
374  for (size_t k = 0u; k < nfuns(); ++k)
-
375  if (n.annotations[k] != 9u)
+
374  for (size_t k = 0u; k < nfuns(); ++k)
+
375  if (n.annotations[k] != 9u)
376  {
377 
378  includeit[n.ord] = true;
-
379  reduced_sequence.push_back(i);
+
379  reduced_sequence.push_back(i);
380  break;
381 
382  }
@@ -490,7 +490,7 @@
392  {
393 
394  includeit[n.ord] = true;
-
395  reduced_sequence.push_back(i);
+
395  reduced_sequence.push_back(i);
396  break;
397 
398  }
@@ -510,10 +510,10 @@
412  this->states.size() * nodes.size()
413  );
414 
-
415  for (auto& i : sequence)
+
415  for (auto& i : sequence)
416  {
417 
-
418  for (auto& p : this->nodes.at(i).subtree_prob)
+
418  for (auto& p : this->nodes.at(i).subtree_prob)
419  res.push_back(p);
420 
421  }
@@ -649,14 +649,14 @@
551  for (auto& o : n.second.offspring)
552  {
553 
-
554  for (size_t k = 0u; k < nfuns(); ++k)
+
554  for (size_t k = 0u; k < nfuns(); ++k)
555  {
556 
-
557  if (o->annotations.at(k) != 0)
+
557  if (o->annotations.at(k) != 0)
558  {
559 
560  tmparray.insert_cell(
-
561  k, j, o->annotations.at(k), false, false
+
561  k, j, o->annotations.at(k), false, false
562  );
563 
564  }
@@ -711,10 +711,10 @@
613 
614  size_t j = 0u;
615  for (auto& o : n.second.offspring) {
-
616  for (size_t k = 0u; k < nfuns(); ++k) {
-
617  if (o->annotations.at(k) != 0) {
+
616  for (size_t k = 0u; k < nfuns(); ++k) {
+
617  if (o->annotations.at(k) != 0) {
618  tmparray.insert_cell(
-
619  k, j, o->annotations.at(k), false, false
+
619  k, j, o->annotations.at(k), false, false
620  );
621  }
622  }
@@ -796,16 +796,16 @@
698 
699  // Annotations
700  printf_barry("ann: [");
-
701  for (const auto & a: n.second.annotations)
+
701  for (const auto & a: n.second.annotations)
702  {
703  // Print with ']' if last element
-
704  if (&a == &n.second.annotations.back())
+
704  if (&a == &n.second.annotations.back())
705  {
-
706  printf_barry("%li] -- ", a);
+
706  printf_barry("%li] -- ", a);
707  }
708  else
709  {
-
710  printf_barry("%li, ", a);
+
710  printf_barry("%li, ", a);
711  }
712  }
713 
@@ -970,8 +970,8 @@
Node::is_leaf
bool is_leaf() const noexcept
Definition: geese-node-bones.hpp:112
Node::subtree_prob
std::vector< double > subtree_prob
Induced subtree probabilities.
Definition: geese-node-bones.hpp:28
res
return res
Definition: counters-meat.hpp:265
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
noexcept
Data_Type &&counter_ noexcept
Definition: counters-meat.hpp:27
INITIALIZED
#define INITIALIZED()
Definition: geese-bones.hpp:22
keygen_full
std::vector< double > keygen_full(const PhyloArray &array, const PhyloCounterData *d)
Definition: geese-bones.hpp:36
@@ -981,15 +981,13 @@
PhyloStatsCounter
barry::StatsCounter< PhyloArray, PhyloCounterData > PhyloStatsCounter
Definition: geese-types.hpp:115
PhyloPowerSet
barry::PowerSet< PhyloArray, PhyloRuleData > PhyloPowerSet
Definition: geese-types.hpp:117
PhyloSupport
barry::Support< PhyloArray, PhyloCounterData, PhyloRuleData, PhyloRuleDynData > PhyloSupport
Definition: geese-types.hpp:114
-
a
size_t a
Definition: model-meat.hpp:1287
-
k
size_t k
Definition: model-meat.hpp:1294
diff --git a/geese-node-bones_8hpp.html b/geese-node-bones_8hpp.html index 0cca54625..7cacfdb83 100644 --- a/geese-node-bones_8hpp.html +++ b/geese-node-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/geese-node-bones_8hpp_source.html b/geese-node-bones_8hpp_source.html index 2d10667cb..087b08a8a 100644 --- a/geese-node-bones_8hpp_source.html +++ b/geese-node-bones_8hpp_source.html @@ -225,7 +225,7 @@ diff --git a/geese-types_8hpp.html b/geese-types_8hpp.html index 4ca9704a1..4c6294b63 100644 --- a/geese-types_8hpp.html +++ b/geese-types_8hpp.html @@ -123,7 +123,7 @@

- +

Macros

#define POS(a, b)   (b)*N + (a)
#define POS(a, b)   (b)*N + (a)
 
- + @@ -176,7 +176,7 @@

a) +

@@ -165,7 +165,7 @@

#define POS

 (  a, a,
   (b)*N + (a)
@@ -384,7 +384,7 @@

  • include
  • barry
  • models
  • geese
  • geese-types.hpp
    • -
  • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
    • +
  • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

diff --git a/geese-types_8hpp_source.html b/geese-types_8hpp_source.html index f28b47001..6b663d577 100644 --- a/geese-types_8hpp_source.html +++ b/geese-types_8hpp_source.html @@ -129,9 +129,9 @@
49 
50 public:
51  PhyloCounterData(
-
52  std::vector< size_t > data_,
-
53  std::vector< double > * counters_ = nullptr
-
54  ) : data(data_), counters(counters_) {};
+
52  std::vector< size_t > data_,
+
53  std::vector< double > * counters_ = nullptr
+
54  ) : data(data_), counters(counters_) {};
55 
56  PhyloCounterData() : data(0u) {};
57 
@@ -262,7 +262,7 @@
PhyloRuleDynData::counts
const std::vector< double > * counts
Definition: geese-types.hpp:76
data
Data_Type &&counter_ data(std::move(counter_.data))
-
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
+
data_
Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
Definition: counters-meat.hpp:182
PhyloCounters
barry::Counters< PhyloArray, PhyloCounterData > PhyloCounters
Definition: geese-types.hpp:106
PhyloModel
barry::Model< PhyloArray, PhyloCounterData, PhyloRuleData, PhyloRuleDynData > PhyloModel
Definition: geese-types.hpp:116
PhyloRuleData
std::vector< std::pair< size_t, size_t > > PhyloRuleData
Definition: geese-types.hpp:101
@@ -275,7 +275,7 @@
PhyloPowerSet
barry::PowerSet< PhyloArray, PhyloRuleData > PhyloPowerSet
Definition: geese-types.hpp:117
PhyloSupport
barry::Support< PhyloArray, PhyloCounterData, PhyloRuleData, PhyloRuleDynData > PhyloSupport
Definition: geese-types.hpp:114
PhyloRules
barry::Rules< PhyloArray, PhyloRuleData > PhyloRules
Definition: geese-types.hpp:109
-
counters_
Data_Counter_Type * counters_
Definition: model-meat.hpp:344
+
counters_
Data_Type * counters_
Definition: statscounter-meat.hpp:54
@@ -283,7 +283,7 @@ diff --git a/geese_2counters_8hpp.html b/geese_2counters_8hpp.html index 604177687..39ec5d445 100644 --- a/geese_2counters_8hpp.html +++ b/geese_2counters_8hpp.html @@ -127,10 +127,10 @@   #define IF_NOTMATCHES()   -#define PHYLO_COUNTER_LAMBDA(a) +#define PHYLO_COUNTER_LAMBDA(a)  Extension of a simple counter. More...
  -#define PHYLO_RULE_DYN_LAMBDA(a) +#define PHYLO_RULE_DYN_LAMBDA(a)   #define PHYLO_CHECK_MISSING()   @@ -142,7 +142,7 @@ void counter_gains (PhyloCounters *counters, std::vector< size_t > nfun, size_t duplication=Geese::etype_default)  Functional gains for a specific function (nfun). More...
  -void counter_gains_k_offspring (PhyloCounters *counters, std::vector< size_t > nfun, size_t k=1u, size_t duplication=Geese::etype_default) +void counter_gains_k_offspring (PhyloCounters *counters, std::vector< size_t > nfun, size_t k=1u, size_t duplication=Geese::etype_default)  k genes gain function nfun More...
  void counter_genes_changing (PhyloCounters *counters, size_t duplication=Geese::etype_default) @@ -187,7 +187,7 @@ void counter_co_opt (PhyloCounters *counters, size_t nfunA, size_t nfunB, size_t duplication=Geese::etype_default)  Function co-opting. More...
  -void counter_k_genes_changing (PhyloCounters *counters, size_t k, size_t duplication=Geese::etype_default) +void counter_k_genes_changing (PhyloCounters *counters, size_t k, size_t duplication=Geese::etype_default)  Indicator function. Equals to one if \(k\) genes changed and zero otherwise. More...
  void counter_less_than_p_prop_genes_changing (PhyloCounters *counters, double p, size_t duplication=Geese::etype_default) @@ -215,7 +215,7 @@ diff --git a/geese_2counters_8hpp_source.html b/geese_2counters_8hpp_source.html index 9da42a47e..8ff48d5f2 100644 --- a/geese_2counters_8hpp_source.html +++ b/geese_2counters_8hpp_source.html @@ -147,7 +147,7 @@
75  IF_NOTMATCHES()
76  return 0.0;
77 
-
78  return Array.D_ptr()->states[i] ? 0.0 : 1.0;
+
78  return Array.D_ptr()->states[i] ? 0.0 : 1.0;
79 
80  };
81 
@@ -176,15 +176,15 @@
107  return 0.0;
108 
109  double ngains = 0.0;
-
110  auto k = data[1u];
-
111  auto s = Array.D_ptr()->states[k];
+
110  auto k = data[1u];
+
111  auto s = Array.D_ptr()->states[k];
112 
113  if (s)
114  return 0.0;
115 
116  for (auto o = 0u; o < Array.ncol(); ++o)
117  {
-
118  if (Array(k, o) == 1u)
+
118  if (Array(k, o) == 1u)
119  ngains += 1.0;
120  }
121 
@@ -196,21 +196,21 @@
127  {
128 
129  // Is there any gain?
-
130  if (Array.D_ptr()->states[i])
+
130  if (Array.D_ptr()->states[i])
131  return 0.0;
132 
133  IF_MATCHES()
-
134  return (i == data[1u]) ? 1.0 : 0.0;
+
134  return (i == data[1u]) ? 1.0 : 0.0;
135 
136  return 0.0;
137 
138  };
139 
-
140  for (auto& i : nfun)
+
140  for (auto& i : nfun)
141  counters->add_counter(
142  tmp_count, tmp_init, nullptr,
-
143  PhyloCounterData({duplication, i}),
-
144  "Gains " + std::to_string(i) + get_last_name(duplication)
+
143  PhyloCounterData({duplication, i}),
+
144  "Gains " + std::to_string(i) + get_last_name(duplication)
145  );
146 
147  return;
@@ -222,7 +222,7 @@
156 inline void counter_gains_k_offspring(
157  PhyloCounters * counters,
158  std::vector<size_t> nfun,
-
159  size_t k = 1u,
+
159  size_t k = 1u,
160  size_t duplication = Geese::etype_default
161 )
162 {
@@ -239,22 +239,22 @@
173  {
174 
175  // Is this relevant?
-
176  if (i != data[1u])
+
176  if (i != data[1u])
177  return 0.0;
178 
179  IF_NOTMATCHES()
180  return 0.0;
181 
182  // Is there any gain?
-
183  if (Array.D_ptr()->states[i])
+
183  if (Array.D_ptr()->states[i])
184  return 0.0;
185 
186  // Making the counts
187  int counts = 0;
-
188  for (size_t k = 0u; k < Array.ncol(); ++k)
-
189  if (k != j)
+
188  for (size_t k = 0u; k < Array.ncol(); ++k)
+
189  if (k != j)
190  {
-
191  if (Array(i, k, false) == 1u)
+
191  if (Array(i, k, false) == 1u)
192  ++counts;
193  }
194 
@@ -274,11 +274,11 @@
208 
209  };
210 
-
211  for (auto& i : nfun)
+
211  for (auto& i : nfun)
212  counters->add_counter(
213  tmp_count, tmp_init, nullptr,
-
214  PhyloCounterData({duplication, i, k}),
-
215  std::to_string(k) + " genes gain " + std::to_string(i) +
+
214  PhyloCounterData({duplication, i, k}),
+
215  std::to_string(k) + " genes gain " + std::to_string(i) +
216  get_last_name(duplication)
217  );
218 
@@ -325,11 +325,11 @@
263  return 0.0;
264 
265  // Need to check the other functions
-
266  for (size_t k = 0u; k < Array.nrow(); ++k)
+
266  for (size_t k = 0u; k < Array.nrow(); ++k)
267  {
268 
269  // Nah, this gene was already different.
-
270  if ((k != i) && (Array.D_ptr()->states[k] != (Array(k, j, false) == 1u)))
+
270  if ((k != i) && (Array.D_ptr()->states[k] != (Array(k, j, false) == 1u)))
271  return 0.0;
272 
273 
@@ -337,7 +337,7 @@
275 
276  // Nope, this gene is now matching its parent, so we need to
277  // take it out from the count of genes that have changed.
-
278  return Array.D_ptr()->states[i] ? -1.0 : 1.0;
+
278  return Array.D_ptr()->states[i] ? -1.0 : 1.0;
279 
280  };
281 
@@ -390,15 +390,15 @@
331  auto nfunA = data[1u];
332  auto nfunB = data[2u];
333 
-
334  if ((i != nfunA) & (i != nfunB))
+
334  if ((i != nfunA) & (i != nfunB))
335  return 0.0;
336 
337  if (Array.D_ptr()->states[data[1u]] || Array.D_ptr()->states[data[2u]])
338  return 0.0;
339 
-
340  size_t k = (i == nfunA) ? nfunB : nfunA;
+
340  size_t k = (i == nfunA) ? nfunB : nfunA;
341 
-
342  if (Array(k, j) == 1u)
+
342  if (Array(k, j) == 1u)
343  return 0.0;
344 
345  double res = 0.0;
@@ -407,7 +407,7 @@
348  if (off == j)
349  continue;
350 
-
351  if ((Array(i, off) == 0u) && (Array(k, off) == 0u))
+
351  if ((Array(i, off) == 0u) && (Array(k, off) == 0u))
352  res -= 1.0;
353 
354  }
@@ -485,7 +485,7 @@
430  for (size_t f = 0u; f < Array.nrow(); ++f)
431  {
432 
-
433  if (f == i)
+
433  if (f == i)
434  {
435  if (par_state[f])
436  {
@@ -539,7 +539,7 @@
487  PHYLO_COUNTER_LAMBDA(tmp_count)
488  {
489 
-
490  if (!Array.D_ptr()->states[i])
+
490  if (!Array.D_ptr()->states[i])
491  return 0.0;
492 
493  IF_MATCHES()
@@ -647,10 +647,10 @@
601  IF_NOTMATCHES()
602  return 0.0;
603 
-
604  if (!Array.D_ptr()->states[i])
+
604  if (!Array.D_ptr()->states[i])
605  return 0.0;
606 
-
607  return (i == data[1u]) ? -1.0 : 0.0;
+
607  return (i == data[1u]) ? -1.0 : 0.0;
608 
609  };
610 
@@ -671,11 +671,11 @@
625 
626  };
627 
-
628  for (auto& i : nfun)
+
628  for (auto& i : nfun)
629  counters->add_counter(
630  tmp_count, tmp_init, nullptr,
-
631  PhyloCounterData({duplication, i}),
-
632  "Loss " + std::to_string(i) + get_last_name(duplication)
+
631  PhyloCounterData({duplication, i}),
+
632  "Loss " + std::to_string(i) + get_last_name(duplication)
633  );
634 
635  return;
@@ -695,7 +695,7 @@
652  IF_NOTMATCHES()
653  return 0.0;
654 
-
655  if (Array.D_ptr()->states[i])
+
655  if (Array.D_ptr()->states[i])
656  return -1.0;
657  else
658  return 1.0;
@@ -715,8 +715,8 @@
672  // As many chances to change as offspring
673  double noff = static_cast<double> (Array.ncol());
674  double counts = 0.0;
-
675  for (size_t k = 0u; k < Array.nrow(); ++k)
-
676  if (Array.D_ptr()->states[k])
+
675  for (size_t k = 0u; k < Array.nrow(); ++k)
+
676  if (Array.D_ptr()->states[k])
677  counts += noff;
678 
679  return counts;
@@ -757,7 +757,7 @@
718  auto funB = data[2u];
719 
720  // Are we looking at either of the relevant functions?
-
721  if ((funA != i) && (funB != i))
+
721  if ((funA != i) && (funB != i))
722  return 0.0;
723 
724  // Are A and B existant? if not, no change
@@ -765,7 +765,7 @@
726  return 0.0;
727 
728  // Figuring out which is the first (reference) function
-
729  size_t other = (i == funA)? funB : funA;
+
729  size_t other = (i == funA)? funB : funA;
730  double res = 0.0;
731  // There are 4 cases: (first x second) x (had the second function)
732  if (Array(other, j, false) == 1u)
@@ -778,7 +778,7 @@
739  if (off == j)
740  continue;
741 
-
742  if ((Array(i, off, false) == 1u) && (Array(other, off, false) == 0u))
+
742  if ((Array(i, off, false) == 1u) && (Array(other, off, false) == 0u))
743  res -= 1.0;
744 
745  }
@@ -792,7 +792,7 @@
753  if (off == j)
754  continue;
755 
-
756  if ((Array(i, off, false) == 0u) && (Array(other, off, false) == 1u))
+
756  if ((Array(i, off, false) == 0u) && (Array(other, off, false) == 1u))
757  res += 1.0;
758 
759  }
@@ -841,14 +841,14 @@
806  auto d2 = data[2u];
807 
808  // Is the function in scope relevant?
-
809  if ((i != d1) && (i != d2))
+
809  if ((i != d1) && (i != d2))
810  return 0.0;
811 
812  // None should have it
813  if (!Array.D_ptr()->states[d1] && !Array.D_ptr()->states[d2])
814  {
815 
-
816  size_t other = (i == d1)? d2 : d1;
+
816  size_t other = (i == d1)? d2 : d1;
817 
818  if (Array(other, j, false) == 1u)
819  return 1.0;
@@ -942,7 +942,7 @@
908  {
909  // Checking the previous function... was it
910  // different before?
-
911  if ((f == i) && states[i])
+
911  if ((f == i) && states[i])
912  {
913  j_mutates_prev = true;
914  break;
@@ -1064,12 +1064,12 @@
1034  auto funB = data[2u];
1035 
1036  // Is the function in scope relevant?
-
1037  if ((i != funA) && (i != funB))
+
1037  if ((i != funA) && (i != funB))
1038  return 0.0;
1039 
1040  // Checking if the parent has both functions
-
1041  size_t other = (i == funA)? funB : funA;
-
1042  bool parent_i = Array.D_ptr()->states[i];
+
1041  size_t other = (i == funA)? funB : funA;
+
1042  bool parent_i = Array.D_ptr()->states[i];
1043  bool parent_other = Array.D_ptr()->states[other];
1044 
1045  if (!parent_i & !parent_other)
@@ -1085,7 +1085,7 @@
1055 
1056 
1057  for (auto off = 0u; off < Array.ncol(); ++off)
-
1058  if ((Array(i,off) == 0) && (Array(other,off) == 1))
+
1058  if ((Array(i,off) == 0) && (Array(other,off) == 1))
1059  res += 1.0;
1060 
1061  }
@@ -1093,7 +1093,7 @@
1063  {
1064 
1065  for (auto off = 0u; off < Array.ncol(); ++off)
-
1066  if ((Array(i,off) == 1) && (Array(other,off) == 0))
+
1066  if ((Array(i,off) == 1) && (Array(other,off) == 0))
1067  res -= 1.0;
1068 
1069  }
@@ -1136,11 +1136,11 @@
1111  return 0.0;
1112 
1113  // Is the function in scope relevant?
-
1114  if (i != data[1u])
+
1114  if (i != data[1u])
1115  return 0.0;
1116 
1117  // Checking if the parent has the function
-
1118  if (Array.D_ptr()->states[i])
+
1118  if (Array.D_ptr()->states[i])
1119  return 0.0;
1120 
1121  // Figuring out which is the first (reference) function
@@ -1151,7 +1151,7 @@
1126  if (off == j)
1127  continue;
1128 
-
1129  if ((Array(i, off) == 0))
+
1129  if ((Array(i, off) == 0))
1130  res += 1.0;
1131  else
1132  res -= 1.0;
@@ -1200,7 +1200,7 @@
1179  const size_t & funB = data[2u];
1180 
1181  // Checking scope
-
1182  if ((i != funA) && (i != funB))
+
1182  if ((i != funA) && (i != funB))
1183  return 0.0;
1184 
1185  // Checking the parent doesn't have funA or has funB
@@ -1209,7 +1209,7 @@
1188 
1189  double res = 0.0;
1190 
-
1191  if (i == funA)
+
1191  if (i == funA)
1192  {
1193 
1194  if (Array(funB, j) == 0u)
@@ -1322,7 +1322,7 @@
1311  const size_t funB = data[2u];
1312 
1313  // If the change is out of scope, then nothing to do
-
1314  if ((i != funA) & (i != funB))
+
1314  if ((i != funA) & (i != funB))
1315  return 0.0;
1316 
1317  // If the parent does not have the initial state, then it makes no sense
@@ -1330,7 +1330,7 @@
1319  return 0.0;
1320 
1321  // Checking whether function A or function B changed
-
1322  if (i == funA) {
+
1322  if (i == funA) {
1323 
1324  // What was the state of the other function? If B is present, then
1325  // nothing changes.
@@ -1400,7 +1400,7 @@
1389 // -----------------------------------------------------------------------------
1394 inline void counter_k_genes_changing(
1395  PhyloCounters * counters,
-
1396  size_t k,
+
1396  size_t k,
1397  size_t duplication = Geese::etype_default
1398 )
1399 {
@@ -1435,7 +1435,7 @@
1428  bool j_diverges = false;
1429  const auto & par_state = Array.D_ptr()->states;
1430 
-
1431  int k = static_cast<int>(data[1u]);
+
1431  int k = static_cast<int>(data[1u]);
1432 
1433  for (auto o = 0u; o < Array.ncol(); ++o)
1434  {
@@ -1461,7 +1461,7 @@
1454 
1455  // Counts will only be relevant if (count - k) > 1. Otherwise,
1456  // having the j gene changed is not relevant
-
1457  if (std::abs(count - k) > 1)
+
1457  if (std::abs(count - k) > 1)
1458  return 0.0;
1459 
1460  // Did it used to diverge?
@@ -1469,7 +1469,7 @@
1462  for (auto f = 0u; f < Array.nrow(); ++f)
1463  {
1464 
-
1465  if (f == i)
+
1465  if (f == i)
1466  {
1467  if (par_state[f]) // Since it is now true, it used to diverge
1468  {
@@ -1501,14 +1501,14 @@
1494  else
1495  count_prev++;
1496 
-
1497  return (count == k ? 1.0 : 0.0) - (count_prev == k ? 1.0 : 0.0);
+
1497  return (count == k ? 1.0 : 0.0) - (count_prev == k ? 1.0 : 0.0);
1498 
1499  };
1500 
1501  counters->add_counter(
1502  tmp_count, tmp_init, nullptr,
-
1503  PhyloCounterData({duplication, k}),
-
1504  std::to_string(k) + " genes changing" + get_last_name(duplication)
+
1503  PhyloCounterData({duplication, k}),
+
1504  std::to_string(k) + " genes changing" + get_last_name(duplication)
1505  );
1506 
1507 }
@@ -1578,7 +1578,7 @@
1575  for (size_t f = 0u; f < Array.nrow(); ++f)
1576  {
1577 
-
1578  if (f == i)
+
1578  if (f == i)
1579  {
1580  if (par_state[f])
1581  {
@@ -1649,7 +1649,7 @@
1650  }
1651 
1652  // Is this the function?
-
1653  if (i != data[1u])
+
1653  if (i != data[1u])
1654  return 0.0;
1655 
1656  // Now computing the change stats
@@ -1659,7 +1659,7 @@
1660  if (off == j)
1661  continue;
1662 
-
1663  if (Array(i, off) == 1u)
+
1663  if (Array(i, off) == 1u)
1664  res -= 2.0;
1665  }
1666 
@@ -1675,11 +1675,11 @@
1676 
1677  };
1678 
-
1679  for (auto& i : nfun)
+
1679  for (auto& i : nfun)
1680  counters->add_counter(
1681  tmp_count, tmp_init, nullptr,
-
1682  PhyloCounterData({duplication, i}),
-
1683  "First gain " + std::to_string(i) +
+
1682  PhyloCounterData({duplication, i}),
+
1683  "First gain " + std::to_string(i) +
1684  get_last_name(duplication)
1685  );
1686 
@@ -1744,7 +1744,7 @@
1753  IF_NOTMATCHES()
1754  return 0.0;
1755 
-
1756  size_t funpar = Array.D_ptr()->states[i] == 1u;
+
1756  size_t funpar = Array.D_ptr()->states[i] == 1u;
1757 
1758  // All must be false
1759  double res = 0.0;
@@ -1753,9 +1753,9 @@
1762  if (off == j)
1763  continue;
1764 
-
1765  if (funpar > Array(i, off))
+
1765  if (funpar > Array(i, off))
1766  res -= 1.0;
-
1767  else if (funpar < Array(i, off))
+
1767  else if (funpar < Array(i, off))
1768  res += 1.0;
1769  }
1770 
@@ -1809,13 +1809,13 @@
1823  // Not in the scope
1824  auto funA = data[1u];
1825  auto funB = data[2u];
-
1826  if ((funA != i) && (funB != i))
+
1826  if ((funA != i) && (funB != i))
1827  return 0.0;
1828 
-
1829  size_t k = (funA == i) ? funB : funA;
+
1829  size_t k = (funA == i) ? funB : funA;
1830 
-
1831  bool parent_i = Array.D_ptr()->states[i];
-
1832  bool parent_k = Array.D_ptr()->states[k];
+
1831  bool parent_i = Array.D_ptr()->states[i];
+
1832  bool parent_k = Array.D_ptr()->states[k];
1833 
1834  // if (!parent_i & !parent_k)
1835  // return 0.0;
@@ -1825,7 +1825,7 @@
1839  if (!parent_i & !parent_k)
1840  {
1841 
-
1842  if (Array(k, j) == 1u)
+
1842  if (Array(k, j) == 1u)
1843  return 0.0;
1844 
1845  for (auto off = 0u; off < Array.ncol(); ++off)
@@ -1834,7 +1834,7 @@
1848  if (off == j)
1849  continue;
1850 
-
1851  if ((Array(i, off) == 0u) && (Array(k, off) == 0u))
+
1851  if ((Array(i, off) == 0u) && (Array(k, off) == 0u))
1852  res -= 1.0;
1853 
1854  }
@@ -1843,7 +1843,7 @@
1857  else if (parent_i & !parent_k)
1858  {
1859 
-
1860  if (Array(k, j) == 1u)
+
1860  if (Array(k, j) == 1u)
1861  return 0.0;
1862 
1863  for (auto off = 0u; off < Array.ncol(); ++off)
@@ -1852,7 +1852,7 @@
1866  if (off == j)
1867  continue;
1868 
-
1869  if ((Array(i, off) == 1u) && (Array(k, off) == 0u))
+
1869  if ((Array(i, off) == 1u) && (Array(k, off) == 0u))
1870  res += 1.0;
1871 
1872  }
@@ -1861,7 +1861,7 @@
1875  else if (!parent_i & parent_k)
1876  {
1877 
-
1878  if (Array(k, j) == 0u)
+
1878  if (Array(k, j) == 0u)
1879  return 0.0;
1880 
1881  for (auto off = 0u; off < Array.ncol(); ++off)
@@ -1870,7 +1870,7 @@
1884  if (off == j)
1885  continue;
1886 
-
1887  if ((Array(i, off) == 0u) && (Array(k, off) == 1u))
+
1887  if ((Array(i, off) == 0u) && (Array(k, off) == 1u))
1888  res += 1.0;
1889 
1890  }
@@ -1879,7 +1879,7 @@
1893  else
1894  {
1895 
-
1896  if (Array(k, j) == 0u)
+
1896  if (Array(k, j) == 0u)
1897  return 0.0;
1898 
1899  for (auto off = 0u; off < Array.ncol(); ++off)
@@ -1888,7 +1888,7 @@
1902  if (off == j)
1903  continue;
1904 
-
1905  if ((Array(i, off) == 1u) && (Array(k, off) == 1u))
+
1905  if ((Array(i, off) == 1u) && (Array(k, off) == 1u))
1906  res += 1.0;
1907 
1908  }
@@ -1943,13 +1943,13 @@
1962  // Not in the scope
1963  auto funA = data[1u];
1964  auto funB = data[2u];
-
1965  if ((funA != i) && (funB != i))
+
1965  if ((funA != i) && (funB != i))
1966  return 0.0;
1967 
-
1968  size_t k = (funA == i) ? funB : funA;
+
1968  size_t k = (funA == i) ? funB : funA;
1969 
1970  double res = 0.0;
-
1971  if (Array(k, j) == 1)
+
1971  if (Array(k, j) == 1)
1972  {
1973 
1974  for (auto off = 0u; off < Array.ncol(); ++off)
@@ -1957,7 +1957,7 @@
1976  if (off == j)
1977  continue;
1978 
-
1979  if ((Array(i,off) == 0u) && (Array(k,off) == 0u))
+
1979  if ((Array(i,off) == 0u) && (Array(k,off) == 0u))
1980  res -= 1.0;
1981  }
1982 
@@ -1971,18 +1971,18 @@
1990  if (off == j)
1991  continue;
1992 
-
1993  if ((Array(i, off) == 1u))
+
1993  if ((Array(i, off) == 1u))
1994  {
1995 
1996  // j: (0,0)\‍(1,0) -> (1,0)\‍(1,0), so less 1
-
1997  if (Array(k, off) == 0u)
+
1997  if (Array(k, off) == 0u)
1998  res -= 1.0;
1999 
2000  }
2001  else
2002  {
2003 
-
2004  if (Array(k, off) == 1u)
+
2004  if (Array(k, off) == 1u)
2005  // j: (0,0)\‍(0,1) -> (1,0)\‍(0,1), so less 1
2006  res -= 1.0;
2007  else
@@ -2106,8 +2106,8 @@
res
return res
Definition: counters-meat.hpp:265
data
Data_Type &&counter_ data(std::move(counter_.data))
-
i
size_t i
Definition: counters-meat.hpp:83
j
size_t size_t j
Definition: counters-meat.hpp:84
+
i
size_t i
Definition: counters-meat.hpp:83
PhyloCounters
barry::Counters< PhyloArray, PhyloCounterData > PhyloCounters
Definition: geese-types.hpp:106
PhyloSupport
barry::Support< PhyloArray, PhyloCounterData, PhyloRuleData, PhyloRuleDynData > PhyloSupport
Definition: geese-types.hpp:114
counter_overall_gains
void counter_overall_gains(PhyloCounters *counters, size_t duplication=Geese::etype_default)
Overall functional gains.
Definition: counters.hpp:58
@@ -2141,7 +2141,6 @@
counter_maxfuns
void counter_maxfuns(PhyloCounters *counters, size_t lb, size_t ub, size_t duplication=Geese::etype_default)
Cap the number of functions per gene.
Definition: counters.hpp:529
counter_pairwise_first_gain
void counter_pairwise_first_gain(PhyloCounters *counters, size_t nfunA, size_t nfunB, size_t duplication=Geese::etype_default)
Used when all the functions are in 0 (like the root node prob.)
Definition: counters.hpp:1948
rule_dyn_limit_changes
void rule_dyn_limit_changes(PhyloSupport *support, size_t pos, size_t lb, size_t ub, size_t duplication=Geese::etype_default)
Overall functional gains.
Definition: counters.hpp:2058
-
k
size_t k
Definition: model-meat.hpp:1294
@@ -2149,7 +2148,7 @@ diff --git a/geese_8hpp.html b/geese_8hpp.html index 6375bc253..4e8d0ce87 100644 --- a/geese_8hpp.html +++ b/geese_8hpp.html @@ -148,7 +148,7 @@ diff --git a/geese_8hpp_source.html b/geese_8hpp_source.html index 4d2ddaaaa..33fe3bd3a 100644 --- a/geese_8hpp_source.html +++ b/geese_8hpp_source.html @@ -146,7 +146,7 @@ diff --git a/globals.html b/globals.html index 570daf954..2eaaa24e6 100644 --- a/globals.html +++ b/globals.html @@ -95,9 +95,6 @@
Here is a list of all file members with links to the files they belong to:

- a -

    -
  • a -: model-meat.hpp -
  • add_dims : counters-meat.hpp
    • @@ -107,7 +104,7 @@

    - a -

      diff --git a/globals_b.html b/globals_b.html index 101f12ac3..38a5f77b2 100644 --- a/globals_b.html +++ b/globals_b.html @@ -119,6 +119,9 @@

      - b -

      • BARRY_MAX_NUM_ELEMENTS : barry-configuration.hpp
        • +
      • BARRY_NCORES_ARG +: barry-macros.hpp +
      • BARRY_ONE : barry-macros.hpp
        • @@ -161,8 +164,8 @@

        - b -

        • BDENSE_TEMPLATE : barraydense-meat-operators.hpp
          • -
        • BDENSE_TEMPLATE_ARGS() -: barraydense-meat-operators.hpp +
        • BDENSE_TEMPLATE_ARGS +: barraydense-meat-operators.hpp
        • BDENSE_TYPE : barraydense-meat-operators.hpp @@ -182,7 +185,7 @@

          - b -

            diff --git a/globals_c.html b/globals_c.html index aafec402d..5e0479bfd 100644 --- a/globals_c.html +++ b/globals_c.html @@ -112,11 +112,9 @@

            - c -

            • count_fun_ : counters-meat.hpp -, model-meat.hpp
            • counter : counters-meat.hpp -, model-meat.hpp , statscounter-meat.hpp
            • counter_ @@ -222,7 +220,7 @@

              - c -

                : network.hpp
              • counter_isolates() -: network.hpp +: network.hpp
              • counter_istar2() : network.hpp @@ -327,7 +325,7 @@

                - c -

                  : counters.hpp
                • counter_ttriads() -: network.hpp +: network.hpp
                • COUNTER_TYPE : counters-meat.hpp @@ -336,8 +334,7 @@

                  - c -

                    : statscounter-meat.hpp
                  • counters_ -: model-meat.hpp -, statscounter-meat.hpp +: statscounter-meat.hpp
                  • COUNTERS_TEMPLATE : counters-meat.hpp @@ -384,9 +381,6 @@

                    - c -

                    • CSS_TRUE_CELLS : network-css.hpp
                      • -
                    • cumprob -: model-meat.hpp -
                    • current_stats : statscounter-meat.hpp
                      • @@ -396,7 +390,7 @@

                      - c -

                        diff --git a/globals_d.html b/globals_d.html index 44b388321..8f99cf1f4 100644 --- a/globals_d.html +++ b/globals_d.html @@ -99,14 +99,7 @@

                        - d -

                          : counters-meat.hpp
                        • data_ -: counters-meat.hpp -, model-meat.hpp -
                          • -
                        • Data_Counter_Type -: model-meat.hpp -
                          • -
                        • Data_Rule_Type -: model-meat.hpp +: counters-meat.hpp
                        • DEFM_COUNTER : counters.hpp @@ -162,12 +155,6 @@

                          - d -

                          • DEFMSupport : defm-types.hpp
                            • -
                          • delete_rules -: model-meat.hpp -
                            • -
                          • delete_rules_dyn -: model-meat.hpp -
                          • desc() : counters-meat.hpp
                            • @@ -180,7 +167,7 @@

                            - d -

                              diff --git a/globals_defs.html b/globals_defs.html index 60ff9c607..f1f2ef998 100644 --- a/globals_defs.html +++ b/globals_defs.html @@ -119,6 +119,9 @@

                              - b -

                              • BARRY_MAX_NUM_ELEMENTS : barry-configuration.hpp
                                • +
                              • BARRY_NCORES_ARG +: barry-macros.hpp +
                              • BARRY_ONE : barry-macros.hpp
                                • @@ -300,15 +303,6 @@

                                - m -

                                @@ -423,7 +417,7 @@

                                - z -

                                  diff --git a/globals_e.html b/globals_e.html index 16e30b833..474093967 100644 --- a/globals_e.html +++ b/globals_e.html @@ -95,9 +95,6 @@
                                  Here is a list of all file members with links to the files they belong to:

                                  - e -

                                    -
                                  • else -: model-meat.hpp -
                                  • EmptyArray : statscounter-meat.hpp
                                    • @@ -107,7 +104,7 @@

                                    - e -

                                      diff --git a/globals_f.html b/globals_f.html index a81d25b1d..0e4a6c306 100644 --- a/globals_f.html +++ b/globals_f.html @@ -101,18 +101,13 @@

                                      - f -

                                      @@ -120,7 +115,7 @@

                                      - f -

                                        diff --git a/globals_func.html b/globals_func.html index d6f36309c..55507637b 100644 --- a/globals_func.html +++ b/globals_func.html @@ -117,12 +117,361 @@

                                        - b -

                                        + + +

                                        - c -

                                        + + +

                                        - d -

                                        + + +

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                                        + + +

                                        - g -

                                        + + +

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                                        + + +

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                                        + + +

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                                        - o -

                                        + + +

                                        - r -

                                        + + +

                                        - s -

                                        + + +

                                        - u -

                                        + + +

                                        - v -

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                                        barry: Your go-to motif accountant -  0.0-1 -
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                                        Full enumeration of sample space and fast count of sufficient statistics for binary arrays
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                                        barry: Your go-to motif accountant -  0.0-1 -
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                                        - g -

                                          diff --git a/globals_h.html b/globals_h.html index b99ad5798..e67b280f4 100644 --- a/globals_h.html +++ b/globals_h.html @@ -113,7 +113,7 @@

                                          - h -

                                            diff --git a/globals_i.html b/globals_i.html index cc02bdd5d..50ddfe85d 100644 --- a/globals_i.html +++ b/globals_i.html @@ -96,15 +96,10 @@

                                            - i -

                                            • i -: model-meat.hpp -, counters-meat.hpp -
                                              • -
                                            • i_matches -: model-meat.hpp +: counters-meat.hpp
                                            • if() : counters-meat.hpp -, model-meat.hpp
                                            • IF_MATCHES : counters.hpp @@ -117,14 +112,10 @@

                                              - i -

                                              • init_fun_ : counters-meat.hpp -, model-meat.hpp
                                              • INITIALIZED : geese-bones.hpp
                                                • -
                                              • insert_cell() -: model-meat.hpp -
                                              • IS_DUPLICATION : counters.hpp
                                                • @@ -140,7 +131,7 @@

                                                - i -

                                                  diff --git a/globals_j.html b/globals_j.html index 08d61b3b0..6c8c987d1 100644 --- a/globals_j.html +++ b/globals_j.html @@ -97,7 +97,6 @@

                                                  - j -

                                                  @@ -106,7 +105,7 @@

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                                                    diff --git a/globals_k.html b/globals_k.html index 5d30e4784..dc57b541b 100644 --- a/globals_k.html +++ b/globals_k.html @@ -95,12 +95,6 @@
                                                    Here is a list of all file members with links to the files they belong to:

                                                    - k -

                                                      -
                                                    • k -: model-meat.hpp -
                                                      • -
                                                    • key -: model-meat.hpp -
                                                    • keygen_defm() : defm-meat.hpp
                                                      • @@ -113,7 +107,7 @@

                                                      - k -

                                                        diff --git a/globals_l.html b/globals_l.html index 789f186e3..5522430eb 100644 --- a/globals_l.html +++ b/globals_l.html @@ -98,16 +98,13 @@

                                                        - l -

                                                        diff --git a/globals_m.html b/globals_m.html index a11825fa4..25f5de052 100644 --- a/globals_m.html +++ b/globals_m.html @@ -107,22 +107,13 @@

                                                        - m -

                                                        diff --git a/globals_n.html b/globals_n.html index 0335a6661..cd4948c53 100644 --- a/globals_n.html +++ b/globals_n.html @@ -158,7 +158,7 @@

                                                        - n -

                                                          diff --git a/globals_o.html b/globals_o.html index 5b1254ca5..a9dff0fed 100644 --- a/globals_o.html +++ b/globals_o.html @@ -104,7 +104,7 @@

                                                          - o -

                                                            diff --git a/globals_p.html b/globals_p.html index 4d5f0776e..aafb32f8a 100644 --- a/globals_p.html +++ b/globals_p.html @@ -95,9 +95,6 @@
                                                            Here is a list of all file members with links to the files they belong to:

                                                            - p -

                                                              -
                                                            • params -: model-meat.hpp -
                                                            • PHYLO_CHECK_MISSING : counters.hpp
                                                              • @@ -145,12 +142,12 @@

                                                              - p -

                                                              • POS : barraydense-meat-operators.hpp -, geese-types.hpp -, barraydenserow-bones.hpp -, barraydensecol-bones.hpp -, barraydensecell-meat.hpp -, barraydensecell-bones.hpp , barraydense-meat.hpp +, barraydensecell-bones.hpp +, barraydensecell-meat.hpp +, barraydensecol-bones.hpp +, barraydenserow-bones.hpp +, geese-types.hpp
                                                              • POS_N : barraydense-meat-operators.hpp @@ -161,22 +158,13 @@

                                                                - p -

                                                                diff --git a/globals_r.html b/globals_r.html index 6850239fb..318692274 100644 --- a/globals_r.html +++ b/globals_r.html @@ -95,23 +95,15 @@
                                                                Here is a list of all file members with links to the files they belong to:

                                                                - r -

                                                                  -
                                                                • r -: model-meat.hpp -
                                                                • res : counters-meat.hpp
                                                                  • -
                                                                • reserve() -: model-meat.hpp -
                                                                • resize() : statscounter-meat.hpp
                                                                • return : counters-meat.hpp -, model-meat.hpp , statscounter-meat.hpp -, model-meat.hpp
                                                                • rhs : barray-meat-operators.hpp @@ -128,9 +120,6 @@

                                                                  - r -

                                                                  • rule_dyn_limit_changes() : counters.hpp
                                                                    • -
                                                                  • rule_fun_ -: model-meat.hpp -
                                                                  • rule_fun_default() : rules-bones.hpp
                                                                    • @@ -144,18 +133,9 @@

                                                                    - r -

                                                                    • RULE_LAMBDA : barry.hpp
                                                                      • -
                                                                    • rules -: model-meat.hpp -
                                                                      • -
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                                                                    • rules_dont_become_zero() : counters.hpp
                                                                      • -
                                                                    • rules_dyn -: model-meat.hpp -
                                                                    • rules_markov_fixed() : counters.hpp
                                                                      • @@ -168,7 +148,7 @@

                                                                      - r -

                                                                        diff --git a/globals_s.html b/globals_s.html index c99054f54..d257b4a95 100644 --- a/globals_s.html +++ b/globals_s.html @@ -95,29 +95,11 @@
                                                                        Here is a list of all file members with links to the files they belong to:

                                                                        - s -

                                                                          -
                                                                        • set_counters() -: model-meat.hpp -
                                                                          • -
                                                                        • set_rules() -: model-meat.hpp -
                                                                          • -
                                                                        • set_rules_dyn() -: model-meat.hpp -
                                                                          • -
                                                                        • size() -: model-meat.hpp -
                                                                        • sort_array() : typedefs.hpp
                                                                          • -
                                                                        • stats -: model-meat.hpp -
                                                                          • -
                                                                        • stats_support_n_arrays -: model-meat.hpp -
                                                                          • -
                                                                        • STATSCOUNTER_TEMPLATE() -: statscounter-meat.hpp +
                                                                        • STATSCOUNTER_TEMPLATE +: statscounter-meat.hpp
                                                                        • STATSCOUNTER_TEMPLATE_ARGS : statscounter-meat.hpp @@ -131,7 +113,7 @@

                                                                          - s -

                                                                            diff --git a/globals_t.html b/globals_t.html index 2f4afeea4..a8118ddf7 100644 --- a/globals_t.html +++ b/globals_t.html @@ -95,15 +95,9 @@
                                                                            Here is a list of all file members with links to the files they belong to:

                                                                            - t -

                                                                              -
                                                                            • temp_stats() -: model-meat.hpp -
                                                                            • this : barray-meat-operators.hpp
                                                                              • -
                                                                            • tmp_counts -: model-meat.hpp -
                                                                            • TMP_HASHER_CALL : counters-meat.hpp
                                                                              • @@ -113,7 +107,7 @@

                                                                              - t -

                                                                                diff --git a/globals_type.html b/globals_type.html index bc32038e7..da84fa09c 100644 --- a/globals_type.html +++ b/globals_type.html @@ -242,7 +242,7 @@

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                                                                                  diff --git a/globals_u.html b/globals_u.html index 2d537a18e..c2f6c9bb9 100644 --- a/globals_u.html +++ b/globals_u.html @@ -101,16 +101,13 @@

                                                                                  - u -

                                                                                  diff --git a/globals_v.html b/globals_v.html index b8e77f4a9..cdb923c34 100644 --- a/globals_v.html +++ b/globals_v.html @@ -116,7 +116,7 @@

                                                                                  - v -

                                                                                    diff --git a/globals_vars.html b/globals_vars.html index ba59f67b1..cefd00344 100644 --- a/globals_vars.html +++ b/globals_vars.html @@ -92,26 +92,15 @@
                                                                                    -  - -

                                                                                    - a -

                                                                                    diff --git a/globals_z.html b/globals_z.html index c92b0ef0f..c458ec627 100644 --- a/globals_z.html +++ b/globals_z.html @@ -106,7 +106,7 @@

                                                                                    - z -

                                                                                      diff --git a/graph_legend.html b/graph_legend.html index 8d496f2b4..31eee71bb 100644 --- a/graph_legend.html +++ b/graph_legend.html @@ -161,7 +161,7 @@ diff --git a/group__counters-network.html b/group__counters-network.html index cea156815..e609b18a4 100644 --- a/group__counters-network.html +++ b/group__counters-network.html @@ -209,7 +209,7 @@ void counter_transition_formula (DEFMCounters *counters, std::string formula, size_t m_order, size_t n_y, int covar_index=-1, std::string vname="", const std::vector< std::string > *x_names=nullptr, const std::vector< std::string > *y_names=nullptr)  Prevalence of ones. More...
                                                                                        -void counter_fixed_effect (DEFMCounters *counters, int covar_index, double k, std::string vname="", const std::vector< std::string > *x_names=nullptr) +void counter_fixed_effect (DEFMCounters *counters, int covar_index, double k, std::string vname="", const std::vector< std::string > *x_names=nullptr)  Prevalence of ones. More...
                                                                                        @@ -221,7 +221,7 @@ - + @@ -1698,7 +1698,7 @@

                                                                                      diff --git a/group__counters-phylo.html b/group__counters-phylo.html index f6f627007..02ecc98f5 100644 --- a/group__counters-phylo.html +++ b/group__counters-phylo.html @@ -122,7 +122,7 @@

                                                                                      - + @@ -167,7 +167,7 @@ - + @@ -1334,7 +1334,7 @@

                                                                                      diff --git a/group__counting.html b/group__counting.html index 289ede53a..dcbbeb5a5 100644 --- a/group__counting.html +++ b/group__counting.html @@ -111,7 +111,7 @@

                                                                                      void rules_markov_fixed (DEFMRules *rules, size_t markov_order)
                                                                                      void rules_markov_fixed (DEFMRules *rules, size_t markov_order)
                                                                                       Number of edges. More...
                                                                                       
                                                                                      void rules_dont_become_zero (DEFMSupport *support, std::vector< size_t > ids)
                                                                                      void counter_gains (PhyloCounters *counters, std::vector< size_t > nfun, size_t duplication=Geese::etype_default)
                                                                                       Functional gains for a specific function (nfun). More...
                                                                                       
                                                                                      void counter_gains_k_offspring (PhyloCounters *counters, std::vector< size_t > nfun, size_t k=1u, size_t duplication=Geese::etype_default)
                                                                                      void counter_gains_k_offspring (PhyloCounters *counters, std::vector< size_t > nfun, size_t k=1u, size_t duplication=Geese::etype_default)
                                                                                       k genes gain function nfun More...
                                                                                       
                                                                                      void counter_genes_changing (PhyloCounters *counters, size_t duplication=Geese::etype_default)
                                                                                      void counter_co_opt (PhyloCounters *counters, size_t nfunA, size_t nfunB, size_t duplication=Geese::etype_default)
                                                                                       Function co-opting. More...
                                                                                       
                                                                                      void counter_k_genes_changing (PhyloCounters *counters, size_t k, size_t duplication=Geese::etype_default)
                                                                                      void counter_k_genes_changing (PhyloCounters *counters, size_t k, size_t duplication=Geese::etype_default)
                                                                                       Indicator function. Equals to one if \(k\) genes changed and zero otherwise. More...
                                                                                       
                                                                                      void counter_less_than_p_prop_genes_changing (PhyloCounters *counters, double p, size_t duplication=Geese::etype_default)
                                                                                      - + @@ -125,10 +125,10 @@ - + - + @@ -140,7 +140,7 @@ - + @@ -185,7 +185,7 @@ - + @@ -335,7 +335,7 @@

                                                                                      - + @@ -354,18 +354,18 @@

                                                                                      hasher = [cov](const DEFMArray & array, DEFMCounterData * d) { \
                                                                                      std::vector< double > res; \
                                                                                      /* Adding the column feature */ \
                                                                                      -
                                                                                      for (size_t i = 0u; i < array.nrow(); ++i) \
                                                                                      -
                                                                                      res.push_back(array.D()(i, cov)); \
                                                                                      +
                                                                                      for (size_t i = 0u; i < array.nrow(); ++i) \
                                                                                      +
                                                                                      res.push_back(array.D()(i, cov)); \
                                                                                      /* Adding the fixed dims */ \
                                                                                      -
                                                                                      for (size_t i = 0u; i < (array.nrow() - 1); ++i) \
                                                                                      +
                                                                                      for (size_t i = 0u; i < (array.nrow() - 1); ++i) \
                                                                                      for (size_t j = 0u; j < array.ncol(); ++j) \
                                                                                      -
                                                                                      res.push_back(array(i, j)); \
                                                                                      +
                                                                                      res.push_back(array(i, j)); \
                                                                                      return res;\
                                                                                      };
                                                                                      DEFMCounterData
                                                                                      Data class used to store arbitrary size_t or double vectors.
                                                                                      Definition: defm-types.hpp:64
                                                                                      res
                                                                                      return res
                                                                                      Definition: counters-meat.hpp:265
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      DEFMArray
                                                                                      barry::BArrayDense< int, DEFMData > DEFMArray
                                                                                      Definition: defm-types.hpp:3

                                                                                      Details on the available counters for DEFMworkData can be found in the Network counters section.

                                                                                      @@ -427,16 +427,15 @@

                                                                                      #define PHYLO_COUNTER_LAMBDA

                                                                                      - +

                                                                                      Macros

                                                                                      #define MAKE_DEFM_HASHER(hasher, a, cov)
                                                                                      #define MAKE_DEFM_HASHER(hasher, a, cov)
                                                                                       
                                                                                      #define MAKE_DUPL_VARS()
                                                                                       
                                                                                       
                                                                                      #define IF_NOTMATCHES()
                                                                                       
                                                                                      #define PHYLO_COUNTER_LAMBDA(a)
                                                                                      #define PHYLO_COUNTER_LAMBDA(a)
                                                                                       Extension of a simple counter. More...
                                                                                       
                                                                                      #define PHYLO_RULE_DYN_LAMBDA(a)
                                                                                      #define PHYLO_RULE_DYN_LAMBDA(a)
                                                                                       
                                                                                      #define PHYLO_CHECK_MISSING()
                                                                                       
                                                                                      void counter_gains (PhyloCounters *counters, std::vector< size_t > nfun, size_t duplication=Geese::etype_default)
                                                                                       Functional gains for a specific function (nfun). More...
                                                                                       
                                                                                      void counter_gains_k_offspring (PhyloCounters *counters, std::vector< size_t > nfun, size_t k=1u, size_t duplication=Geese::etype_default)
                                                                                      void counter_gains_k_offspring (PhyloCounters *counters, std::vector< size_t > nfun, size_t k=1u, size_t duplication=Geese::etype_default)
                                                                                       k genes gain function nfun More...
                                                                                       
                                                                                      void counter_genes_changing (PhyloCounters *counters, size_t duplication=Geese::etype_default)
                                                                                      void counter_co_opt (PhyloCounters *counters, size_t nfunA, size_t nfunB, size_t duplication=Geese::etype_default)
                                                                                       Function co-opting. More...
                                                                                       
                                                                                      void counter_k_genes_changing (PhyloCounters *counters, size_t k, size_t duplication=Geese::etype_default)
                                                                                      void counter_k_genes_changing (PhyloCounters *counters, size_t k, size_t duplication=Geese::etype_default)
                                                                                       Indicator function. Equals to one if \(k\) genes changed and zero otherwise. More...
                                                                                       
                                                                                      void counter_less_than_p_prop_genes_changing (PhyloCounters *counters, double p, size_t duplication=Geese::etype_default)
                                                                                       a, a,
                                                                                      (  a)a)
                                                                                      -Value:
                                                                                      barry::Counter_fun_type<PhyloArray, PhyloCounterData> a = \
                                                                                      -
                                                                                      [](const PhyloArray & Array, size_t i, size_t j, PhyloCounterData & data)
                                                                                      +Value:
                                                                                      barry::Counter_fun_type<PhyloArray, PhyloCounterData> a = \
                                                                                      +
                                                                                      [](const PhyloArray & Array, size_t i, size_t j, PhyloCounterData & data)
                                                                                      PhyloArray
                                                                                      barry::BArrayDense< size_t, NodeData > PhyloArray
                                                                                      Definition: geese-types.hpp:104
                                                                                      -
                                                                                      a
                                                                                      size_t a
                                                                                      Definition: model-meat.hpp:1287

                                                                                      Extension of a simple counter.

                                                                                      It allows specifying extra arguments, in particular, the corresponding sets of rows to which this statistic may be relevant. This could be important in the case of, for example, counting correlation type statistics between function 1 and 2, and between function 1 and 3.

                                                                                      @@ -455,13 +454,13 @@

                                                                                      #define PHYLO_RULE_DYN_LAMBDA (   - a) + a)

                                                                                      -Value:
                                                                                      barry::Rule_fun_type<PhyloArray, PhyloRuleDynData> a = \
                                                                                      -
                                                                                      [](const PhyloArray & Array, size_t i, size_t j, PhyloRuleDynData & data)
                                                                                      +Value:
                                                                                      barry::Rule_fun_type<PhyloArray, PhyloRuleDynData> a = \
                                                                                      +
                                                                                      [](const PhyloArray & Array, size_t i, size_t j, PhyloRuleDynData & data)

                                                                                      Definition at line 39 of file counters.hpp.

                                                                                      @@ -1633,7 +1632,7 @@

                                                                                      diff --git a/group__rules-phylo.html b/group__rules-phylo.html index 8fcf5f159..31553c850 100644 --- a/group__rules-phylo.html +++ b/group__rules-phylo.html @@ -126,10 +126,10 @@  DEFMData::DEFMData (DEFMArray *array_, const double *covariates_, size_t obs_start_, size_t X_ncol_, size_t X_nrow_)  Constructor. More...
                                                                                        -double DEFMData::operator() (size_t i, size_t j) const +double DEFMData::operator() (size_t i, size_t j) const  Access to the row (i) colum (j) data. More...
                                                                                        -double DEFMData::at (size_t i, size_t j) const +double DEFMData::at (size_t i, size_t j) const   size_t DEFMData::ncol () const   @@ -143,19 +143,19 @@    DEFMCounterData::DEFMCounterData (const std::vector< size_t > indices_, const std::vector< double > numbers_, const std::vector< bool > logical_, bool is_motif_=true)   -size_t DEFMCounterData::idx (size_t i) const +size_t DEFMCounterData::idx (size_t i) const   -double DEFMCounterData::num (size_t i) const +double DEFMCounterData::num (size_t i) const   -bool DEFMCounterData::is_true (size_t i) const +bool DEFMCounterData::is_true (size_t i) const    DEFMCounterData::~DEFMCounterData ()   -double DEFMRuleData::num (size_t i) const +double DEFMRuleData::num (size_t i) const   -size_t DEFMRuleData::idx (size_t i) const +size_t DEFMRuleData::idx (size_t i) const   -bool DEFMRuleData::is_true (size_t i) const +bool DEFMRuleData::is_true (size_t i) const    DEFMRuleData::DEFMRuleData ()   @@ -1465,7 +1465,7 @@

                                                                                      diff --git a/group__stat-models.html b/group__stat-models.html index acc15d356..8c648fabb 100644 --- a/group__stat-models.html +++ b/group__stat-models.html @@ -121,7 +121,7 @@ diff --git a/group__stat-models.js b/group__stat-models.js index 2b667f7b4..1f535d540 100644 --- a/group__stat-models.js +++ b/group__stat-models.js @@ -16,25 +16,25 @@ var group__stat_models = [ "colnames", "class_model.html#a61b7baf9d45f885832db74fb9cd99c4d", null ], [ "conditional_prob", "class_model.html#a3f13aa5080ce580a11892cf6a69fee64", null ], [ "gen_key", "class_model.html#a5ab59e34639b590094bc2716d056e78c", null ], - [ "get_arrays2support", "class_model.html#a6775390b015ca4a012dea92bcab562f3", null ], - [ "get_counters", "class_model.html#ab79035281970e647253bf5c26481e588", null ], + [ "get_arrays2support", "class_model.html#ab705e7531998b61c1358c6cbef773e0d", null ], + [ "get_counters", "class_model.html#a2345f3e51002d81bd60cb0b14f006dbd", null ], [ "get_norm_const", "class_model.html#af5a931e39999583e4fe39ebc6db63a26", null ], - [ "get_pset", "class_model.html#a060a8f1c30146e6363c480ffb2fed1bd", null ], - [ "get_pset_arrays", "class_model.html#a43d3242876ee289ecd4e92d8a953cacb", null ], - [ "get_pset_probs", "class_model.html#a38a7545244ac95aa624496dbf1d71120", null ], - [ "get_pset_stats", "class_model.html#aa22bb94f9de4c87671580d67e8ae66df", null ], - [ "get_pset_stats", "class_model.html#ae21259571924ce4abbd3e2f5283cf939", null ], - [ "get_rengine", "class_model.html#ab98a5c50c97fca438b0dc959fe9d5448", null ], - [ "get_rules", "class_model.html#a4c9d8b857f82d69275f120f2461072b8", null ], - [ "get_rules_dyn", "class_model.html#aff4a65facf467f1857160abc9cb720f2", null ], - [ "get_stats_support", "class_model.html#ae32b03e221b22c30eff464dc75787061", null ], - [ "get_stats_target", "class_model.html#a6eacbc0a8bb76ae183ec9cc112767dd6", null ], - [ "get_support_fun", "class_model.html#a0a5e28f9d316bbc914a6d8f24071f8c1", null ], - [ "likelihood", "class_model.html#a42cc1109ccaf9b016a1c1787cd356c0b", null ], - [ "likelihood", "class_model.html#a778f76803109eec3d229ea7333a25c9d", null ], - [ "likelihood", "class_model.html#ad20729924815b8f554a6777261b053f8", null ], - [ "likelihood", "class_model.html#aca89061a811d102768b21455a82daefe", null ], - [ "likelihood_total", "class_model.html#a849c382c401986612056d6fdf043deb4", null ], + [ "get_pset", "class_model.html#aefb5399f2e396d34eb523e00c7d89140", null ], + [ "get_pset_arrays", "class_model.html#a567fbbecd8a77f62ada9535f1e56588f", null ], + [ "get_pset_probs", "class_model.html#a248d9516ebc938e2ab5df4f4f9d78121", null ], + [ "get_pset_stats", "class_model.html#a453d05dbfcef337c385afc7f2000d56b", null ], + [ "get_pset_stats", "class_model.html#ab19a8398b4f3fb8a21f8ed89aec2fbf7", null ], + [ "get_rengine", "class_model.html#a02cac4f649946705bfb4d69bc3a3576f", null ], + [ "get_rules", "class_model.html#a8796a5e54c0ba505129db2bc1e452d0d", null ], + [ "get_rules_dyn", "class_model.html#aff4c85b28ba08c67b6d3308cf94fc30a", null ], + [ "get_stats_support", "class_model.html#a35e9c4103deb9e2deda35c2c61b30289", null ], + [ "get_stats_target", "class_model.html#a5414f4d58c598c844bf0e7885e06488a", null ], + [ "get_support_fun", "class_model.html#a5a887a9d87a1f86ccc783fd27a0a1ddc", null ], + [ "likelihood", "class_model.html#ad1eb14faf48bf21732956f3ff27813b2", null ], + [ "likelihood", "class_model.html#ab32cd7afb0aceba4517db6f3f666ef9f", null ], + [ "likelihood", "class_model.html#a58131c38f2fa6820d513f6b145bc2589", null ], + [ "likelihood", "class_model.html#a5838b135cd9bf4b9609aaf2e015da1e8", null ], + [ "likelihood_total", "class_model.html#a42aee976ba5f79051e77798cefa7cda1", null ], [ "nrules", "class_model.html#a6a1213e74dd4d7ce7b0071a664b6f3b3", null ], [ "nrules_dyn", "class_model.html#a9a9ea5238be86c147f9ec264eb51b984", null ], [ "nterms", "class_model.html#a79ebbea31dc3742c37eba173c25acd5d", null ], @@ -90,7 +90,7 @@ var group__stat_models = [ "get_stats_target", "class_flock.html#a26462201318e4bf34756a2a14e2cc3fb", null ], [ "get_support_fun", "class_flock.html#add876188b5f16af037525e71eaf7fc05", null ], [ "init", "class_flock.html#a5ddef5ec4a7b150a354db11bb6b0c593", null ], - [ "likelihood_joint", "class_flock.html#a275193d11c7ce3b8ec5dc18c8fab3e2e", null ], + [ "likelihood_joint", "class_flock.html#a7bcad6b3c794cefc1b4bb613d13ddf71", null ], [ "nfuns", "class_flock.html#a55cf3311be1c2129466a666bbe90a3fb", null ], [ "nleafs", "class_flock.html#a68af1602108455f9d339bc4c2994e9ab", null ], [ "nnodes", "class_flock.html#ae1f4eb8ade1c7f369e1f1eddbced3b2b", null ], @@ -127,7 +127,7 @@ var group__stat_models = [ "inherit_support", "class_geese.html#aa95abe540b9977592bcc88e77619d070", null ], [ "init", "class_geese.html#a4eec9d20198fde392b7c5ee0060eff05", null ], [ "init_node", "class_geese.html#a3855898a556e2ac1d30529d3bc35f13a", null ], - [ "likelihood", "class_geese.html#a6eb9e15bdf70319857e4ad90baefdece", null ], + [ "likelihood", "class_geese.html#a58fb080f76c71883938b62d5369b6688", null ], [ "likelihood_exhaust", "class_geese.html#af2d4bac42cc7c8287fb6853d50882115", null ], [ "nannotations", "class_geese.html#abfec2a7462cc949246a68d540827205f", null ], [ "nfuns", "class_geese.html#ae569fc1b0ade56fc3ccc4d35214fca81", null ], diff --git a/hierarchy.html b/hierarchy.html index 48a22e95a..84410d43f 100644 --- a/hierarchy.html +++ b/hierarchy.html @@ -161,7 +161,7 @@ diff --git a/index.html b/index.html index e21551f2f..8f161026d 100644 --- a/index.html +++ b/index.html @@ -206,7 +206,7 @@

                                                                                      Code of Conduct

                                                                                      diff --git a/inherits.html b/inherits.html index 9baaa584c..64e2c7c0c 100644 --- a/inherits.html +++ b/inherits.html @@ -367,7 +367,7 @@ diff --git a/latex/barray-bones_8hpp__dep__incl.pdf b/latex/barray-bones_8hpp__dep__incl.pdf index 5f2fdc76e..bc0811b2a 100644 Binary files a/latex/barray-bones_8hpp__dep__incl.pdf and b/latex/barray-bones_8hpp__dep__incl.pdf differ diff --git a/latex/barray-meat-operators_8hpp.tex b/latex/barray-meat-operators_8hpp.tex index 7aa2fa903..b2b728ff3 100644 --- a/latex/barray-meat-operators_8hpp.tex +++ b/latex/barray-meat-operators_8hpp.tex @@ -15,11 +15,11 @@ \item \#define \mbox{\hyperlink{barray-meat-operators_8hpp_a5b8ac6aa8527ed4e649879db889d033b}{BARRAY\+\_\+\+TEMPLATE\+\_\+\+ARGS}}()~$<$typename Cell\+\_\+\+Type, typename Data\+\_\+\+Type$>$ \item -\#define \mbox{\hyperlink{barray-meat-operators_8hpp_af13a653838bf7594b0fb9f15f8a49218}{BARRAY\+\_\+\+TEMPLATE}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~ template \mbox{\hyperlink{barray-meat-operators_8hpp_a6bc423fbf0bf597cd9f254334d29fa0b}{BARRAY\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{barray-meat-operators_8hpp_aa088d077e347efbf290ceeed03ca0d22}{BARRAY\+\_\+\+TYPE}}()\+::b +\#define \mbox{\hyperlink{barray-meat-operators_8hpp_af13a653838bf7594b0fb9f15f8a49218}{BARRAY\+\_\+\+TEMPLATE}}(a, b)~ template \mbox{\hyperlink{barray-meat-operators_8hpp_a6bc423fbf0bf597cd9f254334d29fa0b}{BARRAY\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{barray-meat-operators_8hpp_aa088d077e347efbf290ceeed03ca0d22}{BARRAY\+\_\+\+TYPE}}()\+::b \item -\#define \mbox{\hyperlink{barray-meat-operators_8hpp_a391c25765afb3eb7b8288b21dd2eb16b}{ROW}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]} +\#define \mbox{\hyperlink{barray-meat-operators_8hpp_a391c25765afb3eb7b8288b21dd2eb16b}{ROW}}(a)~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}a\mbox{]} \item -\#define \mbox{\hyperlink{barray-meat-operators_8hpp_ac2a0f8cf6ac7fdad243406f6e3ea0605}{COL}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]} +\#define \mbox{\hyperlink{barray-meat-operators_8hpp_ac2a0f8cf6ac7fdad243406f6e3ea0605}{COL}}(a)~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}a\mbox{]} \end{DoxyCompactItemize} \doxysubsection*{Functions} \begin{DoxyCompactItemize} @@ -30,9 +30,9 @@ \item \mbox{\hyperlink{barray-meat-operators_8hpp_a5211b9c62426c96f954228ab92934207}{BARRAY\+\_\+\+TEMPLATE}} (\mbox{\hyperlink{barray-meat-operators_8hpp_aa088d077e347efbf290ceeed03ca0d22}{BARRAY\+\_\+\+TYPE}}()\&, operator+=)(const \mbox{\hyperlink{class_b_array}{BArray}}$<$ Cell\+\_\+\+Type \item -\mbox{\hyperlink{barray-meat-operators_8hpp_a44e89b848319e743c06fed4347af07b1}{for}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}=0u;\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}$<$ nrow();++\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) for(size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}=0u +\mbox{\hyperlink{barray-meat-operators_8hpp_a44e89b848319e743c06fed4347af07b1}{for}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}=0u;\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}$<$ nrow();++\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) for(size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}=0u \item -\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}$<$ ncol();++\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$ \mbox{\hyperlink{barray-meat-operators_8hpp_a1d69c9c1e7d1940aa5a5ca5571884d16}{operator()}} (\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}})+ +\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}$<$ ncol();++\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$ \mbox{\hyperlink{barray-meat-operators_8hpp_a1d69c9c1e7d1940aa5a5ca5571884d16}{operator()}} (\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}})+ \item \mbox{\hyperlink{barray-meat-operators_8hpp_a2a6d4023d7c9ee5295400b1fa0d16cdb}{BARRAY\+\_\+\+TEMPLATE}} (\mbox{\hyperlink{barray-meat-operators_8hpp_aa088d077e347efbf290ceeed03ca0d22}{BARRAY\+\_\+\+TYPE}}()\&, operator+=)(const Cell\+\_\+\+Type \&\mbox{\hyperlink{barray-meat-operators_8hpp_abc38d91637d0da432c721d98227dd8b0}{rhs}}) \item @@ -49,7 +49,7 @@ \item Data\+\_\+\+Type \& \mbox{\hyperlink{barray-meat-operators_8hpp_abc38d91637d0da432c721d98227dd8b0}{rhs}} \item -\mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} $\ast$ \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} +\mbox{\hyperlink{statscounter-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}{return}} $\ast$ \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} \end{DoxyCompactItemize} @@ -58,7 +58,7 @@ \index{barray-\/meat-\/operators.hpp@{barray-\/meat-\/operators.hpp}!BARRAY\_TEMPLATE@{BARRAY\_TEMPLATE}} \index{BARRAY\_TEMPLATE@{BARRAY\_TEMPLATE}!barray-\/meat-\/operators.hpp@{barray-\/meat-\/operators.hpp}} \doxysubsubsection{\texorpdfstring{BARRAY\_TEMPLATE}{BARRAY\_TEMPLATE}} -{\footnotesize\ttfamily \#define BARRAY\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{barray-meat-operators_8hpp_a6bc423fbf0bf597cd9f254334d29fa0b}{BARRAY\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{barray-meat-operators_8hpp_aa088d077e347efbf290ceeed03ca0d22}{BARRAY\+\_\+\+TYPE}}()\+::b} +{\footnotesize\ttfamily \#define BARRAY\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{barray-meat-operators_8hpp_a6bc423fbf0bf597cd9f254334d29fa0b}{BARRAY\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{barray-meat-operators_8hpp_aa088d077e347efbf290ceeed03ca0d22}{BARRAY\+\_\+\+TYPE}}()\+::b} @@ -88,7 +88,7 @@ \index{barray-\/meat-\/operators.hpp@{barray-\/meat-\/operators.hpp}!COL@{COL}} \index{COL@{COL}!barray-\/meat-\/operators.hpp@{barray-\/meat-\/operators.hpp}} \doxysubsubsection{\texorpdfstring{COL}{COL}} -{\footnotesize\ttfamily \#define COL(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}} +{\footnotesize\ttfamily \#define COL(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}a\mbox{]}} @@ -98,7 +98,7 @@ \index{barray-\/meat-\/operators.hpp@{barray-\/meat-\/operators.hpp}!ROW@{ROW}} \index{ROW@{ROW}!barray-\/meat-\/operators.hpp@{barray-\/meat-\/operators.hpp}} \doxysubsubsection{\texorpdfstring{ROW}{ROW}} -{\footnotesize\ttfamily \#define ROW(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}} +{\footnotesize\ttfamily \#define ROW(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}a\mbox{]}} @@ -189,7 +189,7 @@ \index{barray-\/meat-\/operators.hpp@{barray-\/meat-\/operators.hpp}!operator()@{operator()}} \index{operator()@{operator()}!barray-\/meat-\/operators.hpp@{barray-\/meat-\/operators.hpp}} \doxysubsubsection{\texorpdfstring{operator()()}{operator()()}} -{\footnotesize\ttfamily \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}$<$ ncol(); ++\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$ operator() (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}}]{, }\item[{\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}}]{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}$<$ ncol(); ++\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$ operator() (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}}]{, }\item[{\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}}]{ }\end{DoxyParamCaption})} @@ -216,7 +216,7 @@ \index{barray-\/meat-\/operators.hpp@{barray-\/meat-\/operators.hpp}!this@{this}} \index{this@{this}!barray-\/meat-\/operators.hpp@{barray-\/meat-\/operators.hpp}} \doxysubsubsection{\texorpdfstring{this}{this}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} $\ast$ this} +{\footnotesize\ttfamily \mbox{\hyperlink{statscounter-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}{return}} $\ast$ this} diff --git a/latex/barray-meat-operators_8hpp__dep__incl.pdf b/latex/barray-meat-operators_8hpp__dep__incl.pdf index 6583982d1..e36797548 100644 Binary files a/latex/barray-meat-operators_8hpp__dep__incl.pdf and b/latex/barray-meat-operators_8hpp__dep__incl.pdf differ diff --git a/latex/barray-meat_8hpp.tex b/latex/barray-meat_8hpp.tex index 8ade35a00..58b9e2785 100644 --- a/latex/barray-meat_8hpp.tex +++ b/latex/barray-meat_8hpp.tex @@ -11,9 +11,9 @@ \doxysubsection*{Macros} \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{barray-meat_8hpp_a391c25765afb3eb7b8288b21dd2eb16b}{ROW}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]} +\#define \mbox{\hyperlink{barray-meat_8hpp_a391c25765afb3eb7b8288b21dd2eb16b}{ROW}}(a)~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}a\mbox{]} \item -\#define \mbox{\hyperlink{barray-meat_8hpp_ac2a0f8cf6ac7fdad243406f6e3ea0605}{COL}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]} +\#define \mbox{\hyperlink{barray-meat_8hpp_ac2a0f8cf6ac7fdad243406f6e3ea0605}{COL}}(a)~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}a\mbox{]} \end{DoxyCompactItemize} @@ -22,7 +22,7 @@ \index{barray-\/meat.hpp@{barray-\/meat.hpp}!COL@{COL}} \index{COL@{COL}!barray-\/meat.hpp@{barray-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{COL}{COL}} -{\footnotesize\ttfamily \#define COL(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}} +{\footnotesize\ttfamily \#define COL(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}a\mbox{]}} @@ -32,7 +32,7 @@ \index{barray-\/meat.hpp@{barray-\/meat.hpp}!ROW@{ROW}} \index{ROW@{ROW}!barray-\/meat.hpp@{barray-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{ROW}{ROW}} -{\footnotesize\ttfamily \#define ROW(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}} +{\footnotesize\ttfamily \#define ROW(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}a\mbox{]}} diff --git a/latex/barray-meat_8hpp__dep__incl.pdf b/latex/barray-meat_8hpp__dep__incl.pdf index 632bea56b..3ef10c2e6 100644 Binary files a/latex/barray-meat_8hpp__dep__incl.pdf and b/latex/barray-meat_8hpp__dep__incl.pdf differ diff --git a/latex/barraycell-bones_8hpp__dep__incl.pdf b/latex/barraycell-bones_8hpp__dep__incl.pdf index eb1f1ef8f..fc9074273 100644 Binary files a/latex/barraycell-bones_8hpp__dep__incl.pdf and b/latex/barraycell-bones_8hpp__dep__incl.pdf differ diff --git a/latex/barraycell-meat_8hpp__dep__incl.pdf b/latex/barraycell-meat_8hpp__dep__incl.pdf index f9d2963db..ec45e4528 100644 Binary files a/latex/barraycell-meat_8hpp__dep__incl.pdf and b/latex/barraycell-meat_8hpp__dep__incl.pdf differ diff --git a/latex/barraydense-bones_8hpp__dep__incl.pdf b/latex/barraydense-bones_8hpp__dep__incl.pdf index 574b1165a..9d8051dfe 100644 Binary files a/latex/barraydense-bones_8hpp__dep__incl.pdf and b/latex/barraydense-bones_8hpp__dep__incl.pdf differ diff --git a/latex/barraydense-meat-operators_8hpp.tex b/latex/barraydense-meat-operators_8hpp.tex index b2c2f196e..66d0ce144 100644 --- a/latex/barraydense-meat-operators_8hpp.tex +++ b/latex/barraydense-meat-operators_8hpp.tex @@ -15,15 +15,15 @@ \item \#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_a7cf9e244326563007fd13d874b915038}{BDENSE\+\_\+\+TEMPLATE\+\_\+\+ARGS}}()~$<$typename Cell\+\_\+\+Type, typename Data\+\_\+\+Type$>$ \item -\#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_a6efd613571f7d786981173a9f217ad39}{BDENSE\+\_\+\+TEMPLATE}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~ template \mbox{\hyperlink{barraydense-meat-operators_8hpp_a1b6371349659b8ab46a43b50570c19a3}{BDENSE\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{barraydense-meat-operators_8hpp_a604ad355d97cb9591cb6c4ce0a49b3d7}{BDENSE\+\_\+\+TYPE}}()\+::b +\#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_a6efd613571f7d786981173a9f217ad39}{BDENSE\+\_\+\+TEMPLATE}}(a, b)~ template \mbox{\hyperlink{barraydense-meat-operators_8hpp_a1b6371349659b8ab46a43b50570c19a3}{BDENSE\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{barraydense-meat-operators_8hpp_a604ad355d97cb9591cb6c4ce0a49b3d7}{BDENSE\+\_\+\+TYPE}}()\+::b \item -\#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_a391c25765afb3eb7b8288b21dd2eb16b}{ROW}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]} +\#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_a391c25765afb3eb7b8288b21dd2eb16b}{ROW}}(a)~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}a\mbox{]} \item -\#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_ac2a0f8cf6ac7fdad243406f6e3ea0605}{COL}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]} +\#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_ac2a0f8cf6ac7fdad243406f6e3ea0605}{COL}}(a)~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}a\mbox{]} \item -\#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~(b)$\ast$N + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(a, b)~(b)$\ast$N + (a) \item -\#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_a1715b9a21ce267cafd44c884fc4bb72c}{POS\+\_\+N}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b, c)~(b)$\ast$(c) + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barraydense-meat-operators_8hpp_a1715b9a21ce267cafd44c884fc4bb72c}{POS\+\_\+N}}(a, b, c)~(b)$\ast$(c) + (a) \end{DoxyCompactItemize} \doxysubsection*{Functions} \begin{DoxyCompactItemize} @@ -47,7 +47,7 @@ \index{barraydense-\/meat-\/operators.hpp@{barraydense-\/meat-\/operators.hpp}!BDENSE\_TEMPLATE@{BDENSE\_TEMPLATE}} \index{BDENSE\_TEMPLATE@{BDENSE\_TEMPLATE}!barraydense-\/meat-\/operators.hpp@{barraydense-\/meat-\/operators.hpp}} \doxysubsubsection{\texorpdfstring{BDENSE\_TEMPLATE}{BDENSE\_TEMPLATE}} -{\footnotesize\ttfamily \#define BDENSE\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{barraydense-meat-operators_8hpp_a1b6371349659b8ab46a43b50570c19a3}{BDENSE\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{barraydense-meat-operators_8hpp_a604ad355d97cb9591cb6c4ce0a49b3d7}{BDENSE\+\_\+\+TYPE}}()\+::b} +{\footnotesize\ttfamily \#define BDENSE\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{barraydense-meat-operators_8hpp_a1b6371349659b8ab46a43b50570c19a3}{BDENSE\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{barraydense-meat-operators_8hpp_a604ad355d97cb9591cb6c4ce0a49b3d7}{BDENSE\+\_\+\+TYPE}}()\+::b} @@ -77,7 +77,7 @@ \index{barraydense-\/meat-\/operators.hpp@{barraydense-\/meat-\/operators.hpp}!COL@{COL}} \index{COL@{COL}!barraydense-\/meat-\/operators.hpp@{barraydense-\/meat-\/operators.hpp}} \doxysubsubsection{\texorpdfstring{COL}{COL}} -{\footnotesize\ttfamily \#define COL(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}} +{\footnotesize\ttfamily \#define COL(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}a\mbox{]}} @@ -87,7 +87,7 @@ \index{barraydense-\/meat-\/operators.hpp@{barraydense-\/meat-\/operators.hpp}!POS@{POS}} \index{POS@{POS}!barraydense-\/meat-\/operators.hpp@{barraydense-\/meat-\/operators.hpp}} \doxysubsubsection{\texorpdfstring{POS}{POS}} -{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~(b)$\ast$N + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})} +{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~(b)$\ast$N + (a)} @@ -97,7 +97,7 @@ \index{barraydense-\/meat-\/operators.hpp@{barraydense-\/meat-\/operators.hpp}!POS\_N@{POS\_N}} \index{POS\_N@{POS\_N}!barraydense-\/meat-\/operators.hpp@{barraydense-\/meat-\/operators.hpp}} \doxysubsubsection{\texorpdfstring{POS\_N}{POS\_N}} -{\footnotesize\ttfamily \#define POS\+\_\+N(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b, }\item[{}]{c }\end{DoxyParamCaption})~(b)$\ast$(c) + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})} +{\footnotesize\ttfamily \#define POS\+\_\+N(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b, }\item[{}]{c }\end{DoxyParamCaption})~(b)$\ast$(c) + (a)} @@ -107,7 +107,7 @@ \index{barraydense-\/meat-\/operators.hpp@{barraydense-\/meat-\/operators.hpp}!ROW@{ROW}} \index{ROW@{ROW}!barraydense-\/meat-\/operators.hpp@{barraydense-\/meat-\/operators.hpp}} \doxysubsubsection{\texorpdfstring{ROW}{ROW}} -{\footnotesize\ttfamily \#define ROW(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}} +{\footnotesize\ttfamily \#define ROW(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}a\mbox{]}} diff --git a/latex/barraydense-meat-operators_8hpp__dep__incl.pdf b/latex/barraydense-meat-operators_8hpp__dep__incl.pdf index 79ec0d3e3..d151767a3 100644 Binary files a/latex/barraydense-meat-operators_8hpp__dep__incl.pdf and b/latex/barraydense-meat-operators_8hpp__dep__incl.pdf differ diff --git a/latex/barraydense-meat_8hpp.tex b/latex/barraydense-meat_8hpp.tex index 70fad8556..d233c4f88 100644 --- a/latex/barraydense-meat_8hpp.tex +++ b/latex/barraydense-meat_8hpp.tex @@ -11,13 +11,13 @@ \doxysubsection*{Macros} \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{barraydense-meat_8hpp_a391c25765afb3eb7b8288b21dd2eb16b}{ROW}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]} +\#define \mbox{\hyperlink{barraydense-meat_8hpp_a391c25765afb3eb7b8288b21dd2eb16b}{ROW}}(a)~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}a\mbox{]} \item -\#define \mbox{\hyperlink{barraydense-meat_8hpp_ac2a0f8cf6ac7fdad243406f6e3ea0605}{COL}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]} +\#define \mbox{\hyperlink{barraydense-meat_8hpp_ac2a0f8cf6ac7fdad243406f6e3ea0605}{COL}}(a)~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}a\mbox{]} \item -\#define \mbox{\hyperlink{barraydense-meat_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~(b)$\ast$N + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barraydense-meat_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(a, b)~(b)$\ast$N + (a) \item -\#define \mbox{\hyperlink{barraydense-meat_8hpp_a1715b9a21ce267cafd44c884fc4bb72c}{POS\+\_\+N}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b, c)~(b)$\ast$(c) + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barraydense-meat_8hpp_a1715b9a21ce267cafd44c884fc4bb72c}{POS\+\_\+N}}(a, b, c)~(b)$\ast$(c) + (a) \item \#define \mbox{\hyperlink{barraydense-meat_8hpp_a51b85d6bd8e8ab46aa8578ad029fbc54}{ZERO\+\_\+\+CELL}}~static\+\_\+cast$<$Cell\+\_\+\+Type$>$(0.\+0) \end{DoxyCompactItemize} @@ -28,7 +28,7 @@ \index{barraydense-\/meat.hpp@{barraydense-\/meat.hpp}!COL@{COL}} \index{COL@{COL}!barraydense-\/meat.hpp@{barraydense-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{COL}{COL}} -{\footnotesize\ttfamily \#define COL(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}} +{\footnotesize\ttfamily \#define COL(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ji\mbox{[}a\mbox{]}} @@ -38,7 +38,7 @@ \index{barraydense-\/meat.hpp@{barraydense-\/meat.hpp}!POS@{POS}} \index{POS@{POS}!barraydense-\/meat.hpp@{barraydense-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{POS}{POS}} -{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~(b)$\ast$N + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})} +{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~(b)$\ast$N + (a)} @@ -48,7 +48,7 @@ \index{barraydense-\/meat.hpp@{barraydense-\/meat.hpp}!POS\_N@{POS\_N}} \index{POS\_N@{POS\_N}!barraydense-\/meat.hpp@{barraydense-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{POS\_N}{POS\_N}} -{\footnotesize\ttfamily \#define POS\+\_\+N(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b, }\item[{}]{c }\end{DoxyParamCaption})~(b)$\ast$(c) + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})} +{\footnotesize\ttfamily \#define POS\+\_\+N(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b, }\item[{}]{c }\end{DoxyParamCaption})~(b)$\ast$(c) + (a)} @@ -58,7 +58,7 @@ \index{barraydense-\/meat.hpp@{barraydense-\/meat.hpp}!ROW@{ROW}} \index{ROW@{ROW}!barraydense-\/meat.hpp@{barraydense-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{ROW}{ROW}} -{\footnotesize\ttfamily \#define ROW(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}} +{\footnotesize\ttfamily \#define ROW(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}}-\/$>$el\+\_\+ij\mbox{[}a\mbox{]}} diff --git a/latex/barraydense-meat_8hpp__dep__incl.pdf b/latex/barraydense-meat_8hpp__dep__incl.pdf index bb105153a..19ef40809 100644 Binary files a/latex/barraydense-meat_8hpp__dep__incl.pdf and b/latex/barraydense-meat_8hpp__dep__incl.pdf differ diff --git a/latex/barraydensecell-bones_8hpp.tex b/latex/barraydensecell-bones_8hpp.tex index a54c8e48c..7b337ddb0 100644 --- a/latex/barraydensecell-bones_8hpp.tex +++ b/latex/barraydensecell-bones_8hpp.tex @@ -16,7 +16,7 @@ \doxysubsection*{Macros} \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{barraydensecell-bones_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) + (b) $\ast$ N +\#define \mbox{\hyperlink{barraydensecell-bones_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(a, b)~(a) + (b) $\ast$ N \end{DoxyCompactItemize} @@ -25,7 +25,7 @@ \index{barraydensecell-\/bones.hpp@{barraydensecell-\/bones.hpp}!POS@{POS}} \index{POS@{POS}!barraydensecell-\/bones.hpp@{barraydensecell-\/bones.hpp}} \doxysubsubsection{\texorpdfstring{POS}{POS}} -{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) + (b) $\ast$ N} +{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~(a) + (b) $\ast$ N} diff --git a/latex/barraydensecell-bones_8hpp__dep__incl.pdf b/latex/barraydensecell-bones_8hpp__dep__incl.pdf index cd93801f1..3c8310486 100644 Binary files a/latex/barraydensecell-bones_8hpp__dep__incl.pdf and b/latex/barraydensecell-bones_8hpp__dep__incl.pdf differ diff --git a/latex/barraydensecell-meat_8hpp.tex b/latex/barraydensecell-meat_8hpp.tex index 72bccf980..0581b73e2 100644 --- a/latex/barraydensecell-meat_8hpp.tex +++ b/latex/barraydensecell-meat_8hpp.tex @@ -11,7 +11,7 @@ \doxysubsection*{Macros} \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{barraydensecell-meat_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) + (b) $\ast$ dat-\/$>$N +\#define \mbox{\hyperlink{barraydensecell-meat_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(a, b)~(a) + (b) $\ast$ dat-\/$>$N \end{DoxyCompactItemize} @@ -20,7 +20,7 @@ \index{barraydensecell-\/meat.hpp@{barraydensecell-\/meat.hpp}!POS@{POS}} \index{POS@{POS}!barraydensecell-\/meat.hpp@{barraydensecell-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{POS}{POS}} -{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) + (b) $\ast$ dat-\/$>$N} +{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~(a) + (b) $\ast$ dat-\/$>$N} diff --git a/latex/barraydensecell-meat_8hpp__dep__incl.pdf b/latex/barraydensecell-meat_8hpp__dep__incl.pdf index 2238d2717..366b6d73f 100644 Binary files a/latex/barraydensecell-meat_8hpp__dep__incl.pdf and b/latex/barraydensecell-meat_8hpp__dep__incl.pdf differ diff --git a/latex/barraydensecol-bones_8hpp.tex b/latex/barraydensecol-bones_8hpp.tex index 8020a12ee..d682c7eb7 100644 --- a/latex/barraydensecol-bones_8hpp.tex +++ b/latex/barraydensecol-bones_8hpp.tex @@ -18,9 +18,9 @@ \doxysubsection*{Macros} \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{barraydensecol-bones_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~(b)$\ast$N + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barraydensecol-bones_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(a, b)~(b)$\ast$N + (a) \item -\#define \mbox{\hyperlink{barraydensecol-bones_8hpp_a1715b9a21ce267cafd44c884fc4bb72c}{POS\+\_\+N}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b, c)~(b)$\ast$(c) + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barraydensecol-bones_8hpp_a1715b9a21ce267cafd44c884fc4bb72c}{POS\+\_\+N}}(a, b, c)~(b)$\ast$(c) + (a) \item \#define \mbox{\hyperlink{barraydensecol-bones_8hpp_a51b85d6bd8e8ab46aa8578ad029fbc54}{ZERO\+\_\+\+CELL}}~static\+\_\+cast$<$Cell\+\_\+\+Type$>$(0.\+0) \end{DoxyCompactItemize} @@ -31,7 +31,7 @@ \index{barraydensecol-\/bones.hpp@{barraydensecol-\/bones.hpp}!POS@{POS}} \index{POS@{POS}!barraydensecol-\/bones.hpp@{barraydensecol-\/bones.hpp}} \doxysubsubsection{\texorpdfstring{POS}{POS}} -{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~(b)$\ast$N + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})} +{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~(b)$\ast$N + (a)} @@ -41,7 +41,7 @@ \index{barraydensecol-\/bones.hpp@{barraydensecol-\/bones.hpp}!POS\_N@{POS\_N}} \index{POS\_N@{POS\_N}!barraydensecol-\/bones.hpp@{barraydensecol-\/bones.hpp}} \doxysubsubsection{\texorpdfstring{POS\_N}{POS\_N}} -{\footnotesize\ttfamily \#define POS\+\_\+N(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b, }\item[{}]{c }\end{DoxyParamCaption})~(b)$\ast$(c) + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})} +{\footnotesize\ttfamily \#define POS\+\_\+N(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b, }\item[{}]{c }\end{DoxyParamCaption})~(b)$\ast$(c) + (a)} diff --git a/latex/barraydensecol-bones_8hpp__dep__incl.pdf b/latex/barraydensecol-bones_8hpp__dep__incl.pdf index 44ca2386e..400ecec5e 100644 Binary files a/latex/barraydensecol-bones_8hpp__dep__incl.pdf and b/latex/barraydensecol-bones_8hpp__dep__incl.pdf differ diff --git a/latex/barraydenserow-bones_8hpp.tex b/latex/barraydenserow-bones_8hpp.tex index 6fc65727d..d816b60b4 100644 --- a/latex/barraydenserow-bones_8hpp.tex +++ b/latex/barraydenserow-bones_8hpp.tex @@ -18,9 +18,9 @@ \doxysubsection*{Macros} \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{barraydenserow-bones_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~(b) $\ast$ N + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barraydenserow-bones_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(a, b)~(b) $\ast$ N + (a) \item -\#define \mbox{\hyperlink{barraydenserow-bones_8hpp_a1715b9a21ce267cafd44c884fc4bb72c}{POS\+\_\+N}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b, c)~(b)$\ast$(c) + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barraydenserow-bones_8hpp_a1715b9a21ce267cafd44c884fc4bb72c}{POS\+\_\+N}}(a, b, c)~(b)$\ast$(c) + (a) \item \#define \mbox{\hyperlink{barraydenserow-bones_8hpp_a51b85d6bd8e8ab46aa8578ad029fbc54}{ZERO\+\_\+\+CELL}}~static\+\_\+cast$<$ Cell\+\_\+\+Type $>$(0.\+0) \end{DoxyCompactItemize} @@ -31,7 +31,7 @@ \index{barraydenserow-\/bones.hpp@{barraydenserow-\/bones.hpp}!POS@{POS}} \index{POS@{POS}!barraydenserow-\/bones.hpp@{barraydenserow-\/bones.hpp}} \doxysubsubsection{\texorpdfstring{POS}{POS}} -{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~(b) $\ast$ N + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})} +{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~(b) $\ast$ N + (a)} @@ -41,7 +41,7 @@ \index{barraydenserow-\/bones.hpp@{barraydenserow-\/bones.hpp}!POS\_N@{POS\_N}} \index{POS\_N@{POS\_N}!barraydenserow-\/bones.hpp@{barraydenserow-\/bones.hpp}} \doxysubsubsection{\texorpdfstring{POS\_N}{POS\_N}} -{\footnotesize\ttfamily \#define POS\+\_\+N(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b, }\item[{}]{c }\end{DoxyParamCaption})~(b)$\ast$(c) + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})} +{\footnotesize\ttfamily \#define POS\+\_\+N(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b, }\item[{}]{c }\end{DoxyParamCaption})~(b)$\ast$(c) + (a)} diff --git a/latex/barraydenserow-bones_8hpp__dep__incl.pdf b/latex/barraydenserow-bones_8hpp__dep__incl.pdf index 4650f8b2e..ff9b5dd5b 100644 Binary files a/latex/barraydenserow-bones_8hpp__dep__incl.pdf and b/latex/barraydenserow-bones_8hpp__dep__incl.pdf differ diff --git a/latex/barrayrow-meat_8hpp.tex b/latex/barrayrow-meat_8hpp.tex index 5828db0dd..f0c10ea1f 100644 --- a/latex/barrayrow-meat_8hpp.tex +++ b/latex/barrayrow-meat_8hpp.tex @@ -7,7 +7,7 @@ \item \#define \mbox{\hyperlink{barrayrow-meat_8hpp_ac660149d118488fecd60c47e5bc1cd8c}{BROW\+\_\+\+TEMPLATE\+\_\+\+ARGS}}()~$<$typename Cell\+\_\+\+Type, typename Data\+\_\+\+Type$>$ \item -\#define \mbox{\hyperlink{barrayrow-meat_8hpp_a5f37d486037c47f8789fbd7003b88883}{BROW\+\_\+\+TEMPLATE}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~ template \mbox{\hyperlink{barrayrow-meat_8hpp_ac660149d118488fecd60c47e5bc1cd8c}{BROW\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{barrayrow-meat_8hpp_a37ad9de2f45e3f977568961e346221cc}{BROW\+\_\+\+TYPE}}()\+::b +\#define \mbox{\hyperlink{barrayrow-meat_8hpp_a5f37d486037c47f8789fbd7003b88883}{BROW\+\_\+\+TEMPLATE}}(a, b)~ template \mbox{\hyperlink{barrayrow-meat_8hpp_ac660149d118488fecd60c47e5bc1cd8c}{BROW\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{barrayrow-meat_8hpp_a37ad9de2f45e3f977568961e346221cc}{BROW\+\_\+\+TYPE}}()\+::b \end{DoxyCompactItemize} \doxysubsection*{Functions} \begin{DoxyCompactItemize} @@ -29,7 +29,7 @@ \index{barrayrow-\/meat.hpp@{barrayrow-\/meat.hpp}!BROW\_TEMPLATE@{BROW\_TEMPLATE}} \index{BROW\_TEMPLATE@{BROW\_TEMPLATE}!barrayrow-\/meat.hpp@{barrayrow-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{BROW\_TEMPLATE}{BROW\_TEMPLATE}} -{\footnotesize\ttfamily \#define BROW\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{barrayrow-meat_8hpp_ac660149d118488fecd60c47e5bc1cd8c}{BROW\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{barrayrow-meat_8hpp_a37ad9de2f45e3f977568961e346221cc}{BROW\+\_\+\+TYPE}}()\+::b} +{\footnotesize\ttfamily \#define BROW\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{barrayrow-meat_8hpp_ac660149d118488fecd60c47e5bc1cd8c}{BROW\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{barrayrow-meat_8hpp_a37ad9de2f45e3f977568961e346221cc}{BROW\+\_\+\+TYPE}}()\+::b} diff --git a/latex/barry-configuration_8hpp.tex b/latex/barry-configuration_8hpp.tex index 6cb2b2e06..9f8b7b4ea 100644 --- a/latex/barry-configuration_8hpp.tex +++ b/latex/barry-configuration_8hpp.tex @@ -23,7 +23,7 @@ \item \#define \mbox{\hyperlink{barry-configuration_8hpp_aa8fd3df3585111e6734d97092df83f57}{BARRY\+\_\+\+SAFE\+\_\+\+EXP}}~-\/100.\+0 \item -\#define \mbox{\hyperlink{barry-configuration_8hpp_aa3c8e71d6d426f5207d478054c790a13}{BARRY\+\_\+\+ISFINITE}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barry-configuration_8hpp_aa3c8e71d6d426f5207d478054c790a13}{BARRY\+\_\+\+ISFINITE}}(a) \item \#define \mbox{\hyperlink{barry-configuration_8hpp_a5b878dc4fbdf4acdc12646565c2b3b56}{BARRY\+\_\+\+CHECK\+\_\+\+SUPPORT}}(x, maxs) \item @@ -50,7 +50,7 @@ \index{barry-\/configuration.hpp@{barry-\/configuration.hpp}!BARRY\_ISFINITE@{BARRY\_ISFINITE}} \index{BARRY\_ISFINITE@{BARRY\_ISFINITE}!barry-\/configuration.hpp@{barry-\/configuration.hpp}} \doxysubsubsection{\texorpdfstring{BARRY\_ISFINITE}{BARRY\_ISFINITE}} -{\footnotesize\ttfamily \#define BARRY\+\_\+\+ISFINITE(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define BARRY\+\_\+\+ISFINITE(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} diff --git a/latex/barry-configuration_8hpp__dep__incl.pdf b/latex/barry-configuration_8hpp__dep__incl.pdf index 357e75b3b..56c95a712 100644 Binary files a/latex/barry-configuration_8hpp__dep__incl.pdf and b/latex/barry-configuration_8hpp__dep__incl.pdf differ diff --git a/latex/barry-debug_8hpp__dep__incl.pdf b/latex/barry-debug_8hpp__dep__incl.pdf index 440ebcc46..c185dba7a 100644 Binary files a/latex/barry-debug_8hpp__dep__incl.pdf and b/latex/barry-debug_8hpp__dep__incl.pdf differ diff --git a/latex/barry-macros_8hpp.tex b/latex/barry-macros_8hpp.tex index 7df2b4ffc..ac08f23d7 100644 --- a/latex/barry-macros_8hpp.tex +++ b/latex/barry-macros_8hpp.tex @@ -20,10 +20,22 @@ \#define \mbox{\hyperlink{barry-macros_8hpp_af3dfeaadbd4886431a66b1bd69a687fc}{BARRY\+\_\+\+ONE\+\_\+\+DENSE}}~static\+\_\+cast$<$Cell\+\_\+\+Type$>$(1.\+0) \item \#define \mbox{\hyperlink{barry-macros_8hpp_abdbb6194e397040509635a85186d0d23}{BARRY\+\_\+\+UNUSED}}(expr)~do \{ (void)(expr); \} while (0); +\item +\#define \mbox{\hyperlink{barry-macros_8hpp_a1ca54136450bf509406c9def89692fc6}{BARRY\+\_\+\+NCORES\+\_\+\+ARG}}(default)~size\+\_\+t \end{DoxyCompactItemize} \doxysubsection{Macro Definition Documentation} +\mbox{\Hypertarget{barry-macros_8hpp_a1ca54136450bf509406c9def89692fc6}\label{barry-macros_8hpp_a1ca54136450bf509406c9def89692fc6}} +\index{barry-\/macros.hpp@{barry-\/macros.hpp}!BARRY\_NCORES\_ARG@{BARRY\_NCORES\_ARG}} +\index{BARRY\_NCORES\_ARG@{BARRY\_NCORES\_ARG}!barry-\/macros.hpp@{barry-\/macros.hpp}} +\doxysubsubsection{\texorpdfstring{BARRY\_NCORES\_ARG}{BARRY\_NCORES\_ARG}} +{\footnotesize\ttfamily \#define BARRY\+\_\+\+NCORES\+\_\+\+ARG(\begin{DoxyParamCaption}\item[{}]{default }\end{DoxyParamCaption})~size\+\_\+t} + + + +Definition at line 15 of file barry-\/macros.\+hpp. + \mbox{\Hypertarget{barry-macros_8hpp_ad63ca4d357e75f0c4cd3a7eda3e079b5}\label{barry-macros_8hpp_ad63ca4d357e75f0c4cd3a7eda3e079b5}} \index{barry-\/macros.hpp@{barry-\/macros.hpp}!BARRY\_ONE@{BARRY\_ONE}} \index{BARRY\_ONE@{BARRY\_ONE}!barry-\/macros.hpp@{barry-\/macros.hpp}} diff --git a/latex/barry-macros_8hpp__dep__incl.pdf b/latex/barry-macros_8hpp__dep__incl.pdf index 66d9a6ab7..10a754be4 100644 Binary files a/latex/barry-macros_8hpp__dep__incl.pdf and b/latex/barry-macros_8hpp__dep__incl.pdf differ diff --git a/latex/barry_8hpp.tex b/latex/barry_8hpp.tex index b07846349..a4df805a4 100644 --- a/latex/barry_8hpp.tex +++ b/latex/barry_8hpp.tex @@ -76,13 +76,13 @@ \item \#define \mbox{\hyperlink{barry_8hpp_a2ba8357ca62703620968e0b6db92233f}{BARRY\+\_\+\+VERSION}}~\mbox{\hyperlink{barry_8hpp_a15d04cfd243831732f1885b32d9e4fa9}{BARRY\+\_\+\+VERSION\+\_\+\+MAYOR}} \#\# . \#\# \mbox{\hyperlink{barry_8hpp_ac7a7d08916bc1712f6381b5200f17fda}{BARRY\+\_\+\+VERSION\+\_\+\+MINOR}} \item -\#define \mbox{\hyperlink{barry_8hpp_ae7fbc217bad33cff559b1fc41375a8ff}{COUNTER\+\_\+\+FUNCTION}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barry_8hpp_ae7fbc217bad33cff559b1fc41375a8ff}{COUNTER\+\_\+\+FUNCTION}}(a) \item -\#define \mbox{\hyperlink{barry_8hpp_a0dd594d2194ac0aa72b14cc42077331b}{COUNTER\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barry_8hpp_a0dd594d2194ac0aa72b14cc42077331b}{COUNTER\+\_\+\+LAMBDA}}(a) \item -\#define \mbox{\hyperlink{barry_8hpp_aca4359c3356b25fb710d4dbc93d8d5a8}{RULE\+\_\+\+FUNCTION}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barry_8hpp_aca4359c3356b25fb710d4dbc93d8d5a8}{RULE\+\_\+\+FUNCTION}}(a) \item -\#define \mbox{\hyperlink{barry_8hpp_a65e3788fca9f405ff460ff7cfbad63f3}{RULE\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{barry_8hpp_a65e3788fca9f405ff460ff7cfbad63f3}{RULE\+\_\+\+LAMBDA}}(a) \end{DoxyCompactItemize} @@ -95,7 +95,7 @@ -Definition at line 25 of file barry.\+hpp. +Definition at line 29 of file barry.\+hpp. \mbox{\Hypertarget{barry_8hpp_a2ba8357ca62703620968e0b6db92233f}\label{barry_8hpp_a2ba8357ca62703620968e0b6db92233f}} \index{barry.hpp@{barry.hpp}!BARRY\_VERSION@{BARRY\_VERSION}} @@ -105,7 +105,7 @@ -Definition at line 29 of file barry.\+hpp. +Definition at line 33 of file barry.\+hpp. \mbox{\Hypertarget{barry_8hpp_a15d04cfd243831732f1885b32d9e4fa9}\label{barry_8hpp_a15d04cfd243831732f1885b32d9e4fa9}} \index{barry.hpp@{barry.hpp}!BARRY\_VERSION\_MAYOR@{BARRY\_VERSION\_MAYOR}} @@ -115,7 +115,7 @@ -Definition at line 27 of file barry.\+hpp. +Definition at line 31 of file barry.\+hpp. \mbox{\Hypertarget{barry_8hpp_ac7a7d08916bc1712f6381b5200f17fda}\label{barry_8hpp_ac7a7d08916bc1712f6381b5200f17fda}} \index{barry.hpp@{barry.hpp}!BARRY\_VERSION\_MINOR@{BARRY\_VERSION\_MINOR}} @@ -125,71 +125,71 @@ -Definition at line 28 of file barry.\+hpp. +Definition at line 32 of file barry.\+hpp. \mbox{\Hypertarget{barry_8hpp_ae7fbc217bad33cff559b1fc41375a8ff}\label{barry_8hpp_ae7fbc217bad33cff559b1fc41375a8ff}} \index{barry.hpp@{barry.hpp}!COUNTER\_FUNCTION@{COUNTER\_FUNCTION}} \index{COUNTER\_FUNCTION@{COUNTER\_FUNCTION}!barry.hpp@{barry.hpp}} \doxysubsubsection{\texorpdfstring{COUNTER\_FUNCTION}{COUNTER\_FUNCTION}} -{\footnotesize\ttfamily \#define COUNTER\+\_\+\+FUNCTION(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define COUNTER\+\_\+\+FUNCTION(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} \DoxyCodeLine{ \textcolor{keyword}{template} <\textcolor{keyword}{typename} Array\_Type = barry::BArray<>, \textcolor{keyword}{typename} Data\_Type = \textcolor{keywordtype}{bool}> \(\backslash\)} -\DoxyCodeLine{ inline double (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) (\textcolor{keyword}{const} Array\_Type \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Data\_Type \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})\(\backslash\)} +\DoxyCodeLine{ inline double (a) (\textcolor{keyword}{const} Array\_Type \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Data\_Type \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})\(\backslash\)} \end{DoxyCode} -Definition at line 88 of file barry.\+hpp. +Definition at line 92 of file barry.\+hpp. \mbox{\Hypertarget{barry_8hpp_a0dd594d2194ac0aa72b14cc42077331b}\label{barry_8hpp_a0dd594d2194ac0aa72b14cc42077331b}} \index{barry.hpp@{barry.hpp}!COUNTER\_LAMBDA@{COUNTER\_LAMBDA}} \index{COUNTER\_LAMBDA@{COUNTER\_LAMBDA}!barry.hpp@{barry.hpp}} \doxysubsubsection{\texorpdfstring{COUNTER\_LAMBDA}{COUNTER\_LAMBDA}} -{\footnotesize\ttfamily \#define COUNTER\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define COUNTER\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} \DoxyCodeLine{ \textcolor{keyword}{template} <\textcolor{keyword}{typename} Array\_Type = barry::BArray<>, \textcolor{keyword}{typename} Data\_Type = \textcolor{keywordtype}{bool}> \(\backslash\)} -\DoxyCodeLine{ Counter\_fun\_type \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = \(\backslash\)} -\DoxyCodeLine{ [](\textcolor{keyword}{const} Array\_Type \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Data\_Type \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +\DoxyCodeLine{ Counter\_fun\_type a = \(\backslash\)} +\DoxyCodeLine{ [](\textcolor{keyword}{const} Array\_Type \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Data\_Type \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} \end{DoxyCode} -Definition at line 91 of file barry.\+hpp. +Definition at line 95 of file barry.\+hpp. \mbox{\Hypertarget{barry_8hpp_aca4359c3356b25fb710d4dbc93d8d5a8}\label{barry_8hpp_aca4359c3356b25fb710d4dbc93d8d5a8}} \index{barry.hpp@{barry.hpp}!RULE\_FUNCTION@{RULE\_FUNCTION}} \index{RULE\_FUNCTION@{RULE\_FUNCTION}!barry.hpp@{barry.hpp}} \doxysubsubsection{\texorpdfstring{RULE\_FUNCTION}{RULE\_FUNCTION}} -{\footnotesize\ttfamily \#define RULE\+\_\+\+FUNCTION(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define RULE\+\_\+\+FUNCTION(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} \DoxyCodeLine{ \textcolor{keyword}{template} <\textcolor{keyword}{typename} Array\_Type = barry::BArray<>, \textcolor{keyword}{typename} Data\_Type = \textcolor{keywordtype}{bool}> \(\backslash\)} -\DoxyCodeLine{ inline bool (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) (\textcolor{keyword}{const} Array\_Type \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Data\_Type \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})\(\backslash\)} +\DoxyCodeLine{ inline bool (a) (\textcolor{keyword}{const} Array\_Type \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Data\_Type \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})\(\backslash\)} \end{DoxyCode} -Definition at line 95 of file barry.\+hpp. +Definition at line 99 of file barry.\+hpp. \mbox{\Hypertarget{barry_8hpp_a65e3788fca9f405ff460ff7cfbad63f3}\label{barry_8hpp_a65e3788fca9f405ff460ff7cfbad63f3}} \index{barry.hpp@{barry.hpp}!RULE\_LAMBDA@{RULE\_LAMBDA}} \index{RULE\_LAMBDA@{RULE\_LAMBDA}!barry.hpp@{barry.hpp}} \doxysubsubsection{\texorpdfstring{RULE\_LAMBDA}{RULE\_LAMBDA}} -{\footnotesize\ttfamily \#define RULE\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define RULE\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} \DoxyCodeLine{ \textcolor{keyword}{template} <\textcolor{keyword}{typename} Array\_Type = barry::BArray<>, \textcolor{keyword}{typename} Data\_Type = \textcolor{keywordtype}{bool}> \(\backslash\)} -\DoxyCodeLine{ Rule\_fun\_type \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = \(\backslash\)} -\DoxyCodeLine{ [](\textcolor{keyword}{const} Array\_Type \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Data\_Type \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +\DoxyCodeLine{ Rule\_fun\_type a = \(\backslash\)} +\DoxyCodeLine{ [](\textcolor{keyword}{const} Array\_Type \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Data\_Type \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} \end{DoxyCode} -Definition at line 98 of file barry.\+hpp. +Definition at line 102 of file barry.\+hpp. diff --git a/latex/barry_8hpp__incl.pdf b/latex/barry_8hpp__incl.pdf index f8c0399a0..83fe52d7a 100644 Binary files a/latex/barry_8hpp__incl.pdf and b/latex/barry_8hpp__incl.pdf differ diff --git a/latex/cell-bones_8hpp__dep__incl.pdf b/latex/cell-bones_8hpp__dep__incl.pdf index 935cf865b..a409d53c9 100644 Binary files a/latex/cell-bones_8hpp__dep__incl.pdf and b/latex/cell-bones_8hpp__dep__incl.pdf differ diff --git a/latex/cell-meat_8hpp__dep__incl.pdf b/latex/cell-meat_8hpp__dep__incl.pdf index 7fe9e27dc..e75c39c9c 100644 Binary files a/latex/cell-meat_8hpp__dep__incl.pdf and b/latex/cell-meat_8hpp__dep__incl.pdf differ diff --git a/latex/class_b_array.tex b/latex/class_b_array.tex index c77b4e5c6..e3872644a 100644 --- a/latex/class_b_array.tex +++ b/latex/class_b_array.tex @@ -16,21 +16,21 @@ \item \mbox{\hyperlink{class_b_array_af39acdf29aa5999a7f5fd48141be384e}{$\sim$\+BArray}} () \item -void \mbox{\hyperlink{class_b_array_a1a8e7c67188c1aef4dcf7cfe68de1729}{out\+\_\+of\+\_\+range}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const +void \mbox{\hyperlink{class_b_array_a1a8e7c67188c1aef4dcf7cfe68de1729}{out\+\_\+of\+\_\+range}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const \item -Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_ac55be93096e0da131f5923ff9714e09f}{get\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const +Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_ac55be93096e0da131f5923ff9714e09f}{get\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const \item -std\+::vector$<$ Cell\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_ad158a819cd8c3a120ed7de0d9624fb27}{get\+\_\+col\+\_\+vec}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +std\+::vector$<$ Cell\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_ad158a819cd8c3a120ed7de0d9624fb27}{get\+\_\+col\+\_\+vec}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item -std\+::vector$<$ Cell\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_ae0c7453bfb5738f14a314f53efcb769b}{get\+\_\+row\+\_\+vec}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +std\+::vector$<$ Cell\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_ae0c7453bfb5738f14a314f53efcb769b}{get\+\_\+row\+\_\+vec}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item -void \mbox{\hyperlink{class_b_array_adf482f08084b68646c894fdc5a044c58}{get\+\_\+col\+\_\+vec}} (std\+::vector$<$ Cell\+\_\+\+Type $>$ $\ast$x, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +void \mbox{\hyperlink{class_b_array_adf482f08084b68646c894fdc5a044c58}{get\+\_\+col\+\_\+vec}} (std\+::vector$<$ Cell\+\_\+\+Type $>$ $\ast$x, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item -void \mbox{\hyperlink{class_b_array_afc1360d212c39e56356e17574ebc90ca}{get\+\_\+row\+\_\+vec}} (std\+::vector$<$ Cell\+\_\+\+Type $>$ $\ast$x, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +void \mbox{\hyperlink{class_b_array_afc1360d212c39e56356e17574ebc90ca}{get\+\_\+row\+\_\+vec}} (std\+::vector$<$ Cell\+\_\+\+Type $>$ $\ast$x, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item -const \mbox{\hyperlink{typedefs_8hpp_a84308a04a60581533b3c5e796c8248f5}{Row\+\_\+type}}$<$ Cell\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_b_array_acfa6021a4487d6e86892cb120a3483ca}{row}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +const \mbox{\hyperlink{typedefs_8hpp_a84308a04a60581533b3c5e796c8248f5}{Row\+\_\+type}}$<$ Cell\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_b_array_acfa6021a4487d6e86892cb120a3483ca}{row}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item -const \mbox{\hyperlink{typedefs_8hpp_adfb2ee3c0edfa46d47dc24cbbfabb11b}{Col\+\_\+type}}$<$ Cell\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_b_array_a74592a78445bd8119ecc65b2935c654f}{col}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +const \mbox{\hyperlink{typedefs_8hpp_adfb2ee3c0edfa46d47dc24cbbfabb11b}{Col\+\_\+type}}$<$ Cell\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_b_array_a74592a78445bd8119ecc65b2935c654f}{col}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item \mbox{\hyperlink{class_entries}{Entries}}$<$ Cell\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_aca2a1b7b9fb02703ded3006fcb2d3c37}{get\+\_\+entries}} () const \begin{DoxyCompactList}\small\item\em Get the edgelist. \end{DoxyCompactList}\item @@ -84,7 +84,7 @@ \textbf{ }\par \begin{DoxyCompactItemize} \item -void \mbox{\hyperlink{class_b_array_accf44b49caa7746a462a3ac9b6024cfc}{set\+\_\+data}} (Data\+\_\+\+Type $\ast$\mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}}, bool delete\+\_\+data\+\_\+=false) +void \mbox{\hyperlink{class_b_array_accf44b49caa7746a462a3ac9b6024cfc}{set\+\_\+data}} (Data\+\_\+\+Type $\ast$\mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}}, bool delete\+\_\+data\+\_\+=false) \begin{DoxyCompactList}\small\item\em Set the data object. \end{DoxyCompactList}\item Data\+\_\+\+Type $\ast$ \mbox{\hyperlink{class_b_array_a278123bc0685719bf72d550e9c7a87e9}{D\+\_\+ptr}} () \item @@ -107,7 +107,7 @@ \end{DoxyParams} }\begin{DoxyCompactItemize} \item -bool \mbox{\hyperlink{class_b_array_ac79fd6238587c0eb26552fee92cc824c}{is\+\_\+empty}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const +bool \mbox{\hyperlink{class_b_array_ac79fd6238587c0eb26552fee92cc824c}{is\+\_\+empty}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const \item size\+\_\+t \mbox{\hyperlink{class_b_array_ad8a523ba6c56ff7dcfdb3f347b14dba7}{nrow}} () const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} \item @@ -134,23 +134,23 @@ \item \mbox{\hyperlink{class_b_array}{BArray}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_b_array_a086ed73d8a7b0938cb90856096da46f7}{operator-\/=}} (const std\+::pair$<$ size\+\_\+t, size\+\_\+t $>$ \&coords) \item -\mbox{\hyperlink{class_b_array_cell}{BArray\+Cell}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_a7ad07b8941feb2ca9ba44fff52455149}{operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) +\mbox{\hyperlink{class_b_array_cell}{BArray\+Cell}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_a7ad07b8941feb2ca9ba44fff52455149}{operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) \item -const Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_afc34191da1dc86be6aa2917993274424}{operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const +const Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_afc34191da1dc86be6aa2917993274424}{operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const \item -void \mbox{\hyperlink{class_b_array_a886e0bbee44ea23852e6baf1dd84f0ab}{rm\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true, bool check\+\_\+exists=true) +void \mbox{\hyperlink{class_b_array_a886e0bbee44ea23852e6baf1dd84f0ab}{rm\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true, bool check\+\_\+exists=true) \item -void \mbox{\hyperlink{class_b_array_a94727f97062ec1769f92b1d0f2ad90c8}{insert\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, const \mbox{\hyperlink{class_cell}{Cell}}$<$ Cell\+\_\+\+Type $>$ \&v, bool check\+\_\+bounds, bool check\+\_\+exists) +void \mbox{\hyperlink{class_b_array_a94727f97062ec1769f92b1d0f2ad90c8}{insert\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, const \mbox{\hyperlink{class_cell}{Cell}}$<$ Cell\+\_\+\+Type $>$ \&v, bool check\+\_\+bounds, bool check\+\_\+exists) \item -void \mbox{\hyperlink{class_b_array_a3d5b3407707be8a887463f4293f83a45}{insert\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_cell}{Cell}}$<$ Cell\+\_\+\+Type $>$ \&\&v, bool check\+\_\+bounds, bool check\+\_\+exists) +void \mbox{\hyperlink{class_b_array_a3d5b3407707be8a887463f4293f83a45}{insert\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_cell}{Cell}}$<$ Cell\+\_\+\+Type $>$ \&\&v, bool check\+\_\+bounds, bool check\+\_\+exists) \item -void \mbox{\hyperlink{class_b_array_ae4d3a01b66443d4f9f5f1b83f28826de}{insert\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Cell\+\_\+\+Type v, bool check\+\_\+bounds, bool check\+\_\+exists) +void \mbox{\hyperlink{class_b_array_ae4d3a01b66443d4f9f5f1b83f28826de}{insert\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Cell\+\_\+\+Type v, bool check\+\_\+bounds, bool check\+\_\+exists) \item void \mbox{\hyperlink{class_b_array_ac989d422174ce277a80f1c63aba004c5}{swap\+\_\+cells}} (size\+\_\+t i0, size\+\_\+t j0, size\+\_\+t i1, size\+\_\+t j1, bool check\+\_\+bounds=true, int check\+\_\+exists=\mbox{\hyperlink{namespace_c_h_e_c_k_a3acda1c74bfabb5b6b67e19d0ad2d52a}{CHECK\+::\+BOTH}}, int $\ast$report=nullptr) \item -void \mbox{\hyperlink{class_b_array_a8e5b848c1b49e22f82b7f355d61851aa}{toggle\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true, int check\+\_\+exists=\mbox{\hyperlink{namespace_e_x_i_s_t_s_a81eb362d951445c658942a433afddb97}{EXISTS\+::\+UKNOWN}}) +void \mbox{\hyperlink{class_b_array_a8e5b848c1b49e22f82b7f355d61851aa}{toggle\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true, int check\+\_\+exists=\mbox{\hyperlink{namespace_e_x_i_s_t_s_a81eb362d951445c658942a433afddb97}{EXISTS\+::\+UKNOWN}}) \item -void \mbox{\hyperlink{class_b_array_a6e97ad113573875b6bdbd75dca31a514}{toggle\+\_\+lock}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) +void \mbox{\hyperlink{class_b_array_a6e97ad113573875b6bdbd75dca31a514}{toggle\+\_\+lock}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) \end{DoxyCompactItemize} \end{Indent} \begin{Indent}\textbf{ Column/row wise interchange}\par @@ -160,7 +160,7 @@ \item void \mbox{\hyperlink{class_b_array_a1e868a51ece8eba5f53c8da06bf57c80}{swap\+\_\+cols}} (size\+\_\+t j0, size\+\_\+t j1, bool check\+\_\+bounds=true) \item -void \mbox{\hyperlink{class_b_array_a515c069e123eabc9b5b78ffe106d86bb}{zero\+\_\+row}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) +void \mbox{\hyperlink{class_b_array_a515c069e123eabc9b5b78ffe106d86bb}{zero\+\_\+row}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) \item void \mbox{\hyperlink{class_b_array_a256b66d499284284486283de666d1022}{zero\+\_\+col}} (size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) \end{DoxyCompactItemize} diff --git a/latex/class_b_array_dense.tex b/latex/class_b_array_dense.tex index 01e2e45d6..792089303 100644 --- a/latex/class_b_array_dense.tex +++ b/latex/class_b_array_dense.tex @@ -16,21 +16,21 @@ \item \mbox{\hyperlink{class_b_array_dense_a6c11b9468b30cfe6f77cecc06bfe31c7}{$\sim$\+BArray\+Dense}} () \item -void \mbox{\hyperlink{class_b_array_dense_a97f4f6698316308f36a8ab0ca06a624a}{out\+\_\+of\+\_\+range}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const +void \mbox{\hyperlink{class_b_array_dense_a97f4f6698316308f36a8ab0ca06a624a}{out\+\_\+of\+\_\+range}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const \item -Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_dense_afe9f21012d8f54b242a48e57a7a34e10}{get\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const +Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_dense_afe9f21012d8f54b242a48e57a7a34e10}{get\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const \item -std\+::vector$<$ Cell\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_dense_a0635bce5053a1c45ff6cec9e2994e32d}{get\+\_\+col\+\_\+vec}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +std\+::vector$<$ Cell\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_dense_a0635bce5053a1c45ff6cec9e2994e32d}{get\+\_\+col\+\_\+vec}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item -std\+::vector$<$ Cell\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_dense_a91d6658c5563f03962f65bfa32b8e60f}{get\+\_\+row\+\_\+vec}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +std\+::vector$<$ Cell\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_dense_a91d6658c5563f03962f65bfa32b8e60f}{get\+\_\+row\+\_\+vec}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item -void \mbox{\hyperlink{class_b_array_dense_aaadff2bbe53266fb3d481bbb3ab71e63}{get\+\_\+col\+\_\+vec}} (std\+::vector$<$ Cell\+\_\+\+Type $>$ $\ast$x, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +void \mbox{\hyperlink{class_b_array_dense_aaadff2bbe53266fb3d481bbb3ab71e63}{get\+\_\+col\+\_\+vec}} (std\+::vector$<$ Cell\+\_\+\+Type $>$ $\ast$x, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item -void \mbox{\hyperlink{class_b_array_dense_af65817ab481014f1bf13d03993f2e074}{get\+\_\+row\+\_\+vec}} (std\+::vector$<$ Cell\+\_\+\+Type $>$ $\ast$x, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +void \mbox{\hyperlink{class_b_array_dense_af65817ab481014f1bf13d03993f2e074}{get\+\_\+row\+\_\+vec}} (std\+::vector$<$ Cell\+\_\+\+Type $>$ $\ast$x, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item -\mbox{\hyperlink{class_b_array_dense_row}{BArray\+Dense\+Row}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_b_array_dense_ad42ce9542e5a9fc7d6c2f219d64aca66}{row}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) +\mbox{\hyperlink{class_b_array_dense_row}{BArray\+Dense\+Row}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_b_array_dense_ad42ce9542e5a9fc7d6c2f219d64aca66}{row}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) \item -const \mbox{\hyperlink{class_b_array_dense_row__const}{BArray\+Dense\+Row\+\_\+const}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_dense_a91855b374277bd4d2888333e49718bc2}{row}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) const +const \mbox{\hyperlink{class_b_array_dense_row__const}{BArray\+Dense\+Row\+\_\+const}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_dense_a91855b374277bd4d2888333e49718bc2}{row}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) const \item \mbox{\hyperlink{class_b_array_dense_col}{BArray\+Dense\+Col}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_b_array_dense_a5b241b60d7c99fd4619cd4e2403ee884}{col}} (size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) \item @@ -52,9 +52,9 @@ \item const std\+::vector$<$ Cell\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_b_array_dense_a4aa05abf3486a40b912d4708fcf6c611}{get\+\_\+data}} () const \item -const Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_dense_a3985df34bf01505f7d217209d40de214}{rowsum}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +const Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_dense_a3985df34bf01505f7d217209d40de214}{rowsum}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item -const Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_dense_ae2207066de4ec5e28e341321aae26960}{colsum}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +const Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_dense_ae2207066de4ec5e28e341321aae26960}{colsum}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \end{DoxyCompactItemize} \begin{Indent}\textbf{ Constructors}\par {\em @@ -94,7 +94,7 @@ \textbf{ }\par \begin{DoxyCompactItemize} \item -void \mbox{\hyperlink{class_b_array_dense_a773a7953f931a84847c2e63aa0f7d53f}{set\+\_\+data}} (Data\+\_\+\+Type $\ast$\mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}}, bool delete\+\_\+data\+\_\+=false) +void \mbox{\hyperlink{class_b_array_dense_a773a7953f931a84847c2e63aa0f7d53f}{set\+\_\+data}} (Data\+\_\+\+Type $\ast$\mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}}, bool delete\+\_\+data\+\_\+=false) \begin{DoxyCompactList}\small\item\em Set the data object. \end{DoxyCompactList}\item Data\+\_\+\+Type $\ast$ \mbox{\hyperlink{class_b_array_dense_aaa7ab789f8ec1ae2d38681cb5505d32f}{D\+\_\+ptr}} () \item @@ -115,7 +115,7 @@ \end{DoxyParams} }\begin{DoxyCompactItemize} \item -bool \mbox{\hyperlink{class_b_array_dense_a1b089bc078390d2cac2aeb311e3d9cfa}{is\+\_\+empty}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const +bool \mbox{\hyperlink{class_b_array_dense_a1b089bc078390d2cac2aeb311e3d9cfa}{is\+\_\+empty}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const \item size\+\_\+t \mbox{\hyperlink{class_b_array_dense_a525c028e44f7619b3edb540c85c0eaf5}{nrow}} () const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} \item @@ -142,21 +142,21 @@ \item \mbox{\hyperlink{class_b_array_dense}{BArray\+Dense}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_b_array_dense_aff6aef77f6b1d7f273e6962131d03424}{operator-\/=}} (const std\+::pair$<$ size\+\_\+t, size\+\_\+t $>$ \&coords) \item -\mbox{\hyperlink{class_b_array_dense_cell}{BArray\+Dense\+Cell}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_dense_aceaa98609154a7610f5ef22150f0204d}{operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) +\mbox{\hyperlink{class_b_array_dense_cell}{BArray\+Dense\+Cell}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{class_b_array_dense_aceaa98609154a7610f5ef22150f0204d}{operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) \item -const Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_dense_a85ab2af2ed687b83b16cb3764c9578bf}{operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const +const Cell\+\_\+\+Type \mbox{\hyperlink{class_b_array_dense_a85ab2af2ed687b83b16cb3764c9578bf}{operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) const \item -void \mbox{\hyperlink{class_b_array_dense_a6d6c2456bc2e4fb20bbcd4d4a8f16700}{rm\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true, bool check\+\_\+exists=true) +void \mbox{\hyperlink{class_b_array_dense_a6d6c2456bc2e4fb20bbcd4d4a8f16700}{rm\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true, bool check\+\_\+exists=true) \item -void \mbox{\hyperlink{class_b_array_dense_a5650c73724d28e5073a1f7afb3fb7f81}{insert\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, const \mbox{\hyperlink{class_cell}{Cell}}$<$ Cell\+\_\+\+Type $>$ \&v, bool check\+\_\+bounds, bool) +void \mbox{\hyperlink{class_b_array_dense_a5650c73724d28e5073a1f7afb3fb7f81}{insert\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, const \mbox{\hyperlink{class_cell}{Cell}}$<$ Cell\+\_\+\+Type $>$ \&v, bool check\+\_\+bounds, bool) \item -void \mbox{\hyperlink{class_b_array_dense_abcd5a45fa99a68aa547c0d1e70fd25e7}{insert\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Cell\+\_\+\+Type v, bool check\+\_\+bounds, bool) +void \mbox{\hyperlink{class_b_array_dense_abcd5a45fa99a68aa547c0d1e70fd25e7}{insert\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Cell\+\_\+\+Type v, bool check\+\_\+bounds, bool) \item void \mbox{\hyperlink{class_b_array_dense_a53f50519c80ef0816523814fdeda72c5}{swap\+\_\+cells}} (size\+\_\+t i0, size\+\_\+t j0, size\+\_\+t i1, size\+\_\+t j1, bool check\+\_\+bounds=true, int check\+\_\+exists=\mbox{\hyperlink{namespace_c_h_e_c_k_a3acda1c74bfabb5b6b67e19d0ad2d52a}{CHECK\+::\+BOTH}}, int $\ast$report=nullptr) \item -void \mbox{\hyperlink{class_b_array_dense_a9a4c476e28e4491793c38ad2f14715a8}{toggle\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true, int check\+\_\+exists=\mbox{\hyperlink{namespace_e_x_i_s_t_s_a81eb362d951445c658942a433afddb97}{EXISTS\+::\+UKNOWN}}) +void \mbox{\hyperlink{class_b_array_dense_a9a4c476e28e4491793c38ad2f14715a8}{toggle\+\_\+cell}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true, int check\+\_\+exists=\mbox{\hyperlink{namespace_e_x_i_s_t_s_a81eb362d951445c658942a433afddb97}{EXISTS\+::\+UKNOWN}}) \item -void \mbox{\hyperlink{class_b_array_dense_adffea380472c935d845af78f81751e35}{toggle\+\_\+lock}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) +void \mbox{\hyperlink{class_b_array_dense_adffea380472c935d845af78f81751e35}{toggle\+\_\+lock}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) \end{DoxyCompactItemize} \end{Indent} \begin{Indent}\textbf{ Column/row wise interchange}\par @@ -166,7 +166,7 @@ \item void \mbox{\hyperlink{class_b_array_dense_a203223d1bb73e5b1b5b536b2e39256a6}{swap\+\_\+cols}} (size\+\_\+t j0, size\+\_\+t j1, bool check\+\_\+bounds=true) \item -void \mbox{\hyperlink{class_b_array_dense_a0ce76bf9727c4ae16de50551461a5df5}{zero\+\_\+row}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) +void \mbox{\hyperlink{class_b_array_dense_a0ce76bf9727c4ae16de50551461a5df5}{zero\+\_\+row}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) \item void \mbox{\hyperlink{class_b_array_dense_a9d5d4dfaafbf89e58346c07247646b2a}{zero\+\_\+col}} (size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool check\+\_\+bounds=true) \end{DoxyCompactItemize} diff --git a/latex/class_b_array_dense_col.tex b/latex/class_b_array_dense_col.tex index 53cb78ff7..8c40acfb2 100644 --- a/latex/class_b_array_dense_col.tex +++ b/latex/class_b_array_dense_col.tex @@ -15,7 +15,7 @@ \item size\+\_\+t \mbox{\hyperlink{class_b_array_dense_col_ad98af3af82a9a36ea4f4b11e2d8bb84b}{size}} () const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} \item -std\+::pair$<$ size\+\_\+t, Cell\+\_\+\+Type $\ast$ $>$ \& \mbox{\hyperlink{class_b_array_dense_col_aa0aa3eb7d7a64ca1105f83c6c9ffb3b1}{operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) +std\+::pair$<$ size\+\_\+t, Cell\+\_\+\+Type $\ast$ $>$ \& \mbox{\hyperlink{class_b_array_dense_col_aa0aa3eb7d7a64ca1105f83c6c9ffb3b1}{operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) \end{DoxyCompactItemize} \doxysubsection*{Friends} \begin{DoxyCompactItemize} diff --git a/latex/class_b_array_dense_col__const.tex b/latex/class_b_array_dense_col__const.tex index 9f95d6208..b8ac38c1c 100644 --- a/latex/class_b_array_dense_col__const.tex +++ b/latex/class_b_array_dense_col__const.tex @@ -15,7 +15,7 @@ \item size\+\_\+t \mbox{\hyperlink{class_b_array_dense_col__const_aa94c1df05d3ece6449af71b9c6597487}{size}} () const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} \item -const std\+::pair$<$ size\+\_\+t, Cell\+\_\+\+Type $\ast$ $>$ \mbox{\hyperlink{class_b_array_dense_col__const_aacd29f40b7626f7ceeb8cf69735b51a9}{operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +const std\+::pair$<$ size\+\_\+t, Cell\+\_\+\+Type $\ast$ $>$ \mbox{\hyperlink{class_b_array_dense_col__const_aacd29f40b7626f7ceeb8cf69735b51a9}{operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \end{DoxyCompactItemize} \doxysubsection*{Friends} \begin{DoxyCompactItemize} diff --git a/latex/class_b_array_dense_row.tex b/latex/class_b_array_dense_row.tex index c73c87bdd..9803d3614 100644 --- a/latex/class_b_array_dense_row.tex +++ b/latex/class_b_array_dense_row.tex @@ -7,7 +7,7 @@ \doxysubsection*{Public Member Functions} \begin{DoxyCompactItemize} \item -\mbox{\hyperlink{class_b_array_dense_row_a0795cf5336f0004188aa80c25023f20d}{BArray\+Dense\+Row}} (\mbox{\hyperlink{class_b_array_dense}{BArray\+Dense}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \&array\+\_\+, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) +\mbox{\hyperlink{class_b_array_dense_row_a0795cf5336f0004188aa80c25023f20d}{BArray\+Dense\+Row}} (\mbox{\hyperlink{class_b_array_dense}{BArray\+Dense}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \&array\+\_\+, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) \item \mbox{\hyperlink{typedefs_8hpp_a84308a04a60581533b3c5e796c8248f5}{Row\+\_\+type}}$<$ Cell\+\_\+\+Type $>$\+::iterator \& \mbox{\hyperlink{class_b_array_dense_row_a2db74b65d369cee125ffde825380ec06}{begin}} () \item @@ -15,7 +15,7 @@ \item size\+\_\+t \mbox{\hyperlink{class_b_array_dense_row_a4364d2247afb6bce7effc52c8dcbe394}{size}} () const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} \item -std\+::pair$<$ size\+\_\+t, \mbox{\hyperlink{class_cell}{Cell}}$<$ Cell\+\_\+\+Type $>$ $>$ \& \mbox{\hyperlink{class_b_array_dense_row_a809468f99195bb87138212210f06fe9c}{operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) +std\+::pair$<$ size\+\_\+t, \mbox{\hyperlink{class_cell}{Cell}}$<$ Cell\+\_\+\+Type $>$ $>$ \& \mbox{\hyperlink{class_b_array_dense_row_a809468f99195bb87138212210f06fe9c}{operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) \end{DoxyCompactItemize} \doxysubsection*{Friends} \begin{DoxyCompactItemize} diff --git a/latex/class_b_array_dense_row__const.tex b/latex/class_b_array_dense_row__const.tex index 23ede219a..2474c5889 100644 --- a/latex/class_b_array_dense_row__const.tex +++ b/latex/class_b_array_dense_row__const.tex @@ -7,7 +7,7 @@ \doxysubsection*{Public Member Functions} \begin{DoxyCompactItemize} \item -\mbox{\hyperlink{class_b_array_dense_row__const_a3aebf699294eb8f64ce4a5baa60efad9}{BArray\+Dense\+Row\+\_\+const}} (const \mbox{\hyperlink{class_b_array_dense}{BArray\+Dense}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \&array\+\_\+, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) +\mbox{\hyperlink{class_b_array_dense_row__const_a3aebf699294eb8f64ce4a5baa60efad9}{BArray\+Dense\+Row\+\_\+const}} (const \mbox{\hyperlink{class_b_array_dense}{BArray\+Dense}}$<$ Cell\+\_\+\+Type, Data\+\_\+\+Type $>$ \&array\+\_\+, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) \item \mbox{\hyperlink{typedefs_8hpp_a84308a04a60581533b3c5e796c8248f5}{Row\+\_\+type}}$<$ Cell\+\_\+\+Type $>$\+::const\+\_\+iterator \mbox{\hyperlink{class_b_array_dense_row__const_a963ac37c10b72d03b0d1ff13b67428c7}{begin}} () const \item @@ -15,7 +15,7 @@ \item size\+\_\+t \mbox{\hyperlink{class_b_array_dense_row__const_a7c27b35d85ba2dfb499ff63beb4ebe1f}{size}} () const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} \item -const std\+::pair$<$ size\+\_\+t, \mbox{\hyperlink{class_cell}{Cell}}$<$ Cell\+\_\+\+Type $>$ $>$ \mbox{\hyperlink{class_b_array_dense_row__const_a2c9fc28d4c2f73a6a7855507e2d16fd5}{operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +const std\+::pair$<$ size\+\_\+t, \mbox{\hyperlink{class_cell}{Cell}}$<$ Cell\+\_\+\+Type $>$ $>$ \mbox{\hyperlink{class_b_array_dense_row__const_a2c9fc28d4c2f73a6a7855507e2d16fd5}{operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \end{DoxyCompactItemize} \doxysubsection*{Friends} \begin{DoxyCompactItemize} diff --git a/latex/class_const_b_array_row_iter__coll__graph.pdf b/latex/class_const_b_array_row_iter__coll__graph.pdf index e0c454ffe..0e8cbe2d8 100644 Binary files a/latex/class_const_b_array_row_iter__coll__graph.pdf and b/latex/class_const_b_array_row_iter__coll__graph.pdf differ diff --git a/latex/class_counter.tex b/latex/class_counter.tex index b0f85fe06..0c4c8c33a 100644 --- a/latex/class_counter.tex +++ b/latex/class_counter.tex @@ -14,9 +14,9 @@ \item \mbox{\hyperlink{class_counter_a66594b4ffbbf337241b032c1f039b3c0}{$\sim$\+Counter}} () \item -double \mbox{\hyperlink{class_counter_a91cc15ad977c8033d75d49302ae8ae15}{count}} (Array\+\_\+\+Type \&Array, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) +double \mbox{\hyperlink{class_counter_a91cc15ad977c8033d75d49302ae8ae15}{count}} (Array\+\_\+\+Type \&Array, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \item -double \mbox{\hyperlink{class_counter_a35a43cc56852ea44bc8c2b974d7e148b}{init}} (Array\+\_\+\+Type \&Array, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) +double \mbox{\hyperlink{class_counter_a35a43cc56852ea44bc8c2b974d7e148b}{init}} (Array\+\_\+\+Type \&Array, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \item std\+::string \mbox{\hyperlink{class_counter_aa0c5d14f8acd5c2f562225a6b03bf4fc}{get\+\_\+name}} () const \item @@ -38,7 +38,7 @@ \item \mbox{\hyperlink{class_counter_a56c2f4ad875497dea97934cd3ddebc81}{Counter}} () \item -\mbox{\hyperlink{class_counter_ad41ae754c90343630b4742b430f1375c}{Counter}} (\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{model-meat_8hpp_a2648076475c82f8bfed17e9c46b36f68}{count\+\_\+fun\+\_\+}}, \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{model-meat_8hpp_aa9ebe808e2d37ce1008f4e98fe5c5c6b}{init\+\_\+fun\+\_\+}}, \mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a7c4ea5d2468020b3872c9c6a4c3b0442}{hasher\+\_\+fun\+\_\+}}, Data\+\_\+\+Type \mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\+\_\+}}=\char`\"{}\char`\"{}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_a85048b7e05646aea9e927425a9dc2656}{desc\+\_\+}}=\char`\"{}\char`\"{}) +\mbox{\hyperlink{class_counter_ad41ae754c90343630b4742b430f1375c}{Counter}} (\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a4c3b0c42e7e960fe3d847ee31a0adc7c}{count\+\_\+fun\+\_\+}}, \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a75f789c12bebd743c636550d811dc23e}{init\+\_\+fun\+\_\+}}, \mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a7c4ea5d2468020b3872c9c6a4c3b0442}{hasher\+\_\+fun\+\_\+}}, Data\+\_\+\+Type \mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\+\_\+}}=\char`\"{}\char`\"{}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_a85048b7e05646aea9e927425a9dc2656}{desc\+\_\+}}=\char`\"{}\char`\"{}) \item \mbox{\hyperlink{class_counter_a89aa39dd007b8aa1bcde97519d516806}{Counter}} (const \mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \&\mbox{\hyperlink{counters-meat_8hpp_a3119b2fa04b5a2a25b36f78264fdf274}{counter\+\_\+}}) \begin{DoxyCompactList}\small\item\em Copy constructor. \end{DoxyCompactList}\item diff --git a/latex/class_counters.tex b/latex/class_counters.tex index d534a0078..f4ce473f9 100644 --- a/latex/class_counters.tex +++ b/latex/class_counters.tex @@ -30,7 +30,7 @@ \begin{DoxyCompactList}\small\item\em Number of counters in the set. \end{DoxyCompactList}\item void \mbox{\hyperlink{class_counters_ade13818258000807011f9597ebf57012}{add\+\_\+counter}} (\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{statscounter-meat_8hpp_adee42f2c06e4e0d3087f70059908f7d1}{counter}}) \item -void \mbox{\hyperlink{class_counters_a03e76f5d7228208bd533a0ce76eaf35e}{add\+\_\+counter}} (\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{model-meat_8hpp_a2648076475c82f8bfed17e9c46b36f68}{count\+\_\+fun\+\_\+}}, \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{model-meat_8hpp_aa9ebe808e2d37ce1008f4e98fe5c5c6b}{init\+\_\+fun\+\_\+}}, \mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a7c4ea5d2468020b3872c9c6a4c3b0442}{hasher\+\_\+fun\+\_\+}}, Data\+\_\+\+Type \mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\+\_\+}}=\char`\"{}\char`\"{}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_a85048b7e05646aea9e927425a9dc2656}{desc\+\_\+}}=\char`\"{}\char`\"{}) +void \mbox{\hyperlink{class_counters_a03e76f5d7228208bd533a0ce76eaf35e}{add\+\_\+counter}} (\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a4c3b0c42e7e960fe3d847ee31a0adc7c}{count\+\_\+fun\+\_\+}}, \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a75f789c12bebd743c636550d811dc23e}{init\+\_\+fun\+\_\+}}, \mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a7c4ea5d2468020b3872c9c6a4c3b0442}{hasher\+\_\+fun\+\_\+}}, Data\+\_\+\+Type \mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\+\_\+}}=\char`\"{}\char`\"{}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_a85048b7e05646aea9e927425a9dc2656}{desc\+\_\+}}=\char`\"{}\char`\"{}) \item std\+::vector$<$ std\+::string $>$ \mbox{\hyperlink{class_counters_ab59400b23d6e8ed0d9f204ec468d255f}{get\+\_\+names}} () const \item @@ -38,7 +38,7 @@ \item std\+::vector$<$ double $>$ \mbox{\hyperlink{class_counters_afd1b177a298af425c1ae7aa0049107de}{gen\+\_\+hash}} (const Array\+\_\+\+Type \&array, bool \mbox{\hyperlink{counters-meat_8hpp_abf51d2d1d1db95f68ed44c896a4eec1c}{add\+\_\+dims}}=true) \begin{DoxyCompactList}\small\item\em Generates a hash for the given array according to the counters. \end{DoxyCompactList}\item -void \mbox{\hyperlink{class_counters_a47eefd62521bf67feac1e7e03a1c0231}{add\+\_\+hash}} (\mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{model-meat_8hpp_ab8ef6c3e79d05d9438b72a41339d7842}{fun\+\_\+}}) +void \mbox{\hyperlink{class_counters_a47eefd62521bf67feac1e7e03a1c0231}{add\+\_\+hash}} (\mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a7b9c38a045f3121f0a943d5b980ec17f}{fun\+\_\+}}) \end{DoxyCompactItemize} diff --git a/latex/class_d_e_f_m.tex b/latex/class_d_e_f_m.tex index acf6c07d6..9b095fa28 100644 --- a/latex/class_d_e_f_m.tex +++ b/latex/class_d_e_f_m.tex @@ -53,7 +53,7 @@ \item barry\+::\+Freq\+Table$<$ int $>$ \mbox{\hyperlink{class_d_e_f_m_afff59ccea4acd2d2bfdb1ad9f3dd89cd}{motif\+\_\+census}} (std\+::vector$<$ size\+\_\+t $>$ idx) \item -std\+::vector$<$ double $>$ \mbox{\hyperlink{class_d_e_f_m_abf519be0cc1245fbaf71842ca5a53519}{logodds}} (const std\+::vector$<$ double $>$ \&par, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) +std\+::vector$<$ double $>$ \mbox{\hyperlink{class_d_e_f_m_abf519be0cc1245fbaf71842ca5a53519}{logodds}} (const std\+::vector$<$ double $>$ \&par, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \item void \mbox{\hyperlink{class_d_e_f_m_a5a7e2cb7c500f1379763c35d48f03ffb}{set\+\_\+names}} (std\+::vector$<$ std\+::string $>$ Y\+\_\+names\+\_\+, std\+::vector$<$ std\+::string $>$ X\+\_\+names\+\_\+) \item diff --git a/latex/class_d_e_f_m__coll__graph.pdf b/latex/class_d_e_f_m__coll__graph.pdf index 2ddfc7ce0..2cc07aaeb 100644 Binary files a/latex/class_d_e_f_m__coll__graph.pdf and b/latex/class_d_e_f_m__coll__graph.pdf differ diff --git a/latex/class_d_e_f_m__inherit__graph.pdf b/latex/class_d_e_f_m__inherit__graph.pdf index 2ddfc7ce0..2cc07aaeb 100644 Binary files a/latex/class_d_e_f_m__inherit__graph.pdf and b/latex/class_d_e_f_m__inherit__graph.pdf differ diff --git a/latex/class_d_e_f_m_counter_data.tex b/latex/class_d_e_f_m_counter_data.tex index 7fedf1948..0a8f58faa 100644 --- a/latex/class_d_e_f_m_counter_data.tex +++ b/latex/class_d_e_f_m_counter_data.tex @@ -16,11 +16,11 @@ \item \mbox{\hyperlink{group__rules-phylo_gadd378b812c5aed4989605ee216c0cdb2}{DEFMCounter\+Data}} (const std\+::vector$<$ size\+\_\+t $>$ indices\+\_\+, const std\+::vector$<$ double $>$ numbers\+\_\+, const std\+::vector$<$ bool $>$ logical\+\_\+, bool is\+\_\+motif\+\_\+=true) \item -size\+\_\+t \mbox{\hyperlink{group__rules-phylo_ga7f779ce019f2eaa30af381500384d393}{idx}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +size\+\_\+t \mbox{\hyperlink{group__rules-phylo_ga7f779ce019f2eaa30af381500384d393}{idx}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item -double \mbox{\hyperlink{group__rules-phylo_ga2145b3b46a20bf7ea646f0a76e4b74b8}{num}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +double \mbox{\hyperlink{group__rules-phylo_ga2145b3b46a20bf7ea646f0a76e4b74b8}{num}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item -bool \mbox{\hyperlink{group__rules-phylo_ga6366be3b3f9e1d0bfd1455f0eee20429}{is\+\_\+true}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +bool \mbox{\hyperlink{group__rules-phylo_ga6366be3b3f9e1d0bfd1455f0eee20429}{is\+\_\+true}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item \mbox{\hyperlink{group__rules-phylo_ga0b09b4a0c405b1e2f694d39136bf87f6}{$\sim$\+DEFMCounter\+Data}} () \end{DoxyCompactItemize} diff --git a/latex/class_d_e_f_m_data.tex b/latex/class_d_e_f_m_data.tex index 59b83e9b9..44ac91dd8 100644 --- a/latex/class_d_e_f_m_data.tex +++ b/latex/class_d_e_f_m_data.tex @@ -16,9 +16,9 @@ \begin{DoxyCompactList}\small\item\em Vector indicating which covariates are included in the model. \end{DoxyCompactList}\item \mbox{\hyperlink{group__rules-phylo_ga565c76b50a702e1cf86206d625fe512b}{DEFMData}} (\mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} $\ast$array\+\_\+, const double $\ast$covariates\+\_\+, size\+\_\+t obs\+\_\+start\+\_\+, size\+\_\+t X\+\_\+ncol\+\_\+, size\+\_\+t X\+\_\+nrow\+\_\+) \begin{DoxyCompactList}\small\item\em Constructor. \end{DoxyCompactList}\item -double \mbox{\hyperlink{group__rules-phylo_ga66b7a40df357b79514dcbc4accfe679d}{operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const +double \mbox{\hyperlink{group__rules-phylo_ga66b7a40df357b79514dcbc4accfe679d}{operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const \begin{DoxyCompactList}\small\item\em Access to the row (i) colum (j) data. \end{DoxyCompactList}\item -double \mbox{\hyperlink{group__rules-phylo_gab2a20858a209c975a4a3ca341f33f9c2}{at}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const +double \mbox{\hyperlink{group__rules-phylo_gab2a20858a209c975a4a3ca341f33f9c2}{at}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const \item size\+\_\+t \mbox{\hyperlink{group__rules-phylo_ga8e70fc57678680180582741e5865fff2}{ncol}} () const \item diff --git a/latex/class_d_e_f_m_rule_data.tex b/latex/class_d_e_f_m_rule_data.tex index 5a8b1391c..d177a943a 100644 --- a/latex/class_d_e_f_m_rule_data.tex +++ b/latex/class_d_e_f_m_rule_data.tex @@ -17,11 +17,11 @@ \doxysubsection*{Public Member Functions} \begin{DoxyCompactItemize} \item -double \mbox{\hyperlink{group__rules-phylo_ga492f81abc80e4de779c95ec8956b5e38}{num}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +double \mbox{\hyperlink{group__rules-phylo_ga492f81abc80e4de779c95ec8956b5e38}{num}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item -size\+\_\+t \mbox{\hyperlink{group__rules-phylo_gad92a95c8a2097d1a4cb0cf766409791c}{idx}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +size\+\_\+t \mbox{\hyperlink{group__rules-phylo_gad92a95c8a2097d1a4cb0cf766409791c}{idx}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item -bool \mbox{\hyperlink{group__rules-phylo_ga6bdc61aa25a629863002c9fb98a2acee}{is\+\_\+true}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +bool \mbox{\hyperlink{group__rules-phylo_ga6bdc61aa25a629863002c9fb98a2acee}{is\+\_\+true}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item \mbox{\hyperlink{group__rules-phylo_gafb84c6ffe48f80056b15e0ae6bad4b3a}{DEFMRule\+Data}} () \item diff --git a/latex/class_d_e_f_m_rule_data__inherit__graph.pdf b/latex/class_d_e_f_m_rule_data__inherit__graph.pdf index 795afec0b..c4be23098 100644 Binary files a/latex/class_d_e_f_m_rule_data__inherit__graph.pdf and b/latex/class_d_e_f_m_rule_data__inherit__graph.pdf differ diff --git a/latex/class_d_e_f_m_rule_dyn_data__coll__graph.pdf b/latex/class_d_e_f_m_rule_dyn_data__coll__graph.pdf index d079839c2..cf1b36ff7 100644 Binary files a/latex/class_d_e_f_m_rule_dyn_data__coll__graph.pdf and b/latex/class_d_e_f_m_rule_dyn_data__coll__graph.pdf differ diff --git a/latex/class_d_e_f_m_rule_dyn_data__inherit__graph.pdf b/latex/class_d_e_f_m_rule_dyn_data__inherit__graph.pdf index d079839c2..cf1b36ff7 100644 Binary files a/latex/class_d_e_f_m_rule_dyn_data__inherit__graph.pdf and b/latex/class_d_e_f_m_rule_dyn_data__inherit__graph.pdf differ diff --git a/latex/class_flock.tex b/latex/class_flock.tex index d207457cf..7e8908f3c 100644 --- a/latex/class_flock.tex +++ b/latex/class_flock.tex @@ -32,9 +32,9 @@ \item \mbox{\hyperlink{geese-types_8hpp_a295e1042dd5ede0902719e8ba9756561}{Phylo\+Model}} $\ast$ \mbox{\hyperlink{class_flock_a9692be014117ae093ce160462dbde0d2}{get\+\_\+model}} () \item -double \mbox{\hyperlink{class_flock_a275193d11c7ce3b8ec5dc18c8fab3e2e}{likelihood\+\_\+joint}} (const std\+::vector$<$ double $>$ \&par, bool as\+\_\+log=false, bool use\+\_\+reduced\+\_\+sequence=true) +double \mbox{\hyperlink{class_flock_a7bcad6b3c794cefc1b4bb613d13ddf71}{likelihood\+\_\+joint}} (const std\+::vector$<$ double $>$ \&par, bool as\+\_\+log=false, bool use\+\_\+reduced\+\_\+sequence=true,) \begin{DoxyCompactList}\small\item\em Returns the joint likelihood of the model. \end{DoxyCompactList}\item -\mbox{\hyperlink{class_geese}{Geese}} $\ast$ \mbox{\hyperlink{class_flock_a00fde307995418d36deeedbc78f29a7a}{operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool check\+\_\+bounds=true) +\mbox{\hyperlink{class_geese}{Geese}} $\ast$ \mbox{\hyperlink{class_flock_a00fde307995418d36deeedbc78f29a7a}{operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool check\+\_\+bounds=true) \begin{DoxyCompactList}\small\item\em Access the i-\/th geese element. \end{DoxyCompactList}\end{DoxyCompactItemize} \begin{Indent}\textbf{ Information about the model}\par \begin{DoxyCompactItemize} @@ -142,7 +142,7 @@ -Definition at line 224 of file flock-\/meat.\+hpp. +Definition at line 225 of file flock-\/meat.\+hpp. \mbox{\Hypertarget{class_flock_a1010aa9fb40acb618c604c531e2528bb}\label{class_flock_a1010aa9fb40acb618c604c531e2528bb}} \index{Flock@{Flock}!get\_counters@{get\_counters}} @@ -204,7 +204,7 @@ Definition at line 49 of file flock-\/meat.\+hpp. -\mbox{\Hypertarget{class_flock_a275193d11c7ce3b8ec5dc18c8fab3e2e}\label{class_flock_a275193d11c7ce3b8ec5dc18c8fab3e2e}} +\mbox{\Hypertarget{class_flock_a7bcad6b3c794cefc1b4bb613d13ddf71}\label{class_flock_a7bcad6b3c794cefc1b4bb613d13ddf71}} \index{Flock@{Flock}!likelihood\_joint@{likelihood\_joint}} \index{likelihood\_joint@{likelihood\_joint}!Flock@{Flock}} \doxysubsubsection{\texorpdfstring{likelihood\_joint()}{likelihood\_joint()}} @@ -238,7 +238,7 @@ -Definition at line 167 of file flock-\/meat.\+hpp. +Definition at line 168 of file flock-\/meat.\+hpp. \mbox{\Hypertarget{class_flock_a68af1602108455f9d339bc4c2994e9ab}\label{class_flock_a68af1602108455f9d339bc4c2994e9ab}} \index{Flock@{Flock}!nleafs@{nleafs}} @@ -248,7 +248,7 @@ -Definition at line 195 of file flock-\/meat.\+hpp. +Definition at line 196 of file flock-\/meat.\+hpp. \mbox{\Hypertarget{class_flock_ae1f4eb8ade1c7f369e1f1eddbced3b2b}\label{class_flock_ae1f4eb8ade1c7f369e1f1eddbced3b2b}} \index{Flock@{Flock}!nnodes@{nnodes}} @@ -258,7 +258,7 @@ -Definition at line 181 of file flock-\/meat.\+hpp. +Definition at line 182 of file flock-\/meat.\+hpp. \mbox{\Hypertarget{class_flock_a71d5966ea3fda9e2baedf76be6c837c6}\label{class_flock_a71d5966ea3fda9e2baedf76be6c837c6}} \index{Flock@{Flock}!nterms@{nterms}} @@ -268,7 +268,7 @@ -Definition at line 209 of file flock-\/meat.\+hpp. +Definition at line 210 of file flock-\/meat.\+hpp. \mbox{\Hypertarget{class_flock_ae47e9d235c3e3e6f3bb574772f2463d0}\label{class_flock_ae47e9d235c3e3e6f3bb574772f2463d0}} \index{Flock@{Flock}!ntrees@{ntrees}} @@ -278,7 +278,7 @@ -Definition at line 174 of file flock-\/meat.\+hpp. +Definition at line 175 of file flock-\/meat.\+hpp. \mbox{\Hypertarget{class_flock_a00fde307995418d36deeedbc78f29a7a}\label{class_flock_a00fde307995418d36deeedbc78f29a7a}} \index{Flock@{Flock}!operator()@{operator()}} @@ -302,7 +302,7 @@ \end{DoxyReturn} -Definition at line 302 of file flock-\/meat.\+hpp. +Definition at line 303 of file flock-\/meat.\+hpp. \mbox{\Hypertarget{class_flock_a58f2282d4cd764e9912c94b613aa58d2}\label{class_flock_a58f2282d4cd764e9912c94b613aa58d2}} \index{Flock@{Flock}!parse\_polytomies@{parse\_polytomies}} @@ -316,7 +316,7 @@ -Definition at line 231 of file flock-\/meat.\+hpp. +Definition at line 232 of file flock-\/meat.\+hpp. \mbox{\Hypertarget{class_flock_a5ddb72e66fc90f45335e8752e290dc3e}\label{class_flock_a5ddb72e66fc90f45335e8752e290dc3e}} \index{Flock@{Flock}!print@{print}} @@ -326,7 +326,7 @@ -Definition at line 258 of file flock-\/meat.\+hpp. +Definition at line 259 of file flock-\/meat.\+hpp. \mbox{\Hypertarget{class_flock_a15ba537520410f84e924b0eab0a893f4}\label{class_flock_a15ba537520410f84e924b0eab0a893f4}} \index{Flock@{Flock}!set\_seed@{set\_seed}} @@ -355,7 +355,7 @@ -Definition at line 217 of file flock-\/meat.\+hpp. +Definition at line 218 of file flock-\/meat.\+hpp. diff --git a/latex/class_geese.tex b/latex/class_geese.tex index 3e053ea2e..0c033c846 100644 --- a/latex/class_geese.tex +++ b/latex/class_geese.tex @@ -22,7 +22,7 @@ \item void \mbox{\hyperlink{class_geese_a0a460414624fd1b7013ce3b1a09150d1}{calc\+\_\+reduced\+\_\+sequence}} () \item -double \mbox{\hyperlink{class_geese_a6eb9e15bdf70319857e4ad90baefdece}{likelihood}} (const std\+::vector$<$ double $>$ \&par, bool as\+\_\+log=false, bool use\+\_\+reduced\+\_\+sequence=true) +double \mbox{\hyperlink{class_geese_a58fb080f76c71883938b62d5369b6688}{likelihood}} (const std\+::vector$<$ double $>$ \&par, bool as\+\_\+log=false, bool use\+\_\+reduced\+\_\+sequence=true,) \item double \mbox{\hyperlink{class_geese_af2d4bac42cc7c8287fb6853d50882115}{likelihood\+\_\+exhaust}} (const std\+::vector$<$ double $>$ \&par) \item @@ -436,7 +436,7 @@ Definition at line 6 of file geese-\/meat.\+hpp. -\mbox{\Hypertarget{class_geese_a6eb9e15bdf70319857e4ad90baefdece}\label{class_geese_a6eb9e15bdf70319857e4ad90baefdece}} +\mbox{\Hypertarget{class_geese_a58fb080f76c71883938b62d5369b6688}\label{class_geese_a58fb080f76c71883938b62d5369b6688}} \index{Geese@{Geese}!likelihood@{likelihood}} \index{likelihood@{likelihood}!Geese@{Geese}} \doxysubsubsection{\texorpdfstring{likelihood()}{likelihood()}} diff --git a/latex/class_model.tex b/latex/class_model.tex index e121fbde4..95d722256 100644 --- a/latex/class_model.tex +++ b/latex/class_model.tex @@ -30,9 +30,9 @@ \item \mbox{\hyperlink{class_model_a5026c5d72a07db2eff58689fe101a57d}{Model}} (size\+\_\+t size\+\_\+) \item -\mbox{\hyperlink{class_model_a43b71b392309bd71ed7c49f783b8815b}{Model}} (const \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&Model\+\_\+) +\mbox{\hyperlink{class_model_a43b71b392309bd71ed7c49f783b8815b}{Model}} (const \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&Model\+\_\+) \item -\mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_model_a4cf7b0d8d1c1d5996e09b3dbf7599cd6}{operator=}} (const \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&Model\+\_\+) +\mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_model_a4cf7b0d8d1c1d5996e09b3dbf7599cd6}{operator=}} (const \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&Model\+\_\+) \item virtual \mbox{\hyperlink{class_model_a58dc9105b487e0e2d2cb3faa16397ae2}{$\sim$\+Model}} () \item @@ -40,54 +40,54 @@ \item std\+::vector$<$ double $>$ \mbox{\hyperlink{class_model_a5ab59e34639b590094bc2716d056e78c}{gen\+\_\+key}} (const Array\+\_\+\+Type \&Array\+\_\+) \item -size\+\_\+t \mbox{\hyperlink{class_model_a5dd7d23385499070846a2ce5126f5722}{add\+\_\+array}} (const Array\+\_\+\+Type \&Array\+\_\+, bool \mbox{\hyperlink{model-meat_8hpp_a32e3aa42c9a0f6e84cda0c6d011e56f0}{force\+\_\+new}}=false) +size\+\_\+t \mbox{\hyperlink{class_model_a5dd7d23385499070846a2ce5126f5722}{add\+\_\+array}} (const Array\+\_\+\+Type \&Array\+\_\+, bool force\+\_\+new=false) \begin{DoxyCompactList}\small\item\em Adds an array to the support of not already included. \end{DoxyCompactList}\item -void \mbox{\hyperlink{class_model_a72f41dd130d67b171acc433fa288de78}{print\+\_\+stats}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +void \mbox{\hyperlink{class_model_a72f41dd130d67b171acc433fa288de78}{print\+\_\+stats}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item virtual void \mbox{\hyperlink{class_model_a9b882a97407460beb9b97405fac98dd9}{print}} () const \begin{DoxyCompactList}\small\item\em Prints information about the model. \end{DoxyCompactList}\item -Array\+\_\+\+Type \mbox{\hyperlink{class_model_a2adac6eb2d37bd67d5f0222374ce193d}{sample}} (const Array\+\_\+\+Type \&Array\+\_\+, const std\+::vector$<$ double $>$ \&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}=\{\}) +Array\+\_\+\+Type \mbox{\hyperlink{class_model_a2adac6eb2d37bd67d5f0222374ce193d}{sample}} (const Array\+\_\+\+Type \&Array\+\_\+, const std\+::vector$<$ double $>$ \¶ms=\{\}) \item -Array\+\_\+\+Type \mbox{\hyperlink{class_model_ad6d0a2c68540fe6480337a606c14cea6}{sample}} (const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, const std\+::vector$<$ double $>$ \&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}) +Array\+\_\+\+Type \mbox{\hyperlink{class_model_ad6d0a2c68540fe6480337a606c14cea6}{sample}} (const size\+\_\+t \&\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, const std\+::vector$<$ double $>$ \¶ms) \item -double \mbox{\hyperlink{class_model_a3f13aa5080ce580a11892cf6a69fee64}{conditional\+\_\+prob}} (const Array\+\_\+\+Type \&Array\+\_\+, const std\+::vector$<$ double $>$ \&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) +double \mbox{\hyperlink{class_model_a3f13aa5080ce580a11892cf6a69fee64}{conditional\+\_\+prob}} (const Array\+\_\+\+Type \&Array\+\_\+, const std\+::vector$<$ double $>$ \¶ms, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \begin{DoxyCompactList}\small\item\em Conditional probability (\char`\"{}\+Gibbs sampler\char`\"{}) \end{DoxyCompactList}\item -const std\+::mt19937 $\ast$ \mbox{\hyperlink{class_model_ab98a5c50c97fca438b0dc959fe9d5448}{get\+\_\+rengine}} () const +const std\+::mt19937 $\ast$ \mbox{\hyperlink{class_model_a02cac4f649946705bfb4d69bc3a3576f}{get\+\_\+rengine}} () const \item -\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ $\ast$ \mbox{\hyperlink{class_model_ab79035281970e647253bf5c26481e588}{get\+\_\+counters}} () +\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_a2345f3e51002d81bd60cb0b14f006dbd}{get\+\_\+counters}} () \item -\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$ \mbox{\hyperlink{class_model_a4c9d8b857f82d69275f120f2461072b8}{get\+\_\+rules}} () +\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_a8796a5e54c0ba505129db2bc1e452d0d}{get\+\_\+rules}} () \item -\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_aff4a65facf467f1857160abc9cb720f2}{get\+\_\+rules\+\_\+dyn}} () +\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_aff4c85b28ba08c67b6d3308cf94fc30a}{get\+\_\+rules\+\_\+dyn}} () \item -\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_a0a5e28f9d316bbc914a6d8f24071f8c1}{get\+\_\+support\+\_\+fun}} () +\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_a5a887a9d87a1f86ccc783fd27a0a1ddc}{get\+\_\+support\+\_\+fun}} () \end{DoxyCompactItemize} \begin{Indent}\textbf{ Wrappers for the $<$tt$>$Counters$<$/tt$>$ member.}\par {\em These will add counters to the model, which are shared by the support and the actual counter function. }\begin{DoxyCompactItemize} \item -void \mbox{\hyperlink{class_model_a2326ca9975e29d3cf1902b6e60c613b9}{add\+\_\+counter}} (\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ \&\mbox{\hyperlink{statscounter-meat_8hpp_adee42f2c06e4e0d3087f70059908f7d1}{counter}}) +void \mbox{\hyperlink{class_model_a2326ca9975e29d3cf1902b6e60c613b9}{add\+\_\+counter}} (\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ \&\mbox{\hyperlink{statscounter-meat_8hpp_adee42f2c06e4e0d3087f70059908f7d1}{counter}}) \item -void \mbox{\hyperlink{class_model_a60bc7a1e36ed90ff0af62a3999b9d06f}{add\+\_\+counter}} (\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ \mbox{\hyperlink{model-meat_8hpp_a2648076475c82f8bfed17e9c46b36f68}{count\+\_\+fun\+\_\+}}, \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ \mbox{\hyperlink{model-meat_8hpp_aa9ebe808e2d37ce1008f4e98fe5c5c6b}{init\+\_\+fun\+\_\+}}=nullptr, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} \mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}}=nullptr) +void \mbox{\hyperlink{class_model_a60bc7a1e36ed90ff0af62a3999b9d06f}{add\+\_\+counter}} (\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a4c3b0c42e7e960fe3d847ee31a0adc7c}{count\+\_\+fun\+\_\+}}, \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a75f789c12bebd743c636550d811dc23e}{init\+\_\+fun\+\_\+}}=nullptr, Data\+\_\+\+Counter\+\_\+\+Type \mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}}=nullptr) \item -void \mbox{\hyperlink{class_model_a93632a05117d5b862d082885015c9363}{set\+\_\+counters}} (\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a06420c7858d72514761c1cca0654f9c0}{counters\+\_\+}}) +void \mbox{\hyperlink{class_model_a93632a05117d5b862d082885015c9363}{set\+\_\+counters}} (\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a06420c7858d72514761c1cca0654f9c0}{counters\+\_\+}}) \item -void \mbox{\hyperlink{class_model_a5e0ab8493a4aeecacc96d666089c543d}{add\+\_\+hasher}} (\mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ \mbox{\hyperlink{model-meat_8hpp_ab8ef6c3e79d05d9438b72a41339d7842}{fun\+\_\+}}) +void \mbox{\hyperlink{class_model_a5e0ab8493a4aeecacc96d666089c543d}{add\+\_\+hasher}} (\mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a7b9c38a045f3121f0a943d5b980ec17f}{fun\+\_\+}}) \end{DoxyCompactItemize} \end{Indent} \begin{Indent}\textbf{ Wrappers for the $<$tt$>$Rules$<$/tt$>$ member.}\par {\em These will add rules to the model, which are shared by the support and the actual counter function. }\begin{DoxyCompactItemize} \item -void \mbox{\hyperlink{class_model_af9b85db739f6947861fe123136c11c07}{add\+\_\+rule}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ \&rule) +void \mbox{\hyperlink{class_model_af9b85db739f6947861fe123136c11c07}{add\+\_\+rule}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ \&rule) \item -void \mbox{\hyperlink{class_model_a8a27b1ce7513359b61840a15fc661575}{add\+\_\+rule}} (\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ \mbox{\hyperlink{model-meat_8hpp_a2648076475c82f8bfed17e9c46b36f68}{count\+\_\+fun\+\_\+}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} \mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}}) +void \mbox{\hyperlink{class_model_a8a27b1ce7513359b61840a15fc661575}{add\+\_\+rule}} (\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a4c3b0c42e7e960fe3d847ee31a0adc7c}{count\+\_\+fun\+\_\+}}, Data\+\_\+\+Rule\+\_\+\+Type \mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}}) \item -void \mbox{\hyperlink{class_model_a696fd8dc85423d35fee3b9718877abb4}{set\+\_\+rules}} (\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$\mbox{\hyperlink{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}{rules\+\_\+}}) +void \mbox{\hyperlink{class_model_a696fd8dc85423d35fee3b9718877abb4}{set\+\_\+rules}} (\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$rules\+\_\+) \item void \mbox{\hyperlink{class_model_a37a168110eee4743dc5b1af5b67c7f6a}{add\+\_\+rule\+\_\+dyn}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&rule) \item -void \mbox{\hyperlink{class_model_a6df0512038f2eae91f67ef151ae95328}{add\+\_\+rule\+\_\+dyn}} (\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \mbox{\hyperlink{model-meat_8hpp_a2648076475c82f8bfed17e9c46b36f68}{count\+\_\+fun\+\_\+}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type \mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}}) +void \mbox{\hyperlink{class_model_a6df0512038f2eae91f67ef151ae95328}{add\+\_\+rule\+\_\+dyn}} (\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a4c3b0c42e7e960fe3d847ee31a0adc7c}{count\+\_\+fun\+\_\+}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type \mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}}) \item -void \mbox{\hyperlink{class_model_ab200cf9d28983471fa8264fc90071bad}{set\+\_\+rules\+\_\+dyn}} (\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$\mbox{\hyperlink{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}{rules\+\_\+}}) +void \mbox{\hyperlink{class_model_ab200cf9d28983471fa8264fc90071bad}{set\+\_\+rules\+\_\+dyn}} (\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$rules\+\_\+) \end{DoxyCompactItemize} \end{Indent} \begin{Indent}\textbf{ Likelihood functions.}\par @@ -102,15 +102,15 @@ \end{DoxyParams} }\begin{DoxyCompactItemize} \item -double \mbox{\hyperlink{class_model_ad20729924815b8f554a6777261b053f8}{likelihood}} (const std\+::vector$<$ double $>$ \&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool as\+\_\+log=false) +double \mbox{\hyperlink{class_model_a58131c38f2fa6820d513f6b145bc2589}{likelihood}} (const std\+::vector$<$ double $>$ \¶ms, const size\+\_\+t \&\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool as\+\_\+log=false,) \item -double \mbox{\hyperlink{class_model_a42cc1109ccaf9b016a1c1787cd356c0b}{likelihood}} (const std\+::vector$<$ double $>$ \&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, const Array\+\_\+\+Type \&Array\+\_\+, int \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}=-\/1, bool as\+\_\+log=false) +double \mbox{\hyperlink{class_model_ad1eb14faf48bf21732956f3ff27813b2}{likelihood}} (const std\+::vector$<$ double $>$ \¶ms, const Array\+\_\+\+Type \&Array\+\_\+, int \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}=-\/1, bool as\+\_\+log=false,) \item -double \mbox{\hyperlink{class_model_aca89061a811d102768b21455a82daefe}{likelihood}} (const std\+::vector$<$ double $>$ \&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, const std\+::vector$<$ double $>$ \&target\+\_\+, const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool as\+\_\+log=false) +double \mbox{\hyperlink{class_model_a5838b135cd9bf4b9609aaf2e015da1e8}{likelihood}} (const std\+::vector$<$ double $>$ \¶ms, const std\+::vector$<$ double $>$ \&target\+\_\+, const size\+\_\+t \&\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool as\+\_\+log=false,) \item -double \mbox{\hyperlink{class_model_a778f76803109eec3d229ea7333a25c9d}{likelihood}} (const std\+::vector$<$ double $>$ \&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, const double $\ast$target\+\_\+, const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool as\+\_\+log=false) +double \mbox{\hyperlink{class_model_ab32cd7afb0aceba4517db6f3f666ef9f}{likelihood}} (const std\+::vector$<$ double $>$ \¶ms, const double $\ast$target\+\_\+, const size\+\_\+t \&\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool as\+\_\+log=false,) \item -double \mbox{\hyperlink{class_model_a849c382c401986612056d6fdf043deb4}{likelihood\+\_\+total}} (const std\+::vector$<$ double $>$ \&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, bool as\+\_\+log=false) +double \mbox{\hyperlink{class_model_a42aee976ba5f79051e77798cefa7cda1}{likelihood\+\_\+total}} (const std\+::vector$<$ double $>$ \¶ms, bool as\+\_\+log=false,) \end{DoxyCompactItemize} \end{Indent} \begin{Indent}\textbf{ Extract elements by index}\par @@ -125,11 +125,11 @@ \end{DoxyParams} }\begin{DoxyCompactItemize} \item -double \mbox{\hyperlink{class_model_af5a931e39999583e4fe39ebc6db63a26}{get\+\_\+norm\+\_\+const}} (const std\+::vector$<$ double $>$ \&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, bool as\+\_\+log=false) +double \mbox{\hyperlink{class_model_af5a931e39999583e4fe39ebc6db63a26}{get\+\_\+norm\+\_\+const}} (const std\+::vector$<$ double $>$ \¶ms, const size\+\_\+t \&\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, bool as\+\_\+log=false) \item -const std\+::vector$<$ Array\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_a060a8f1c30146e6363c480ffb2fed1bd}{get\+\_\+pset}} (const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) +const std\+::vector$<$ Array\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_aefb5399f2e396d34eb523e00c7d89140}{get\+\_\+pset}} (const size\+\_\+t \&\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) \item -const std\+::vector$<$ double $>$ $\ast$ \mbox{\hyperlink{class_model_ae21259571924ce4abbd3e2f5283cf939}{get\+\_\+pset\+\_\+stats}} (const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) +const std\+::vector$<$ double $>$ $\ast$ \mbox{\hyperlink{class_model_ab19a8398b4f3fb8a21f8ed89aec2fbf7}{get\+\_\+pset\+\_\+stats}} (const size\+\_\+t \&\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) \end{DoxyCompactItemize} \end{Indent} \begin{Indent}\textbf{ Size of the model}\par @@ -164,17 +164,17 @@ \textbf{ }\par \begin{DoxyCompactItemize} \item -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_a6eacbc0a8bb76ae183ec9cc112767dd6}{get\+\_\+stats\+\_\+target}} () +std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_a5414f4d58c598c844bf0e7885e06488a}{get\+\_\+stats\+\_\+target}} () \begin{DoxyCompactList}\small\item\em Raw pointers to the support and target statistics. \end{DoxyCompactList}\item -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_ae32b03e221b22c30eff464dc75787061}{get\+\_\+stats\+\_\+support}} () +std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_a35e9c4103deb9e2deda35c2c61b30289}{get\+\_\+stats\+\_\+support}} () \item -std\+::vector$<$ size\+\_\+t $>$ $\ast$ \mbox{\hyperlink{class_model_a6775390b015ca4a012dea92bcab562f3}{get\+\_\+arrays2support}} () +std\+::vector$<$ size\+\_\+t $>$ $\ast$ \mbox{\hyperlink{class_model_ab705e7531998b61c1358c6cbef773e0d}{get\+\_\+arrays2support}} () \item -std\+::vector$<$ std\+::vector$<$ Array\+\_\+\+Type $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_a43d3242876ee289ecd4e92d8a953cacb}{get\+\_\+pset\+\_\+arrays}} () +std\+::vector$<$ std\+::vector$<$ Array\+\_\+\+Type $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_a567fbbecd8a77f62ada9535f1e56588f}{get\+\_\+pset\+\_\+arrays}} () \item -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_aa22bb94f9de4c87671580d67e8ae66df}{get\+\_\+pset\+\_\+stats}} () +std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_a453d05dbfcef337c385afc7f2000d56b}{get\+\_\+pset\+\_\+stats}} () \begin{DoxyCompactList}\small\item\em Statistics of the support(s) \end{DoxyCompactList}\item -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_a38a7545244ac95aa624496dbf1d71120}{get\+\_\+pset\+\_\+probs}} () +std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model_a248d9516ebc938e2ab5df4f4f9d78121}{get\+\_\+pset\+\_\+probs}} () \end{DoxyCompactItemize} \textbf{ }\par @@ -182,7 +182,7 @@ \item void \mbox{\hyperlink{class_model_aeb964da3f921dae949d1f903eb7accbc}{set\+\_\+transform\+\_\+model}} (std\+::function$<$ std\+::vector$<$ double $>$(double $\ast$, size\+\_\+t)$>$ \mbox{\hyperlink{counters-meat_8hpp_a43a4f45722a62357bc53b2abaaeb999f}{fun}}, std\+::vector$<$ std\+::string $>$ names) \begin{DoxyCompactList}\small\item\em Set the transform\+\_\+model\+\_\+fun object. \end{DoxyCompactList}\item -std\+::vector$<$ double $>$ \mbox{\hyperlink{class_model_a9f17772e230a4790ee6b7d028eca7e26}{transform\+\_\+model}} (double $\ast$\mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}}) +std\+::vector$<$ double $>$ \mbox{\hyperlink{class_model_a9f17772e230a4790ee6b7d028eca7e26}{transform\+\_\+model}} (double $\ast$\mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}, size\+\_\+t k) \end{DoxyCompactItemize} \doxysubsection*{Protected Attributes} @@ -202,7 +202,7 @@ \item bool \mbox{\hyperlink{class_model_a8eb1f7d2e318e598ff8800f71b2732ea}{delete\+\_\+rules\+\_\+dyn}} = false \item -std\+::function$<$ std\+::vector$<$ double $>$double $\ast$, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}})$>$ \mbox{\hyperlink{class_model_ab56e7e3a90d48c2c573ebdcbb01617fd}{transform\+\_\+model\+\_\+fun}} = nullptr +std\+::function$<$ std\+::vector$<$ double $>$double $\ast$, size\+\_\+t k)$>$ \mbox{\hyperlink{class_model_ab56e7e3a90d48c2c573ebdcbb01617fd}{transform\+\_\+model\+\_\+fun}} = nullptr \begin{DoxyCompactList}\small\item\em Transformation of the model. \end{DoxyCompactList}\item std\+::vector$<$ std\+::string $>$ \mbox{\hyperlink{class_model_a029716dd943b3fc3de88eead66404b16}{transform\+\_\+model\+\_\+term\+\_\+names}} \end{DoxyCompactItemize} @@ -250,15 +250,15 @@ \begin{Indent}\textbf{ Functions to compute statistics}\par {\em Arguments are recycled to save memory and computation. }\begin{DoxyCompactItemize} \item -\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ $\ast$ \mbox{\hyperlink{class_model_aeea40760779cd097dbebd645399be966}{counters}} +\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_aeea40760779cd097dbebd645399be966}{counters}} \item -\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$ \mbox{\hyperlink{class_model_a164a37ad8e2016e84b1873e64ba923f0}{rules}} +\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_a164a37ad8e2016e84b1873e64ba923f0}{rules}} \item \mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model_a11d9090903bfe8b35db92fe2579c2de3}{rules\+\_\+dyn}} \item -\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \mbox{\hyperlink{class_model_aaf2432f089c9c40fcb3e0fb3651d929e}{support\+\_\+fun}} +\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \mbox{\hyperlink{class_model_aaf2432f089c9c40fcb3e0fb3651d929e}{support\+\_\+fun}} \item -\mbox{\hyperlink{class_stats_counter}{Stats\+Counter}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ \mbox{\hyperlink{class_model_a1c7792e1ca105ef8599b56b302823962}{counter\+\_\+fun}} +\mbox{\hyperlink{class_stats_counter}{Stats\+Counter}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ \mbox{\hyperlink{class_model_a1c7792e1ca105ef8599b56b302823962}{counter\+\_\+fun}} \end{DoxyCompactItemize} \end{Indent} @@ -294,40 +294,40 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{Model@{Model}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{Model()}{Model()}\hspace{0.1cm}{\footnotesize\ttfamily [1/3]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -\mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_model}{Model}}\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_model}{Model}}\hspace{0.3cm}{\ttfamily [inline]}} -Definition at line 140 of file model-\/meat.\+hpp. +Definition at line 153 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a5026c5d72a07db2eff58689fe101a57d}\label{class_model_a5026c5d72a07db2eff58689fe101a57d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!Model@{Model}} \index{Model@{Model}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{Model()}{Model()}\hspace{0.1cm}{\footnotesize\ttfamily [2/3]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -\mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_model}{Model}} (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{size\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_model}{Model}} (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{size\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} -Definition at line 174 of file model-\/meat.\+hpp. +Definition at line 187 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a43b71b392309bd71ed7c49f783b8815b}\label{class_model_a43b71b392309bd71ed7c49f783b8815b}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!Model@{Model}} \index{Model@{Model}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{Model()}{Model()}\hspace{0.1cm}{\footnotesize\ttfamily [3/3]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -\mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_model}{Model}} (\begin{DoxyParamCaption}\item[{const \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&}]{Model\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_model}{Model}} (\begin{DoxyParamCaption}\item[{const \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&}]{Model\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} -Definition at line 212 of file model-\/meat.\+hpp. +Definition at line 225 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a58dc9105b487e0e2d2cb3faa16397ae2}\label{class_model_a58dc9105b487e0e2d2cb3faa16397ae2}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!````~Model@{$\sim$Model}} \index{````~Model@{$\sim$Model}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{$\sim$Model()}{~Model()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -virtual \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::$\sim$\mbox{\hyperlink{class_model}{Model}} (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [virtual]}} +virtual \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::$\sim$\mbox{\hyperlink{class_model}{Model}} (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [virtual]}} @@ -340,8 +340,8 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_array@{add\_array}} \index{add\_array@{add\_array}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_array()}{add\_array()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+array (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+, }\item[{bool}]{force\+\_\+new = {\ttfamily false} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+array (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+, }\item[{bool}]{force\+\_\+new = {\ttfamily false} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -357,68 +357,100 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \begin{DoxyReturn}{Returns} The number of the array. \end{DoxyReturn} +When computing with the powerset, we need to grow the corresponding vectors on the fly + +Definition at line 458 of file model-\/meat.\+hpp. + \mbox{\Hypertarget{class_model_a2326ca9975e29d3cf1902b6e60c613b9}\label{class_model_a2326ca9975e29d3cf1902b6e60c613b9}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_counter@{add\_counter}} \index{add\_counter@{add\_counter}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_counter()}{add\_counter()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+counter (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ \&}]{counter }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+counter (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ \&}]{counter }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 334 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a60bc7a1e36ed90ff0af62a3999b9d06f}\label{class_model_a60bc7a1e36ed90ff0af62a3999b9d06f}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_counter@{add\_counter}} \index{add\_counter@{add\_counter}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_counter()}{add\_counter()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+counter (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$}]{count\+\_\+fun\+\_\+, }\item[{\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$}]{init\+\_\+fun\+\_\+ = {\ttfamily nullptr}, }\item[{\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}}]{data\+\_\+ = {\ttfamily nullptr} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+counter (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$}]{count\+\_\+fun\+\_\+, }\item[{\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$}]{init\+\_\+fun\+\_\+ = {\ttfamily nullptr}, }\item[{Data\+\_\+\+Counter\+\_\+\+Type}]{data\+\_\+ = {\ttfamily nullptr} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 343 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a5e0ab8493a4aeecacc96d666089c543d}\label{class_model_a5e0ab8493a4aeecacc96d666089c543d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_hasher@{add\_hasher}} \index{add\_hasher@{add\_hasher}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_hasher()}{add\_hasher()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+hasher (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$}]{fun\+\_\+ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+hasher (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$}]{fun\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 378 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_af9b85db739f6947861fe123136c11c07}\label{class_model_af9b85db739f6947861fe123136c11c07}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_rule@{add\_rule}} \index{add\_rule@{add\_rule}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_rule()}{add\_rule()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ \&}]{rule }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ \&}]{rule }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 389 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a8a27b1ce7513359b61840a15fc661575}\label{class_model_a8a27b1ce7513359b61840a15fc661575}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_rule@{add\_rule}} \index{add\_rule@{add\_rule}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_rule()}{add\_rule()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$}]{count\+\_\+fun\+\_\+, }\item[{\mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}}]{data\+\_\+ }\end{DoxyParamCaption})} +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$}]{count\+\_\+fun\+\_\+, }\item[{Data\+\_\+\+Rule\+\_\+\+Type}]{data\+\_\+ }\end{DoxyParamCaption})} \mbox{\Hypertarget{class_model_a37a168110eee4743dc5b1af5b67c7f6a}\label{class_model_a37a168110eee4743dc5b1af5b67c7f6a}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_rule\_dyn@{add\_rule\_dyn}} \index{add\_rule\_dyn@{add\_rule\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_rule\_dyn()}{add\_rule\_dyn()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&}]{rule }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&}]{rule }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 417 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a6df0512038f2eae91f67ef151ae95328}\label{class_model_a6df0512038f2eae91f67ef151ae95328}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!add\_rule\_dyn@{add\_rule\_dyn}} \index{add\_rule\_dyn@{add\_rule\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_rule\_dyn()}{add\_rule\_dyn()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$}]{count\+\_\+fun\+\_\+, }\item[{Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type}]{data\+\_\+ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$}]{count\+\_\+fun\+\_\+, }\item[{Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type}]{data\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 426 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a61b7baf9d45f885832db74fb9cd99c4d}\label{class_model_a61b7baf9d45f885832db74fb9cd99c4d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!colnames@{colnames}} \index{colnames@{colnames}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{colnames()}{colnames()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::string $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::colnames (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +std\+::vector$<$ std\+::string $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::colnames\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 1156 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a3f13aa5080ce580a11892cf6a69fee64}\label{class_model_a3f13aa5080ce580a11892cf6a69fee64}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!conditional\_prob@{conditional\_prob}} \index{conditional\_prob@{conditional\_prob}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{conditional\_prob()}{conditional\_prob()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::conditional\+\_\+prob (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+, }\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{size\+\_\+t}]{i, }\item[{size\+\_\+t}]{j }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::conditional\+\_\+prob (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+, }\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{size\+\_\+t}]{i, }\item[{size\+\_\+t}]{j }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -440,192 +472,288 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \begin{DoxyReturn}{Returns} double The conditional probability \end{DoxyReturn} + + +Definition at line 1421 of file model-\/meat.\+hpp. + \mbox{\Hypertarget{class_model_a5ab59e34639b590094bc2716d056e78c}\label{class_model_a5ab59e34639b590094bc2716d056e78c}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!gen\_key@{gen\_key}} \index{gen\_key@{gen\_key}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{gen\_key()}{gen\_key()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ double $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::gen\+\_\+key (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +std\+::vector$<$ double $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::gen\+\_\+key (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + -\mbox{\Hypertarget{class_model_a6775390b015ca4a012dea92bcab562f3}\label{class_model_a6775390b015ca4a012dea92bcab562f3}} + +Definition at line 327 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_ab705e7531998b61c1358c6cbef773e0d}\label{class_model_ab705e7531998b61c1358c6cbef773e0d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_arrays2support@{get\_arrays2support}} \index{get\_arrays2support@{get\_arrays2support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_arrays2support()}{get\_arrays2support()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ size\+\_\+t $>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+arrays2support (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +std\+::vector$<$ size\+\_\+t $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+arrays2support\hspace{0.3cm}{\ttfamily [inline]}} + + -\mbox{\Hypertarget{class_model_ab79035281970e647253bf5c26481e588}\label{class_model_ab79035281970e647253bf5c26481e588}} +Definition at line 1492 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_a2345f3e51002d81bd60cb0b14f006dbd}\label{class_model_a2345f3e51002d81bd60cb0b14f006dbd}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_counters@{get\_counters}} \index{get\_counters@{get\_counters}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_counters()}{get\_counters()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_counters}{Counters}}$<$Array\+\_\+\+Type,\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}$>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+counters (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+counters\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 1459 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_af5a931e39999583e4fe39ebc6db63a26}\label{class_model_af5a931e39999583e4fe39ebc6db63a26}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_norm\_const@{get\_norm\_const}} \index{get\_norm\_const@{get\_norm\_const}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_norm\_const()}{get\_norm\_const()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+norm\+\_\+const (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{const size\+\_\+t \&}]{i, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+norm\+\_\+const (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{const size\+\_\+t \&}]{i, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + -\mbox{\Hypertarget{class_model_a060a8f1c30146e6363c480ffb2fed1bd}\label{class_model_a060a8f1c30146e6363c480ffb2fed1bd}} +Definition at line 946 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_aefb5399f2e396d34eb523e00c7d89140}\label{class_model_aefb5399f2e396d34eb523e00c7d89140}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset@{get\_pset}} \index{get\_pset@{get\_pset}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_pset()}{get\_pset()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -const std\+::vector$<$ Array\+\_\+\+Type $>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+pset (\begin{DoxyParamCaption}\item[{const size\+\_\+t \&}]{i }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +const std\+::vector$<$ Array\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+pset (\begin{DoxyParamCaption}\item[{const size\+\_\+t \&}]{i }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} -\mbox{\Hypertarget{class_model_a43d3242876ee289ecd4e92d8a953cacb}\label{class_model_a43d3242876ee289ecd4e92d8a953cacb}} + + +Definition at line 983 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_a567fbbecd8a77f62ada9535f1e56588f}\label{class_model_a567fbbecd8a77f62ada9535f1e56588f}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_arrays@{get\_pset\_arrays}} \index{get\_pset\_arrays@{get\_pset\_arrays}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_pset\_arrays()}{get\_pset\_arrays()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$ Array\+\_\+\+Type $>$ $>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+pset\+\_\+arrays (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +std\+::vector$<$ std\+::vector$<$ Array\+\_\+\+Type $>$ $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+pset\+\_\+arrays\hspace{0.3cm}{\ttfamily [inline]}} + + -\mbox{\Hypertarget{class_model_a38a7545244ac95aa624496dbf1d71120}\label{class_model_a38a7545244ac95aa624496dbf1d71120}} +Definition at line 1498 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_a248d9516ebc938e2ab5df4f4f9d78121}\label{class_model_a248d9516ebc938e2ab5df4f4f9d78121}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_probs@{get\_pset\_probs}} \index{get\_pset\_probs@{get\_pset\_probs}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_pset\_probs()}{get\_pset\_probs()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$double$>$ $>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+pset\+\_\+probs (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+pset\+\_\+probs\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 1508 of file model-\/meat.\+hpp. -\mbox{\Hypertarget{class_model_aa22bb94f9de4c87671580d67e8ae66df}\label{class_model_aa22bb94f9de4c87671580d67e8ae66df}} +\mbox{\Hypertarget{class_model_a453d05dbfcef337c385afc7f2000d56b}\label{class_model_a453d05dbfcef337c385afc7f2000d56b}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_stats@{get\_pset\_stats}} \index{get\_pset\_stats@{get\_pset\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_pset\_stats()}{get\_pset\_stats()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$double$>$ $>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+pset\+\_\+stats (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+pset\+\_\+stats\hspace{0.3cm}{\ttfamily [inline]}} Statistics of the support(s) -\mbox{\Hypertarget{class_model_ae21259571924ce4abbd3e2f5283cf939}\label{class_model_ae21259571924ce4abbd3e2f5283cf939}} + + +Definition at line 1503 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_ab19a8398b4f3fb8a21f8ed89aec2fbf7}\label{class_model_ab19a8398b4f3fb8a21f8ed89aec2fbf7}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_stats@{get\_pset\_stats}} \index{get\_pset\_stats@{get\_pset\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_pset\_stats()}{get\_pset\_stats()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -const std\+::vector$<$ double $>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+pset\+\_\+stats (\begin{DoxyParamCaption}\item[{const size\+\_\+t \&}]{i }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +const std\+::vector$<$ double $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+pset\+\_\+stats (\begin{DoxyParamCaption}\item[{const size\+\_\+t \&}]{i }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} -\mbox{\Hypertarget{class_model_ab98a5c50c97fca438b0dc959fe9d5448}\label{class_model_ab98a5c50c97fca438b0dc959fe9d5448}} + + +Definition at line 996 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_a02cac4f649946705bfb4d69bc3a3576f}\label{class_model_a02cac4f649946705bfb4d69bc3a3576f}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rengine@{get\_rengine}} \index{get\_rengine@{get\_rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_rengine()}{get\_rengine()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -const std\+::mt19937$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+rengine (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +const std\+::mt19937 $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+rengine\hspace{0.3cm}{\ttfamily [inline]}} + -\mbox{\Hypertarget{class_model_a4c9d8b857f82d69275f120f2461072b8}\label{class_model_a4c9d8b857f82d69275f120f2461072b8}} + +Definition at line 1454 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_a8796a5e54c0ba505129db2bc1e452d0d}\label{class_model_a8796a5e54c0ba505129db2bc1e452d0d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rules@{get\_rules}} \index{get\_rules@{get\_rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_rules()}{get\_rules()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_rules}{Rules}}$<$Array\+\_\+\+Type,\mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}$>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+rules (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+rules\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 1464 of file model-\/meat.\+hpp. -\mbox{\Hypertarget{class_model_aff4a65facf467f1857160abc9cb720f2}\label{class_model_aff4a65facf467f1857160abc9cb720f2}} +\mbox{\Hypertarget{class_model_aff4c85b28ba08c67b6d3308cf94fc30a}\label{class_model_aff4c85b28ba08c67b6d3308cf94fc30a}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rules\_dyn@{get\_rules\_dyn}} \index{get\_rules\_dyn@{get\_rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_rules\_dyn()}{get\_rules\_dyn()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_rules}{Rules}}$<$Array\+\_\+\+Type,Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type$>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+rules\+\_\+dyn (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+rules\+\_\+dyn\hspace{0.3cm}{\ttfamily [inline]}} + -\mbox{\Hypertarget{class_model_ae32b03e221b22c30eff464dc75787061}\label{class_model_ae32b03e221b22c30eff464dc75787061}} + +Definition at line 1469 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_a35e9c4103deb9e2deda35c2c61b30289}\label{class_model_a35e9c4103deb9e2deda35c2c61b30289}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_stats\_support@{get\_stats\_support}} \index{get\_stats\_support@{get\_stats\_support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_stats\_support()}{get\_stats\_support()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$ double $>$ $>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+stats\+\_\+support (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+stats\+\_\+support\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 1486 of file model-\/meat.\+hpp. -\mbox{\Hypertarget{class_model_a6eacbc0a8bb76ae183ec9cc112767dd6}\label{class_model_a6eacbc0a8bb76ae183ec9cc112767dd6}} +\mbox{\Hypertarget{class_model_a5414f4d58c598c844bf0e7885e06488a}\label{class_model_a5414f4d58c598c844bf0e7885e06488a}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_stats\_target@{get\_stats\_target}} \index{get\_stats\_target@{get\_stats\_target}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_stats\_target()}{get\_stats\_target()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$ double $>$ $>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+stats\+\_\+target (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+stats\+\_\+target\hspace{0.3cm}{\ttfamily [inline]}} Raw pointers to the support and target statistics. -The support of the model is stored as a vector of vector$<$double$>$. Each element of it contains the support for an specific type of array included. It represents an array of size {\ttfamily (k + 1) x n unique elements}, with the data stored by-\/row. The last element of each entry corresponds to the weights, i.\+e., the frequency with which such sufficient statistics are observed in the support. \mbox{\Hypertarget{class_model_a0a5e28f9d316bbc914a6d8f24071f8c1}\label{class_model_a0a5e28f9d316bbc914a6d8f24071f8c1}} +The support of the model is stored as a vector of vector$<$double$>$. Each element of it contains the support for an specific type of array included. It represents an array of size {\ttfamily (k + 1) x n unique elements}, with the data stored by-\/row. The last element of each entry corresponds to the weights, i.\+e., the frequency with which such sufficient statistics are observed in the support. + +Definition at line 1480 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_a5a887a9d87a1f86ccc783fd27a0a1ddc}\label{class_model_a5a887a9d87a1f86ccc783fd27a0a1ddc}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_support\_fun@{get\_support\_fun}} \index{get\_support\_fun@{get\_support\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_support\_fun()}{get\_support\_fun()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_support}{Support}}$<$Array\+\_\+\+Type,\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}},\mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}},Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type$>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+support\+\_\+fun (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+support\+\_\+fun\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 1475 of file model-\/meat.\+hpp. -\mbox{\Hypertarget{class_model_a42cc1109ccaf9b016a1c1787cd356c0b}\label{class_model_a42cc1109ccaf9b016a1c1787cd356c0b}} +\mbox{\Hypertarget{class_model_ad1eb14faf48bf21732956f3ff27813b2}\label{class_model_ad1eb14faf48bf21732956f3ff27813b2}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}} \index{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{likelihood()}{likelihood()}\hspace{0.1cm}{\footnotesize\ttfamily [1/4]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::likelihood (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+, }\item[{int}]{i = {\ttfamily -\/1}, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::likelihood (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+, }\item[{int}]{i = {\ttfamily -\/1}, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + -\mbox{\Hypertarget{class_model_a778f76803109eec3d229ea7333a25c9d}\label{class_model_a778f76803109eec3d229ea7333a25c9d}} +Definition at line 643 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_ab32cd7afb0aceba4517db6f3f666ef9f}\label{class_model_ab32cd7afb0aceba4517db6f3f666ef9f}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}} \index{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{likelihood()}{likelihood()}\hspace{0.1cm}{\footnotesize\ttfamily [2/4]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::likelihood (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{const double $\ast$}]{target\+\_\+, }\item[{const size\+\_\+t \&}]{i, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::likelihood (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{const double $\ast$}]{target\+\_\+, }\item[{const size\+\_\+t \&}]{i, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} -\mbox{\Hypertarget{class_model_ad20729924815b8f554a6777261b053f8}\label{class_model_ad20729924815b8f554a6777261b053f8}} + + +Definition at line 798 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_a58131c38f2fa6820d513f6b145bc2589}\label{class_model_a58131c38f2fa6820d513f6b145bc2589}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}} \index{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{likelihood()}{likelihood()}\hspace{0.1cm}{\footnotesize\ttfamily [3/4]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::likelihood (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{const size\+\_\+t \&}]{i, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::likelihood (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{const size\+\_\+t \&}]{i, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + -\mbox{\Hypertarget{class_model_aca89061a811d102768b21455a82daefe}\label{class_model_aca89061a811d102768b21455a82daefe}} + +Definition at line 594 of file model-\/meat.\+hpp. + +\mbox{\Hypertarget{class_model_a5838b135cd9bf4b9609aaf2e015da1e8}\label{class_model_a5838b135cd9bf4b9609aaf2e015da1e8}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}} \index{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{likelihood()}{likelihood()}\hspace{0.1cm}{\footnotesize\ttfamily [4/4]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::likelihood (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{const std\+::vector$<$ double $>$ \&}]{target\+\_\+, }\item[{const size\+\_\+t \&}]{i, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::likelihood (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{const std\+::vector$<$ double $>$ \&}]{target\+\_\+, }\item[{const size\+\_\+t \&}]{i, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 729 of file model-\/meat.\+hpp. -\mbox{\Hypertarget{class_model_a849c382c401986612056d6fdf043deb4}\label{class_model_a849c382c401986612056d6fdf043deb4}} +\mbox{\Hypertarget{class_model_a42aee976ba5f79051e77798cefa7cda1}\label{class_model_a42aee976ba5f79051e77798cefa7cda1}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood\_total@{likelihood\_total}} \index{likelihood\_total@{likelihood\_total}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{likelihood\_total()}{likelihood\_total()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::likelihood\+\_\+total (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +double \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::likelihood\+\_\+total (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{params, }\item[{bool}]{as\+\_\+log = {\ttfamily false} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 874 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a6a1213e74dd4d7ce7b0071a664b6f3b3}\label{class_model_a6a1213e74dd4d7ce7b0071a664b6f3b3}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nrules@{nrules}} \index{nrules@{nrules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{nrules()}{nrules()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::nrules (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::nrules\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [noexcept]}} + + + +Definition at line 1127 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a9a9ea5238be86c147f9ec264eb51b984}\label{class_model_a9a9ea5238be86c147f9ec264eb51b984}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nrules\_dyn@{nrules\_dyn}} \index{nrules\_dyn@{nrules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{nrules\_dyn()}{nrules\_dyn()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::nrules\+\_\+dyn (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::nrules\+\_\+dyn\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [noexcept]}} + + + +Definition at line 1135 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a79ebbea31dc3742c37eba173c25acd5d}\label{class_model_a79ebbea31dc3742c37eba173c25acd5d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nterms@{nterms}} \index{nterms@{nterms}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{nterms()}{nterms()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::nterms (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::nterms\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [noexcept]}} + + + +Definition at line 1116 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a4cf7b0d8d1c1d5996e09b3dbf7599cd6}\label{class_model_a4cf7b0d8d1c1d5996e09b3dbf7599cd6}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!operator=@{operator=}} \index{operator=@{operator=}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{operator=()}{operator=()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -\mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::operator= (\begin{DoxyParamCaption}\item[{const \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&}]{Model\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \& \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::operator= (\begin{DoxyParamCaption}\item[{const \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \&}]{Model\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} -Definition at line 256 of file model-\/meat.\+hpp. +Definition at line 269 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a9b882a97407460beb9b97405fac98dd9}\label{class_model_a9b882a97407460beb9b97405fac98dd9}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!print@{print}} \index{print@{print}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{print()}{print()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::print\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [virtual]}} +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::print\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [virtual]}} @@ -633,46 +761,58 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D -Definition at line 980 of file model-\/meat.\+hpp. +Definition at line 1038 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a72f41dd130d67b171acc433fa288de78}\label{class_model_a72f41dd130d67b171acc433fa288de78}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!print\_stats@{print\_stats}} \index{print\_stats@{print\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{print\_stats()}{print\_stats()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::print\+\_\+stats (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{i }\end{DoxyParamCaption}) const} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::print\+\_\+stats (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{i }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 1008 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a2adac6eb2d37bd67d5f0222374ce193d}\label{class_model_a2adac6eb2d37bd67d5f0222374ce193d}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!sample@{sample}} \index{sample@{sample}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{sample()}{sample()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -Array\+\_\+\+Type \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::sample (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+, }\item[{const std\+::vector$<$ double $>$ \&}]{params = {\ttfamily \{\}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +Array\+\_\+\+Type \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::sample (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+, }\item[{const std\+::vector$<$ double $>$ \&}]{params = {\ttfamily \{\}} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + +When computing with the powerset, we need to grow the corresponding vectors on the fly + +Definition at line 1252 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_ad6d0a2c68540fe6480337a606c14cea6}\label{class_model_ad6d0a2c68540fe6480337a606c14cea6}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!sample@{sample}} \index{sample@{sample}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{sample()}{sample()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -Array\+\_\+\+Type \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::sample (\begin{DoxyParamCaption}\item[{const size\+\_\+t \&}]{i, }\item[{const std\+::vector$<$ double $>$ \&}]{params }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +Array\+\_\+\+Type \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::sample (\begin{DoxyParamCaption}\item[{const size\+\_\+t \&}]{i, }\item[{const std\+::vector$<$ double $>$ \&}]{params }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} -Definition at line 1107 of file model-\/meat.\+hpp. +Definition at line 1172 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a93632a05117d5b862d082885015c9363}\label{class_model_a93632a05117d5b862d082885015c9363}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_counters@{set\_counters}} \index{set\_counters@{set\_counters}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{set\_counters()}{set\_counters()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+counters (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ $\ast$}]{counters\+\_\+ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+counters (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ $\ast$}]{counters\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 360 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_af86cd3bfb4b3c929a263090950435a3c}\label{class_model_af86cd3bfb4b3c929a263090950435a3c}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rengine@{set\_rengine}} \index{set\_rengine@{set\_rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{set\_rengine()}{set\_rengine()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+rengine (\begin{DoxyParamCaption}\item[{std\+::mt19937 $\ast$}]{rengine\+\_\+, }\item[{bool}]{delete\+\_\+ = {\ttfamily false} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+rengine (\begin{DoxyParamCaption}\item[{std\+::mt19937 $\ast$}]{rengine\+\_\+, }\item[{bool}]{delete\+\_\+ = {\ttfamily false} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -682,22 +822,30 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rules@{set\_rules}} \index{set\_rules@{set\_rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{set\_rules()}{set\_rules()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+rules (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$}]{rules\+\_\+ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+rules (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$}]{rules\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 399 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_ab200cf9d28983471fa8264fc90071bad}\label{class_model_ab200cf9d28983471fa8264fc90071bad}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rules\_dyn@{set\_rules\_dyn}} \index{set\_rules\_dyn@{set\_rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{set\_rules\_dyn()}{set\_rules\_dyn()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+rules\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$}]{rules\+\_\+ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+rules\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$}]{rules\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} + + + +Definition at line 441 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_afe7f86754248416469456f98f493c9b5}\label{class_model_afe7f86754248416469456f98f493c9b5}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_seed@{set\_seed}} \index{set\_seed@{set\_seed}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{set\_seed()}{set\_seed()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+seed (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{s }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+seed (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{s }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -707,8 +855,8 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_transform\_model@{set\_transform\_model}} \index{set\_transform\_model@{set\_transform\_model}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{set\_transform\_model()}{set\_transform\_model()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+transform\+\_\+model (\begin{DoxyParamCaption}\item[{std\+::function$<$ std\+::vector$<$ double $>$(double $\ast$, size\+\_\+t)$>$}]{fun, }\item[{std\+::vector$<$ std\+::string $>$}]{names }\end{DoxyParamCaption})} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+transform\+\_\+model (\begin{DoxyParamCaption}\item[{std\+::function$<$ std\+::vector$<$ double $>$(double $\ast$, size\+\_\+t)$>$}]{fun, }\item[{std\+::vector$<$ std\+::string $>$}]{names }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -727,40 +875,60 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D {\em arrays2support} & \\ \hline \end{DoxyParams} + + +Definition at line 1513 of file model-\/meat.\+hpp. + \mbox{\Hypertarget{class_model_a1d45ad43d7aa468deb326074e110524b}\label{class_model_a1d45ad43d7aa468deb326074e110524b}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!size@{size}} \index{size@{size}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{size()}{size()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::size (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::size\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [noexcept]}} + + + +Definition at line 1099 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a0261a55996a1707b9bae97544f1fabf8}\label{class_model_a0261a55996a1707b9bae97544f1fabf8}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!size\_unique@{size\_unique}} \index{size\_unique@{size\_unique}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{size\_unique()}{size\_unique()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::size\+\_\+unique (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::size\+\_\+unique\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [noexcept]}} + + + +Definition at line 1107 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a3e8c4587b259d60fcf7c70c7e3f55082}\label{class_model_a3e8c4587b259d60fcf7c70c7e3f55082}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!store\_psets@{store\_psets}} \index{store\_psets@{store\_psets}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{store\_psets()}{store\_psets()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::store\+\_\+psets (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [noexcept]}} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +void \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::store\+\_\+psets\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [noexcept]}} + + + +Definition at line 319 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a98e5f6188b1d3235efa61b72f4562741}\label{class_model_a98e5f6188b1d3235efa61b72f4562741}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!support\_size@{support\_size}} \index{support\_size@{support\_size}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{support\_size()}{support\_size()}} -{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::support\+\_\+size (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} +{\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ +size\+\_\+t \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::support\+\_\+size\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [noexcept]}} + + + +Definition at line 1143 of file model-\/meat.\+hpp. \mbox{\Hypertarget{class_model_a9f17772e230a4790ee6b7d028eca7e26}\label{class_model_a9f17772e230a4790ee6b7d028eca7e26}} \index{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model@{transform\_model}} \index{transform\_model@{transform\_model}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{transform\_model()}{transform\_model()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$double$>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::transform\+\_\+model (\begin{DoxyParamCaption}\item[{double $\ast$}]{data, }\item[{size\+\_\+t}]{k }\end{DoxyParamCaption})} +std\+::vector$<$double$>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::transform\+\_\+model (\begin{DoxyParamCaption}\item[{double $\ast$}]{data, }\item[{size\+\_\+t}]{k }\end{DoxyParamCaption})} @@ -770,7 +938,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{arrays2support@{arrays2support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{arrays2support}{arrays2support}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::arrays2support\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::arrays2support\hspace{0.3cm}{\ttfamily [protected]}} @@ -781,7 +949,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{counter\_fun@{counter\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{counter\_fun}{counter\_fun}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_stats_counter}{Stats\+Counter}}$<$Array\+\_\+\+Type,\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}$>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::counter\+\_\+fun\hspace{0.3cm}{\ttfamily [protected]}} +\mbox{\hyperlink{class_stats_counter}{Stats\+Counter}}$<$Array\+\_\+\+Type,Data\+\_\+\+Counter\+\_\+\+Type$>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::counter\+\_\+fun\hspace{0.3cm}{\ttfamily [protected]}} @@ -792,7 +960,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{counters@{counters}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{counters}{counters}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_counters}{Counters}}$<$Array\+\_\+\+Type,\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}$>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::counters\hspace{0.3cm}{\ttfamily [protected]}} +\mbox{\hyperlink{class_counters}{Counters}}$<$Array\+\_\+\+Type,Data\+\_\+\+Counter\+\_\+\+Type$>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::counters\hspace{0.3cm}{\ttfamily [protected]}} @@ -803,7 +971,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{delete\_counters@{delete\_counters}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{delete\_counters}{delete\_counters}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -bool \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+counters = false\hspace{0.3cm}{\ttfamily [protected]}} +bool \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+counters = false\hspace{0.3cm}{\ttfamily [protected]}} @@ -814,7 +982,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{delete\_rengine@{delete\_rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{delete\_rengine}{delete\_rengine}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -bool \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+rengine = false\hspace{0.3cm}{\ttfamily [protected]}} +bool \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+rengine = false\hspace{0.3cm}{\ttfamily [protected]}} @@ -825,7 +993,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{delete\_rules@{delete\_rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{delete\_rules}{delete\_rules}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -bool \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+rules = false\hspace{0.3cm}{\ttfamily [protected]}} +bool \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+rules = false\hspace{0.3cm}{\ttfamily [protected]}} @@ -836,7 +1004,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{delete\_rules\_dyn@{delete\_rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{delete\_rules\_dyn}{delete\_rules\_dyn}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -bool \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+rules\+\_\+dyn = false\hspace{0.3cm}{\ttfamily [protected]}} +bool \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+rules\+\_\+dyn = false\hspace{0.3cm}{\ttfamily [protected]}} @@ -847,7 +1015,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{first\_calc\_done@{first\_calc\_done}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{first\_calc\_done}{first\_calc\_done}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ bool $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::first\+\_\+calc\+\_\+done\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ bool $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::first\+\_\+calc\+\_\+done\hspace{0.3cm}{\ttfamily [protected]}} @@ -858,7 +1026,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{keys2support@{keys2support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{keys2support}{keys2support}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{typedefs_8hpp_a02ed8dec96bc528c8bc3d8cb3c4674a5}{Map\+Vec\+\_\+type}}$<$ double, size\+\_\+t $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::keys2support\hspace{0.3cm}{\ttfamily [protected]}} +\mbox{\hyperlink{typedefs_8hpp_a02ed8dec96bc528c8bc3d8cb3c4674a5}{Map\+Vec\+\_\+type}}$<$ double, size\+\_\+t $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::keys2support\hspace{0.3cm}{\ttfamily [protected]}} @@ -873,7 +1041,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{normalizing\_constants@{normalizing\_constants}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{normalizing\_constants}{normalizing\_constants}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ double $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::normalizing\+\_\+constants\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ double $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::normalizing\+\_\+constants\hspace{0.3cm}{\ttfamily [protected]}} @@ -884,7 +1052,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{params\_last@{params\_last}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{params\_last}{params\_last}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$double$>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::params\+\_\+last\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ std\+::vector$<$double$>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::params\+\_\+last\hspace{0.3cm}{\ttfamily [protected]}} @@ -899,7 +1067,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{pset\_arrays@{pset\_arrays}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{pset\_arrays}{pset\_arrays}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$ Array\+\_\+\+Type $>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::pset\+\_\+arrays\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ std\+::vector$<$ Array\+\_\+\+Type $>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::pset\+\_\+arrays\hspace{0.3cm}{\ttfamily [protected]}} @@ -914,7 +1082,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{pset\_probs@{pset\_probs}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{pset\_probs}{pset\_probs}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$double$>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::pset\+\_\+probs\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ std\+::vector$<$double$>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::pset\+\_\+probs\hspace{0.3cm}{\ttfamily [protected]}} @@ -929,7 +1097,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{pset\_stats@{pset\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{pset\_stats}{pset\_stats}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$double$>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::pset\+\_\+stats\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ std\+::vector$<$double$>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::pset\+\_\+stats\hspace{0.3cm}{\ttfamily [protected]}} @@ -944,7 +1112,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{rengine@{rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{rengine}{rengine}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::mt19937$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::rengine = nullptr\hspace{0.3cm}{\ttfamily [protected]}} +std\+::mt19937$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::rengine = nullptr\hspace{0.3cm}{\ttfamily [protected]}} @@ -955,7 +1123,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{rules@{rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{rules}{rules}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_rules}{Rules}}$<$Array\+\_\+\+Type,\mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}$>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::rules\hspace{0.3cm}{\ttfamily [protected]}} +\mbox{\hyperlink{class_rules}{Rules}}$<$Array\+\_\+\+Type,Data\+\_\+\+Rule\+\_\+\+Type$>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::rules\hspace{0.3cm}{\ttfamily [protected]}} @@ -966,7 +1134,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{rules\_dyn@{rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{rules\_dyn}{rules\_dyn}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_rules}{Rules}}$<$Array\+\_\+\+Type,Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type$>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::rules\+\_\+dyn\hspace{0.3cm}{\ttfamily [protected]}} +\mbox{\hyperlink{class_rules}{Rules}}$<$Array\+\_\+\+Type,Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type$>$$\ast$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::rules\+\_\+dyn\hspace{0.3cm}{\ttfamily [protected]}} @@ -977,7 +1145,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{stats\_support@{stats\_support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{stats\_support}{stats\_support}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::stats\+\_\+support\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ std\+::vector$<$ double $>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::stats\+\_\+support\hspace{0.3cm}{\ttfamily [protected]}} @@ -992,7 +1160,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{stats\_support\_n\_arrays@{stats\_support\_n\_arrays}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{stats\_support\_n\_arrays}{stats\_support\_n\_arrays}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::stats\+\_\+support\+\_\+n\+\_\+arrays\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::stats\+\_\+support\+\_\+n\+\_\+arrays\hspace{0.3cm}{\ttfamily [protected]}} @@ -1007,7 +1175,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{stats\_target@{stats\_target}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{stats\_target}{stats\_target}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::vector$<$ double $>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::stats\+\_\+target\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ std\+::vector$<$ double $>$ $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::stats\+\_\+target\hspace{0.3cm}{\ttfamily [protected]}} @@ -1022,7 +1190,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{support\_fun@{support\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{support\_fun}{support\_fun}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_support}{Support}}$<$Array\+\_\+\+Type,\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}},\mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}},Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type$>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::support\+\_\+fun\hspace{0.3cm}{\ttfamily [protected]}} +\mbox{\hyperlink{class_support}{Support}}$<$Array\+\_\+\+Type,Data\+\_\+\+Counter\+\_\+\+Type,Data\+\_\+\+Rule\+\_\+\+Type,Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type$>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::support\+\_\+fun\hspace{0.3cm}{\ttfamily [protected]}} @@ -1033,7 +1201,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{transform\_model\_fun@{transform\_model\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{transform\_model\_fun}{transform\_model\_fun}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::function$<$std\+::vector$<$double$>$double $\ast$, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}})$>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::transform\+\_\+model\+\_\+fun = nullptr\hspace{0.3cm}{\ttfamily [protected]}} +std\+::function$<$std\+::vector$<$double$>$double $\ast$, size\+\_\+t k)$>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::transform\+\_\+model\+\_\+fun = nullptr\hspace{0.3cm}{\ttfamily [protected]}} @@ -1059,7 +1227,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{transform\_model\_term\_names@{transform\_model\_term\_names}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{transform\_model\_term\_names}{transform\_model\_term\_names}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ std\+::string $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::transform\+\_\+model\+\_\+term\+\_\+names\hspace{0.3cm}{\ttfamily [protected]}} +std\+::vector$<$ std\+::string $>$ \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::transform\+\_\+model\+\_\+term\+\_\+names\hspace{0.3cm}{\ttfamily [protected]}} @@ -1070,7 +1238,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{with\_pset@{with\_pset}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{with\_pset}{with\_pset}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -bool \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::with\+\_\+pset = false\hspace{0.3cm}{\ttfamily [protected]}} +bool \mbox{\hyperlink{class_model}{Model}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::with\+\_\+pset = false\hspace{0.3cm}{\ttfamily [protected]}} diff --git a/latex/class_model__coll__graph.pdf b/latex/class_model__coll__graph.pdf index 10c1cf548..5a2dd89b9 100644 Binary files a/latex/class_model__coll__graph.pdf and b/latex/class_model__coll__graph.pdf differ diff --git a/latex/class_node__coll__graph.pdf b/latex/class_node__coll__graph.pdf index 6e5cafc9b..9ff173659 100644 Binary files a/latex/class_node__coll__graph.pdf and b/latex/class_node__coll__graph.pdf differ diff --git a/latex/class_phylo_counter_data.tex b/latex/class_phylo_counter_data.tex index 591c376cc..48bcea890 100644 --- a/latex/class_phylo_counter_data.tex +++ b/latex/class_phylo_counter_data.tex @@ -7,7 +7,7 @@ \doxysubsection*{Public Member Functions} \begin{DoxyCompactItemize} \item -\mbox{\hyperlink{class_phylo_counter_data_a83e29bcda4154007285a471bf49f5b50}{Phylo\+Counter\+Data}} (std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}}, std\+::vector$<$ double $>$ $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a06420c7858d72514761c1cca0654f9c0}{counters\+\_\+}}=nullptr) +\mbox{\hyperlink{class_phylo_counter_data_a83e29bcda4154007285a471bf49f5b50}{Phylo\+Counter\+Data}} (std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}}, std\+::vector$<$ double $>$ $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a06420c7858d72514761c1cca0654f9c0}{counters\+\_\+}}=nullptr) \item \mbox{\hyperlink{class_phylo_counter_data_af49e627a2b24ef4290889f30870aef5d}{Phylo\+Counter\+Data}} () \item diff --git a/latex/class_power_set.tex b/latex/class_power_set.tex index 7da796929..334e83089 100644 --- a/latex/class_power_set.tex +++ b/latex/class_power_set.tex @@ -43,9 +43,9 @@ \begin{Indent}\textbf{ Wrappers for the $<$tt$>$Rules$<$/tt$>$ member.}\par {\em These will add rules to the model, which are shared by the support and the actual counter function. }\begin{DoxyCompactItemize} \item -void \mbox{\hyperlink{class_power_set_a76d15305bc98b5c03904398e81457368}{add\+\_\+rule}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ rule) +void \mbox{\hyperlink{class_power_set_a76d15305bc98b5c03904398e81457368}{add\+\_\+rule}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ rule) \item -void \mbox{\hyperlink{class_power_set_a3c9f2ab6184688d9879c6555b4c3e813}{add\+\_\+rule}} (\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ \mbox{\hyperlink{model-meat_8hpp_a2648076475c82f8bfed17e9c46b36f68}{count\+\_\+fun\+\_\+}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} \mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}}) +void \mbox{\hyperlink{class_power_set_a3c9f2ab6184688d9879c6555b4c3e813}{add\+\_\+rule}} (\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a4c3b0c42e7e960fe3d847ee31a0adc7c}{count\+\_\+fun\+\_\+}}, Data\+\_\+\+Rule\+\_\+\+Type \mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}}) \end{DoxyCompactItemize} \end{Indent} \begin{Indent}\textbf{ Getter functions}\par @@ -61,7 +61,7 @@ \item std\+::size\+\_\+t \mbox{\hyperlink{class_power_set_a9a92b7c43517e11f3245a7ae89a578ef}{size}} () const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} \item -const Array\+\_\+\+Type \& \mbox{\hyperlink{class_power_set_ab237095aa18a4997a3cec61d64cfe1dc}{operator\mbox{[}$\,$\mbox{]}}} (const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +const Array\+\_\+\+Type \& \mbox{\hyperlink{class_power_set_ab237095aa18a4997a3cec61d64cfe1dc}{operator\mbox{[}$\,$\mbox{]}}} (const size\+\_\+t \&\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \end{DoxyCompactItemize} \end{Indent} \doxysubsection*{Public Attributes} @@ -71,7 +71,7 @@ \item std\+::vector$<$ Array\+\_\+\+Type $>$ \mbox{\hyperlink{class_power_set_af456c157d157692ba5890c549c51af75}{data}} \item -\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$ \mbox{\hyperlink{class_power_set_afa542ecc31858c8644d1e76078eb1713}{rules}} +\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_power_set_afa542ecc31858c8644d1e76078eb1713}{rules}} \item size\+\_\+t \mbox{\hyperlink{class_power_set_a0d23e8e17d30ac0dcb740634bf817ac7}{N}} \item @@ -114,7 +114,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{PowerSet@{PowerSet}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{PowerSet()}{PowerSet()}\hspace{0.1cm}{\footnotesize\ttfamily [1/3]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::\mbox{\hyperlink{class_power_set}{Power\+Set}} (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_power_set}{Power\+Set}} (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -125,7 +125,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{PowerSet@{PowerSet}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{PowerSet()}{PowerSet()}\hspace{0.1cm}{\footnotesize\ttfamily [2/3]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::\mbox{\hyperlink{class_power_set}{Power\+Set}} (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{N\+\_\+, }\item[{size\+\_\+t}]{M\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_power_set}{Power\+Set}} (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{N\+\_\+, }\item[{size\+\_\+t}]{M\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -136,7 +136,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{PowerSet@{PowerSet}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{PowerSet()}{PowerSet()}\hspace{0.1cm}{\footnotesize\ttfamily [3/3]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type $>$ \\ -\mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::\mbox{\hyperlink{class_power_set}{Power\+Set}} (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{array }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_power_set}{Power\+Set}} (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{array }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -147,7 +147,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{````~PowerSet@{$\sim$PowerSet}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{$\sim$PowerSet()}{~PowerSet()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type $>$ \\ -\mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::$\sim$\mbox{\hyperlink{class_power_set}{Power\+Set}}\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::$\sim$\mbox{\hyperlink{class_power_set}{Power\+Set}}\hspace{0.3cm}{\ttfamily [inline]}} @@ -161,7 +161,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{add\_rule@{add\_rule}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_rule()}{add\_rule()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$}]{rule }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$}]{rule }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -172,7 +172,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{add\_rule@{add\_rule}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_rule()}{add\_rule()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$}]{count\+\_\+fun\+\_\+, }\item[{\mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}}]{data\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$}]{count\+\_\+fun\+\_\+, }\item[{Data\+\_\+\+Rule\+\_\+\+Type}]{data\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -183,7 +183,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{begin@{begin}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{begin()}{begin()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ Array\+\_\+\+Type $>$\+::iterator \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::begin (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +std\+::vector$<$ Array\+\_\+\+Type $>$\+::iterator \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::begin (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -194,7 +194,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{calc@{calc}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{calc()}{calc()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::calc\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::calc\hspace{0.3cm}{\ttfamily [inline]}} @@ -205,7 +205,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{end@{end}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{end()}{end()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ Array\+\_\+\+Type $>$\+::iterator \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::end (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +std\+::vector$<$ Array\+\_\+\+Type $>$\+::iterator \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::end (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -216,7 +216,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{get\_data@{get\_data}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_data()}{get\_data()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ Array\+\_\+\+Type $>$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::get\+\_\+data (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [inline]}} +std\+::vector$<$ Array\+\_\+\+Type $>$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::get\+\_\+data (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [inline]}} @@ -227,7 +227,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{get\_data\_ptr@{get\_data\_ptr}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_data\_ptr()}{get\_data\_ptr()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -const std\+::vector$<$ Array\+\_\+\+Type $>$$\ast$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::get\+\_\+data\+\_\+ptr (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [inline]}} +const std\+::vector$<$ Array\+\_\+\+Type $>$$\ast$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::get\+\_\+data\+\_\+ptr (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [inline]}} @@ -238,7 +238,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{init\_support@{init\_support}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{init\_support()}{init\_support()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::init\+\_\+support\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::init\+\_\+support\hspace{0.3cm}{\ttfamily [inline]}} @@ -249,7 +249,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{operator\mbox{[}\mbox{]}@{operator[]}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{operator[]()}{operator[]()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -const Array\+\_\+\+Type\& \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::operator\mbox{[}$\,$\mbox{]} (\begin{DoxyParamCaption}\item[{const size\+\_\+t \&}]{i }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [inline]}} +const Array\+\_\+\+Type\& \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::operator\mbox{[}$\,$\mbox{]} (\begin{DoxyParamCaption}\item[{const size\+\_\+t \&}]{i }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [inline]}} @@ -260,7 +260,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{reset@{reset}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{reset()}{reset()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::reset (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{N\+\_\+, }\item[{size\+\_\+t}]{M\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::reset (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{N\+\_\+, }\item[{size\+\_\+t}]{M\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -271,7 +271,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{size@{size}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{size()}{size()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -std\+::size\+\_\+t \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::size (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [noexcept]}} +std\+::size\+\_\+t \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::size (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [inline]}, {\ttfamily [noexcept]}} @@ -285,7 +285,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{coordinates\_free@{coordinates\_free}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{coordinates\_free}{coordinates\_free}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::coordinates\+\_\+free} +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::coordinates\+\_\+free} @@ -296,7 +296,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{coordinates\_locked@{coordinates\_locked}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{coordinates\_locked}{coordinates\_locked}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::coordinates\+\_\+locked} +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::coordinates\+\_\+locked} @@ -307,7 +307,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{data@{data}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{data}{data}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ Array\+\_\+\+Type $>$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::data} +std\+::vector$<$ Array\+\_\+\+Type $>$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::data} @@ -318,7 +318,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{EmptyArray@{EmptyArray}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{EmptyArray}{EmptyArray}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -Array\+\_\+\+Type \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::Empty\+Array} +Array\+\_\+\+Type \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::Empty\+Array} @@ -329,7 +329,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{M@{M}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{M}{M}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::M} +size\+\_\+t \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::M} @@ -340,7 +340,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{N@{N}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{N}{N}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::N} +size\+\_\+t \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::N} @@ -351,7 +351,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{n\_free@{n\_free}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{n\_free}{n\_free}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::n\+\_\+free} +size\+\_\+t \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::n\+\_\+free} @@ -362,7 +362,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{n\_locked@{n\_locked}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{n\_locked}{n\_locked}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::n\+\_\+locked} +size\+\_\+t \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::n\+\_\+locked} @@ -373,7 +373,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{rules@{rules}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{rules}{rules}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_rules}{Rules}}$<$Array\+\_\+\+Type,\mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}$>$$\ast$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::rules} +\mbox{\hyperlink{class_rules}{Rules}}$<$Array\+\_\+\+Type,Data\+\_\+\+Rule\+\_\+\+Type$>$$\ast$ \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::rules} @@ -384,7 +384,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename D \index{rules\_deleted@{rules\_deleted}!PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$@{PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}} \doxysubsubsection{\texorpdfstring{rules\_deleted}{rules\_deleted}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$$>$, typename Data\+\_\+\+Rule\+\_\+\+Type = bool$>$ \\ -bool \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$\+::rules\+\_\+deleted = false} +bool \mbox{\hyperlink{class_power_set}{Power\+Set}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$\+::rules\+\_\+deleted = false} diff --git a/latex/class_power_set__coll__graph.pdf b/latex/class_power_set__coll__graph.pdf index 147dab728..c24ffee08 100644 Binary files a/latex/class_power_set__coll__graph.pdf and b/latex/class_power_set__coll__graph.pdf differ diff --git a/latex/class_rule.tex b/latex/class_rule.tex index 60f5befbe..af00509e6 100644 --- a/latex/class_rule.tex +++ b/latex/class_rule.tex @@ -16,7 +16,7 @@ \item Data\+\_\+\+Type \& \mbox{\hyperlink{class_rule_a6b7d23cb3ac065b4fd4553108871be99}{D}} () \begin{DoxyCompactList}\small\item\em Read/\+Write access to the data. \end{DoxyCompactList}\item -bool \mbox{\hyperlink{class_rule_a192721b8f6f2c92753f44ac92703deca}{operator()}} (const Array\+\_\+\+Type \&\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) +bool \mbox{\hyperlink{class_rule_a192721b8f6f2c92753f44ac92703deca}{operator()}} (const Array\+\_\+\+Type \&a, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \item std\+::string \& \mbox{\hyperlink{class_rule_af394f21c78f5ba0a17e1d15715b2ebcf}{get\+\_\+name}} () \item @@ -42,7 +42,7 @@ \item \mbox{\hyperlink{class_rule_aef92e54d53dc77b5cad2f819b5f8f4bf}{Rule}} () \item -\mbox{\hyperlink{class_rule_a9d63bf11eccca0f49b05b039c61dbf59}{Rule}} (\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{model-meat_8hpp_ab8ef6c3e79d05d9438b72a41339d7842}{fun\+\_\+}}, Data\+\_\+\+Type dat\+\_\+, std\+::string \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\+\_\+}}=\char`\"{}\char`\"{}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_a85048b7e05646aea9e927425a9dc2656}{desc\+\_\+}}=\char`\"{}\char`\"{}) +\mbox{\hyperlink{class_rule_a9d63bf11eccca0f49b05b039c61dbf59}{Rule}} (\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a7b9c38a045f3121f0a943d5b980ec17f}{fun\+\_\+}}, Data\+\_\+\+Type dat\+\_\+, std\+::string \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\+\_\+}}=\char`\"{}\char`\"{}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_a85048b7e05646aea9e927425a9dc2656}{desc\+\_\+}}=\char`\"{}\char`\"{}) \end{DoxyCompactItemize} \end{Indent} diff --git a/latex/class_rules.tex b/latex/class_rules.tex index 17f4bd4ac..d987605d9 100644 --- a/latex/class_rules.tex +++ b/latex/class_rules.tex @@ -14,17 +14,17 @@ \item \mbox{\hyperlink{class_rules_aa78e9abf82ed8a0e4320d570191c8968}{Rules}} () \item -\mbox{\hyperlink{class_rules_a57f5ab44febba391b2a06d163d25b237}{Rules}} (const \mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \&\mbox{\hyperlink{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}{rules\+\_\+}}) +\mbox{\hyperlink{class_rules_a57f5ab44febba391b2a06d163d25b237}{Rules}} (const \mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \&rules\+\_\+) \item -\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{class_rules_ab87544febb8301772164570708bd708e}{operator=}} (const \mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \&\mbox{\hyperlink{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}{rules\+\_\+}}) +\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{class_rules_ab87544febb8301772164570708bd708e}{operator=}} (const \mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \&rules\+\_\+) \item \mbox{\hyperlink{class_rules_aa76d96c2316bc4a2a26bf4ec7b8d9463}{$\sim$\+Rules}} () \item size\+\_\+t \mbox{\hyperlink{class_rules_a3a7e889b85644a0109fa1bf94627dbcc}{size}} () const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} \item -bool \mbox{\hyperlink{class_rules_a8fc43f76a3004b88566abaa3ede58bb1}{operator()}} (const Array\+\_\+\+Type \&\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) +bool \mbox{\hyperlink{class_rules_a8fc43f76a3004b88566abaa3ede58bb1}{operator()}} (const Array\+\_\+\+Type \&a, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \begin{DoxyCompactList}\small\item\em Check whether a given cell is free or locked. \end{DoxyCompactList}\item -void \mbox{\hyperlink{class_rules_aa6e5d575803251a3e599677a395a2c1e}{get\+\_\+seq}} (const Array\+\_\+\+Type \&\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, std\+::vector$<$ size\+\_\+t $>$ $\ast$free, std\+::vector$<$ size\+\_\+t $>$ $\ast$locked=nullptr) +void \mbox{\hyperlink{class_rules_aa6e5d575803251a3e599677a395a2c1e}{get\+\_\+seq}} (const Array\+\_\+\+Type \&a, std\+::vector$<$ size\+\_\+t $>$ $\ast$free, std\+::vector$<$ size\+\_\+t $>$ $\ast$locked=nullptr) \begin{DoxyCompactList}\small\item\em Computes the sequence of free and locked cells in an \mbox{\hyperlink{class_b_array}{BArray}}. \end{DoxyCompactList}\item std\+::vector$<$ std\+::string $>$ \mbox{\hyperlink{class_rules_ab23bf6958f7bf6a869ef51122d82a624}{get\+\_\+names}} () const \item @@ -44,7 +44,7 @@ \item void \mbox{\hyperlink{class_rules_a93acdb3b29f83b97e0878977f208802f}{add\+\_\+rule}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ rule) \item -void \mbox{\hyperlink{class_rules_aabb924e02b27fb3e7768822c9b7bd629}{add\+\_\+rule}} (\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ rule\+\_\+, Data\+\_\+\+Type \mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\+\_\+}}=\char`\"{}\char`\"{}, std\+::string description\+\_\+=\char`\"{}\char`\"{}) +void \mbox{\hyperlink{class_rules_aabb924e02b27fb3e7768822c9b7bd629}{add\+\_\+rule}} (\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ rule\+\_\+, Data\+\_\+\+Type \mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}}, std\+::string \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\+\_\+}}=\char`\"{}\char`\"{}, std\+::string description\+\_\+=\char`\"{}\char`\"{}) \end{DoxyCompactItemize} \end{Indent} diff --git a/latex/class_stats_counter.tex b/latex/class_stats_counter.tex index 9675cacb0..526588320 100644 --- a/latex/class_stats_counter.tex +++ b/latex/class_stats_counter.tex @@ -26,9 +26,9 @@ \item void \mbox{\hyperlink{class_stats_counter_a1d66f7d7326cac60a46ee56a8eb0a497}{set\+\_\+counters}} (\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a06420c7858d72514761c1cca0654f9c0}{counters\+\_\+}}) \item -void \mbox{\hyperlink{class_stats_counter_a869321064dc050f055732f4ca8a901dd}{count\+\_\+init}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) +void \mbox{\hyperlink{class_stats_counter_a869321064dc050f055732f4ca8a901dd}{count\+\_\+init}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \begin{DoxyCompactList}\small\item\em \mbox{\hyperlink{class_counter}{Counter}} functions This function recurses through the entries of {\ttfamily Array} and at each step of adding a new cell it uses the functions to list the statistics. \end{DoxyCompactList}\item -void \mbox{\hyperlink{class_stats_counter_a1c69348f0014fda8b0dfcdbe10cd4c2a}{count\+\_\+current}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) +void \mbox{\hyperlink{class_stats_counter_a1c69348f0014fda8b0dfcdbe10cd4c2a}{count\+\_\+current}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \item std\+::vector$<$ double $>$ \mbox{\hyperlink{class_stats_counter_a83bd92031a1499109c98f238221cbd67}{count\+\_\+all}} () \item diff --git a/latex/class_support.tex b/latex/class_support.tex index 7b0c42b3b..8adc1ca1c 100644 --- a/latex/class_support.tex +++ b/latex/class_support.tex @@ -32,9 +32,9 @@ \item const \mbox{\hyperlink{class_freq_table}{Freq\+Table}}$<$ double $>$ \& \mbox{\hyperlink{class_support_ac19420a6296244d85274261f39e4ceae}{get\+\_\+data}} () const \item -\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ $\ast$ \mbox{\hyperlink{class_support_a9f2237792f9688bf86ae89454048db9a}{get\+\_\+counters}} () +\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_support_a9f2237792f9688bf86ae89454048db9a}{get\+\_\+counters}} () \begin{DoxyCompactList}\small\item\em Vector of couter functions. \end{DoxyCompactList}\item -\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$ \mbox{\hyperlink{class_support_a368a9c7797e1a76c3ee150070e66c212}{get\+\_\+rules}} () +\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_support_a368a9c7797e1a76c3ee150070e66c212}{get\+\_\+rules}} () \begin{DoxyCompactList}\small\item\em Vector of static rules (cells to iterate). \end{DoxyCompactList}\item \mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_support_a53daafcd49daac43c6e8841a8a17a05a}{get\+\_\+rules\+\_\+dyn}} () \begin{DoxyCompactList}\small\item\em Vector of dynamic rules (to include/exclude a realizaton). \end{DoxyCompactList}\end{DoxyCompactItemize} @@ -63,9 +63,9 @@ \end{DoxyParams} }\begin{DoxyCompactItemize} \item -void \mbox{\hyperlink{class_support_ab23c6d59f0b2fc3de6ca9a6a1c273fb0}{add\+\_\+counter}} (\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ \mbox{\hyperlink{statscounter-meat_8hpp_aeb989e52b3e937243d9b3ea2eee6ae8d}{f\+\_\+}}) +void \mbox{\hyperlink{class_support_ab23c6d59f0b2fc3de6ca9a6a1c273fb0}{add\+\_\+counter}} (\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ \mbox{\hyperlink{statscounter-meat_8hpp_aeb989e52b3e937243d9b3ea2eee6ae8d}{f\+\_\+}}) \item -void \mbox{\hyperlink{class_support_afc199188011973ef28bcf7dd1383743e}{set\+\_\+counters}} (\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a06420c7858d72514761c1cca0654f9c0}{counters\+\_\+}}) +void \mbox{\hyperlink{class_support_afc199188011973ef28bcf7dd1383743e}{set\+\_\+counters}} (\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a06420c7858d72514761c1cca0654f9c0}{counters\+\_\+}}) \end{DoxyCompactItemize} \end{Indent} \begin{Indent}\textbf{ Manage rules}\par @@ -78,19 +78,19 @@ \end{DoxyParams} }\begin{DoxyCompactItemize} \item -void \mbox{\hyperlink{class_support_a60a380edc9eeae8c7f88d06440116c48}{add\+\_\+rule}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_aeb989e52b3e937243d9b3ea2eee6ae8d}{f\+\_\+}}) +void \mbox{\hyperlink{class_support_a60a380edc9eeae8c7f88d06440116c48}{add\+\_\+rule}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_aeb989e52b3e937243d9b3ea2eee6ae8d}{f\+\_\+}}) \item -void \mbox{\hyperlink{class_support_a98650a3fd5c652922e00edc9163074e1}{add\+\_\+rule}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ \mbox{\hyperlink{statscounter-meat_8hpp_aeb989e52b3e937243d9b3ea2eee6ae8d}{f\+\_\+}}) +void \mbox{\hyperlink{class_support_a98650a3fd5c652922e00edc9163074e1}{add\+\_\+rule}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ \mbox{\hyperlink{statscounter-meat_8hpp_aeb989e52b3e937243d9b3ea2eee6ae8d}{f\+\_\+}}) \item -void \mbox{\hyperlink{class_support_af537df5404dcd989b9d606e4dae454e1}{set\+\_\+rules}} (\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$\mbox{\hyperlink{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}{rules\+\_\+}}) +void \mbox{\hyperlink{class_support_af537df5404dcd989b9d606e4dae454e1}{set\+\_\+rules}} (\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$rules\+\_\+) \item void \mbox{\hyperlink{class_support_a71e963ffbb78d36ea75f96afc6a477e3}{add\+\_\+rule\+\_\+dyn}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_aeb989e52b3e937243d9b3ea2eee6ae8d}{f\+\_\+}}) \item void \mbox{\hyperlink{class_support_a1e29c5a5a603a704cf08ca7094dff9d7}{add\+\_\+rule\+\_\+dyn}} (\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \mbox{\hyperlink{statscounter-meat_8hpp_aeb989e52b3e937243d9b3ea2eee6ae8d}{f\+\_\+}}) \item -void \mbox{\hyperlink{class_support_a9e296aa740b9aad3e7feef3981002c9e}{set\+\_\+rules\+\_\+dyn}} (\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$\mbox{\hyperlink{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}{rules\+\_\+}}) +void \mbox{\hyperlink{class_support_a9e296aa740b9aad3e7feef3981002c9e}{set\+\_\+rules\+\_\+dyn}} (\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$rules\+\_\+) \item -bool \mbox{\hyperlink{class_support_a0f3a2ffc8015a7967b5fc892cd2e3888}{eval\+\_\+rules\+\_\+dyn}} (const std\+::vector$<$ double $>$ \&counts, const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, const size\+\_\+t \&\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) +bool \mbox{\hyperlink{class_support_a0f3a2ffc8015a7967b5fc892cd2e3888}{eval\+\_\+rules\+\_\+dyn}} (const std\+::vector$<$ double $>$ \&counts, const size\+\_\+t \&\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, const size\+\_\+t \&\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \end{DoxyCompactItemize} \end{Indent} \doxysubsection*{Public Attributes} @@ -150,7 +150,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{Support@{Support}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{Support()}{Support()}\hspace{0.1cm}{\footnotesize\ttfamily [1/3]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_support}{Support}} (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_support}{Support}} (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -165,7 +165,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{Support@{Support}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{Support()}{Support()}\hspace{0.1cm}{\footnotesize\ttfamily [2/3]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_support}{Support}} (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{N\+\_\+, }\item[{size\+\_\+t}]{M\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_support}{Support}} (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{N\+\_\+, }\item[{size\+\_\+t}]{M\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -180,7 +180,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{Support@{Support}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{Support()}{Support()}\hspace{0.1cm}{\footnotesize\ttfamily [3/3]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_support}{Support}} (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::\mbox{\hyperlink{class_support}{Support}} (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -191,7 +191,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{````~Support@{$\sim$Support}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{$\sim$Support()}{~Support()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::$\sim$\mbox{\hyperlink{class_support}{Support}} (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::$\sim$\mbox{\hyperlink{class_support}{Support}} (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -205,7 +205,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{add\_counter@{add\_counter}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_counter()}{add\_counter()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+counter (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$}]{f\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+counter (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$}]{f\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -216,7 +216,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{add\_rule@{add\_rule}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_rule()}{add\_rule()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$}]{f\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$}]{f\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -227,7 +227,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{add\_rule@{add\_rule}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_rule()}{add\_rule()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$}]{f\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$}]{f\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -238,7 +238,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{add\_rule\_dyn@{add\_rule\_dyn}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_rule\_dyn()}{add\_rule\_dyn()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$}]{f\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$}]{f\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -249,7 +249,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{add\_rule\_dyn@{add\_rule\_dyn}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{add\_rule\_dyn()}{add\_rule\_dyn()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$}]{f\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::add\+\_\+rule\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$}]{f\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -260,7 +260,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{calc@{calc}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{calc()}{calc()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::calc (\begin{DoxyParamCaption}\item[{std\+::vector$<$ Array\+\_\+\+Type $>$ $\ast$}]{array\+\_\+bank = {\ttfamily nullptr}, }\item[{std\+::vector$<$ double $>$ $\ast$}]{stats\+\_\+bank = {\ttfamily nullptr}, }\item[{size\+\_\+t}]{max\+\_\+num\+\_\+elements\+\_\+ = {\ttfamily 0u} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::calc (\begin{DoxyParamCaption}\item[{std\+::vector$<$ Array\+\_\+\+Type $>$ $\ast$}]{array\+\_\+bank = {\ttfamily nullptr}, }\item[{std\+::vector$<$ double $>$ $\ast$}]{stats\+\_\+bank = {\ttfamily nullptr}, }\item[{size\+\_\+t}]{max\+\_\+num\+\_\+elements\+\_\+ = {\ttfamily 0u} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -284,7 +284,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{eval\_rules\_dyn@{eval\_rules\_dyn}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{eval\_rules\_dyn()}{eval\_rules\_dyn()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -bool \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::eval\+\_\+rules\+\_\+dyn (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{counts, }\item[{const size\+\_\+t \&}]{i, }\item[{const size\+\_\+t \&}]{j }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +bool \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::eval\+\_\+rules\+\_\+dyn (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ \&}]{counts, }\item[{const size\+\_\+t \&}]{i, }\item[{const size\+\_\+t \&}]{j }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -295,7 +295,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{get\_counters@{get\_counters}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_counters()}{get\_counters()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ $\ast$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+counters\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+counters\hspace{0.3cm}{\ttfamily [inline]}} @@ -310,7 +310,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{get\_counts@{get\_counts}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_counts()}{get\_counts()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -std\+::vector$<$ double $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+counts\hspace{0.3cm}{\ttfamily [inline]}} +std\+::vector$<$ double $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+counts\hspace{0.3cm}{\ttfamily [inline]}} @@ -321,7 +321,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{get\_current\_stats@{get\_current\_stats}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_current\_stats()}{get\_current\_stats()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -std\+::vector$<$ double $>$ $\ast$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+current\+\_\+stats\hspace{0.3cm}{\ttfamily [inline]}} +std\+::vector$<$ double $>$ $\ast$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+current\+\_\+stats\hspace{0.3cm}{\ttfamily [inline]}} @@ -336,7 +336,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{get\_data@{get\_data}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_data()}{get\_data()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -const \mbox{\hyperlink{class_freq_table}{Freq\+Table}}$<$ double $>$ \& \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+data\hspace{0.3cm}{\ttfamily [inline]}} +const \mbox{\hyperlink{class_freq_table}{Freq\+Table}}$<$ double $>$ \& \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+data\hspace{0.3cm}{\ttfamily [inline]}} @@ -347,7 +347,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{get\_rules@{get\_rules}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_rules()}{get\_rules()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+rules\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+rules\hspace{0.3cm}{\ttfamily [inline]}} @@ -362,7 +362,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{get\_rules\_dyn@{get\_rules\_dyn}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{get\_rules\_dyn()}{get\_rules\_dyn()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+rules\+\_\+dyn\hspace{0.3cm}{\ttfamily [inline]}} +\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::get\+\_\+rules\+\_\+dyn\hspace{0.3cm}{\ttfamily [inline]}} @@ -377,7 +377,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{init\_support@{init\_support}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{init\_support()}{init\_support()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::init\+\_\+support (\begin{DoxyParamCaption}\item[{std\+::vector$<$ Array\+\_\+\+Type $>$ $\ast$}]{array\+\_\+bank = {\ttfamily nullptr}, }\item[{std\+::vector$<$ double $>$ $\ast$}]{stats\+\_\+bank = {\ttfamily nullptr} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::init\+\_\+support (\begin{DoxyParamCaption}\item[{std\+::vector$<$ Array\+\_\+\+Type $>$ $\ast$}]{array\+\_\+bank = {\ttfamily nullptr}, }\item[{std\+::vector$<$ double $>$ $\ast$}]{stats\+\_\+bank = {\ttfamily nullptr} }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -388,7 +388,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{print@{print}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{print()}{print()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::print\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::print\hspace{0.3cm}{\ttfamily [inline]}} @@ -399,7 +399,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{reset\_array@{reset\_array}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{reset\_array()}{reset\_array()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::reset\+\_\+array\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::reset\+\_\+array\hspace{0.3cm}{\ttfamily [inline]}} @@ -410,7 +410,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{reset\_array@{reset\_array}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{reset\_array()}{reset\_array()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::reset\+\_\+array (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::reset\+\_\+array (\begin{DoxyParamCaption}\item[{const Array\+\_\+\+Type \&}]{Array\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -421,7 +421,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{set\_counters@{set\_counters}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{set\_counters()}{set\_counters()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+counters (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ $\ast$}]{counters\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+counters (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type $>$ $\ast$}]{counters\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -432,7 +432,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{set\_rules@{set\_rules}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{set\_rules()}{set\_rules()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+rules (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $>$ $\ast$}]{rules\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+rules (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type $>$ $\ast$}]{rules\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -443,7 +443,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{set\_rules\_dyn@{set\_rules\_dyn}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{set\_rules\_dyn()}{set\_rules\_dyn()}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Counter\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Type , typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ \\ -void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+rules\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$}]{rules\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} +void \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::set\+\_\+rules\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$ $\ast$}]{rules\+\_\+ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [inline]}} @@ -457,7 +457,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{change\_stats@{change\_stats}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{change\_stats}{change\_stats}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ double $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::change\+\_\+stats} +std\+::vector$<$ double $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::change\+\_\+stats} @@ -468,7 +468,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{coordiantes\_n\_free@{coordiantes\_n\_free}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{coordiantes\_n\_free}{coordiantes\_n\_free}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::coordiantes\+\_\+n\+\_\+free} +size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::coordiantes\+\_\+n\+\_\+free} @@ -479,7 +479,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{coordiantes\_n\_locked@{coordiantes\_n\_locked}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{coordiantes\_n\_locked}{coordiantes\_n\_locked}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::coordiantes\+\_\+n\+\_\+locked} +size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::coordiantes\+\_\+n\+\_\+locked} @@ -490,7 +490,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{coordinates\_free@{coordinates\_free}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{coordinates\_free}{coordinates\_free}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::coordinates\+\_\+free} +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::coordinates\+\_\+free} @@ -501,7 +501,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{coordinates\_locked@{coordinates\_locked}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{coordinates\_locked}{coordinates\_locked}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::coordinates\+\_\+locked} +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::coordinates\+\_\+locked} @@ -512,7 +512,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{current\_stats@{current\_stats}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{current\_stats}{current\_stats}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ double $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::current\+\_\+stats} +std\+::vector$<$ double $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::current\+\_\+stats} @@ -523,7 +523,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{delete\_counters@{delete\_counters}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{delete\_counters}{delete\_counters}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -bool \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+counters = true} +bool \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+counters = true} @@ -534,7 +534,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{delete\_rules@{delete\_rules}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{delete\_rules}{delete\_rules}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -bool \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+rules = true} +bool \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+rules = true} @@ -545,7 +545,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{delete\_rules\_dyn@{delete\_rules\_dyn}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{delete\_rules\_dyn}{delete\_rules\_dyn}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -bool \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+rules\+\_\+dyn = true} +bool \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::delete\+\_\+rules\+\_\+dyn = true} @@ -556,7 +556,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{hashes@{hashes}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{hashes}{hashes}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::hashes} +std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::hashes} @@ -567,7 +567,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{hashes\_initialized@{hashes\_initialized}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{hashes\_initialized}{hashes\_initialized}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -std\+::vector$<$ bool $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::hashes\+\_\+initialized} +std\+::vector$<$ bool $>$ \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::hashes\+\_\+initialized} @@ -578,7 +578,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{M@{M}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{M}{M}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::M} +size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::M} @@ -589,7 +589,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{max\_num\_elements@{max\_num\_elements}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{max\_num\_elements}{max\_num\_elements}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::max\+\_\+num\+\_\+elements = \mbox{\hyperlink{barry-configuration_8hpp_a4e96e4fea282b750197f31432abe3d97}{BARRY\+\_\+\+MAX\+\_\+\+NUM\+\_\+\+ELEMENTS}}} +size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::max\+\_\+num\+\_\+elements = \mbox{\hyperlink{barry-configuration_8hpp_a4e96e4fea282b750197f31432abe3d97}{BARRY\+\_\+\+MAX\+\_\+\+NUM\+\_\+\+ELEMENTS}}} @@ -600,7 +600,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{N@{N}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{N}{N}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::N} +size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::N} @@ -611,7 +611,7 @@ \subsubsection*{template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, \index{n\_counters@{n\_counters}!Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}} \doxysubsubsection{\texorpdfstring{n\_counters}{n\_counters}} {\footnotesize\ttfamily template$<$typename Array\+\_\+\+Type = BArray$<$bool, bool$>$, typename Data\+\_\+\+Counter\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Type = bool, typename Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type = bool$>$ \\ -size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}}, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::n\+\_\+counters} +size\+\_\+t \mbox{\hyperlink{class_support}{Support}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Counter\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Type, Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $>$\+::n\+\_\+counters} diff --git a/latex/counters-bones_8hpp__dep__incl.pdf b/latex/counters-bones_8hpp__dep__incl.pdf index 0bbea2eee..0a3425c68 100644 Binary files a/latex/counters-bones_8hpp__dep__incl.pdf and b/latex/counters-bones_8hpp__dep__incl.pdf differ diff --git a/latex/counters-meat_8hpp.tex b/latex/counters-meat_8hpp.tex index 663f96883..476cca2e6 100644 --- a/latex/counters-meat_8hpp.tex +++ b/latex/counters-meat_8hpp.tex @@ -15,7 +15,7 @@ \item \#define \mbox{\hyperlink{counters-meat_8hpp_a29970b98b610a5fd7de278bc2880cae7}{COUNTER\+\_\+\+TEMPLATE\+\_\+\+ARGS}}()~$<$typename Array\+\_\+\+Type, typename Data\+\_\+\+Type$>$ \item -\#define \mbox{\hyperlink{counters-meat_8hpp_a8840b9bea4ca8a4cea945955311a570e}{COUNTER\+\_\+\+TEMPLATE}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~ template \mbox{\hyperlink{counters-meat_8hpp_a29970b98b610a5fd7de278bc2880cae7}{COUNTER\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{counters-meat_8hpp_aa387f3508fdf8dce292c32102af2603c}{COUNTER\+\_\+\+TYPE}}()\+::b +\#define \mbox{\hyperlink{counters-meat_8hpp_a8840b9bea4ca8a4cea945955311a570e}{COUNTER\+\_\+\+TEMPLATE}}(a, b)~ template \mbox{\hyperlink{counters-meat_8hpp_a29970b98b610a5fd7de278bc2880cae7}{COUNTER\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{counters-meat_8hpp_aa387f3508fdf8dce292c32102af2603c}{COUNTER\+\_\+\+TYPE}}()\+::b \item \#define \mbox{\hyperlink{counters-meat_8hpp_a280a28059418e1ac77dfc3b16a435e7a}{TMP\+\_\+\+HASHER\+\_\+\+CALL}}~\mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$Array\+\_\+\+Type,Data\+\_\+\+Type$>$ \item @@ -23,7 +23,7 @@ \item \#define \mbox{\hyperlink{counters-meat_8hpp_a7729ab1d6cb3ac68f93ff37cbf0f1ec3}{COUNTERS\+\_\+\+TEMPLATE\+\_\+\+ARGS}}()~$<$typename Array\+\_\+\+Type, typename Data\+\_\+\+Type$>$ \item -\#define \mbox{\hyperlink{counters-meat_8hpp_afcfee941522ac2f3db2fbcd6f973cad2}{COUNTERS\+\_\+\+TEMPLATE}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~ template \mbox{\hyperlink{counters-meat_8hpp_a7729ab1d6cb3ac68f93ff37cbf0f1ec3}{COUNTERS\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{counters-meat_8hpp_ae27e6ee1784a946a418d6115a337f50c}{COUNTERS\+\_\+\+TYPE}}()\+::b +\#define \mbox{\hyperlink{counters-meat_8hpp_afcfee941522ac2f3db2fbcd6f973cad2}{COUNTERS\+\_\+\+TEMPLATE}}(a, b)~ template \mbox{\hyperlink{counters-meat_8hpp_a7729ab1d6cb3ac68f93ff37cbf0f1ec3}{COUNTERS\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{counters-meat_8hpp_ae27e6ee1784a946a418d6115a337f50c}{COUNTERS\+\_\+\+TYPE}}()\+::b \end{DoxyCompactItemize} \doxysubsection*{Functions} \begin{DoxyCompactItemize} @@ -50,11 +50,11 @@ \item \mbox{\hyperlink{counters-meat_8hpp_a4f4d29ea2c3f3dd911ee94420c97a44c}{COUNTER\+\_\+\+TEMPLATE}} (double, count)(Array\+\_\+\+Type \&Array \begin{DoxyCompactList}\small\item\em $<$ Move assignment \end{DoxyCompactList}\item -\mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} \mbox{\hyperlink{counters-meat_8hpp_ab77e9fc75f563d608979f664d3323a2f}{count\+\_\+fun}} (Array, \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) +\mbox{\hyperlink{statscounter-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}{return}} \mbox{\hyperlink{counters-meat_8hpp_ab77e9fc75f563d608979f664d3323a2f}{count\+\_\+fun}} (Array, \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) \item \mbox{\hyperlink{counters-meat_8hpp_aa500953db0e6cf26c9739fc9259c9e6b}{COUNTER\+\_\+\+TEMPLATE}} (double, init)(Array\+\_\+\+Type \&Array \item -\mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} \mbox{\hyperlink{counters-meat_8hpp_a1b41f5b3bcbc505baab9ad780eafb740}{init\+\_\+fun}} (Array, \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) +\mbox{\hyperlink{statscounter-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}{return}} \mbox{\hyperlink{counters-meat_8hpp_a1b41f5b3bcbc505baab9ad780eafb740}{init\+\_\+fun}} (Array, \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) \item \mbox{\hyperlink{counters-meat_8hpp_a054cd4bcee7091c631dec398c9e8f139}{COUNTER\+\_\+\+TEMPLATE}} (std\+::string, get\+\_\+name)() const \item @@ -90,7 +90,7 @@ \item \mbox{\hyperlink{counters-meat_8hpp_a3f0323418dba862809a97490ecfbc290}{if}} (\mbox{\hyperlink{counters-meat_8hpp_a51327367202f40175dea83db9095a0da}{hasher}}) \item -\mbox{\hyperlink{counters-meat_8hpp_aad00cb483160c346052d1ca08ec136ed}{if}} (\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{res.\+size}}()==0u) \mbox{\hyperlink{model-meat_8hpp_ac76d416dfa2e5dceea5f830850ea25ac}{res.\+push\+\_\+back}}(0.\+0) +\mbox{\hyperlink{counters-meat_8hpp_aad00cb483160c346052d1ca08ec136ed}{if}} (res.\+size()==0u) res.\+push\+\_\+back(0.\+0) \item \mbox{\hyperlink{counters-meat_8hpp_a83aee11478d5adcbf9d7cb99e8cc8a60}{COUNTERS\+\_\+\+TEMPLATE}} (void, add\+\_\+hash)(\mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type \end{DoxyCompactItemize} @@ -101,7 +101,7 @@ \item Data\+\_\+\+Type \&\&\mbox{\hyperlink{counters-meat_8hpp_a3119b2fa04b5a2a25b36f78264fdf274}{counter\+\_\+}} \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} \item -size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} = \mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}-\/$>$second +size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} \item size\+\_\+t size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} \item @@ -117,7 +117,7 @@ \item Data\+\_\+\+Type \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{counters-meat_8hpp_a7c4ea5d2468020b3872c9c6a4c3b0442}{hasher\+\_\+fun\+\_\+}} \item -Data\+\_\+\+Type \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ Data\+\_\+\+Type \mbox{\hyperlink{counters-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}} +Data\+\_\+\+Type \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ Data\+\_\+\+Type \mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\+\_\+}} \item Data\+\_\+\+Type \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ \mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, Data\+\_\+\+Type $>$ Data\+\_\+\+Type std\+::string \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\+\_\+}} \item @@ -125,7 +125,7 @@ \item bool \mbox{\hyperlink{counters-meat_8hpp_abf51d2d1d1db95f68ed44c896a4eec1c}{add\+\_\+dims}} \item -\mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} \mbox{\hyperlink{counters-meat_8hpp_a5e111f6687f261e4e28bd6528e7f5b48}{res}} +\mbox{\hyperlink{statscounter-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}{return}} \mbox{\hyperlink{counters-meat_8hpp_a5e111f6687f261e4e28bd6528e7f5b48}{res}} \item Data\+\_\+\+Type \mbox{\hyperlink{counters-meat_8hpp_a7b9c38a045f3121f0a943d5b980ec17f}{fun\+\_\+}} \end{DoxyCompactItemize} @@ -136,7 +136,7 @@ \index{counters-\/meat.hpp@{counters-\/meat.hpp}!COUNTER\_TEMPLATE@{COUNTER\_TEMPLATE}} \index{COUNTER\_TEMPLATE@{COUNTER\_TEMPLATE}!counters-\/meat.hpp@{counters-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{COUNTER\_TEMPLATE}{COUNTER\_TEMPLATE}} -{\footnotesize\ttfamily \#define COUNTER\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{counters-meat_8hpp_a29970b98b610a5fd7de278bc2880cae7}{COUNTER\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{counters-meat_8hpp_aa387f3508fdf8dce292c32102af2603c}{COUNTER\+\_\+\+TYPE}}()\+::b} +{\footnotesize\ttfamily \#define COUNTER\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{counters-meat_8hpp_a29970b98b610a5fd7de278bc2880cae7}{COUNTER\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{counters-meat_8hpp_aa387f3508fdf8dce292c32102af2603c}{COUNTER\+\_\+\+TYPE}}()\+::b} @@ -166,7 +166,7 @@ \index{counters-\/meat.hpp@{counters-\/meat.hpp}!COUNTERS\_TEMPLATE@{COUNTERS\_TEMPLATE}} \index{COUNTERS\_TEMPLATE@{COUNTERS\_TEMPLATE}!counters-\/meat.hpp@{counters-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{COUNTERS\_TEMPLATE}{COUNTERS\_TEMPLATE}} -{\footnotesize\ttfamily \#define COUNTERS\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{counters-meat_8hpp_a7729ab1d6cb3ac68f93ff37cbf0f1ec3}{COUNTERS\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{counters-meat_8hpp_ae27e6ee1784a946a418d6115a337f50c}{COUNTERS\+\_\+\+TYPE}}()\+::b} +{\footnotesize\ttfamily \#define COUNTERS\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{counters-meat_8hpp_a7729ab1d6cb3ac68f93ff37cbf0f1ec3}{COUNTERS\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{counters-meat_8hpp_ae27e6ee1784a946a418d6115a337f50c}{COUNTERS\+\_\+\+TYPE}}()\+::b} @@ -209,7 +209,7 @@ \index{counters-\/meat.hpp@{counters-\/meat.hpp}!count\_fun@{count\_fun}} \index{count\_fun@{count\_fun}!counters-\/meat.hpp@{counters-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{count\_fun()}{count\_fun()}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} count\+\_\+fun (\begin{DoxyParamCaption}\item[{Array}]{, }\item[{\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}}]{, }\item[{\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}}]{, }\item[{\mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}}]{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \mbox{\hyperlink{statscounter-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}{return}} count\+\_\+fun (\begin{DoxyParamCaption}\item[{Array}]{, }\item[{\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}}]{, }\item[{\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}}]{, }\item[{\mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}}]{ }\end{DoxyParamCaption})} \mbox{\Hypertarget{counters-meat_8hpp_a492798688a1a07a0e4859419c95f0d2f}\label{counters-meat_8hpp_a492798688a1a07a0e4859419c95f0d2f}} \index{counters-\/meat.hpp@{counters-\/meat.hpp}!COUNTER\_TEMPLATE@{COUNTER\_TEMPLATE}} @@ -447,7 +447,7 @@ \index{counters-\/meat.hpp@{counters-\/meat.hpp}!init\_fun@{init\_fun}} \index{init\_fun@{init\_fun}!counters-\/meat.hpp@{counters-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{init\_fun()}{init\_fun()}\hspace{0.1cm}{\footnotesize\ttfamily [1/3]}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} init\+\_\+fun (\begin{DoxyParamCaption}\item[{Array}]{, }\item[{\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}}]{, }\item[{\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}}]{, }\item[{\mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}}]{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \mbox{\hyperlink{statscounter-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}{return}} init\+\_\+fun (\begin{DoxyParamCaption}\item[{Array}]{, }\item[{\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}}]{, }\item[{\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}}]{, }\item[{\mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}}]{ }\end{DoxyParamCaption})} \mbox{\Hypertarget{counters-meat_8hpp_a4db74fa58e4a90b598e4a6f38811e78c}\label{counters-meat_8hpp_a4db74fa58e4a90b598e4a6f38811e78c}} \index{counters-\/meat.hpp@{counters-\/meat.hpp}!init\_fun@{init\_fun}} @@ -543,22 +543,12 @@ Definition at line 12 of file counters-\/meat.\+hpp. -\mbox{\Hypertarget{counters-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}\label{counters-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}} +\mbox{\Hypertarget{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}\label{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}} \index{counters-\/meat.hpp@{counters-\/meat.hpp}!data\_@{data\_}} \index{data\_@{data\_}!counters-\/meat.hpp@{counters-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{data\_}{data\_}} -{\footnotesize\ttfamily Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type data\+\_\+} +{\footnotesize\ttfamily Data\+\_\+\+Type \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$Array\+\_\+\+Type,Data\+\_\+\+Type$>$ \mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$Array\+\_\+\+Type,Data\+\_\+\+Type$>$ Data\+\_\+\+Type data\+\_\+} -{\bfseries Initial value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{\{} -\DoxyCodeLine{ } -\DoxyCodeLine{ \mbox{\hyperlink{model-meat_8hpp_aabe2227b11b09aa9567f8e6b282c3f57}{rules\_dyn}}-\/>add\_rule(} -\DoxyCodeLine{ \mbox{\hyperlink{model-meat_8hpp_ad3d009522a41d83535b5e753b0d8fbf8}{rule\_fun\_}},} -\DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\_}}} -\DoxyCodeLine{ )} - -\end{DoxyCode} Definition at line 182 of file counters-\/meat.\+hpp. @@ -577,7 +567,7 @@ \DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_a4c3b0c42e7e960fe3d847ee31a0adc7c}{count\_fun\_}},} \DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_a75f789c12bebd743c636550d811dc23e}{init\_fun\_}},} \DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_a7c4ea5d2468020b3872c9c6a4c3b0442}{hasher\_fun\_}},} -\DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\_}},} +\DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_af17c9c018d7997cb11aef6a4da2969a7}{data\_}},} \DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\_}},} \DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_a85048b7e05646aea9e927425a9dc2656}{desc\_}}} \DoxyCodeLine{ ))} @@ -630,11 +620,11 @@ Definition at line 181 of file counters-\/meat.\+hpp. -\mbox{\Hypertarget{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}\label{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}} +\mbox{\Hypertarget{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}\label{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}} \index{counters-\/meat.hpp@{counters-\/meat.hpp}!i@{i}} \index{i@{i}!counters-\/meat.hpp@{counters-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{i}{i}} -{\footnotesize\ttfamily const std\+::vector$<$ double $>$ size\+\_\+t i = \mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}-\/$>$second} +{\footnotesize\ttfamily size\+\_\+t i} @@ -715,7 +705,7 @@ \index{counters-\/meat.hpp@{counters-\/meat.hpp}!res@{res}} \index{res@{res}!counters-\/meat.hpp@{counters-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{res}{res}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} res} +{\footnotesize\ttfamily \mbox{\hyperlink{statscounter-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}{return}} res} diff --git a/latex/counters-meat_8hpp__dep__incl.pdf b/latex/counters-meat_8hpp__dep__incl.pdf index 06201f3e6..c60f1cb22 100644 Binary files a/latex/counters-meat_8hpp__dep__incl.pdf and b/latex/counters-meat_8hpp__dep__incl.pdf differ diff --git a/latex/defm-bones_8hpp__dep__incl.pdf b/latex/defm-bones_8hpp__dep__incl.pdf index 2327b512c..78f16d290 100644 Binary files a/latex/defm-bones_8hpp__dep__incl.pdf and b/latex/defm-bones_8hpp__dep__incl.pdf differ diff --git a/latex/defm-meat_8hpp.tex b/latex/defm-meat_8hpp.tex index 28dc3af49..77ad4ec39 100644 --- a/latex/defm-meat_8hpp.tex +++ b/latex/defm-meat_8hpp.tex @@ -11,9 +11,9 @@ \doxysubsection*{Macros} \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{defm-meat_8hpp_adfece462b32a0dea6b270efc91a7dd5c}{DEFM\+\_\+\+RANGES}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{defm-meat_8hpp_adfece462b32a0dea6b270efc91a7dd5c}{DEFM\+\_\+\+RANGES}}(a) \item -\#define \mbox{\hyperlink{defm-meat_8hpp_adf64635c1c487e9ea0eaad4fbffb34ac}{DEFM\+\_\+\+LOOP\+\_\+\+ARRAYS}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~ \mbox{\hyperlink{statscounter-meat_8hpp_ab4f852818ab1c2fe5cca0279a984d5dc}{for}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = 0u; \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} $<$ (nobs\+\_\+i -\/ M\+\_\+order); ++\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{defm-meat_8hpp_adf64635c1c487e9ea0eaad4fbffb34ac}{DEFM\+\_\+\+LOOP\+\_\+\+ARRAYS}}(a)~ \mbox{\hyperlink{statscounter-meat_8hpp_ab4f852818ab1c2fe5cca0279a984d5dc}{for}} (size\+\_\+t a = 0u; a $<$ (nobs\+\_\+i -\/ M\+\_\+order); ++a) \end{DoxyCompactItemize} \doxysubsection*{Functions} \begin{DoxyCompactItemize} @@ -27,7 +27,7 @@ \index{defm-\/meat.hpp@{defm-\/meat.hpp}!DEFM\_LOOP\_ARRAYS@{DEFM\_LOOP\_ARRAYS}} \index{DEFM\_LOOP\_ARRAYS@{DEFM\_LOOP\_ARRAYS}!defm-\/meat.hpp@{defm-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{DEFM\_LOOP\_ARRAYS}{DEFM\_LOOP\_ARRAYS}} -{\footnotesize\ttfamily \#define DEFM\+\_\+\+LOOP\+\_\+\+ARRAYS(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~ \mbox{\hyperlink{statscounter-meat_8hpp_ab4f852818ab1c2fe5cca0279a984d5dc}{for}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = 0u; \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} $<$ (nobs\+\_\+i -\/ M\+\_\+order); ++\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})} +{\footnotesize\ttfamily \#define DEFM\+\_\+\+LOOP\+\_\+\+ARRAYS(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~ \mbox{\hyperlink{statscounter-meat_8hpp_ab4f852818ab1c2fe5cca0279a984d5dc}{for}} (size\+\_\+t a = 0u; a $<$ (nobs\+\_\+i -\/ M\+\_\+order); ++a)} @@ -37,12 +37,12 @@ \index{defm-\/meat.hpp@{defm-\/meat.hpp}!DEFM\_RANGES@{DEFM\_RANGES}} \index{DEFM\_RANGES@{DEFM\_RANGES}!defm-\/meat.hpp@{defm-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{DEFM\_RANGES}{DEFM\_RANGES}} -{\footnotesize\ttfamily \#define DEFM\+\_\+\+RANGES(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define DEFM\+\_\+\+RANGES(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{ \textcolor{keywordtype}{size\_t} start\_i = start\_end[\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} * 2u];\(\backslash\)} -\DoxyCodeLine{ size\_t end\_i = start\_end[\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} * 2u + 1u];\(\backslash\)} +\DoxyCodeLine{ \textcolor{keywordtype}{size\_t} start\_i = start\_end[a * 2u];\(\backslash\)} +\DoxyCodeLine{ size\_t end\_i = start\_end[a * 2u + 1u];\(\backslash\)} \DoxyCodeLine{ size\_t nobs\_i = end\_i -\/ start\_i + 1u;} \end{DoxyCode} diff --git a/latex/defm-meat_8hpp__dep__incl.pdf b/latex/defm-meat_8hpp__dep__incl.pdf index 69e674a08..ad6afce43 100644 Binary files a/latex/defm-meat_8hpp__dep__incl.pdf and b/latex/defm-meat_8hpp__dep__incl.pdf differ diff --git a/latex/defm-types_8hpp__dep__incl.pdf b/latex/defm-types_8hpp__dep__incl.pdf index f1a292bf1..674558774 100644 Binary files a/latex/defm-types_8hpp__dep__incl.pdf and b/latex/defm-types_8hpp__dep__incl.pdf differ diff --git a/latex/defm_2counters_8hpp.tex b/latex/defm_2counters_8hpp.tex index db4133307..756559be3 100644 --- a/latex/defm_2counters_8hpp.tex +++ b/latex/defm_2counters_8hpp.tex @@ -20,26 +20,26 @@ \doxysubsection*{Macros} \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{group__counting_ga172b737bbafc10829969ae80428ae682}{MAKE\+\_\+\+DEFM\+\_\+\+HASHER}}(\mbox{\hyperlink{counters-meat_8hpp_a51327367202f40175dea83db9095a0da}{hasher}}, \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, cov) +\#define \mbox{\hyperlink{group__counting_ga172b737bbafc10829969ae80428ae682}{MAKE\+\_\+\+DEFM\+\_\+\+HASHER}}(\mbox{\hyperlink{counters-meat_8hpp_a51327367202f40175dea83db9095a0da}{hasher}}, a, cov) \item -\#define \mbox{\hyperlink{defm_2counters_8hpp_ac6f3765d01ec78962d3bacb6d9934331}{DEFM\+\_\+\+RULEDYN\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{defm_2counters_8hpp_ac6f3765d01ec78962d3bacb6d9934331}{DEFM\+\_\+\+RULEDYN\+\_\+\+LAMBDA}}(a) \item -\#define \mbox{\hyperlink{defm_2counters_8hpp_a7a02efb9a9ac7cb0f4b8659e2b2529e0}{UNI\+\_\+\+SUB}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{defm_2counters_8hpp_a7a02efb9a9ac7cb0f4b8659e2b2529e0}{UNI\+\_\+\+SUB}}(a) \end{DoxyCompactItemize} \begin{Indent}\textbf{ Macros for defining counters}\par \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{defm_2counters_8hpp_aceda72b2e1b110e80235df9dbac17351}{DEFM\+\_\+\+COUNTER}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~inline double (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) (const \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_d_e_f_m_counter_data}{DEFMCounter\+Data}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) +\#define \mbox{\hyperlink{defm_2counters_8hpp_aceda72b2e1b110e80235df9dbac17351}{DEFM\+\_\+\+COUNTER}}(a)~inline double (a) (const \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_d_e_f_m_counter_data}{DEFMCounter\+Data}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) \item -\#define \mbox{\hyperlink{defm_2counters_8hpp_a0de627ee2d314d645cf885c7cc0ee36b}{DEFM\+\_\+\+COUNTER\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{defm_2counters_8hpp_a0de627ee2d314d645cf885c7cc0ee36b}{DEFM\+\_\+\+COUNTER\+\_\+\+LAMBDA}}(a) \end{DoxyCompactItemize} \end{Indent} \begin{Indent}\textbf{ Macros for defining rules}\par \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{defm_2counters_8hpp_af210bb3f47af7995ff200264370d9db6}{DEFM\+\_\+\+RULE}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})~inline bool (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) (const \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) +\#define \mbox{\hyperlink{defm_2counters_8hpp_af210bb3f47af7995ff200264370d9db6}{DEFM\+\_\+\+RULE}}(a)~inline bool (a) (const \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) \item -\#define \mbox{\hyperlink{defm_2counters_8hpp_a94148d8866c1e18cbb02be5ba7d233ba}{DEFM\+\_\+\+RULE\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{defm_2counters_8hpp_a94148d8866c1e18cbb02be5ba7d233ba}{DEFM\+\_\+\+RULE\+\_\+\+LAMBDA}}(a) \end{DoxyCompactItemize} \end{Indent} \doxysubsection*{Functions} @@ -53,7 +53,7 @@ \begin{DoxyCompactList}\small\item\em Prevalence of ones. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counters-network_gad8c9e9b4e4a57e96cd604e8e4832a272}{counter\+\_\+transition\+\_\+formula}} (\mbox{\hyperlink{group__rules-phylo_ga5c89d811265cdc84066476226ea138a8}{DEFMCounters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::string formula, size\+\_\+t m\+\_\+order, size\+\_\+t n\+\_\+y, int covar\+\_\+index=-\/1, std\+::string vname=\char`\"{}\char`\"{}, const std\+::vector$<$ std\+::string $>$ $\ast$x\+\_\+names=nullptr, const std\+::vector$<$ std\+::string $>$ $\ast$y\+\_\+names=nullptr) \begin{DoxyCompactList}\small\item\em Prevalence of ones. \end{DoxyCompactList}\item -void \mbox{\hyperlink{group__counters-network_ga74d93c11efb7162666fa2fe461e0d752}{counter\+\_\+fixed\+\_\+effect}} (\mbox{\hyperlink{group__rules-phylo_ga5c89d811265cdc84066476226ea138a8}{DEFMCounters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, int covar\+\_\+index, double \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}}, std\+::string vname=\char`\"{}\char`\"{}, const std\+::vector$<$ std\+::string $>$ $\ast$x\+\_\+names=nullptr) +void \mbox{\hyperlink{group__counters-network_ga74d93c11efb7162666fa2fe461e0d752}{counter\+\_\+fixed\+\_\+effect}} (\mbox{\hyperlink{group__rules-phylo_ga5c89d811265cdc84066476226ea138a8}{DEFMCounters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, int covar\+\_\+index, double k, std\+::string vname=\char`\"{}\char`\"{}, const std\+::vector$<$ std\+::string $>$ $\ast$x\+\_\+names=nullptr) \begin{DoxyCompactList}\small\item\em Prevalence of ones. \end{DoxyCompactList}\end{DoxyCompactItemize} \begin{Indent}\textbf{ Returns true if the cell is free}\par {\em @@ -63,7 +63,7 @@ \end{DoxyParams} }\begin{DoxyCompactItemize} \item -void \mbox{\hyperlink{group__counters-network_ga31452452bf9dad7f6c5767dcabfb4dbe}{rules\+\_\+markov\+\_\+fixed}} (\mbox{\hyperlink{group__rules-phylo_gaae5b274ab680fe97a6da3615ad08b45b}{DEFMRules}} $\ast$\mbox{\hyperlink{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}{rules}}, size\+\_\+t markov\+\_\+order) +void \mbox{\hyperlink{group__counters-network_ga31452452bf9dad7f6c5767dcabfb4dbe}{rules\+\_\+markov\+\_\+fixed}} (\mbox{\hyperlink{group__rules-phylo_gaae5b274ab680fe97a6da3615ad08b45b}{DEFMRules}} $\ast$rules, size\+\_\+t markov\+\_\+order) \begin{DoxyCompactList}\small\item\em Number of edges. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counters-network_gad1d106d42f394a9f6272d7bdf043e127}{rules\+\_\+dont\+\_\+become\+\_\+zero}} (\mbox{\hyperlink{group__rules-phylo_gaec94c2fbe37383fd6695bc2d60863077}{DEFMSupport}} $\ast$support, std\+::vector$<$ size\+\_\+t $>$ ids) \begin{DoxyCompactList}\small\item\em Blocks switching a one to zero. \end{DoxyCompactList}\end{DoxyCompactItemize} @@ -75,7 +75,7 @@ \index{counters.hpp@{counters.hpp}!DEFM\_COUNTER@{DEFM\_COUNTER}} \index{DEFM\_COUNTER@{DEFM\_COUNTER}!counters.hpp@{counters.hpp}} \doxysubsubsection{\texorpdfstring{DEFM\_COUNTER}{DEFM\_COUNTER}} -{\footnotesize\ttfamily \#define DEFM\+\_\+\+COUNTER(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~inline double (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) (const \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_d_e_f_m_counter_data}{DEFMCounter\+Data}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +{\footnotesize\ttfamily \#define DEFM\+\_\+\+COUNTER(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~inline double (a) (const \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_d_e_f_m_counter_data}{DEFMCounter\+Data}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} Function for definition of a network counter function @@ -85,12 +85,12 @@ \index{counters.hpp@{counters.hpp}!DEFM\_COUNTER\_LAMBDA@{DEFM\_COUNTER\_LAMBDA}} \index{DEFM\_COUNTER\_LAMBDA@{DEFM\_COUNTER\_LAMBDA}!counters.hpp@{counters.hpp}} \doxysubsubsection{\texorpdfstring{DEFM\_COUNTER\_LAMBDA}{DEFM\_COUNTER\_LAMBDA}} -{\footnotesize\ttfamily \#define DEFM\+\_\+\+COUNTER\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define DEFM\+\_\+\+COUNTER\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{barry::Counter\_fun\_type \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = \(\backslash\)} -\DoxyCodeLine{ [](\textcolor{keyword}{const} \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_d_e_f_m_counter_data}{DEFMCounterData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) -\/> double} +\DoxyCodeLine{barry::Counter\_fun\_type a = \(\backslash\)} +\DoxyCodeLine{ [](\textcolor{keyword}{const} \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_d_e_f_m_counter_data}{DEFMCounterData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) -\/> double} \end{DoxyCode} Lambda function for definition of a network counter function @@ -101,7 +101,7 @@ \index{counters.hpp@{counters.hpp}!DEFM\_RULE@{DEFM\_RULE}} \index{DEFM\_RULE@{DEFM\_RULE}!counters.hpp@{counters.hpp}} \doxysubsubsection{\texorpdfstring{DEFM\_RULE}{DEFM\_RULE}} -{\footnotesize\ttfamily \#define DEFM\+\_\+\+RULE(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})~inline bool (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) (const \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +{\footnotesize\ttfamily \#define DEFM\+\_\+\+RULE(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})~inline bool (a) (const \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, bool \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} Function for definition of a network counter function @@ -111,12 +111,12 @@ \index{counters.hpp@{counters.hpp}!DEFM\_RULE\_LAMBDA@{DEFM\_RULE\_LAMBDA}} \index{DEFM\_RULE\_LAMBDA@{DEFM\_RULE\_LAMBDA}!counters.hpp@{counters.hpp}} \doxysubsubsection{\texorpdfstring{DEFM\_RULE\_LAMBDA}{DEFM\_RULE\_LAMBDA}} -{\footnotesize\ttfamily \#define DEFM\+\_\+\+RULE\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define DEFM\+\_\+\+RULE\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{barry::Rule\_fun\_type \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = \(\backslash\)} -\DoxyCodeLine{[](\textcolor{keyword}{const} \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_d_e_f_m_rule_data}{DEFMRuleData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) -\/> bool} +\DoxyCodeLine{barry::Rule\_fun\_type a = \(\backslash\)} +\DoxyCodeLine{[](\textcolor{keyword}{const} \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_d_e_f_m_rule_data}{DEFMRuleData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) -\/> bool} \end{DoxyCode} Lambda function for definition of a network counter function @@ -127,12 +127,12 @@ \index{counters.hpp@{counters.hpp}!DEFM\_RULEDYN\_LAMBDA@{DEFM\_RULEDYN\_LAMBDA}} \index{DEFM\_RULEDYN\_LAMBDA@{DEFM\_RULEDYN\_LAMBDA}!counters.hpp@{counters.hpp}} \doxysubsubsection{\texorpdfstring{DEFM\_RULEDYN\_LAMBDA}{DEFM\_RULEDYN\_LAMBDA}} -{\footnotesize\ttfamily \#define DEFM\+\_\+\+RULEDYN\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define DEFM\+\_\+\+RULEDYN\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{barry::Rule\_fun\_type \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = \(\backslash\)} -\DoxyCodeLine{[](\textcolor{keyword}{const} \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_d_e_f_m_rule_dyn_data}{DEFMRuleDynData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) -\/> bool} +\DoxyCodeLine{barry::Rule\_fun\_type a = \(\backslash\)} +\DoxyCodeLine{[](\textcolor{keyword}{const} \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_d_e_f_m_rule_dyn_data}{DEFMRuleDynData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}}) -\/> bool} \end{DoxyCode} Lambda function for definition of a network counter function @@ -143,20 +143,20 @@ \index{counters.hpp@{counters.hpp}!UNI\_SUB@{UNI\_SUB}} \index{UNI\_SUB@{UNI\_SUB}!counters.hpp@{counters.hpp}} \doxysubsubsection{\texorpdfstring{UNI\_SUB}{UNI\_SUB}} -{\footnotesize\ttfamily \#define UNI\+\_\+\+SUB(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define UNI\+\_\+\+SUB(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} \DoxyCodeLine{ (\(\backslash\)} -\DoxyCodeLine{ ((\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) == 0) ? u8\textcolor{stringliteral}{"{}\(\backslash\)u2080"{}} : (\(\backslash\)} -\DoxyCodeLine{ ((\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) == 1) ? u8\textcolor{stringliteral}{"{}\(\backslash\)u2081"{}} : (\(\backslash\)} -\DoxyCodeLine{ ((\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) == 2) ? u8\textcolor{stringliteral}{"{}\(\backslash\)u2082"{}} : (\(\backslash\)} -\DoxyCodeLine{ ((\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) == 3) ? u8\textcolor{stringliteral}{"{}\(\backslash\)u2083"{}} : (\(\backslash\)} -\DoxyCodeLine{ ((\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) == 4) ? 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differ diff --git a/latex/freqtable_8hpp__dep__incl.pdf b/latex/freqtable_8hpp__dep__incl.pdf index ab94045c7..0dd89f2e7 100644 Binary files a/latex/freqtable_8hpp__dep__incl.pdf and b/latex/freqtable_8hpp__dep__incl.pdf differ diff --git a/latex/geese-bones_8hpp.tex b/latex/geese-bones_8hpp.tex index 324e04a72..2ca241f86 100644 --- a/latex/geese-bones_8hpp.tex +++ b/latex/geese-bones_8hpp.tex @@ -27,7 +27,7 @@ \item std\+::vector$<$ double $>$ \mbox{\hyperlink{geese-bones_8hpp_a710215a1e2035a2d367c731229afed19}{keygen\+\_\+full}} (const \mbox{\hyperlink{geese-types_8hpp_a3f0cae5b6ac5c728612da24e8aa3b5f6}{Phylo\+Array}} \&array, const \mbox{\hyperlink{class_phylo_counter_data}{Phylo\+Counter\+Data}} $\ast$d) \item -bool \mbox{\hyperlink{geese-bones_8hpp_ae69f7c755cf5aa080b10d659c439c70d}{vec\+\_\+diff}} (const std\+::vector$<$ size\+\_\+t $>$ \&s, const std\+::vector$<$ size\+\_\+t $>$ \&\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +bool \mbox{\hyperlink{geese-bones_8hpp_ae69f7c755cf5aa080b10d659c439c70d}{vec\+\_\+diff}} (const std\+::vector$<$ size\+\_\+t $>$ \&s, const std\+::vector$<$ size\+\_\+t $>$ \&a) \end{DoxyCompactItemize} diff --git a/latex/geese-bones_8hpp__dep__incl.pdf b/latex/geese-bones_8hpp__dep__incl.pdf index fb600eba6..8a8153b57 100644 Binary files a/latex/geese-bones_8hpp__dep__incl.pdf and b/latex/geese-bones_8hpp__dep__incl.pdf differ diff --git a/latex/geese-meat-constructors_8hpp__dep__incl.pdf b/latex/geese-meat-constructors_8hpp__dep__incl.pdf index a477d0dd7..34f89dd3c 100644 Binary files a/latex/geese-meat-constructors_8hpp__dep__incl.pdf and b/latex/geese-meat-constructors_8hpp__dep__incl.pdf differ diff --git a/latex/geese-meat-likelihood_8hpp__dep__incl.pdf b/latex/geese-meat-likelihood_8hpp__dep__incl.pdf index a0424ecb1..0ffeac23f 100644 Binary files a/latex/geese-meat-likelihood_8hpp__dep__incl.pdf and b/latex/geese-meat-likelihood_8hpp__dep__incl.pdf differ diff --git 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646db8447..b9d94c9d8 100644 Binary files a/latex/geese-node-bones_8hpp__dep__incl.pdf and b/latex/geese-node-bones_8hpp__dep__incl.pdf differ diff --git a/latex/geese-types_8hpp.tex b/latex/geese-types_8hpp.tex index 97bd4a2fd..43d61ab7f 100644 --- a/latex/geese-types_8hpp.tex +++ b/latex/geese-types_8hpp.tex @@ -20,7 +20,7 @@ \doxysubsection*{Macros} \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{geese-types_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~(b)$\ast$N + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{geese-types_8hpp_abf33b097799b4bfe44ec4477c592b0b9}{POS}}(a, b)~(b)$\ast$N + (a) \end{DoxyCompactItemize} \doxysubsection*{Typedefs} \begin{Indent}\textbf{ Convenient typedefs for Node objects.}\par @@ -58,7 +58,7 @@ \index{geese-\/types.hpp@{geese-\/types.hpp}!POS@{POS}} \index{POS@{POS}!geese-\/types.hpp@{geese-\/types.hpp}} \doxysubsubsection{\texorpdfstring{POS}{POS}} -{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~(b)$\ast$N + (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}})} +{\footnotesize\ttfamily \#define POS(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~(b)$\ast$N + (a)} diff --git a/latex/geese-types_8hpp__dep__incl.pdf b/latex/geese-types_8hpp__dep__incl.pdf index 553fc3b33..720f3bfa1 100644 Binary files a/latex/geese-types_8hpp__dep__incl.pdf and b/latex/geese-types_8hpp__dep__incl.pdf differ diff --git a/latex/geese_2counters_8hpp.tex b/latex/geese_2counters_8hpp.tex index 4669db39a..2579f4971 100644 --- a/latex/geese_2counters_8hpp.tex +++ b/latex/geese_2counters_8hpp.tex @@ -27,9 +27,9 @@ \item \#define \mbox{\hyperlink{group__counting_ga6c20892d837efbb7da5227af44feca3c}{IF\+\_\+\+NOTMATCHES}}() \item -\#define \mbox{\hyperlink{group__counting_gac89fe9750bd62a338930ea730d23d0d2}{PHYLO\+\_\+\+COUNTER\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{group__counting_gac89fe9750bd62a338930ea730d23d0d2}{PHYLO\+\_\+\+COUNTER\+\_\+\+LAMBDA}}(a) \begin{DoxyCompactList}\small\item\em Extension of a simple counter. \end{DoxyCompactList}\item -\#define \mbox{\hyperlink{group__counting_ga4a7a35cddb61f74a0ec3cb3893cf78b1}{PHYLO\+\_\+\+RULE\+\_\+\+DYN\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{group__counting_ga4a7a35cddb61f74a0ec3cb3893cf78b1}{PHYLO\+\_\+\+RULE\+\_\+\+DYN\+\_\+\+LAMBDA}}(a) \item \#define \mbox{\hyperlink{group__counting_ga81c4979894537f31d3ecc06c5f6dd504}{PHYLO\+\_\+\+CHECK\+\_\+\+MISSING}}() \item @@ -39,7 +39,7 @@ \begin{DoxyCompactList}\small\item\em Overall functional gains. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_ga8972c27d6e3dfa3fb980afce91dbd582}{counter\+\_\+gains}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::vector$<$ size\+\_\+t $>$ nfun, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Functional gains for a specific function ({\ttfamily nfun}). \end{DoxyCompactList}\item -void \mbox{\hyperlink{group__counting_gac5bf2141645db356fbd1333d56ce8444}{counter\+\_\+gains\+\_\+k\+\_\+offspring}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::vector$<$ size\+\_\+t $>$ nfun, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}}=1u, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) +void \mbox{\hyperlink{group__counting_gac5bf2141645db356fbd1333d56ce8444}{counter\+\_\+gains\+\_\+k\+\_\+offspring}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::vector$<$ size\+\_\+t $>$ nfun, size\+\_\+t k=1u, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em k genes gain function nfun \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_ga347aabd9065d9ff8352e58fb282b8fd2}{counter\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Keeps track of how many genes are changing (either 0, 1, or 2 if dealing with regular trees.) \end{DoxyCompactList}\item @@ -69,7 +69,7 @@ \begin{DoxyCompactList}\small\item\em Total number of neofunctionalization events. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_ga39768a8cbb21e6b775c382568a4f98f9}{counter\+\_\+co\+\_\+opt}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t nfunA, size\+\_\+t nfunB, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Function co-\/opting. \end{DoxyCompactList}\item -void \mbox{\hyperlink{group__counting_ga1f7678ddbb9f9084cb5fe1c79f205558}{counter\+\_\+k\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}}, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) +void \mbox{\hyperlink{group__counting_ga1f7678ddbb9f9084cb5fe1c79f205558}{counter\+\_\+k\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t k, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Indicator function. Equals to one if $k$ genes changed and zero otherwise. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_gaa6fbd08ef13dbe4b29a68e9200113feb}{counter\+\_\+less\+\_\+than\+\_\+p\+\_\+prop\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, double p, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Indicator function. Equals to one if $k$ genes changed and zero otherwise. \end{DoxyCompactList}\item diff --git a/latex/geese_2counters_8hpp__dep__incl.pdf b/latex/geese_2counters_8hpp__dep__incl.pdf index 112377faf..1d720b20d 100644 Binary files a/latex/geese_2counters_8hpp__dep__incl.pdf and b/latex/geese_2counters_8hpp__dep__incl.pdf differ diff --git a/latex/geese_8hpp__incl.pdf b/latex/geese_8hpp__incl.pdf index 2363058df..b409dc592 100644 Binary files a/latex/geese_8hpp__incl.pdf and b/latex/geese_8hpp__incl.pdf differ diff --git a/latex/group__counters-network.tex b/latex/group__counters-network.tex index 8881b3ced..f75dbe2b3 100644 --- a/latex/group__counters-network.tex +++ b/latex/group__counters-network.tex @@ -74,7 +74,7 @@ \begin{DoxyCompactList}\small\item\em Prevalence of ones. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counters-network_gad8c9e9b4e4a57e96cd604e8e4832a272}{counter\+\_\+transition\+\_\+formula}} (\mbox{\hyperlink{group__rules-phylo_ga5c89d811265cdc84066476226ea138a8}{DEFMCounters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::string formula, size\+\_\+t m\+\_\+order, size\+\_\+t n\+\_\+y, int covar\+\_\+index=-\/1, std\+::string vname=\char`\"{}\char`\"{}, const std\+::vector$<$ std\+::string $>$ $\ast$x\+\_\+names=nullptr, const std\+::vector$<$ std\+::string $>$ $\ast$y\+\_\+names=nullptr) \begin{DoxyCompactList}\small\item\em Prevalence of ones. \end{DoxyCompactList}\item -void \mbox{\hyperlink{group__counters-network_ga74d93c11efb7162666fa2fe461e0d752}{counter\+\_\+fixed\+\_\+effect}} (\mbox{\hyperlink{group__rules-phylo_ga5c89d811265cdc84066476226ea138a8}{DEFMCounters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, int covar\+\_\+index, double \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}}, std\+::string vname=\char`\"{}\char`\"{}, const std\+::vector$<$ std\+::string $>$ $\ast$x\+\_\+names=nullptr) +void \mbox{\hyperlink{group__counters-network_ga74d93c11efb7162666fa2fe461e0d752}{counter\+\_\+fixed\+\_\+effect}} (\mbox{\hyperlink{group__rules-phylo_ga5c89d811265cdc84066476226ea138a8}{DEFMCounters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, int covar\+\_\+index, double k, std\+::string vname=\char`\"{}\char`\"{}, const std\+::vector$<$ std\+::string $>$ $\ast$x\+\_\+names=nullptr) \begin{DoxyCompactList}\small\item\em Prevalence of ones. \end{DoxyCompactList}\end{DoxyCompactItemize} \doxysubsection*{Returns true if the cell is free} \label{_amgrpe50199167161edbdfb9bdf89ca7d6064}% @@ -85,7 +85,7 @@ \end{DoxyParams} \begin{DoxyCompactItemize} \item -void \mbox{\hyperlink{group__counters-network_ga31452452bf9dad7f6c5767dcabfb4dbe}{rules\+\_\+markov\+\_\+fixed}} (\mbox{\hyperlink{group__rules-phylo_gaae5b274ab680fe97a6da3615ad08b45b}{DEFMRules}} $\ast$\mbox{\hyperlink{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}{rules}}, size\+\_\+t markov\+\_\+order) +void \mbox{\hyperlink{group__counters-network_ga31452452bf9dad7f6c5767dcabfb4dbe}{rules\+\_\+markov\+\_\+fixed}} (\mbox{\hyperlink{group__rules-phylo_gaae5b274ab680fe97a6da3615ad08b45b}{DEFMRules}} $\ast$rules, size\+\_\+t markov\+\_\+order) \begin{DoxyCompactList}\small\item\em Number of edges. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counters-network_gad1d106d42f394a9f6272d7bdf043e127}{rules\+\_\+dont\+\_\+become\+\_\+zero}} (\mbox{\hyperlink{group__rules-phylo_gaec94c2fbe37383fd6695bc2d60863077}{DEFMSupport}} $\ast$support, std\+::vector$<$ size\+\_\+t $>$ ids) \begin{DoxyCompactList}\small\item\em Blocks switching a one to zero. \end{DoxyCompactList}\end{DoxyCompactItemize} diff --git a/latex/group__counters-phylo.pdf b/latex/group__counters-phylo.pdf index ce33dc111..b5dd51391 100644 Binary files a/latex/group__counters-phylo.pdf and b/latex/group__counters-phylo.pdf differ diff --git a/latex/group__counters-phylo.tex b/latex/group__counters-phylo.tex index d1a85069a..9d9e41081 100644 --- a/latex/group__counters-phylo.tex +++ b/latex/group__counters-phylo.tex @@ -24,7 +24,7 @@ \begin{DoxyCompactList}\small\item\em Overall functional gains. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_ga8972c27d6e3dfa3fb980afce91dbd582}{counter\+\_\+gains}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::vector$<$ size\+\_\+t $>$ nfun, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Functional gains for a specific function ({\ttfamily nfun}). \end{DoxyCompactList}\item -void \mbox{\hyperlink{group__counting_gac5bf2141645db356fbd1333d56ce8444}{counter\+\_\+gains\+\_\+k\+\_\+offspring}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::vector$<$ size\+\_\+t $>$ nfun, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}}=1u, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) +void \mbox{\hyperlink{group__counting_gac5bf2141645db356fbd1333d56ce8444}{counter\+\_\+gains\+\_\+k\+\_\+offspring}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::vector$<$ size\+\_\+t $>$ nfun, size\+\_\+t k=1u, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em k genes gain function nfun \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_ga347aabd9065d9ff8352e58fb282b8fd2}{counter\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Keeps track of how many genes are changing (either 0, 1, or 2 if dealing with regular trees.) \end{DoxyCompactList}\item @@ -54,7 +54,7 @@ \begin{DoxyCompactList}\small\item\em Total number of neofunctionalization events. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_ga39768a8cbb21e6b775c382568a4f98f9}{counter\+\_\+co\+\_\+opt}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t nfunA, size\+\_\+t nfunB, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Function co-\/opting. \end{DoxyCompactList}\item -void \mbox{\hyperlink{group__counting_ga1f7678ddbb9f9084cb5fe1c79f205558}{counter\+\_\+k\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}}, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) +void \mbox{\hyperlink{group__counting_ga1f7678ddbb9f9084cb5fe1c79f205558}{counter\+\_\+k\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t k, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Indicator function. Equals to one if $k$ genes changed and zero otherwise. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_gaa6fbd08ef13dbe4b29a68e9200113feb}{counter\+\_\+less\+\_\+than\+\_\+p\+\_\+prop\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, double p, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Indicator function. Equals to one if $k$ genes changed and zero otherwise. \end{DoxyCompactList}\item diff --git a/latex/group__counting.tex b/latex/group__counting.tex index 923e880c6..1516c645c 100644 --- a/latex/group__counting.tex +++ b/latex/group__counting.tex @@ -10,7 +10,7 @@ \doxysubsection*{Macros} \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{group__counting_ga172b737bbafc10829969ae80428ae682}{MAKE\+\_\+\+DEFM\+\_\+\+HASHER}}(\mbox{\hyperlink{counters-meat_8hpp_a51327367202f40175dea83db9095a0da}{hasher}}, \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, cov) +\#define \mbox{\hyperlink{group__counting_ga172b737bbafc10829969ae80428ae682}{MAKE\+\_\+\+DEFM\+\_\+\+HASHER}}(\mbox{\hyperlink{counters-meat_8hpp_a51327367202f40175dea83db9095a0da}{hasher}}, a, cov) \end{DoxyCompactItemize} \begin{DoxyCompactItemize} \item @@ -26,9 +26,9 @@ \item \#define \mbox{\hyperlink{group__counting_ga6c20892d837efbb7da5227af44feca3c}{IF\+\_\+\+NOTMATCHES}}() \item -\#define \mbox{\hyperlink{group__counting_gac89fe9750bd62a338930ea730d23d0d2}{PHYLO\+\_\+\+COUNTER\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{group__counting_gac89fe9750bd62a338930ea730d23d0d2}{PHYLO\+\_\+\+COUNTER\+\_\+\+LAMBDA}}(a) \begin{DoxyCompactList}\small\item\em Extension of a simple counter. \end{DoxyCompactList}\item -\#define \mbox{\hyperlink{group__counting_ga4a7a35cddb61f74a0ec3cb3893cf78b1}{PHYLO\+\_\+\+RULE\+\_\+\+DYN\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{group__counting_ga4a7a35cddb61f74a0ec3cb3893cf78b1}{PHYLO\+\_\+\+RULE\+\_\+\+DYN\+\_\+\+LAMBDA}}(a) \item \#define \mbox{\hyperlink{group__counting_ga81c4979894537f31d3ecc06c5f6dd504}{PHYLO\+\_\+\+CHECK\+\_\+\+MISSING}}() \item @@ -38,7 +38,7 @@ \begin{DoxyCompactList}\small\item\em Overall functional gains. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_ga8972c27d6e3dfa3fb980afce91dbd582}{counter\+\_\+gains}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::vector$<$ size\+\_\+t $>$ nfun, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Functional gains for a specific function ({\ttfamily nfun}). \end{DoxyCompactList}\item -void \mbox{\hyperlink{group__counting_gac5bf2141645db356fbd1333d56ce8444}{counter\+\_\+gains\+\_\+k\+\_\+offspring}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::vector$<$ size\+\_\+t $>$ nfun, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}}=1u, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) +void \mbox{\hyperlink{group__counting_gac5bf2141645db356fbd1333d56ce8444}{counter\+\_\+gains\+\_\+k\+\_\+offspring}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, std\+::vector$<$ size\+\_\+t $>$ nfun, size\+\_\+t k=1u, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em k genes gain function nfun \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_ga347aabd9065d9ff8352e58fb282b8fd2}{counter\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Keeps track of how many genes are changing (either 0, 1, or 2 if dealing with regular trees.) \end{DoxyCompactList}\item @@ -68,7 +68,7 @@ \begin{DoxyCompactList}\small\item\em Total number of neofunctionalization events. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_ga39768a8cbb21e6b775c382568a4f98f9}{counter\+\_\+co\+\_\+opt}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t nfunA, size\+\_\+t nfunB, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Function co-\/opting. \end{DoxyCompactList}\item -void \mbox{\hyperlink{group__counting_ga1f7678ddbb9f9084cb5fe1c79f205558}{counter\+\_\+k\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}}, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) +void \mbox{\hyperlink{group__counting_ga1f7678ddbb9f9084cb5fe1c79f205558}{counter\+\_\+k\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, size\+\_\+t k, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Indicator function. Equals to one if $k$ genes changed and zero otherwise. \end{DoxyCompactList}\item void \mbox{\hyperlink{group__counting_gaa6fbd08ef13dbe4b29a68e9200113feb}{counter\+\_\+less\+\_\+than\+\_\+p\+\_\+prop\+\_\+genes\+\_\+changing}} (\mbox{\hyperlink{geese-types_8hpp_a23d267147d3dde4bbbd4c298f0aed64d}{Phylo\+Counters}} $\ast$\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}, double p, size\+\_\+t duplication=\mbox{\hyperlink{class_geese_aff47a7a24431f0ee1ba9b40b3cd93557}{Geese\+::etype\+\_\+default}}) \begin{DoxyCompactList}\small\item\em Indicator function. Equals to one if $k$ genes changed and zero otherwise. \end{DoxyCompactList}\item @@ -162,7 +162,7 @@ \index{Counting@{Counting}!MAKE\_DEFM\_HASHER@{MAKE\_DEFM\_HASHER}} \index{MAKE\_DEFM\_HASHER@{MAKE\_DEFM\_HASHER}!Counting@{Counting}} \doxysubsubsection{\texorpdfstring{MAKE\_DEFM\_HASHER}{MAKE\_DEFM\_HASHER}} -{\footnotesize\ttfamily \#define MAKE\+\_\+\+DEFM\+\_\+\+HASHER(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{counters-meat_8hpp_a51327367202f40175dea83db9095a0da}{hasher}}, }\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{cov }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define MAKE\+\_\+\+DEFM\+\_\+\+HASHER(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{counters-meat_8hpp_a51327367202f40175dea83db9095a0da}{hasher}}, }\item[{}]{a, }\item[{}]{cov }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} @@ -170,12 +170,12 @@ \DoxyCodeLine{ hasher = [cov](\textcolor{keyword}{const} \mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} \& array, \mbox{\hyperlink{class_d_e_f_m_counter_data}{DEFMCounterData}} * d) \{ \(\backslash\)} \DoxyCodeLine{ std::vector< double > \mbox{\hyperlink{counters-meat_8hpp_a5e111f6687f261e4e28bd6528e7f5b48}{res}}; \(\backslash\)} \DoxyCodeLine{ \textcolor{comment}{/* Adding the column feature */} \(\backslash\)} -\DoxyCodeLine{ for (\textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} = 0u; \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} < array.nrow(); ++\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) \(\backslash\)} -\DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_a5e111f6687f261e4e28bd6528e7f5b48}{res}}.push\_back(array.D()(\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, cov)); \(\backslash\)} +\DoxyCodeLine{ for (\textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} = 0u; \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} < array.nrow(); ++\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) \(\backslash\)} +\DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_a5e111f6687f261e4e28bd6528e7f5b48}{res}}.push\_back(array.D()(\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, cov)); \(\backslash\)} \DoxyCodeLine{ \textcolor{comment}{/* Adding the fixed dims */} \(\backslash\)} -\DoxyCodeLine{ for (\textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} = 0u; \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} < (array.nrow() -\/ 1); ++\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) \(\backslash\)} +\DoxyCodeLine{ for (\textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} = 0u; \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} < (array.nrow() -\/ 1); ++\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) \(\backslash\)} \DoxyCodeLine{ \textcolor{keywordflow}{for} (\textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} = 0u; \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} < array.ncol(); ++\mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) \(\backslash\)} -\DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_a5e111f6687f261e4e28bd6528e7f5b48}{res}}.push\_back(array(\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}})); \(\backslash\)} +\DoxyCodeLine{ \mbox{\hyperlink{counters-meat_8hpp_a5e111f6687f261e4e28bd6528e7f5b48}{res}}.push\_back(array(\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}})); \(\backslash\)} \DoxyCodeLine{ return \mbox{\hyperlink{counters-meat_8hpp_a5e111f6687f261e4e28bd6528e7f5b48}{res}};\(\backslash\)} \DoxyCodeLine{ \};} @@ -220,12 +220,12 @@ \index{Counting@{Counting}!PHYLO\_COUNTER\_LAMBDA@{PHYLO\_COUNTER\_LAMBDA}} \index{PHYLO\_COUNTER\_LAMBDA@{PHYLO\_COUNTER\_LAMBDA}!Counting@{Counting}} \doxysubsubsection{\texorpdfstring{PHYLO\_COUNTER\_LAMBDA}{PHYLO\_COUNTER\_LAMBDA}} -{\footnotesize\ttfamily \#define PHYLO\+\_\+\+COUNTER\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define PHYLO\+\_\+\+COUNTER\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{ barry::Counter\_fun\_type \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = \(\backslash\)} -\DoxyCodeLine{ [](\textcolor{keyword}{const} \mbox{\hyperlink{geese-types_8hpp_a3f0cae5b6ac5c728612da24e8aa3b5f6}{PhyloArray}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_phylo_counter_data}{PhyloCounterData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +\DoxyCodeLine{ barry::Counter\_fun\_type a = \(\backslash\)} +\DoxyCodeLine{ [](\textcolor{keyword}{const} \mbox{\hyperlink{geese-types_8hpp_a3f0cae5b6ac5c728612da24e8aa3b5f6}{PhyloArray}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_phylo_counter_data}{PhyloCounterData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} \end{DoxyCode} @@ -240,12 +240,12 @@ \index{Counting@{Counting}!PHYLO\_RULE\_DYN\_LAMBDA@{PHYLO\_RULE\_DYN\_LAMBDA}} \index{PHYLO\_RULE\_DYN\_LAMBDA@{PHYLO\_RULE\_DYN\_LAMBDA}!Counting@{Counting}} \doxysubsubsection{\texorpdfstring{PHYLO\_RULE\_DYN\_LAMBDA}{PHYLO\_RULE\_DYN\_LAMBDA}} -{\footnotesize\ttfamily \#define PHYLO\+\_\+\+RULE\+\_\+\+DYN\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define PHYLO\+\_\+\+RULE\+\_\+\+DYN\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{ barry::Rule\_fun\_type \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = \(\backslash\)} -\DoxyCodeLine{ [](\textcolor{keyword}{const} \mbox{\hyperlink{geese-types_8hpp_a3f0cae5b6ac5c728612da24e8aa3b5f6}{PhyloArray}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_phylo_rule_dyn_data}{PhyloRuleDynData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +\DoxyCodeLine{ barry::Rule\_fun\_type a = \(\backslash\)} +\DoxyCodeLine{ [](\textcolor{keyword}{const} \mbox{\hyperlink{geese-types_8hpp_a3f0cae5b6ac5c728612da24e8aa3b5f6}{PhyloArray}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_phylo_rule_dyn_data}{PhyloRuleDynData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} \end{DoxyCode} diff --git a/latex/group__rules-phylo.pdf b/latex/group__rules-phylo.pdf index 4dcce0ef1..28817cec7 100644 Binary files a/latex/group__rules-phylo.pdf and b/latex/group__rules-phylo.pdf differ diff --git a/latex/group__rules-phylo.tex b/latex/group__rules-phylo.tex index 36b4662ed..20e5fc4e7 100644 --- a/latex/group__rules-phylo.tex +++ b/latex/group__rules-phylo.tex @@ -25,9 +25,9 @@ \begin{DoxyCompactList}\small\item\em Vector indicating which covariates are included in the model. \end{DoxyCompactList}\item \mbox{\hyperlink{group__rules-phylo_ga565c76b50a702e1cf86206d625fe512b}{DEFMData\+::\+DEFMData}} (\mbox{\hyperlink{defm-types_8hpp_a3ed5e2f1747dd4f4893565699469438f}{DEFMArray}} $\ast$array\+\_\+, const double $\ast$covariates\+\_\+, size\+\_\+t obs\+\_\+start\+\_\+, size\+\_\+t X\+\_\+ncol\+\_\+, size\+\_\+t X\+\_\+nrow\+\_\+) \begin{DoxyCompactList}\small\item\em Constructor. \end{DoxyCompactList}\item -double \mbox{\hyperlink{group__rules-phylo_ga66b7a40df357b79514dcbc4accfe679d}{DEFMData\+::operator()}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const +double \mbox{\hyperlink{group__rules-phylo_ga66b7a40df357b79514dcbc4accfe679d}{DEFMData\+::operator()}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const \begin{DoxyCompactList}\small\item\em Access to the row (i) colum (j) data. \end{DoxyCompactList}\item -double \mbox{\hyperlink{group__rules-phylo_gab2a20858a209c975a4a3ca341f33f9c2}{DEFMData\+::at}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const +double \mbox{\hyperlink{group__rules-phylo_gab2a20858a209c975a4a3ca341f33f9c2}{DEFMData\+::at}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}) const \item size\+\_\+t \mbox{\hyperlink{group__rules-phylo_ga8e70fc57678680180582741e5865fff2}{DEFMData\+::ncol}} () const \item @@ -41,19 +41,19 @@ \item \mbox{\hyperlink{group__rules-phylo_gadd378b812c5aed4989605ee216c0cdb2}{DEFMCounter\+Data\+::\+DEFMCounter\+Data}} (const std\+::vector$<$ size\+\_\+t $>$ indices\+\_\+, const std\+::vector$<$ double $>$ numbers\+\_\+, const std\+::vector$<$ bool $>$ logical\+\_\+, bool is\+\_\+motif\+\_\+=true) \item -size\+\_\+t \mbox{\hyperlink{group__rules-phylo_ga7f779ce019f2eaa30af381500384d393}{DEFMCounter\+Data\+::idx}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +size\+\_\+t \mbox{\hyperlink{group__rules-phylo_ga7f779ce019f2eaa30af381500384d393}{DEFMCounter\+Data\+::idx}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item -double \mbox{\hyperlink{group__rules-phylo_ga2145b3b46a20bf7ea646f0a76e4b74b8}{DEFMCounter\+Data\+::num}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +double \mbox{\hyperlink{group__rules-phylo_ga2145b3b46a20bf7ea646f0a76e4b74b8}{DEFMCounter\+Data\+::num}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item -bool \mbox{\hyperlink{group__rules-phylo_ga6366be3b3f9e1d0bfd1455f0eee20429}{DEFMCounter\+Data\+::is\+\_\+true}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +bool \mbox{\hyperlink{group__rules-phylo_ga6366be3b3f9e1d0bfd1455f0eee20429}{DEFMCounter\+Data\+::is\+\_\+true}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item \mbox{\hyperlink{group__rules-phylo_ga0b09b4a0c405b1e2f694d39136bf87f6}{DEFMCounter\+Data\+::$\sim$\+DEFMCounter\+Data}} () \item -double \mbox{\hyperlink{group__rules-phylo_ga492f81abc80e4de779c95ec8956b5e38}{DEFMRule\+Data\+::num}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +double \mbox{\hyperlink{group__rules-phylo_ga492f81abc80e4de779c95ec8956b5e38}{DEFMRule\+Data\+::num}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item -size\+\_\+t \mbox{\hyperlink{group__rules-phylo_gad92a95c8a2097d1a4cb0cf766409791c}{DEFMRule\+Data\+::idx}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +size\+\_\+t \mbox{\hyperlink{group__rules-phylo_gad92a95c8a2097d1a4cb0cf766409791c}{DEFMRule\+Data\+::idx}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item -bool \mbox{\hyperlink{group__rules-phylo_ga6bdc61aa25a629863002c9fb98a2acee}{DEFMRule\+Data\+::is\+\_\+true}} (size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const +bool \mbox{\hyperlink{group__rules-phylo_ga6bdc61aa25a629863002c9fb98a2acee}{DEFMRule\+Data\+::is\+\_\+true}} (size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) const \item \mbox{\hyperlink{group__rules-phylo_gafb84c6ffe48f80056b15e0ae6bad4b3a}{DEFMRule\+Data\+::\+DEFMRule\+Data}} () \item diff --git a/latex/model-bones_8hpp__dep__incl.pdf b/latex/model-bones_8hpp__dep__incl.pdf index 826d53c1c..6066a62be 100644 Binary files a/latex/model-bones_8hpp__dep__incl.pdf and b/latex/model-bones_8hpp__dep__incl.pdf differ diff --git a/latex/model-meat_8hpp.tex b/latex/model-meat_8hpp.tex index ac744cebf..a3bce3a2f 100644 --- a/latex/model-meat_8hpp.tex +++ b/latex/model-meat_8hpp.tex @@ -8,299 +8,16 @@ \includegraphics[width=193pt]{model-meat_8hpp__dep__incl} \end{center} \end{figure} -\doxysubsection*{Macros} -\begin{DoxyCompactItemize} -\item -\#define \mbox{\hyperlink{model-meat_8hpp_acc393c765ed15f1e43f163e69da4e06c}{MODEL\+\_\+\+TYPE}}() -\item -\#define \mbox{\hyperlink{model-meat_8hpp_a9ed2eed6ed65139cb28aabdeffd4c159}{MODEL\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() -\item -\#define \mbox{\hyperlink{model-meat_8hpp_af3f082842116f298fabd101d2727d773}{MODEL\+\_\+\+TEMPLATE}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~ template \mbox{\hyperlink{model-meat_8hpp_a9ed2eed6ed65139cb28aabdeffd4c159}{MODEL\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{model-meat_8hpp_acc393c765ed15f1e43f163e69da4e06c}{MODEL\+\_\+\+TYPE}}()\+::b -\end{DoxyCompactItemize} \doxysubsection*{Functions} \begin{DoxyCompactItemize} \item -double \mbox{\hyperlink{model-meat_8hpp_a298affefd54bd00274c6af4dd64053be}{update\+\_\+normalizing\+\_\+constant}} (const double $\ast$\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, const double $\ast$support, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}}, size\+\_\+t n) -\item -double \mbox{\hyperlink{model-meat_8hpp_a40cd8ec3301c44ffdc24b74e8e4eadc5}{likelihood\+\_\+}} (const double $\ast$stats\+\_\+target, const std\+::vector$<$ double $>$ \&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, const double normalizing\+\_\+constant, size\+\_\+t n\+\_\+params, bool log\+\_\+=false) -\item -\mbox{\hyperlink{model-meat_8hpp_a5fb312eb5849165f1459d10af2a9d1c4}{MODEL\+\_\+\+TEMPLATE}} (void, store\+\_\+psets)() \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} -\item -\mbox{\hyperlink{model-meat_8hpp_ac56fba67597d2f9ef96aee188d371615}{MODEL\+\_\+\+TEMPLATE}} (std\+::vector$<$ double $>$, gen\+\_\+key)(const Array\+\_\+\+Type \&Array\+\_\+) -\item -\mbox{\hyperlink{model-meat_8hpp_ab640e4bcb5db39ca9edfc88c37167b78}{MODEL\+\_\+\+TEMPLATE}} (void, add\+\_\+counter)(\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type -\item -\mbox{\hyperlink{model-meat_8hpp_add5291bac410eb587280c3df28a23135}{MODEL\+\_\+\+TEMPLATE}} (void, \mbox{\hyperlink{model-meat_8hpp_a891cce5f86ba09c4e4a5202a5f6021b9}{set\+\_\+counters}})(\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type -\item -support\+\_\+fun \mbox{\hyperlink{model-meat_8hpp_a891cce5f86ba09c4e4a5202a5f6021b9}{set\+\_\+counters}} (\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}) -\item -\mbox{\hyperlink{model-meat_8hpp_a3e4caa6b79e8322bc7438e3b82d88079}{MODEL\+\_\+\+TEMPLATE}} (void, add\+\_\+hasher)(\mbox{\hyperlink{typedefs_8hpp_aab7c9679e747e2f653246fbd03f26cc1}{Hasher\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type -\item -\mbox{\hyperlink{model-meat_8hpp_a940718c037c10921a73a92d4a086bc8d}{MODEL\+\_\+\+TEMPLATE}} (void, add\+\_\+rule)(\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type -\item -\mbox{\hyperlink{model-meat_8hpp_a9e51cf15af471cca323b88b48e23c3d9}{MODEL\+\_\+\+TEMPLATE}} (void, \mbox{\hyperlink{model-meat_8hpp_ab636ea2105a33446971af2dc40618a47}{set\+\_\+rules}})(\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type -\item -support\+\_\+fun \mbox{\hyperlink{model-meat_8hpp_ab636ea2105a33446971af2dc40618a47}{set\+\_\+rules}} (\mbox{\hyperlink{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}{rules}}) -\item -\mbox{\hyperlink{model-meat_8hpp_af54ed7b85c2a2b246e46bef264889f33}{MODEL\+\_\+\+TEMPLATE}} (void, add\+\_\+rule\+\_\+dyn)(\mbox{\hyperlink{class_rule}{Rule}}$<$ Array\+\_\+\+Type -\item -\mbox{\hyperlink{model-meat_8hpp_a06c4c06a5261bb7fcf99905b90897091}{MODEL\+\_\+\+TEMPLATE}} (void, \mbox{\hyperlink{model-meat_8hpp_ae09eaba6614a37ca52770bbaf18a876c}{set\+\_\+rules\+\_\+dyn}})(\mbox{\hyperlink{class_rules}{Rules}}$<$ Array\+\_\+\+Type -\item -support\+\_\+fun \mbox{\hyperlink{model-meat_8hpp_ae09eaba6614a37ca52770bbaf18a876c}{set\+\_\+rules\+\_\+dyn}} (\mbox{\hyperlink{model-meat_8hpp_aabe2227b11b09aa9567f8e6b282c3f57}{rules\+\_\+dyn}}) -\item -\mbox{\hyperlink{model-meat_8hpp_a4313848fe00827e075bdad6e44a3b81d}{MODEL\+\_\+\+TEMPLATE}} (size\+\_\+t, add\+\_\+array)(const Array\+\_\+\+Type \&Array\+\_\+ -\item -\mbox{\hyperlink{model-meat_8hpp_a95eeb80ec2bed8dfe7cfe4c62f5beee9}{if}} (transform\+\_\+model\+\_\+fun) = transform\+\_\+model\+\_\+fun(\&\mbox{\hyperlink{model-meat_8hpp_aaf06149bb923f3f75878c8217fd5c94e}{tmp\+\_\+counts}}\mbox{[}0u\mbox{]}, \mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{tmp\+\_\+counts.\+size}}()) -\item -\mbox{\hyperlink{model-meat_8hpp_a0544c3fe466e421738dae463968b70ba}{else}} stats\+\_\+target \mbox{\hyperlink{model-meat_8hpp_acd4c62abc3c4daf9fb8a68d8e4bd1634}{push\+\_\+back}} (counter\+\_\+fun.\+count\+\_\+all()) -\item -\mbox{\hyperlink{model-meat_8hpp_a6cfd9e26f1cf22d9338dcd14ca5c79ea}{if}} (\mbox{\hyperlink{model-meat_8hpp_a32e3aa42c9a0f6e84cda0c6d011e56f0}{force\+\_\+new}}$\vert$(\mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}==keys2support.\+end())) -\item -arrays2support \mbox{\hyperlink{model-meat_8hpp_ac76d416dfa2e5dceea5f830850ea25ac}{push\+\_\+back}} (\mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}-\/$>$second) -\item -\mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} arrays2support \mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{size}} () -\/ 1u -\item -\mbox{\hyperlink{model-meat_8hpp_a69985c178fd1b57b91edc5dbca8346cc}{MODEL\+\_\+\+TEMPLATE}} (double, likelihood)(const std -\item -\mbox{\hyperlink{model-meat_8hpp_a51a39d7d814c7e56a62f339eca277aeb}{MODEL\+\_\+\+TEMPLATE}} (double, likelihood\+\_\+total)(const std -\item -\mbox{\hyperlink{model-meat_8hpp_aecfb1a328febc3f5a53fcc5e83e53836}{MODEL\+\_\+\+TEMPLATE}} (double, get\+\_\+norm\+\_\+const)(const std -\item -\mbox{\hyperlink{model-meat_8hpp_ab641b7bc7272c4426934798c36ba8a0a}{MODEL\+\_\+\+TEMPLATE}} (const std\+::vector$<$ Array\+\_\+\+Type $>$ $\ast$, get\+\_\+pset)(const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) -\item -\mbox{\hyperlink{model-meat_8hpp_a82a1c61788b7e2226b7f327459c9fa5f}{MODEL\+\_\+\+TEMPLATE}} (const std\+::vector$<$ double $>$ $\ast$, get\+\_\+pset\+\_\+stats)(const size\+\_\+t \&\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) -\item -\mbox{\hyperlink{model-meat_8hpp_a6c3fd3144740fa4ec4c56757ae1797d7}{MODEL\+\_\+\+TEMPLATE}} (void, print\+\_\+stats)(size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) const -\item -\mbox{\hyperlink{model-meat_8hpp_a88a4aa1f8ed9dcb310e6fce3fcaabbbf}{MODEL\+\_\+\+TEMPLATE}} (size\+\_\+t, \mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{size}})() const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} -\item -\mbox{\hyperlink{model-meat_8hpp_a52a1bc3c373a11f1e39cf895b547d245}{MODEL\+\_\+\+TEMPLATE}} (size\+\_\+t, size\+\_\+unique)() const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} -\item -\mbox{\hyperlink{model-meat_8hpp_af5b02507fce3d744269f176971bae312}{MODEL\+\_\+\+TEMPLATE}} (size\+\_\+t, nterms)() const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} -\item -\mbox{\hyperlink{model-meat_8hpp_a52bf65dc7b7354cc60038eb3f33fd114}{MODEL\+\_\+\+TEMPLATE}} (size\+\_\+t, nrules)() const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} -\item -\mbox{\hyperlink{model-meat_8hpp_aac59f97992c595558b6ad71a9492307a}{MODEL\+\_\+\+TEMPLATE}} (size\+\_\+t, nrules\+\_\+dyn)() const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} -\item -\mbox{\hyperlink{model-meat_8hpp_ac7ef7b93e5e6e393497f8c1810efe18e}{MODEL\+\_\+\+TEMPLATE}} (size\+\_\+t, support\+\_\+size)() const \mbox{\hyperlink{counters-meat_8hpp_ae763aeff9df78ca7be5f904fa4bbdc09}{noexcept}} -\item -\mbox{\hyperlink{model-meat_8hpp_a3770fd8c8b8d3649a101c80e77cf5092}{MODEL\+\_\+\+TEMPLATE}} (std\+::vector$<$ std\+::string $>$, colnames)() const -\item -\mbox{\hyperlink{model-meat_8hpp_a9c6303be0fc1fb92393b587404cb152f}{MODEL\+\_\+\+TEMPLATE}} (Array\+\_\+\+Type, sample)(const Array\+\_\+\+Type \&Array\+\_\+ -\item -\mbox{\hyperlink{model-meat_8hpp_ae0cc58172b429d3838ce1261ec5d78e4}{if}} (\mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}==keys2support.\+end()) -\item -std\+::uniform\+\_\+real\+\_\+distribution \mbox{\hyperlink{model-meat_8hpp_ac41994c414d968a397a48b933272453f}{urand}} (0, 1) -\item -\mbox{\hyperlink{model-meat_8hpp_a9d60367e064d8367dc84b5de42870332}{if}} ((\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{probs.\+size}}() $>$ 0u) \&\&(\mbox{\hyperlink{typedefs_8hpp_aed8ddfe5ae95bf4d6f76221ce06566fb}{vec\+\_\+equal\+\_\+approx}}(\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, params\+\_\+last\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}))) -\item -std\+::vector$<$ double $>$ \mbox{\hyperlink{model-meat_8hpp_ade0c4a5bb093e62686d62f2dd009bd25}{temp\+\_\+stats}} (\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{params.\+size}}()) -\item -\mbox{\hyperlink{model-meat_8hpp_a0d7d60577ad0b6507f74f18ab2eccab9}{for}} (size\+\_\+t array=0u;array$<$ \mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{probs.\+size}}();++array) -\item -\mbox{\hyperlink{model-meat_8hpp_a344cf38d0b829e04052739fcd74e3b8b}{MODEL\+\_\+\+TEMPLATE}} (double, conditional\+\_\+prob)(const Array\+\_\+\+Type \&Array\+\_\+ -\item -A \mbox{\hyperlink{model-meat_8hpp_a4caf204372c3c29af6d87e56708bdba1}{insert\+\_\+cell}} (\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, A.\+default\+\_\+val(), true, false) -\item -\mbox{\hyperlink{model-meat_8hpp_aaf06149bb923f3f75878c8217fd5c94e}{tmp\+\_\+counts}} \mbox{\hyperlink{model-meat_8hpp_a0851b3fce6040febb01e2484ed9f4f54}{reserve}} (\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{size}}()) -\item -\mbox{\hyperlink{model-meat_8hpp_a486b5b9c20df6e6446d4928b06eeb401}{for}} (size\+\_\+t ii=0u;ii$<$ \mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{size}}();++ii) \mbox{\hyperlink{model-meat_8hpp_ac76d416dfa2e5dceea5f830850ea25ac}{tmp\+\_\+counts.\+push\+\_\+back}}(\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}} -\/$>$ operator\mbox{[}$\,$\mbox{]}(ii).count(A, \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}})) -\item -\mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} (1.\+0+std\+::exp(-\/\mbox{\hyperlink{typedefs_8hpp_af6f9c021aa2e49b1cb82fbd32026f1dc}{vec\+\_\+inner\+\_\+prod}}$<$ double $>$(\&\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}\mbox{[}0u\mbox{]}, \&\mbox{\hyperlink{model-meat_8hpp_aaf06149bb923f3f75878c8217fd5c94e}{tmp\+\_\+counts}}\mbox{[}0u\mbox{]}, \mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{params.\+size}}()))) -\item -\mbox{\hyperlink{model-meat_8hpp_a1e31bdab44335dab4b1ccc082a624fdd}{MODEL\+\_\+\+TEMPLATE}} (const std\+::mt19937 $\ast$, get\+\_\+rengine)() const -\item -\mbox{\hyperlink{model-meat_8hpp_abdedbda5f86170e660b4bb11c4827887}{MODEL\+\_\+\+TEMPLATE}} (std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$, get\+\_\+stats\+\_\+target)() -\item -\mbox{\hyperlink{model-meat_8hpp_a4eee01b8ead8e269f8af5ba2142efa30}{MODEL\+\_\+\+TEMPLATE}} (std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$, get\+\_\+stats\+\_\+support)() -\item -\mbox{\hyperlink{model-meat_8hpp_a98accc2669eb478ed64f9f7434e417f3}{MODEL\+\_\+\+TEMPLATE}} (std\+::vector$<$ size\+\_\+t $>$ $\ast$, get\+\_\+arrays2support)() -\item -\mbox{\hyperlink{model-meat_8hpp_a1b4ab38ad856016e67ff1975c140089e}{MODEL\+\_\+\+TEMPLATE}} (std\+::vector$<$ std\+::vector$<$ Array\+\_\+\+Type $>$ $>$ $\ast$, get\+\_\+pset\+\_\+arrays)() -\item -\mbox{\hyperlink{model-meat_8hpp_a05d64a51381043e545359fd19d01d98a}{MODEL\+\_\+\+TEMPLATE}} (std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$, get\+\_\+pset\+\_\+stats)() -\item -\mbox{\hyperlink{model-meat_8hpp_a3d6c96b5bf647f75c79ca488d7c9d607}{MODEL\+\_\+\+TEMPLATE}} (std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$, get\+\_\+pset\+\_\+probs)() -\item -\mbox{\hyperlink{model-meat_8hpp_ab15b13990207319d7cfdd25be5a04105}{MODEL\+\_\+\+TEMPLATE}} (void, set\+\_\+transform\+\_\+model)(std -\end{DoxyCompactItemize} -\doxysubsection*{Variables} -\begin{DoxyCompactItemize} -\item -\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} \& \mbox{\hyperlink{model-meat_8hpp_a7eb7ba1e03825c85183cb90dc0635de4}{counter}} -\item -\mbox{\hyperlink{model-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}{return}} -\item -\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} \mbox{\hyperlink{model-meat_8hpp_a2648076475c82f8bfed17e9c46b36f68}{count\+\_\+fun\+\_\+}} -\item -\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ \mbox{\hyperlink{model-meat_8hpp_aa9ebe808e2d37ce1008f4e98fe5c5c6b}{init\+\_\+fun\+\_\+}} -\item -\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$ Array\+\_\+\+Type, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $>$ \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} \mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\+\_\+}} -\item -\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} $\ast$ \mbox{\hyperlink{model-meat_8hpp_aa79c6fa1f7864a8258e8f2c0a68b6d35}{counters\+\_\+}} -\item -\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} \mbox{\hyperlink{model-meat_8hpp_ab8ef6c3e79d05d9438b72a41339d7842}{fun\+\_\+}} -\item -\mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} \& \mbox{\hyperlink{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}{rules}} -\item -\mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} $\ast$ \mbox{\hyperlink{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}{rules\+\_\+}} -\item -\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} \mbox{\hyperlink{model-meat_8hpp_aa497331abaad5b5e074d2c8069c82095}{delete\+\_\+rules}} = false -\item -Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type \mbox{\hyperlink{model-meat_8hpp_ad3d009522a41d83535b5e753b0d8fbf8}{rule\+\_\+fun\+\_\+}} -\item -\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} \mbox{\hyperlink{model-meat_8hpp_aabe2227b11b09aa9567f8e6b282c3f57}{rules\+\_\+dyn}} = \mbox{\hyperlink{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}{rules\+\_\+}} -\item -\mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} \mbox{\hyperlink{model-meat_8hpp_a8a6558a1649d2586cf34bcbba0b78030}{delete\+\_\+rules\+\_\+dyn}} = false +double \mbox{\hyperlink{model-meat_8hpp_a298affefd54bd00274c6af4dd64053be}{update\+\_\+normalizing\+\_\+constant}} (const double $\ast$params, const double $\ast$support, size\+\_\+t k, size\+\_\+t n) \item -bool \mbox{\hyperlink{model-meat_8hpp_a32e3aa42c9a0f6e84cda0c6d011e56f0}{force\+\_\+new}} -\item -std\+::vector$<$ double $>$ \mbox{\hyperlink{model-meat_8hpp_af101e9ca6306855e019e0e18f0690468}{key}} = \mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$gen\+\_\+hash(Array\+\_\+) -\item -\mbox{\hyperlink{typedefs_8hpp_a02ed8dec96bc528c8bc3d8cb3c4674a5}{Map\+Vec\+\_\+type}}$<$ double, size\+\_\+t $>$\+::const\+\_\+iterator \mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}} = keys2support.\+find(\mbox{\hyperlink{model-meat_8hpp_af101e9ca6306855e019e0e18f0690468}{key}}) -\item -\mbox{\hyperlink{model-meat_8hpp_a067bec3fe3db997771ba2ce3868cbda7}{stats\+\_\+support\+\_\+n\+\_\+arrays}} \mbox{[}\mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}-\/$>$second\mbox{]} -\item -const std\+::vector$<$ double $>$ \& \mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}} -\item -size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} = \mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}-\/$>$second -\item -size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = arrays2support\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}\mbox{]} -\item -double \mbox{\hyperlink{model-meat_8hpp_a880a49112fedae68e714341a9a082fb6}{r}} = \mbox{\hyperlink{model-meat_8hpp_ac41994c414d968a397a48b933272453f}{urand}}($\ast$rengine) -\item -double \mbox{\hyperlink{model-meat_8hpp_aeea68eecbfe5f35e520ebf20c508dd10}{cumprob}} = 0.\+0 -\item -size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}{k}} = \mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{params.\+size}}() -\item -size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a39e00005b35af5a31ce2677c113cfdff}{j}} = 0u -\item -std\+::vector$<$ double $>$ \& \mbox{\hyperlink{model-meat_8hpp_ab14bb4f5b80bcefa0fc098e58e5b44f6}{probs}} = pset\+\_\+probs\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]} -\item -\mbox{\hyperlink{model-meat_8hpp_a0544c3fe466e421738dae463968b70ba}{else}} -\item -const std\+::vector$<$ double $>$ \& \mbox{\hyperlink{model-meat_8hpp_ada7a2adf3edef6b8859ce756bd31e4b6}{stats}} = pset\+\_\+stats\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]} -\item -int \mbox{\hyperlink{model-meat_8hpp_a091414baaf8fc6076ca08c2c0ede7066}{i\+\_\+matches}} = -\/1 -\item -\mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} \mbox{\hyperlink{model-meat_8hpp_adb446932e2140e5a8c0420d63fe1300e}{pset\+\_\+arrays}} \mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}\mbox{[}\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}\mbox{]} -\item -std\+::vector$<$ double $>$ \mbox{\hyperlink{model-meat_8hpp_aaf06149bb923f3f75878c8217fd5c94e}{tmp\+\_\+counts}} -\item -template \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} -\item -template \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\+\_\+\+Rule\+\_\+\+Type}} +double \mbox{\hyperlink{model-meat_8hpp_a40cd8ec3301c44ffdc24b74e8e4eadc5}{likelihood\+\_\+}} (const double $\ast$stats\+\_\+target, const std\+::vector$<$ double $>$ \¶ms, const double normalizing\+\_\+constant, size\+\_\+t n\+\_\+params, bool log\+\_\+=false) \end{DoxyCompactItemize} -\doxysubsection{Macro Definition Documentation} -\mbox{\Hypertarget{model-meat_8hpp_af3f082842116f298fabd101d2727d773}\label{model-meat_8hpp_af3f082842116f298fabd101d2727d773}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE}{MODEL\_TEMPLATE}} -{\footnotesize\ttfamily \#define MODEL\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{model-meat_8hpp_a9ed2eed6ed65139cb28aabdeffd4c159}{MODEL\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{model-meat_8hpp_acc393c765ed15f1e43f163e69da4e06c}{MODEL\+\_\+\+TYPE}}()\+::b} - - - -Definition at line 131 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a9ed2eed6ed65139cb28aabdeffd4c159}\label{model-meat_8hpp_a9ed2eed6ed65139cb28aabdeffd4c159}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE\_ARGS@{MODEL\_TEMPLATE\_ARGS}} -\index{MODEL\_TEMPLATE\_ARGS@{MODEL\_TEMPLATE\_ARGS}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE\_ARGS}{MODEL\_TEMPLATE\_ARGS}} -{\footnotesize\ttfamily template MODEL\+\_\+\+TEMPLATE\+\_\+\+ARGS(\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} - -{\bfseries Value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{ <\textcolor{keyword}{typename} Array\_Type, \textcolor{keyword}{typename} \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\_Counter\_Type}},\(\backslash\)} -\DoxyCodeLine{ typename \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\_Rule\_Type}}, \textcolor{keyword}{typename} Data\_Rule\_Dyn\_Type>} - -\end{DoxyCode} - - -Definition at line 128 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_acc393c765ed15f1e43f163e69da4e06c}\label{model-meat_8hpp_acc393c765ed15f1e43f163e69da4e06c}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TYPE@{MODEL\_TYPE}} -\index{MODEL\_TYPE@{MODEL\_TYPE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TYPE}{MODEL\_TYPE}} -{\footnotesize\ttfamily template Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $\ast$ MODEL\+\_\+\+TYPE(\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} - -{\bfseries Value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{ \mbox{\hyperlink{class_model}{Model}}} - -\end{DoxyCode} - - -Definition at line 125 of file model-\/meat.\+hpp. - - - \doxysubsection{Function Documentation} -\mbox{\Hypertarget{model-meat_8hpp_a0d7d60577ad0b6507f74f18ab2eccab9}\label{model-meat_8hpp_a0d7d60577ad0b6507f74f18ab2eccab9}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!for@{for}} -\index{for@{for}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{for()}{for()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} -{\footnotesize\ttfamily for (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} - - - -Definition at line 1316 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a486b5b9c20df6e6446d4928b06eeb401}\label{model-meat_8hpp_a486b5b9c20df6e6446d4928b06eeb401}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!for@{for}} -\index{for@{for}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{for()}{for()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} -{\footnotesize\ttfamily for (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{ii = {\ttfamily 0u;ii$<$~\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{size}}();++ii} }\end{DoxyParamCaption}) -\/$>$ operator\mbox{[}$\,$\mbox{]}(ii).count(A, \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}))} - -\mbox{\Hypertarget{model-meat_8hpp_a9d60367e064d8367dc84b5de42870332}\label{model-meat_8hpp_a9d60367e064d8367dc84b5de42870332}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!if@{if}} -\index{if@{if}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{if()}{if()}\hspace{0.1cm}{\footnotesize\ttfamily [1/4]}} -{\footnotesize\ttfamily if (\begin{DoxyParamCaption}\item[{(\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{probs.\+size}}() $>$ 0u) \&\&(\mbox{\hyperlink{typedefs_8hpp_aed8ddfe5ae95bf4d6f76221ce06566fb}{vec\+\_\+equal\+\_\+approx}}(\mbox{\hyperlink{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}{params}}, params\+\_\+last\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}))}]{ }\end{DoxyParamCaption})} - - - -Definition at line 1299 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a6cfd9e26f1cf22d9338dcd14ca5c79ea}\label{model-meat_8hpp_a6cfd9e26f1cf22d9338dcd14ca5c79ea}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!if@{if}} -\index{if@{if}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{if()}{if()}\hspace{0.1cm}{\footnotesize\ttfamily [2/4]}} -{\footnotesize\ttfamily if (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{model-meat_8hpp_a32e3aa42c9a0f6e84cda0c6d011e56f0}{force\+\_\+new}}$\vert$}]{locator==keys2support.\+end() }\end{DoxyParamCaption})} - -When computing with the powerset, we need to grow the corresponding vectors on the fly - -Definition at line 457 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_ae0cc58172b429d3838ce1261ec5d78e4}\label{model-meat_8hpp_ae0cc58172b429d3838ce1261ec5d78e4}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!if@{if}} -\index{if@{if}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{if()}{if()}\hspace{0.1cm}{\footnotesize\ttfamily [3/4]}} -{\footnotesize\ttfamily if (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}}]{ = {\ttfamily =~keys2support.end()} }\end{DoxyParamCaption})} - -When computing with the powerset, we need to grow the corresponding vectors on the fly - -Definition at line 1201 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a95eeb80ec2bed8dfe7cfe4c62f5beee9}\label{model-meat_8hpp_a95eeb80ec2bed8dfe7cfe4c62f5beee9}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!if@{if}} -\index{if@{if}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{if()}{if()}\hspace{0.1cm}{\footnotesize\ttfamily [4/4]}} -{\footnotesize\ttfamily if (\begin{DoxyParamCaption}\item[{transform\+\_\+model\+\_\+fun}]{ }\end{DoxyParamCaption}) = transform\+\_\+model\+\_\+fun(\&\mbox{\hyperlink{model-meat_8hpp_aaf06149bb923f3f75878c8217fd5c94e}{tmp\+\_\+counts}}\mbox{[}0u\mbox{]}, \mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{tmp\+\_\+counts.\+size}}())} - - - -Definition at line 442 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a4caf204372c3c29af6d87e56708bdba1}\label{model-meat_8hpp_a4caf204372c3c29af6d87e56708bdba1}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!insert\_cell@{insert\_cell}} -\index{insert\_cell@{insert\_cell}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{insert\_cell()}{insert\_cell()}} -{\footnotesize\ttfamily A insert\+\_\+cell (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}}]{, }\item[{\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}}]{, }\item[{A.}]{default\+\_\+val(), }\item[{true}]{, }\item[{false}]{ }\end{DoxyParamCaption})} - \mbox{\Hypertarget{model-meat_8hpp_a40cd8ec3301c44ffdc24b74e8e4eadc5}\label{model-meat_8hpp_a40cd8ec3301c44ffdc24b74e8e4eadc5}} \index{model-\/meat.hpp@{model-\/meat.hpp}!likelihood\_@{likelihood\_}} \index{likelihood\_@{likelihood\_}!model-\/meat.hpp@{model-\/meat.hpp}} @@ -309,351 +26,7 @@ -Definition at line 63 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a9c6303be0fc1fb92393b587404cb152f}\label{model-meat_8hpp_a9c6303be0fc1fb92393b587404cb152f}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [1/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{Array\+\_\+\+Type}]{, }\item[{sample}]{ }\end{DoxyParamCaption}) const \&} - -\mbox{\Hypertarget{model-meat_8hpp_a1e31bdab44335dab4b1ccc082a624fdd}\label{model-meat_8hpp_a1e31bdab44335dab4b1ccc082a624fdd}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [2/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{const std\+::mt19937 $\ast$}]{, }\item[{get\+\_\+rengine}]{ }\end{DoxyParamCaption}) const} - - - -Definition at line 1386 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_ab641b7bc7272c4426934798c36ba8a0a}\label{model-meat_8hpp_ab641b7bc7272c4426934798c36ba8a0a}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [3/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ Array\+\_\+\+Type $>$ $\ast$}]{, }\item[{get\+\_\+pset}]{ }\end{DoxyParamCaption}) const \&} - - - -Definition at line 927 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a82a1c61788b7e2226b7f327459c9fa5f}\label{model-meat_8hpp_a82a1c61788b7e2226b7f327459c9fa5f}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [4/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{const std\+::vector$<$ double $>$ $\ast$}]{, }\item[{get\+\_\+pset\+\_\+stats}]{ }\end{DoxyParamCaption}) const \&} - - - -Definition at line 939 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a344cf38d0b829e04052739fcd74e3b8b}\label{model-meat_8hpp_a344cf38d0b829e04052739fcd74e3b8b}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [5/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{double}]{, }\item[{conditional\+\_\+prob}]{ }\end{DoxyParamCaption}) const \&} - -\mbox{\Hypertarget{model-meat_8hpp_aecfb1a328febc3f5a53fcc5e83e53836}\label{model-meat_8hpp_aecfb1a328febc3f5a53fcc5e83e53836}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [6/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{double}]{, }\item[{get\+\_\+norm\+\_\+const}]{ }\end{DoxyParamCaption}) const} - - - -Definition at line 891 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a69985c178fd1b57b91edc5dbca8346cc}\label{model-meat_8hpp_a69985c178fd1b57b91edc5dbca8346cc}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [7/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{double}]{, }\item[{likelihood}]{ }\end{DoxyParamCaption}) const} - - - -Definition at line 569 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a51a39d7d814c7e56a62f339eca277aeb}\label{model-meat_8hpp_a51a39d7d814c7e56a62f339eca277aeb}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [8/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{double}]{, }\item[{likelihood\+\_\+total}]{ }\end{DoxyParamCaption}) const} - - - -Definition at line 825 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a4313848fe00827e075bdad6e44a3b81d}\label{model-meat_8hpp_a4313848fe00827e075bdad6e44a3b81d}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [9/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{, }\item[{add\+\_\+array}]{ }\end{DoxyParamCaption}) const \&} - -\mbox{\Hypertarget{model-meat_8hpp_a52bf65dc7b7354cc60038eb3f33fd114}\label{model-meat_8hpp_a52bf65dc7b7354cc60038eb3f33fd114}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [10/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{, }\item[{nrules}]{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} - - - -Definition at line 1065 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_aac59f97992c595558b6ad71a9492307a}\label{model-meat_8hpp_aac59f97992c595558b6ad71a9492307a}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [11/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{, }\item[{nrules\+\_\+dyn}]{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} - - - -Definition at line 1072 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_af5b02507fce3d744269f176971bae312}\label{model-meat_8hpp_af5b02507fce3d744269f176971bae312}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [12/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{, }\item[{nterms}]{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} - - - -Definition at line 1055 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a88a4aa1f8ed9dcb310e6fce3fcaabbbf}\label{model-meat_8hpp_a88a4aa1f8ed9dcb310e6fce3fcaabbbf}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [13/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{, }\item[{\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{size}}}]{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} - - - -Definition at line 1040 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a52a1bc3c373a11f1e39cf895b547d245}\label{model-meat_8hpp_a52a1bc3c373a11f1e39cf895b547d245}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [14/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{, }\item[{size\+\_\+unique}]{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} - - - -Definition at line 1047 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_ac7ef7b93e5e6e393497f8c1810efe18e}\label{model-meat_8hpp_ac7ef7b93e5e6e393497f8c1810efe18e}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [15/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{, }\item[{support\+\_\+size}]{ }\end{DoxyParamCaption}) const\hspace{0.3cm}{\ttfamily [noexcept]}} - - - -Definition at line 1079 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_ac56fba67597d2f9ef96aee188d371615}\label{model-meat_8hpp_ac56fba67597d2f9ef96aee188d371615}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [16/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{std\+::vector$<$ double $>$}]{, }\item[{gen\+\_\+key}]{ }\end{DoxyParamCaption}) const \&} - - - -Definition at line 312 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a98accc2669eb478ed64f9f7434e417f3}\label{model-meat_8hpp_a98accc2669eb478ed64f9f7434e417f3}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [17/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{std\+::vector$<$ size\+\_\+t $>$ $\ast$}]{, }\item[{get\+\_\+arrays2support}]{ }\end{DoxyParamCaption})} - - - -Definition at line 1421 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a3770fd8c8b8d3649a101c80e77cf5092}\label{model-meat_8hpp_a3770fd8c8b8d3649a101c80e77cf5092}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [18/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{std\+::vector$<$ std\+::string $>$}]{, }\item[{colnames}]{ }\end{DoxyParamCaption}) const} - - - -Definition at line 1091 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a1b4ab38ad856016e67ff1975c140089e}\label{model-meat_8hpp_a1b4ab38ad856016e67ff1975c140089e}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [19/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{std\+::vector$<$ std\+::vector$<$ Array\+\_\+\+Type $>$ $>$ $\ast$}]{, }\item[{get\+\_\+pset\+\_\+arrays}]{ }\end{DoxyParamCaption})} - - - -Definition at line 1426 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a3d6c96b5bf647f75c79ca488d7c9d607}\label{model-meat_8hpp_a3d6c96b5bf647f75c79ca488d7c9d607}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [20/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$}]{, }\item[{get\+\_\+pset\+\_\+probs}]{ }\end{DoxyParamCaption})} - - - -Definition at line 1434 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a05d64a51381043e545359fd19d01d98a}\label{model-meat_8hpp_a05d64a51381043e545359fd19d01d98a}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [21/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$}]{, }\item[{get\+\_\+pset\+\_\+stats}]{ }\end{DoxyParamCaption})} - - - -Definition at line 1430 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a4eee01b8ead8e269f8af5ba2142efa30}\label{model-meat_8hpp_a4eee01b8ead8e269f8af5ba2142efa30}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [22/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$}]{, }\item[{get\+\_\+stats\+\_\+support}]{ }\end{DoxyParamCaption})} - - - -Definition at line 1416 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_abdedbda5f86170e660b4bb11c4827887}\label{model-meat_8hpp_abdedbda5f86170e660b4bb11c4827887}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [23/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{std\+::vector$<$ std\+::vector$<$ double $>$ $>$ $\ast$}]{, }\item[{get\+\_\+stats\+\_\+target}]{ }\end{DoxyParamCaption})} - - - -Definition at line 1411 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_ab640e4bcb5db39ca9edfc88c37167b78}\label{model-meat_8hpp_ab640e4bcb5db39ca9edfc88c37167b78}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [24/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{add\+\_\+counter}]{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_a3e4caa6b79e8322bc7438e3b82d88079}\label{model-meat_8hpp_a3e4caa6b79e8322bc7438e3b82d88079}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [25/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{add\+\_\+hasher}]{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_a940718c037c10921a73a92d4a086bc8d}\label{model-meat_8hpp_a940718c037c10921a73a92d4a086bc8d}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [26/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{add\+\_\+rule}]{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_af54ed7b85c2a2b246e46bef264889f33}\label{model-meat_8hpp_af54ed7b85c2a2b246e46bef264889f33}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [27/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{add\+\_\+rule\+\_\+dyn}]{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_a6c3fd3144740fa4ec4c56757ae1797d7}\label{model-meat_8hpp_a6c3fd3144740fa4ec4c56757ae1797d7}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [28/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{print\+\_\+stats}]{ }\end{DoxyParamCaption}) const} - - - -Definition at line 950 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_add5291bac410eb587280c3df28a23135}\label{model-meat_8hpp_add5291bac410eb587280c3df28a23135}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [29/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{\mbox{\hyperlink{model-meat_8hpp_a891cce5f86ba09c4e4a5202a5f6021b9}{set\+\_\+counters}}}]{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_a9e51cf15af471cca323b88b48e23c3d9}\label{model-meat_8hpp_a9e51cf15af471cca323b88b48e23c3d9}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [30/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{\mbox{\hyperlink{model-meat_8hpp_ab636ea2105a33446971af2dc40618a47}{set\+\_\+rules}}}]{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_a06c4c06a5261bb7fcf99905b90897091}\label{model-meat_8hpp_a06c4c06a5261bb7fcf99905b90897091}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [31/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{\mbox{\hyperlink{model-meat_8hpp_ae09eaba6614a37ca52770bbaf18a876c}{set\+\_\+rules\+\_\+dyn}}}]{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_ab15b13990207319d7cfdd25be5a04105}\label{model-meat_8hpp_ab15b13990207319d7cfdd25be5a04105}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [32/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{set\+\_\+transform\+\_\+model}]{ }\end{DoxyParamCaption})} - - - -Definition at line 1438 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a5fb312eb5849165f1459d10af2a9d1c4}\label{model-meat_8hpp_a5fb312eb5849165f1459d10af2a9d1c4}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!MODEL\_TEMPLATE@{MODEL\_TEMPLATE}} -\index{MODEL\_TEMPLATE@{MODEL\_TEMPLATE}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{MODEL\_TEMPLATE()}{MODEL\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [33/33]}} -{\footnotesize\ttfamily MODEL\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{store\+\_\+psets}]{ }\end{DoxyParamCaption})\hspace{0.3cm}{\ttfamily [noexcept]}} - - - -Definition at line 305 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_acd4c62abc3c4daf9fb8a68d8e4bd1634}\label{model-meat_8hpp_acd4c62abc3c4daf9fb8a68d8e4bd1634}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!push\_back@{push\_back}} -\index{push\_back@{push\_back}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{push\_back()}{push\_back()}\hspace{0.1cm}{\footnotesize\ttfamily [1/2]}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a0544c3fe466e421738dae463968b70ba}{else}} stats\+\_\+target push\+\_\+back (\begin{DoxyParamCaption}\item[{counter\+\_\+fun.}]{count\+\_\+all() }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_ac76d416dfa2e5dceea5f830850ea25ac}\label{model-meat_8hpp_ac76d416dfa2e5dceea5f830850ea25ac}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!push\_back@{push\_back}} -\index{push\_back@{push\_back}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{push\_back()}{push\_back()}\hspace{0.1cm}{\footnotesize\ttfamily [2/2]}} -{\footnotesize\ttfamily arrays2support push\+\_\+back (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}-\/$>$}]{second }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_a0851b3fce6040febb01e2484ed9f4f54}\label{model-meat_8hpp_a0851b3fce6040febb01e2484ed9f4f54}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!reserve@{reserve}} -\index{reserve@{reserve}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{reserve()}{reserve()}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_aaf06149bb923f3f75878c8217fd5c94e}{tmp\+\_\+counts}} reserve (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$}]{size() }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}\label{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!return@{return}} -\index{return@{return}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{return()}{return()}} -{\footnotesize\ttfamily return (\begin{DoxyParamCaption}\item[{1.\+0+}]{std\+::exp-\/vec\+\_\+inner\+\_\+prod$<$ double $>$(\¶ms\mbox{[}0u\mbox{]}, \&tmp\+\_\+counts\mbox{[}0u\mbox{]}, params.\+size()) }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_a891cce5f86ba09c4e4a5202a5f6021b9}\label{model-meat_8hpp_a891cce5f86ba09c4e4a5202a5f6021b9}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!set\_counters@{set\_counters}} -\index{set\_counters@{set\_counters}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{set\_counters()}{set\_counters()}} -{\footnotesize\ttfamily counter\+\_\+fun set\+\_\+counters (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}}]{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_ab636ea2105a33446971af2dc40618a47}\label{model-meat_8hpp_ab636ea2105a33446971af2dc40618a47}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!set\_rules@{set\_rules}} -\index{set\_rules@{set\_rules}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{set\_rules()}{set\_rules()}} -{\footnotesize\ttfamily support\+\_\+fun set\+\_\+rules (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}{rules}}}]{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_ae09eaba6614a37ca52770bbaf18a876c}\label{model-meat_8hpp_ae09eaba6614a37ca52770bbaf18a876c}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!set\_rules\_dyn@{set\_rules\_dyn}} -\index{set\_rules\_dyn@{set\_rules\_dyn}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{set\_rules\_dyn()}{set\_rules\_dyn()}} -{\footnotesize\ttfamily support\+\_\+fun set\+\_\+rules\+\_\+dyn (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{model-meat_8hpp_aabe2227b11b09aa9567f8e6b282c3f57}{rules\+\_\+dyn}}}]{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}\label{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!size@{size}} -\index{size@{size}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{size()}{size()}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} arrays2support size (\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})} - -\mbox{\Hypertarget{model-meat_8hpp_ade0c4a5bb093e62686d62f2dd009bd25}\label{model-meat_8hpp_ade0c4a5bb093e62686d62f2dd009bd25}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!temp\_stats@{temp\_stats}} -\index{temp\_stats@{temp\_stats}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{temp\_stats()}{temp\_stats()}} -{\footnotesize\ttfamily std\+::vector$<$ double $>$ temp\+\_\+stats (\begin{DoxyParamCaption}\item[{params.}]{size() }\end{DoxyParamCaption})} +Definition at line 85 of file model-\/meat.\+hpp. \mbox{\Hypertarget{model-meat_8hpp_a298affefd54bd00274c6af4dd64053be}\label{model-meat_8hpp_a298affefd54bd00274c6af4dd64053be}} \index{model-\/meat.hpp@{model-\/meat.hpp}!update\_normalizing\_constant@{update\_normalizing\_constant}} @@ -665,408 +38,3 @@ Definition at line 9 of file model-\/meat.\+hpp. -\mbox{\Hypertarget{model-meat_8hpp_ac41994c414d968a397a48b933272453f}\label{model-meat_8hpp_ac41994c414d968a397a48b933272453f}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!urand@{urand}} -\index{urand@{urand}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{urand()}{urand()}} -{\footnotesize\ttfamily std\+::uniform\+\_\+real\+\_\+distribution urand (\begin{DoxyParamCaption}\item[{0}]{, }\item[{1}]{ }\end{DoxyParamCaption})} - - - -\doxysubsection{Variable Documentation} -\mbox{\Hypertarget{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}\label{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!a@{a}} -\index{a@{a}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{a}{a}} -{\footnotesize\ttfamily size\+\_\+t a = arrays2support\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}\mbox{]}} - - - -Definition at line 1287 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a2648076475c82f8bfed17e9c46b36f68}\label{model-meat_8hpp_a2648076475c82f8bfed17e9c46b36f68}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!count\_fun\_@{count\_fun\_}} -\index{count\_fun\_@{count\_fun\_}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{count\_fun\_}{count\_fun\_}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} count\+\_\+fun\+\_\+} - - - -Definition at line 327 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a7eb7ba1e03825c85183cb90dc0635de4}\label{model-meat_8hpp_a7eb7ba1e03825c85183cb90dc0635de4}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!counter@{counter}} -\index{counter@{counter}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{counter}{counter}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}\& counter} - -{\bfseries Initial value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{\{} -\DoxyCodeLine{ } -\DoxyCodeLine{ \mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/>add\_counter(\mbox{\hyperlink{model-meat_8hpp_a7eb7ba1e03825c85183cb90dc0635de4}{counter}}, \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\_Counter\_Type}}())} - -\end{DoxyCode} - - -Definition at line 319 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_aa79c6fa1f7864a8258e8f2c0a68b6d35}\label{model-meat_8hpp_aa79c6fa1f7864a8258e8f2c0a68b6d35}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!counters\_@{counters\_}} -\index{counters\_@{counters\_}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{counters\_}{counters\_}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}$\ast$ counters\+\_\+} - -{\bfseries Initial value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{\{} -\DoxyCodeLine{} -\DoxyCodeLine{ \textcolor{keywordflow}{if} (delete\_counters) \{} -\DoxyCodeLine{ \textcolor{keyword}{delete} \mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}};} -\DoxyCodeLine{ delete\_counters = \textcolor{keyword}{false};} -\DoxyCodeLine{ \}} -\DoxyCodeLine{ } -\DoxyCodeLine{ this-\/>\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}} = \mbox{\hyperlink{model-meat_8hpp_aa79c6fa1f7864a8258e8f2c0a68b6d35}{counters\_}}} - -\end{DoxyCode} - - -Definition at line 343 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_aeea68eecbfe5f35e520ebf20c508dd10}\label{model-meat_8hpp_aeea68eecbfe5f35e520ebf20c508dd10}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!cumprob@{cumprob}} -\index{cumprob@{cumprob}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{cumprob}{cumprob}} -{\footnotesize\ttfamily double cumprob = 0.\+0} - - - -Definition at line 1292 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}\label{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!data\_@{data\_}} -\index{data\_@{data\_}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{data\_}{data\_}} -{\footnotesize\ttfamily Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type data\+\_\+} - -{\bfseries Initial value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{\{} -\DoxyCodeLine{ } -\DoxyCodeLine{ \mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/>add\_counter(} -\DoxyCodeLine{ \mbox{\hyperlink{model-meat_8hpp_a2648076475c82f8bfed17e9c46b36f68}{count\_fun\_}},} -\DoxyCodeLine{ \mbox{\hyperlink{model-meat_8hpp_aa9ebe808e2d37ce1008f4e98fe5c5c6b}{init\_fun\_}},} -\DoxyCodeLine{ \mbox{\hyperlink{model-meat_8hpp_add877eae455a35aea9e5c7de9c6f2dbb}{data\_}}} -\DoxyCodeLine{ )} - -\end{DoxyCode} - - -Definition at line 329 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}\label{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!Data\_Counter\_Type@{Data\_Counter\_Type}} -\index{Data\_Counter\_Type@{Data\_Counter\_Type}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{Data\_Counter\_Type}{Data\_Counter\_Type}} -{\footnotesize\ttfamily template Data\+\_\+\+Counter\+\_\+\+Type} - - - -Definition at line 1406 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_ab662732874257647dc631846c67da586}\label{model-meat_8hpp_ab662732874257647dc631846c67da586}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!Data\_Rule\_Type@{Data\_Rule\_Type}} -\index{Data\_Rule\_Type@{Data\_Rule\_Type}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{Data\_Rule\_Type}{Data\_Rule\_Type}} -{\footnotesize\ttfamily template Data\+\_\+\+Rule\+\_\+\+Type} - - - -Definition at line 1406 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_aa497331abaad5b5e074d2c8069c82095}\label{model-meat_8hpp_aa497331abaad5b5e074d2c8069c82095}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!delete\_rules@{delete\_rules}} -\index{delete\_rules@{delete\_rules}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{delete\_rules}{delete\_rules}} -{\footnotesize\ttfamily \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} delete\+\_\+rules = false} - - - -Definition at line 386 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a8a6558a1649d2586cf34bcbba0b78030}\label{model-meat_8hpp_a8a6558a1649d2586cf34bcbba0b78030}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!delete\_rules\_dyn@{delete\_rules\_dyn}} -\index{delete\_rules\_dyn@{delete\_rules\_dyn}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{delete\_rules\_dyn}{delete\_rules\_dyn}} -{\footnotesize\ttfamily \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} delete\+\_\+rules\+\_\+dyn = false} - - - -Definition at line 425 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a0544c3fe466e421738dae463968b70ba}\label{model-meat_8hpp_a0544c3fe466e421738dae463968b70ba}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!else@{else}} -\index{else@{else}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{else}{else}} -{\footnotesize\ttfamily else} - -{\bfseries Initial value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{\{ } -\DoxyCodeLine{ } -\DoxyCodeLine{ \mbox{\hyperlink{model-meat_8hpp_ab14bb4f5b80bcefa0fc098e58e5b44f6}{probs}}.resize(\mbox{\hyperlink{model-meat_8hpp_adb446932e2140e5a8c0420d63fe1300e}{pset\_arrays}}[\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}].\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{size}}())} - -\end{DoxyCode} - - -Definition at line 1309 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a32e3aa42c9a0f6e84cda0c6d011e56f0}\label{model-meat_8hpp_a32e3aa42c9a0f6e84cda0c6d011e56f0}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!force\_new@{force\_new}} -\index{force\_new@{force\_new}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{force\_new}{force\_new}} -{\footnotesize\ttfamily bool force\+\_\+new} - -{\bfseries Initial value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{\{} -\DoxyCodeLine{ } -\DoxyCodeLine{ } -\DoxyCodeLine{ counter\_fun.reset\_array(\&Array\_)} - -\end{DoxyCode} - - -Definition at line 436 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_ab8ef6c3e79d05d9438b72a41339d7842}\label{model-meat_8hpp_ab8ef6c3e79d05d9438b72a41339d7842}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!fun\_@{fun\_}} -\index{fun\_@{fun\_}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{fun\_}{fun\_}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} fun\+\_\+} - -{\bfseries Initial value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{\{} -\DoxyCodeLine{} -\DoxyCodeLine{ \mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/>add\_hash(\mbox{\hyperlink{model-meat_8hpp_ab8ef6c3e79d05d9438b72a41339d7842}{fun\_}})} - -\end{DoxyCode} - - -Definition at line 360 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}\label{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!i@{i}} -\index{i@{i}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{i}{i}} -{\footnotesize\ttfamily const std\+::vector$<$ double $>$ size\+\_\+t i = \mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}-\/$>$second} - - - -Definition at line 1195 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a091414baaf8fc6076ca08c2c0ede7066}\label{model-meat_8hpp_a091414baaf8fc6076ca08c2c0ede7066}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!i\_matches@{i\_matches}} -\index{i\_matches@{i\_matches}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{i\_matches}{i\_matches}} -{\footnotesize\ttfamily int i\+\_\+matches = -\/1} - - - -Definition at line 1315 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_aa9ebe808e2d37ce1008f4e98fe5c5c6b}\label{model-meat_8hpp_aa9ebe808e2d37ce1008f4e98fe5c5c6b}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!init\_fun\_@{init\_fun\_}} -\index{init\_fun\_@{init\_fun\_}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{init\_fun\_}{init\_fun\_}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}} \mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\+\_\+fun\+\_\+type}}$<$Array\+\_\+\+Type,\mbox{\hyperlink{model-meat_8hpp_a69b87f58d3fa400f5d9b076072530f69}{Data\+\_\+\+Counter\+\_\+\+Type}}$>$ init\+\_\+fun\+\_\+} - - - -Definition at line 328 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a39e00005b35af5a31ce2677c113cfdff}\label{model-meat_8hpp_a39e00005b35af5a31ce2677c113cfdff}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!j@{j}} -\index{j@{j}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{j}{j}} -{\footnotesize\ttfamily const std\+::vector$<$ double $>$ size\+\_\+t size\+\_\+t j = 0u} - - - -Definition at line 1297 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}\label{model-meat_8hpp_a9389e4770ba454a2e14f870491495cb2}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!k@{k}} -\index{k@{k}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{k}{k}} -{\footnotesize\ttfamily size\+\_\+t k = \mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{params.\+size}}()} - - - -Definition at line 1294 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_af101e9ca6306855e019e0e18f0690468}\label{model-meat_8hpp_af101e9ca6306855e019e0e18f0690468}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!key@{key}} -\index{key@{key}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{key}{key}} -{\footnotesize\ttfamily std\+::vector$<$ double $>$ key = \mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$gen\+\_\+hash(Array\+\_\+)} - - - -Definition at line 455 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}\label{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!locator@{locator}} -\index{locator@{locator}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{locator}{locator}} -{\footnotesize\ttfamily \mbox{\hyperlink{typedefs_8hpp_a02ed8dec96bc528c8bc3d8cb3c4674a5}{Map\+Vec\+\_\+type}}$<$ double, size\+\_\+t $>$\+::const\+\_\+iterator locator = keys2support.\+find(\mbox{\hyperlink{model-meat_8hpp_af101e9ca6306855e019e0e18f0690468}{key}})} - - - -Definition at line 456 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}\label{model-meat_8hpp_a8b812351f601758974ca8a5020a8f7f2}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!params@{params}} -\index{params@{params}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{params}{params}} -{\footnotesize\ttfamily const std\+::vector$<$ double $>$ \& params} - -{\bfseries Initial value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{\{} -\DoxyCodeLine{} -\DoxyCodeLine{ } -\DoxyCodeLine{ \textcolor{keywordflow}{if} (!this-\/>with\_pset)} -\DoxyCodeLine{ \textcolor{keywordflow}{throw} std::logic\_error(\textcolor{stringliteral}{"{}Sampling is only available when store\_pset() is active."{}})} - -\end{DoxyCode} - - -Definition at line 1188 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_ab14bb4f5b80bcefa0fc098e58e5b44f6}\label{model-meat_8hpp_ab14bb4f5b80bcefa0fc098e58e5b44f6}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!probs@{probs}} -\index{probs@{probs}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{probs}{probs}} -{\footnotesize\ttfamily std\+::vector$<$ double $>$\& probs = pset\+\_\+probs\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}} - - - -Definition at line 1298 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_adb446932e2140e5a8c0420d63fe1300e}\label{model-meat_8hpp_adb446932e2140e5a8c0420d63fe1300e}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!pset\_arrays@{pset\_arrays}} -\index{pset\_arrays@{pset\_arrays}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{pset\_arrays}{pset\_arrays}} -{\footnotesize\ttfamily \mbox{\hyperlink{model-meat_8hpp_a9ef4985dfa4bd1115422568aac975f7e}{return}} \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} pset\+\_\+arrays\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}\mbox{[}\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}\mbox{]}} - - - -Definition at line 1349 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a880a49112fedae68e714341a9a082fb6}\label{model-meat_8hpp_a880a49112fedae68e714341a9a082fb6}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!r@{r}} -\index{r@{r}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{r}{r}} -{\footnotesize\ttfamily double r = \mbox{\hyperlink{model-meat_8hpp_ac41994c414d968a397a48b933272453f}{urand}}($\ast$rengine)} - - - -Definition at line 1291 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}\label{model-meat_8hpp_a9717e7bbecb906637e86cef6da3d83c2}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!return@{return}} -\index{return@{return}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{return}{return}} -{\footnotesize\ttfamily return} - - - -Definition at line 323 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_ad3d009522a41d83535b5e753b0d8fbf8}\label{model-meat_8hpp_ad3d009522a41d83535b5e753b0d8fbf8}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!rule\_fun\_@{rule\_fun\_}} -\index{rule\_fun\_@{rule\_fun\_}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{rule\_fun\_}{rule\_fun\_}} -{\footnotesize\ttfamily Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type rule\+\_\+fun\+\_\+} - - - -Definition at line 404 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}\label{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!rules@{rules}} -\index{rules@{rules}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{rules}{rules}} -{\footnotesize\ttfamily \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} rules} - -{\bfseries Initial value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{\{} -\DoxyCodeLine{ } -\DoxyCodeLine{ \mbox{\hyperlink{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}{rules}}-\/>add\_rule(\mbox{\hyperlink{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}{rules}}, \mbox{\hyperlink{model-meat_8hpp_ab662732874257647dc631846c67da586}{Data\_Rule\_Type}}())} - -\end{DoxyCode} - - -Definition at line 370 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}\label{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!rules\_@{rules\_}} -\index{rules\_@{rules\_}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{rules\_}{rules\_}} -{\footnotesize\ttfamily Data\+\_\+\+Rule\+\_\+\+Dyn\+\_\+\+Type $\ast$ rules\+\_\+} - -{\bfseries Initial value\+:} -\begin{DoxyCode}{0} -\DoxyCodeLine{\{} -\DoxyCodeLine{} -\DoxyCodeLine{ \textcolor{keywordflow}{if} (\mbox{\hyperlink{model-meat_8hpp_aa497331abaad5b5e074d2c8069c82095}{delete\_rules}})} -\DoxyCodeLine{ \textcolor{keyword}{delete} \mbox{\hyperlink{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}{rules}}} - -\end{DoxyCode} - - -Definition at line 379 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_aabe2227b11b09aa9567f8e6b282c3f57}\label{model-meat_8hpp_aabe2227b11b09aa9567f8e6b282c3f57}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!rules\_dyn@{rules\_dyn}} -\index{rules\_dyn@{rules\_dyn}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{rules\_dyn}{rules\_dyn}} -{\footnotesize\ttfamily \mbox{\hyperlink{barray-meat-operators_8hpp_a16b15c19feaca0a6aa77abb6865710ef}{this}} rules\+\_\+dyn = \mbox{\hyperlink{model-meat_8hpp_a193348dc03fb67a29c0fbac36e823588}{rules\+\_\+}}} - - - -Definition at line 424 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_ada7a2adf3edef6b8859ce756bd31e4b6}\label{model-meat_8hpp_ada7a2adf3edef6b8859ce756bd31e4b6}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!stats@{stats}} -\index{stats@{stats}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{stats}{stats}} -{\footnotesize\ttfamily const std\+::vector$<$ double $>$\& stats = pset\+\_\+stats\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}\mbox{]}} - - - -Definition at line 1313 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_a067bec3fe3db997771ba2ce3868cbda7}\label{model-meat_8hpp_a067bec3fe3db997771ba2ce3868cbda7}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!stats\_support\_n\_arrays@{stats\_support\_n\_arrays}} -\index{stats\_support\_n\_arrays@{stats\_support\_n\_arrays}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{stats\_support\_n\_arrays}{stats\_support\_n\_arrays}} -{\footnotesize\ttfamily stats\+\_\+support\+\_\+n\+\_\+arrays\mbox{[}\mbox{\hyperlink{model-meat_8hpp_acf8eccc22a7b9dcde5a2ba1ad4d5e6ea}{locator}}-\/$>$second\mbox{]}} - - - -Definition at line 560 of file model-\/meat.\+hpp. - -\mbox{\Hypertarget{model-meat_8hpp_aaf06149bb923f3f75878c8217fd5c94e}\label{model-meat_8hpp_aaf06149bb923f3f75878c8217fd5c94e}} -\index{model-\/meat.hpp@{model-\/meat.hpp}!tmp\_counts@{tmp\_counts}} -\index{tmp\_counts@{tmp\_counts}!model-\/meat.hpp@{model-\/meat.hpp}} -\doxysubsubsection{\texorpdfstring{tmp\_counts}{tmp\_counts}} -{\footnotesize\ttfamily std\+::vector$<$ double $>$ tmp\+\_\+counts} - - - -Definition at line 1368 of file model-\/meat.\+hpp. - diff --git a/latex/model-meat_8hpp__dep__incl.pdf b/latex/model-meat_8hpp__dep__incl.pdf index 666fe5394..d5cc358fd 100644 Binary files a/latex/model-meat_8hpp__dep__incl.pdf and b/latex/model-meat_8hpp__dep__incl.pdf differ diff --git a/latex/network-css_8hpp.tex b/latex/network-css_8hpp.tex index e7c62f6d1..2bda894ce 100644 --- a/latex/network-css_8hpp.tex +++ b/latex/network-css_8hpp.tex @@ -15,11 +15,11 @@ \item \#define \mbox{\hyperlink{network-css_8hpp_a3a492b987e7d2b4af02a436ef4860b8c}{CSS\+\_\+\+MATCH\+\_\+\+TYPE}}() \item -\#define \mbox{\hyperlink{network-css_8hpp_a95751730bfbf23e60dc6d99a0926c8cd}{CSS\+\_\+\+CASE\+\_\+\+TRUTH}}()~\mbox{\hyperlink{model-meat_8hpp_a9d60367e064d8367dc84b5de42870332}{if}} ((\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} $<$ n) \&\& (\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $<$ n)) +\#define \mbox{\hyperlink{network-css_8hpp_a95751730bfbf23e60dc6d99a0926c8cd}{CSS\+\_\+\+CASE\+\_\+\+TRUTH}}()~\mbox{\hyperlink{counters-meat_8hpp_aad00cb483160c346052d1ca08ec136ed}{if}} ((\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} $<$ n) \&\& (\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $<$ n)) \item \#define \mbox{\hyperlink{network-css_8hpp_ae8e03eb6b9f8c2da28b22016510d3171}{CSS\+\_\+\+TRUE\+\_\+\+CELLS}}() \item -\#define \mbox{\hyperlink{network-css_8hpp_ae34e3408c6bb6787262ac80b8d49cc42}{CSS\+\_\+\+CASE\+\_\+\+PERCEIVED}}()~\mbox{\hyperlink{model-meat_8hpp_a0544c3fe466e421738dae463968b70ba}{else}} \mbox{\hyperlink{model-meat_8hpp_a9d60367e064d8367dc84b5de42870332}{if}} (((\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} $>$= s) \&\& (\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} $<$ e)) \& ((\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $>$= s) \&\& (\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $<$ e))) +\#define \mbox{\hyperlink{network-css_8hpp_ae34e3408c6bb6787262ac80b8d49cc42}{CSS\+\_\+\+CASE\+\_\+\+PERCEIVED}}()~else \mbox{\hyperlink{counters-meat_8hpp_aad00cb483160c346052d1ca08ec136ed}{if}} (((\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} $>$= s) \&\& (\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} $<$ e)) \& ((\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $>$= s) \&\& (\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $<$ e))) \item \#define \mbox{\hyperlink{network-css_8hpp_a84d551a21be3ac412d3cdee5f51755da}{CSS\+\_\+\+PERCEIVED\+\_\+\+CELLS}}() \item @@ -78,11 +78,11 @@ {\bfseries Value\+:} \begin{DoxyCode}{0} \DoxyCodeLine{ std::string \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\_}} = (\mbox{\hyperlink{counters-meat_8hpp_a42cb6e97e822b37d4d982c1106a1b53e}{name}});\(\backslash\)} -\DoxyCodeLine{ for (\textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} = 0u; \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} < end\_.size(); ++\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) \{ \(\backslash\)} -\DoxyCodeLine{ std::string tmpname = \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\_}} + \textcolor{stringliteral}{"{} ("{}} + std::to\_string(\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) + \textcolor{stringliteral}{"{})"{}} + \(\backslash\)} +\DoxyCodeLine{ for (\textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} = 0u; \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} < end\_.size(); ++\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) \{ \(\backslash\)} +\DoxyCodeLine{ std::string tmpname = \mbox{\hyperlink{counters-meat_8hpp_abb04fb263c779506595a61eaedf1f7ef}{name\_}} + \textcolor{stringliteral}{"{} ("{}} + std::to\_string(\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) + \textcolor{stringliteral}{"{})"{}} + \(\backslash\)} \DoxyCodeLine{ ((counter\_type == 1u) ? \textcolor{stringliteral}{"{} (only perceiver)"{}} : ((counter\_type == 2u)? \textcolor{stringliteral}{"{} (only alters)"{}}: \textcolor{stringliteral}{"{}"{}}));\(\backslash\)} \DoxyCodeLine{ counters-\/>add\_counter(tmp\_count, tmp\_init, \textcolor{keyword}{nullptr}, \(\backslash\)} -\DoxyCodeLine{ \mbox{\hyperlink{class_net_counter_data}{NetCounterData}}(\{netsize, \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} == 0u ? netsize : end\_[\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}-\/1], end\_[\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}], counter\_type, \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}\}, \{\}),\(\backslash\)} +\DoxyCodeLine{ \mbox{\hyperlink{class_net_counter_data}{NetCounterData}}(\{netsize, \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} == 0u ? netsize : end\_[\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}-\/1], end\_[\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}], counter\_type, \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}\}, \{\}),\(\backslash\)} \DoxyCodeLine{ tmpname);\}} \end{DoxyCode} @@ -104,7 +104,7 @@ \index{network-\/css.hpp@{network-\/css.hpp}!CSS\_CASE\_PERCEIVED@{CSS\_CASE\_PERCEIVED}} \index{CSS\_CASE\_PERCEIVED@{CSS\_CASE\_PERCEIVED}!network-\/css.hpp@{network-\/css.hpp}} \doxysubsubsection{\texorpdfstring{CSS\_CASE\_PERCEIVED}{CSS\_CASE\_PERCEIVED}} -{\footnotesize\ttfamily \#define CSS\+\_\+\+CASE\+\_\+\+PERCEIVED(\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})~\mbox{\hyperlink{model-meat_8hpp_a0544c3fe466e421738dae463968b70ba}{else}} \mbox{\hyperlink{model-meat_8hpp_a9d60367e064d8367dc84b5de42870332}{if}} (((\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} $>$= s) \&\& (\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} $<$ e)) \& ((\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $>$= s) \&\& (\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $<$ e)))} +{\footnotesize\ttfamily \#define CSS\+\_\+\+CASE\+\_\+\+PERCEIVED(\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})~else \mbox{\hyperlink{counters-meat_8hpp_aad00cb483160c346052d1ca08ec136ed}{if}} (((\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} $>$= s) \&\& (\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} $<$ e)) \& ((\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $>$= s) \&\& (\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $<$ e)))} @@ -114,7 +114,7 @@ \index{network-\/css.hpp@{network-\/css.hpp}!CSS\_CASE\_TRUTH@{CSS\_CASE\_TRUTH}} \index{CSS\_CASE\_TRUTH@{CSS\_CASE\_TRUTH}!network-\/css.hpp@{network-\/css.hpp}} \doxysubsubsection{\texorpdfstring{CSS\_CASE\_TRUTH}{CSS\_CASE\_TRUTH}} -{\footnotesize\ttfamily \#define CSS\+\_\+\+CASE\+\_\+\+TRUTH(\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})~\mbox{\hyperlink{model-meat_8hpp_a9d60367e064d8367dc84b5de42870332}{if}} ((\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} $<$ n) \&\& (\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $<$ n))} +{\footnotesize\ttfamily \#define CSS\+\_\+\+CASE\+\_\+\+TRUTH(\begin{DoxyParamCaption}{ }\end{DoxyParamCaption})~\mbox{\hyperlink{counters-meat_8hpp_aad00cb483160c346052d1ca08ec136ed}{if}} ((\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} $<$ n) \&\& (\mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} $<$ n))} @@ -128,9 +128,9 @@ {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{ \textcolor{keywordflow}{for} (\textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} = 0u; \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} < end\_.size(); ++\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}) \{\(\backslash\)} -\DoxyCodeLine{ if (\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} == 0u) \textcolor{keywordflow}{continue}; \(\backslash\)} -\DoxyCodeLine{ else \textcolor{keywordflow}{if} (end\_[\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}] < end\_[\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}-\/1u]) \(\backslash\)} +\DoxyCodeLine{ \textcolor{keywordflow}{for} (\textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} = 0u; \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} < end\_.size(); ++\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}) \{\(\backslash\)} +\DoxyCodeLine{ if (\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} == 0u) \textcolor{keywordflow}{continue}; \(\backslash\)} +\DoxyCodeLine{ else \textcolor{keywordflow}{if} (end\_[\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}] < end\_[\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}-\/1u]) \(\backslash\)} \DoxyCodeLine{ throw std::logic\_error(\textcolor{stringliteral}{"{}Endpoints should be specified in order."{}});\}} \end{DoxyCode} @@ -203,12 +203,12 @@ {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{ \textcolor{keywordtype}{size\_t} i\_ = \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} -\/ s; \(\backslash\)} +\DoxyCodeLine{ \textcolor{keywordtype}{size\_t} i\_ = \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} -\/ s; \(\backslash\)} \DoxyCodeLine{ size\_t j\_ = \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} -\/ s; \(\backslash\)} \DoxyCodeLine{ CSS\_MATCH\_TYPE() \(\backslash\)} -\DoxyCodeLine{ double tji = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} -\/ s, \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} -\/ s, \textcolor{keyword}{false})); \(\backslash\)} -\DoxyCodeLine{ double pji = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keyword}{false})); \(\backslash\)} -\DoxyCodeLine{ double tij = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} -\/ s, \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} -\/ s, \textcolor{keyword}{false}));} +\DoxyCodeLine{ double tji = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} -\/ s, \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} -\/ s, \textcolor{keyword}{false})); \(\backslash\)} +\DoxyCodeLine{ double pji = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keyword}{false})); \(\backslash\)} +\DoxyCodeLine{ double tij = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} -\/ s, \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} -\/ s, \textcolor{keyword}{false}));} \end{DoxyCode} @@ -244,12 +244,12 @@ {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{ \textcolor{keywordtype}{size\_t} i\_ = \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}; \(\backslash\)} +\DoxyCodeLine{ \textcolor{keywordtype}{size\_t} i\_ = \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}; \(\backslash\)} \DoxyCodeLine{ size\_t j\_ = \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}; \(\backslash\)} \DoxyCodeLine{ CSS\_MATCH\_TYPE() \(\backslash\)} -\DoxyCodeLine{ double tji = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keyword}{false})); \(\backslash\)} -\DoxyCodeLine{ double pij = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} + s, \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} + s, \textcolor{keyword}{false})); \(\backslash\)} -\DoxyCodeLine{ double pji = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} + s, \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} + s, \textcolor{keyword}{false}));} +\DoxyCodeLine{ double tji = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keyword}{false})); \(\backslash\)} +\DoxyCodeLine{ double pij = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} + s, \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} + s, \textcolor{keyword}{false})); \(\backslash\)} +\DoxyCodeLine{ double pji = \textcolor{keyword}{static\_cast<}\textcolor{keywordtype}{double}\textcolor{keyword}{>}(Array(\mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}} + s, \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} + s, \textcolor{keyword}{false}));} \end{DoxyCode} diff --git a/latex/network-css_8hpp__dep__incl.pdf b/latex/network-css_8hpp__dep__incl.pdf index 3929b96c6..6cceefe5d 100644 Binary files a/latex/network-css_8hpp__dep__incl.pdf and b/latex/network-css_8hpp__dep__incl.pdf differ diff --git a/latex/network_8hpp.tex b/latex/network_8hpp.tex index 3a7b8478c..6f09bbccf 100644 --- a/latex/network_8hpp.tex +++ b/latex/network_8hpp.tex @@ -28,27 +28,27 @@ \textbf{ }\par \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{network_8hpp_aa75d9c31d709148061626dc54a07723a}{NET\+\_\+\+C\+\_\+\+DATA\+\_\+\+IDX}}(\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}})~(data.\+indices\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}\mbox{]}) +\#define \mbox{\hyperlink{network_8hpp_aa75d9c31d709148061626dc54a07723a}{NET\+\_\+\+C\+\_\+\+DATA\+\_\+\+IDX}}(\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}})~(data.\+indices\mbox{[}\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}\mbox{]}) \item -\#define \mbox{\hyperlink{network_8hpp_ad5ead8d8915b0536a4d5a6c3ef5001fb}{NET\+\_\+\+C\+\_\+\+DATA\+\_\+\+NUM}}(\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}})~(data.\+numbers\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}\mbox{]}) +\#define \mbox{\hyperlink{network_8hpp_ad5ead8d8915b0536a4d5a6c3ef5001fb}{NET\+\_\+\+C\+\_\+\+DATA\+\_\+\+NUM}}(\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}})~(data.\+numbers\mbox{[}\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}\mbox{]}) \end{DoxyCompactItemize} \begin{Indent}\textbf{ Macros for defining counters}\par \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{network_8hpp_ad7bf24e04cb161400f56990502bda0e2}{NETWORK\+\_\+\+COUNTER}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{network_8hpp_ad7bf24e04cb161400f56990502bda0e2}{NETWORK\+\_\+\+COUNTER}}(a) \item -\#define \mbox{\hyperlink{network_8hpp_a8d2a3024f1f05e716a1b4cacfe661fac}{NETWORK\+\_\+\+COUNTER\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{network_8hpp_a8d2a3024f1f05e716a1b4cacfe661fac}{NETWORK\+\_\+\+COUNTER\+\_\+\+LAMBDA}}(a) \item -\#define \mbox{\hyperlink{network_8hpp_a0e9872b5ae19d4e845e545d1f42057b8}{NETWORKDENSE\+\_\+\+COUNTER\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{network_8hpp_a0e9872b5ae19d4e845e545d1f42057b8}{NETWORKDENSE\+\_\+\+COUNTER\+\_\+\+LAMBDA}}(a) \end{DoxyCompactItemize} \end{Indent} \begin{Indent}\textbf{ Macros for defining rules}\par \begin{DoxyCompactItemize} \item -\#define \mbox{\hyperlink{network_8hpp_a029e63cbf36397488cbd25940afb4c38}{NETWORK\+\_\+\+RULE}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{network_8hpp_a029e63cbf36397488cbd25940afb4c38}{NETWORK\+\_\+\+RULE}}(a) \item -\#define \mbox{\hyperlink{network_8hpp_a676ca55541b8cd4d73caca424ea7e53d}{NETWORK\+\_\+\+RULE\+\_\+\+LAMBDA}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) +\#define \mbox{\hyperlink{network_8hpp_a676ca55541b8cd4d73caca424ea7e53d}{NETWORK\+\_\+\+RULE\+\_\+\+LAMBDA}}(a) \end{DoxyCompactItemize} \end{Indent} \doxysubsection*{Functions} @@ -120,7 +120,7 @@ \end{DoxyParams} }\begin{DoxyCompactItemize} \item -{\footnotesize template$<$typename Tnet = Network$>$ }\\void \mbox{\hyperlink{network_8hpp_ade7c09a084b266e48f9222c54fd12681}{rules\+\_\+zerodiag}} (\mbox{\hyperlink{network_8hpp_aa7fdf74711b0b97f984156cee30683c3}{Net\+Rules}}$<$ Tnet $>$ $\ast$\mbox{\hyperlink{model-meat_8hpp_a9182438a7dfb477d783232a9256027bb}{rules}}) +{\footnotesize template$<$typename Tnet = Network$>$ }\\void \mbox{\hyperlink{network_8hpp_ade7c09a084b266e48f9222c54fd12681}{rules\+\_\+zerodiag}} (\mbox{\hyperlink{network_8hpp_aa7fdf74711b0b97f984156cee30683c3}{Net\+Rules}}$<$ Tnet $>$ $\ast$rules) \begin{DoxyCompactList}\small\item\em Number of edges. \end{DoxyCompactList}\end{DoxyCompactItemize} \end{Indent} \doxysubsection*{Convenient typedefs for network objects.} @@ -175,7 +175,7 @@ \index{network.hpp@{network.hpp}!NET\_C\_DATA\_IDX@{NET\_C\_DATA\_IDX}} \index{NET\_C\_DATA\_IDX@{NET\_C\_DATA\_IDX}!network.hpp@{network.hpp}} \doxysubsubsection{\texorpdfstring{NET\_C\_DATA\_IDX}{NET\_C\_DATA\_IDX}} -{\footnotesize\ttfamily \#define NET\+\_\+\+C\+\_\+\+DATA\+\_\+\+IDX(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} }\end{DoxyParamCaption})~(data.\+indices\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}\mbox{]})} +{\footnotesize\ttfamily \#define NET\+\_\+\+C\+\_\+\+DATA\+\_\+\+IDX(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} }\end{DoxyParamCaption})~(data.\+indices\mbox{[}\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}\mbox{]})} @@ -185,7 +185,7 @@ \index{network.hpp@{network.hpp}!NET\_C\_DATA\_NUM@{NET\_C\_DATA\_NUM}} \index{NET\_C\_DATA\_NUM@{NET\_C\_DATA\_NUM}!network.hpp@{network.hpp}} \doxysubsubsection{\texorpdfstring{NET\_C\_DATA\_NUM}{NET\_C\_DATA\_NUM}} -{\footnotesize\ttfamily \#define NET\+\_\+\+C\+\_\+\+DATA\+\_\+\+NUM(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} }\end{DoxyParamCaption})~(data.\+numbers\mbox{[}\mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}\mbox{]})} +{\footnotesize\ttfamily \#define NET\+\_\+\+C\+\_\+\+DATA\+\_\+\+NUM(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} }\end{DoxyParamCaption})~(data.\+numbers\mbox{[}\mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}\mbox{]})} @@ -195,12 +195,12 @@ \index{network.hpp@{network.hpp}!NETWORK\_COUNTER@{NETWORK\_COUNTER}} \index{NETWORK\_COUNTER@{NETWORK\_COUNTER}!network.hpp@{network.hpp}} \doxysubsubsection{\texorpdfstring{NETWORK\_COUNTER}{NETWORK\_COUNTER}} -{\footnotesize\ttfamily \#define NETWORK\+\_\+\+COUNTER(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define NETWORK\+\_\+\+COUNTER(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} \DoxyCodeLine{\textcolor{keyword}{template}<\textcolor{keyword}{typename} Tnet = Network>\(\backslash\)} -\DoxyCodeLine{inline double (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) (\textcolor{keyword}{const} Tnet \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_net_counter_data}{NetCounterData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +\DoxyCodeLine{inline double (a) (\textcolor{keyword}{const} Tnet \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_net_counter_data}{NetCounterData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} \end{DoxyCode} Function for definition of a network counter function @@ -211,12 +211,12 @@ \index{network.hpp@{network.hpp}!NETWORK\_COUNTER\_LAMBDA@{NETWORK\_COUNTER\_LAMBDA}} \index{NETWORK\_COUNTER\_LAMBDA@{NETWORK\_COUNTER\_LAMBDA}!network.hpp@{network.hpp}} \doxysubsubsection{\texorpdfstring{NETWORK\_COUNTER\_LAMBDA}{NETWORK\_COUNTER\_LAMBDA}} -{\footnotesize\ttfamily \#define NETWORK\+\_\+\+COUNTER\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define NETWORK\+\_\+\+COUNTER\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\_fun\_type}} \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = \(\backslash\)} -\DoxyCodeLine{ [](\textcolor{keyword}{const} Tnet \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_net_counter_data}{NetCounterData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +\DoxyCodeLine{\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\_fun\_type}} a = \(\backslash\)} +\DoxyCodeLine{ [](\textcolor{keyword}{const} Tnet \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_net_counter_data}{NetCounterData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} \end{DoxyCode} Lambda function for definition of a network counter function @@ -227,12 +227,12 @@ \index{network.hpp@{network.hpp}!NETWORK\_RULE@{NETWORK\_RULE}} \index{NETWORK\_RULE@{NETWORK\_RULE}!network.hpp@{network.hpp}} \doxysubsubsection{\texorpdfstring{NETWORK\_RULE}{NETWORK\_RULE}} -{\footnotesize\ttfamily \#define NETWORK\+\_\+\+RULE(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define NETWORK\+\_\+\+RULE(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} \DoxyCodeLine{\textcolor{keyword}{template}<\textcolor{keyword}{typename} Tnet = Network>\(\backslash\)} -\DoxyCodeLine{inline bool (\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}) (\textcolor{keyword}{const} Tnet \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \textcolor{keywordtype}{bool} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +\DoxyCodeLine{inline bool (a) (\textcolor{keyword}{const} Tnet \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \textcolor{keywordtype}{bool} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} \end{DoxyCode} Function for definition of a network counter function @@ -243,12 +243,12 @@ \index{network.hpp@{network.hpp}!NETWORK\_RULE\_LAMBDA@{NETWORK\_RULE\_LAMBDA}} \index{NETWORK\_RULE\_LAMBDA@{NETWORK\_RULE\_LAMBDA}!network.hpp@{network.hpp}} \doxysubsubsection{\texorpdfstring{NETWORK\_RULE\_LAMBDA}{NETWORK\_RULE\_LAMBDA}} -{\footnotesize\ttfamily \#define NETWORK\+\_\+\+RULE\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define NETWORK\+\_\+\+RULE\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\_fun\_type}} \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = \(\backslash\)} -\DoxyCodeLine{[](\textcolor{keyword}{const} Tnet \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \textcolor{keywordtype}{bool} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +\DoxyCodeLine{\mbox{\hyperlink{typedefs_8hpp_a940d68f006f1ffee7f5b207bf61aefe4}{Rule\_fun\_type}} a = \(\backslash\)} +\DoxyCodeLine{[](\textcolor{keyword}{const} Tnet \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \textcolor{keywordtype}{bool} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} \end{DoxyCode} Lambda function for definition of a network counter function @@ -259,12 +259,12 @@ \index{network.hpp@{network.hpp}!NETWORKDENSE\_COUNTER\_LAMBDA@{NETWORKDENSE\_COUNTER\_LAMBDA}} \index{NETWORKDENSE\_COUNTER\_LAMBDA@{NETWORKDENSE\_COUNTER\_LAMBDA}!network.hpp@{network.hpp}} \doxysubsubsection{\texorpdfstring{NETWORKDENSE\_COUNTER\_LAMBDA}{NETWORKDENSE\_COUNTER\_LAMBDA}} -{\footnotesize\ttfamily \#define NETWORKDENSE\+\_\+\+COUNTER\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily \#define NETWORKDENSE\+\_\+\+COUNTER\+\_\+\+LAMBDA(\begin{DoxyParamCaption}\item[{}]{a }\end{DoxyParamCaption})} {\bfseries Value\+:} \begin{DoxyCode}{0} -\DoxyCodeLine{\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\_fun\_type}} \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} = \(\backslash\)} -\DoxyCodeLine{ [](\textcolor{keyword}{const} \mbox{\hyperlink{class_b_array_dense}{NetworkDense}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_net_counter_data}{NetCounterData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} +\DoxyCodeLine{\mbox{\hyperlink{typedefs_8hpp_ad7626021d4acb1dfc9419e667923a01f}{Counter\_fun\_type}} a = \(\backslash\)} +\DoxyCodeLine{ [](\textcolor{keyword}{const} \mbox{\hyperlink{class_b_array_dense}{NetworkDense}} \& Array, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, \textcolor{keywordtype}{size\_t} \mbox{\hyperlink{counters-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, \mbox{\hyperlink{class_net_counter_data}{NetCounterData}} \& \mbox{\hyperlink{counters-meat_8hpp_a6fc02db1fc3ce220c7c5e2999822ecf7}{data}})} \end{DoxyCode} diff --git a/latex/network_8hpp__dep__incl.pdf b/latex/network_8hpp__dep__incl.pdf index 248f112a3..e808f0dfc 100644 Binary files a/latex/network_8hpp__dep__incl.pdf and b/latex/network_8hpp__dep__incl.pdf differ diff --git a/latex/network_8hpp__incl.pdf b/latex/network_8hpp__incl.pdf index b5c96b5fd..73b5183ce 100644 Binary files a/latex/network_8hpp__incl.pdf and b/latex/network_8hpp__incl.pdf differ diff --git a/latex/powerset-bones_8hpp__dep__incl.pdf b/latex/powerset-bones_8hpp__dep__incl.pdf index 47bf20cde..124271c9e 100644 Binary files a/latex/powerset-bones_8hpp__dep__incl.pdf and b/latex/powerset-bones_8hpp__dep__incl.pdf differ diff --git a/latex/powerset-meat_8hpp__dep__incl.pdf b/latex/powerset-meat_8hpp__dep__incl.pdf index 585ee2175..cb20e5da3 100644 Binary files a/latex/powerset-meat_8hpp__dep__incl.pdf and b/latex/powerset-meat_8hpp__dep__incl.pdf differ diff --git a/latex/progress_8hpp__dep__incl.pdf b/latex/progress_8hpp__dep__incl.pdf index ce3a772e0..df1a04e73 100644 Binary files a/latex/progress_8hpp__dep__incl.pdf and b/latex/progress_8hpp__dep__incl.pdf differ diff --git a/latex/refman.aux b/latex/refman.aux index b64755e59..85d36d87f 100644 --- a/latex/refman.aux +++ b/latex/refman.aux @@ -1294,7 +1294,7 @@ \@writefile{toc}{\contentsline {subsubsection}{\numberline {8.26.3.7}get\_support\_fun()}{153}{subsubsection.8.26.3.7}\protected@file@percent } \newlabel{class_flock_a5ddef5ec4a7b150a354db11bb6b0c593}{{8.26.3.7}{153}{\texorpdfstring {get\_support\_fun()}{get\_support\_fun()}}{subsubsection.8.26.3.7}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {8.26.3.8}init()}{153}{subsubsection.8.26.3.8}\protected@file@percent } -\newlabel{class_flock_a275193d11c7ce3b8ec5dc18c8fab3e2e}{{8.26.3.8}{153}{\texorpdfstring {init()}{init()}}{subsubsection.8.26.3.8}{}} +\newlabel{class_flock_a7bcad6b3c794cefc1b4bb613d13ddf71}{{8.26.3.8}{153}{\texorpdfstring {init()}{init()}}{subsubsection.8.26.3.8}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {8.26.3.9}likelihood\_joint()}{153}{subsubsection.8.26.3.9}\protected@file@percent } \newlabel{class_flock_a55cf3311be1c2129466a666bbe90a3fb}{{8.26.3.9}{153}{\texorpdfstring {likelihood\_joint()}{likelihood\_joint()}}{table.8.23}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {8.26.3.10}nfuns()}{154}{subsubsection.8.26.3.10}\protected@file@percent } @@ -1412,7 +1412,7 @@ \@writefile{toc}{\contentsline {subsubsection}{\numberline 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Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_norm\_const@{get\_norm\_const}|hyperpage}{183} \indexentry{get\_norm\_const@{get\_norm\_const}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{183} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset@{get\_pset}|hyperpage}{183} -\indexentry{get\_pset@{get\_pset}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{183} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset@{get\_pset}|hyperpage}{184} +\indexentry{get\_pset@{get\_pset}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{184} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_arrays@{get\_pset\_arrays}|hyperpage}{184} \indexentry{get\_pset\_arrays@{get\_pset\_arrays}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{184} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_probs@{get\_pset\_probs}|hyperpage}{184} \indexentry{get\_pset\_probs@{get\_pset\_probs}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{184} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_stats@{get\_pset\_stats}|hyperpage}{184} \indexentry{get\_pset\_stats@{get\_pset\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{184} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_stats@{get\_pset\_stats}|hyperpage}{184} -\indexentry{get\_pset\_stats@{get\_pset\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{184} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rengine@{get\_rengine}|hyperpage}{184} -\indexentry{get\_rengine@{get\_rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{184} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_pset\_stats@{get\_pset\_stats}|hyperpage}{185} +\indexentry{get\_pset\_stats@{get\_pset\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{185} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rengine@{get\_rengine}|hyperpage}{185} +\indexentry{get\_rengine@{get\_rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{185} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rules@{get\_rules}|hyperpage}{185} \indexentry{get\_rules@{get\_rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{185} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_rules\_dyn@{get\_rules\_dyn}|hyperpage}{185} \indexentry{get\_rules\_dyn@{get\_rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{185} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_stats\_support@{get\_stats\_support}|hyperpage}{185} -\indexentry{get\_stats\_support@{get\_stats\_support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{185} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_stats\_target@{get\_stats\_target}|hyperpage}{185} -\indexentry{get\_stats\_target@{get\_stats\_target}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{185} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_support\_fun@{get\_support\_fun}|hyperpage}{185} -\indexentry{get\_support\_fun@{get\_support\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{185} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}|hyperpage}{186} -\indexentry{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{186} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}|hyperpage}{186} -\indexentry{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{186} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}|hyperpage}{186} -\indexentry{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{186} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_stats\_support@{get\_stats\_support}|hyperpage}{186} +\indexentry{get\_stats\_support@{get\_stats\_support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{186} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_stats\_target@{get\_stats\_target}|hyperpage}{186} +\indexentry{get\_stats\_target@{get\_stats\_target}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{186} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!get\_support\_fun@{get\_support\_fun}|hyperpage}{186} +\indexentry{get\_support\_fun@{get\_support\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{186} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}|hyperpage}{186} \indexentry{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{186} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}|hyperpage}{187} +\indexentry{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{187} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}|hyperpage}{187} +\indexentry{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{187} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood@{likelihood}|hyperpage}{187} +\indexentry{likelihood@{likelihood}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{187} \indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!likelihood\_total@{likelihood\_total}|hyperpage}{187} \indexentry{likelihood\_total@{likelihood\_total}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{187} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nrules@{nrules}|hyperpage}{187} -\indexentry{nrules@{nrules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{187} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nrules\_dyn@{nrules\_dyn}|hyperpage}{187} -\indexentry{nrules\_dyn@{nrules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{187} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nterms@{nterms}|hyperpage}{187} -\indexentry{nterms@{nterms}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{187} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!operator=@{operator=}|hyperpage}{187} -\indexentry{operator=@{operator=}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{187} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!print@{print}|hyperpage}{188} -\indexentry{print@{print}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{188} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!print\_stats@{print\_stats}|hyperpage}{188} -\indexentry{print\_stats@{print\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{188} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!sample@{sample}|hyperpage}{188} -\indexentry{sample@{sample}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{188} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!sample@{sample}|hyperpage}{188} -\indexentry{sample@{sample}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{188} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_counters@{set\_counters}|hyperpage}{189} -\indexentry{set\_counters@{set\_counters}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{189} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rengine@{set\_rengine}|hyperpage}{189} -\indexentry{set\_rengine@{set\_rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{189} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rules@{set\_rules}|hyperpage}{189} -\indexentry{set\_rules@{set\_rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{189} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rules\_dyn@{set\_rules\_dyn}|hyperpage}{189} -\indexentry{set\_rules\_dyn@{set\_rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{189} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_seed@{set\_seed}|hyperpage}{189} -\indexentry{set\_seed@{set\_seed}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{189} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_transform\_model@{set\_transform\_model}|hyperpage}{190} -\indexentry{set\_transform\_model@{set\_transform\_model}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{190} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!size@{size}|hyperpage}{190} -\indexentry{size@{size}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{190} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!size\_unique@{size\_unique}|hyperpage}{190} -\indexentry{size\_unique@{size\_unique}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{190} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!store\_psets@{store\_psets}|hyperpage}{190} -\indexentry{store\_psets@{store\_psets}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{190} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!support\_size@{support\_size}|hyperpage}{191} -\indexentry{support\_size@{support\_size}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{191} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model@{transform\_model}|hyperpage}{191} -\indexentry{transform\_model@{transform\_model}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{191} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!arrays2support@{arrays2support}|hyperpage}{191} -\indexentry{arrays2support@{arrays2support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{191} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!counter\_fun@{counter\_fun}|hyperpage}{191} -\indexentry{counter\_fun@{counter\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{191} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!counters@{counters}|hyperpage}{191} -\indexentry{counters@{counters}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{191} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!delete\_counters@{delete\_counters}|hyperpage}{192} -\indexentry{delete\_counters@{delete\_counters}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{192} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!delete\_rengine@{delete\_rengine}|hyperpage}{192} -\indexentry{delete\_rengine@{delete\_rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{192} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!delete\_rules@{delete\_rules}|hyperpage}{192} -\indexentry{delete\_rules@{delete\_rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{192} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!delete\_rules\_dyn@{delete\_rules\_dyn}|hyperpage}{192} -\indexentry{delete\_rules\_dyn@{delete\_rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{192} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!first\_calc\_done@{first\_calc\_done}|hyperpage}{192} -\indexentry{first\_calc\_done@{first\_calc\_done}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{192} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!keys2support@{keys2support}|hyperpage}{193} -\indexentry{keys2support@{keys2support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{193} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!normalizing\_constants@{normalizing\_constants}|hyperpage}{193} -\indexentry{normalizing\_constants@{normalizing\_constants}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{193} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!params\_last@{params\_last}|hyperpage}{193} -\indexentry{params\_last@{params\_last}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{193} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!pset\_arrays@{pset\_arrays}|hyperpage}{193} -\indexentry{pset\_arrays@{pset\_arrays}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{193} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!pset\_probs@{pset\_probs}|hyperpage}{194} -\indexentry{pset\_probs@{pset\_probs}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{194} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!pset\_stats@{pset\_stats}|hyperpage}{194} -\indexentry{pset\_stats@{pset\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{194} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!rengine@{rengine}|hyperpage}{194} -\indexentry{rengine@{rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{194} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!rules@{rules}|hyperpage}{194} -\indexentry{rules@{rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{194} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!rules\_dyn@{rules\_dyn}|hyperpage}{195} -\indexentry{rules\_dyn@{rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{195} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_support@{stats\_support}|hyperpage}{195} -\indexentry{stats\_support@{stats\_support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{195} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_support\_n\_arrays@{stats\_support\_n\_arrays}|hyperpage}{195} -\indexentry{stats\_support\_n\_arrays@{stats\_support\_n\_arrays}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{195} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_target@{stats\_target}|hyperpage}{195} -\indexentry{stats\_target@{stats\_target}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{195} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!support\_fun@{support\_fun}|hyperpage}{196} -\indexentry{support\_fun@{support\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model\_fun@{transform\_model\_fun}|hyperpage}{196} -\indexentry{transform\_model\_fun@{transform\_model\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model\_term\_names@{transform\_model\_term\_names}|hyperpage}{196} -\indexentry{transform\_model\_term\_names@{transform\_model\_term\_names}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} -\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!with\_pset@{with\_pset}|hyperpage}{197} -\indexentry{with\_pset@{with\_pset}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{197} -\indexentry{NetCounterData@{NetCounterData}|hyperpage}{197} -\indexentry{NetCounterData@{NetCounterData}!NetCounterData@{NetCounterData}|hyperpage}{198} -\indexentry{NetCounterData@{NetCounterData}!NetCounterData@{NetCounterData}|hyperpage}{198} -\indexentry{NetCounterData@{NetCounterData}!NetCounterData@{NetCounterData}|hyperpage}{198} -\indexentry{NetCounterData@{NetCounterData}!NetCounterData@{NetCounterData}|hyperpage}{198} -\indexentry{NetCounterData@{NetCounterData}!````~NetCounterData@{$\sim$NetCounterData}|hyperpage}{198} -\indexentry{````~NetCounterData@{$\sim$NetCounterData}!NetCounterData@{NetCounterData}|hyperpage}{198} -\indexentry{NetCounterData@{NetCounterData}!indices@{indices}|hyperpage}{198} -\indexentry{indices@{indices}!NetCounterData@{NetCounterData}|hyperpage}{198} -\indexentry{NetCounterData@{NetCounterData}!numbers@{numbers}|hyperpage}{198} -\indexentry{numbers@{numbers}!NetCounterData@{NetCounterData}|hyperpage}{198} -\indexentry{NetworkData@{NetworkData}|hyperpage}{199} -\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{199} -\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{199} -\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{199} -\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{199} -\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{200} -\indexentry{NetworkData@{NetworkData}!NetworkData@{NetworkData}|hyperpage}{200} -\indexentry{NetworkData@{NetworkData}!````~NetworkData@{$\sim$NetworkData}|hyperpage}{200} -\indexentry{````~NetworkData@{$\sim$NetworkData}!NetworkData@{NetworkData}|hyperpage}{200} -\indexentry{NetworkData@{NetworkData}!directed@{directed}|hyperpage}{200} -\indexentry{directed@{directed}!NetworkData@{NetworkData}|hyperpage}{200} -\indexentry{NetworkData@{NetworkData}!vertex\_attr@{vertex\_attr}|hyperpage}{200} -\indexentry{vertex\_attr@{vertex\_attr}!NetworkData@{NetworkData}|hyperpage}{200} -\indexentry{Node@{Node}|hyperpage}{201} -\indexentry{Node@{Node}!Node@{Node}|hyperpage}{202} -\indexentry{Node@{Node}!Node@{Node}|hyperpage}{202} -\indexentry{Node@{Node}!Node@{Node}|hyperpage}{202} -\indexentry{Node@{Node}!Node@{Node}|hyperpage}{202} -\indexentry{Node@{Node}!Node@{Node}|hyperpage}{203} -\indexentry{Node@{Node}!Node@{Node}|hyperpage}{203} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nrules@{nrules}|hyperpage}{188} +\indexentry{nrules@{nrules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{188} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nrules\_dyn@{nrules\_dyn}|hyperpage}{188} +\indexentry{nrules\_dyn@{nrules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{188} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!nterms@{nterms}|hyperpage}{188} +\indexentry{nterms@{nterms}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{188} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!operator=@{operator=}|hyperpage}{188} +\indexentry{operator=@{operator=}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{188} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!print@{print}|hyperpage}{189} +\indexentry{print@{print}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{189} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!print\_stats@{print\_stats}|hyperpage}{189} +\indexentry{print\_stats@{print\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{189} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!sample@{sample}|hyperpage}{189} +\indexentry{sample@{sample}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{189} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!sample@{sample}|hyperpage}{189} +\indexentry{sample@{sample}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{189} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_counters@{set\_counters}|hyperpage}{190} +\indexentry{set\_counters@{set\_counters}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{190} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rengine@{set\_rengine}|hyperpage}{190} +\indexentry{set\_rengine@{set\_rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{190} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rules@{set\_rules}|hyperpage}{190} +\indexentry{set\_rules@{set\_rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{190} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_rules\_dyn@{set\_rules\_dyn}|hyperpage}{190} +\indexentry{set\_rules\_dyn@{set\_rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{190} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_seed@{set\_seed}|hyperpage}{191} +\indexentry{set\_seed@{set\_seed}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{191} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!set\_transform\_model@{set\_transform\_model}|hyperpage}{191} +\indexentry{set\_transform\_model@{set\_transform\_model}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{191} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!size@{size}|hyperpage}{191} +\indexentry{size@{size}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{191} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!size\_unique@{size\_unique}|hyperpage}{192} +\indexentry{size\_unique@{size\_unique}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{192} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!store\_psets@{store\_psets}|hyperpage}{192} +\indexentry{store\_psets@{store\_psets}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{192} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!support\_size@{support\_size}|hyperpage}{192} +\indexentry{support\_size@{support\_size}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{192} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model@{transform\_model}|hyperpage}{192} +\indexentry{transform\_model@{transform\_model}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{192} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!arrays2support@{arrays2support}|hyperpage}{193} +\indexentry{arrays2support@{arrays2support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{193} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!counter\_fun@{counter\_fun}|hyperpage}{193} +\indexentry{counter\_fun@{counter\_fun}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{193} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!counters@{counters}|hyperpage}{193} +\indexentry{counters@{counters}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{193} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!delete\_counters@{delete\_counters}|hyperpage}{193} 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+\indexentry{delete\_rules@{delete\_rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{194} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!delete\_rules\_dyn@{delete\_rules\_dyn}|hyperpage}{194} +\indexentry{delete\_rules\_dyn@{delete\_rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{194} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!first\_calc\_done@{first\_calc\_done}|hyperpage}{194} +\indexentry{first\_calc\_done@{first\_calc\_done}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{194} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!keys2support@{keys2support}|hyperpage}{194} +\indexentry{keys2support@{keys2support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{194} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!normalizing\_constants@{normalizing\_constants}|hyperpage}{194} +\indexentry{normalizing\_constants@{normalizing\_constants}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{194} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!params\_last@{params\_last}|hyperpage}{195} +\indexentry{params\_last@{params\_last}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{195} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!pset\_arrays@{pset\_arrays}|hyperpage}{195} +\indexentry{pset\_arrays@{pset\_arrays}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{195} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!pset\_probs@{pset\_probs}|hyperpage}{195} +\indexentry{pset\_probs@{pset\_probs}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{195} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!pset\_stats@{pset\_stats}|hyperpage}{195} +\indexentry{pset\_stats@{pset\_stats}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{195} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!rengine@{rengine}|hyperpage}{196} +\indexentry{rengine@{rengine}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!rules@{rules}|hyperpage}{196} +\indexentry{rules@{rules}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!rules\_dyn@{rules\_dyn}|hyperpage}{196} +\indexentry{rules\_dyn@{rules\_dyn}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!stats\_support@{stats\_support}|hyperpage}{196} +\indexentry{stats\_support@{stats\_support}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{196} 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Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!transform\_model\_term\_names@{transform\_model\_term\_names}|hyperpage}{198} +\indexentry{transform\_model\_term\_names@{transform\_model\_term\_names}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{198} +\indexentry{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}!with\_pset@{with\_pset}|hyperpage}{198} +\indexentry{with\_pset@{with\_pset}!Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$@{Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}|hyperpage}{198} 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+\indexentry{STATSCOUNTER\_TEMPLATE@{STATSCOUNTER\_TEMPLATE}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{333} +\indexentry{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!STATSCOUNTER\_TEMPLATE@{STATSCOUNTER\_TEMPLATE}|hyperpage}{333} +\indexentry{STATSCOUNTER\_TEMPLATE@{STATSCOUNTER\_TEMPLATE}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{333} +\indexentry{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!counter@{counter}|hyperpage}{333} +\indexentry{counter@{counter}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{333} +\indexentry{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!counter\_deleted@{counter\_deleted}|hyperpage}{334} +\indexentry{counter\_deleted@{counter\_deleted}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{334} +\indexentry{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!counters@{counters}|hyperpage}{334} +\indexentry{counters@{counters}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{334} +\indexentry{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!counters\_@{counters\_}|hyperpage}{334} +\indexentry{counters\_@{counters\_}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{334} +\indexentry{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!current\_stats@{current\_stats}|hyperpage}{334} +\indexentry{current\_stats@{current\_stats}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{334} +\indexentry{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!EmptyArray@{EmptyArray}|hyperpage}{334} +\indexentry{EmptyArray@{EmptyArray}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{334} +\indexentry{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!f\_@{f\_}|hyperpage}{335} +\indexentry{f\_@{f\_}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{335} +\indexentry{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!j@{j}|hyperpage}{335} +\indexentry{j@{j}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{335} +\indexentry{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!return@{return}|hyperpage}{335} +\indexentry{return@{return}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}|hyperpage}{335} +\indexentry{include/barry/support-\/bones.hpp@{include/barry/support-\/bones.hpp}|hyperpage}{335} +\indexentry{include/barry/support-\/meat.hpp@{include/barry/support-\/meat.hpp}|hyperpage}{336} +\indexentry{support-\/meat.hpp@{support-\/meat.hpp}!BARRY\_SUPPORT\_MEAT\_HPP@{BARRY\_SUPPORT\_MEAT\_HPP}|hyperpage}{336} +\indexentry{BARRY\_SUPPORT\_MEAT\_HPP@{BARRY\_SUPPORT\_MEAT\_HPP}!support-\/meat.hpp@{support-\/meat.hpp}|hyperpage}{336} +\indexentry{include/barry/typedefs.hpp@{include/barry/typedefs.hpp}|hyperpage}{337} +\indexentry{typedefs.hpp@{typedefs.hpp}!Col\_type@{Col\_type}|hyperpage}{339} +\indexentry{Col\_type@{Col\_type}!typedefs.hpp@{typedefs.hpp}|hyperpage}{339} +\indexentry{typedefs.hpp@{typedefs.hpp}!Counter\_fun\_type@{Counter\_fun\_type}|hyperpage}{339} +\indexentry{Counter\_fun\_type@{Counter\_fun\_type}!typedefs.hpp@{typedefs.hpp}|hyperpage}{339} +\indexentry{typedefs.hpp@{typedefs.hpp}!Counts\_type@{Counts\_type}|hyperpage}{339} +\indexentry{Counts\_type@{Counts\_type}!typedefs.hpp@{typedefs.hpp}|hyperpage}{339} +\indexentry{typedefs.hpp@{typedefs.hpp}!Hasher\_fun\_type@{Hasher\_fun\_type}|hyperpage}{339} +\indexentry{Hasher\_fun\_type@{Hasher\_fun\_type}!typedefs.hpp@{typedefs.hpp}|hyperpage}{339} +\indexentry{typedefs.hpp@{typedefs.hpp}!MapVec\_type@{MapVec\_type}|hyperpage}{340} +\indexentry{MapVec\_type@{MapVec\_type}!typedefs.hpp@{typedefs.hpp}|hyperpage}{340} +\indexentry{typedefs.hpp@{typedefs.hpp}!Row\_type@{Row\_type}|hyperpage}{340} +\indexentry{Row\_type@{Row\_type}!typedefs.hpp@{typedefs.hpp}|hyperpage}{340} +\indexentry{typedefs.hpp@{typedefs.hpp}!Rule\_fun\_type@{Rule\_fun\_type}|hyperpage}{340} +\indexentry{Rule\_fun\_type@{Rule\_fun\_type}!typedefs.hpp@{typedefs.hpp}|hyperpage}{340} +\indexentry{typedefs.hpp@{typedefs.hpp}!sort\_array@{sort\_array}|hyperpage}{340} +\indexentry{sort\_array@{sort\_array}!typedefs.hpp@{typedefs.hpp}|hyperpage}{340} +\indexentry{typedefs.hpp@{typedefs.hpp}!vec\_equal@{vec\_equal}|hyperpage}{341} +\indexentry{vec\_equal@{vec\_equal}!typedefs.hpp@{typedefs.hpp}|hyperpage}{341} +\indexentry{typedefs.hpp@{typedefs.hpp}!vec\_equal\_approx@{vec\_equal\_approx}|hyperpage}{341} +\indexentry{vec\_equal\_approx@{vec\_equal\_approx}!typedefs.hpp@{typedefs.hpp}|hyperpage}{341} +\indexentry{typedefs.hpp@{typedefs.hpp}!vec\_inner\_prod@{vec\_inner\_prod}|hyperpage}{341} +\indexentry{vec\_inner\_prod@{vec\_inner\_prod}!typedefs.hpp@{typedefs.hpp}|hyperpage}{341} +\indexentry{typedefs.hpp@{typedefs.hpp}!vec\_inner\_prod@{vec\_inner\_prod}|hyperpage}{342} +\indexentry{vec\_inner\_prod@{vec\_inner\_prod}!typedefs.hpp@{typedefs.hpp}|hyperpage}{342} +\indexentry{README.md@{README.md}|hyperpage}{342} diff --git a/latex/refman.ilg b/latex/refman.ilg index c40a414a9..299d03d81 100644 --- a/latex/refman.ilg +++ b/latex/refman.ilg @@ -1,6 +1,6 @@ This is makeindex, version 2.15 [TeX Live 2020] (kpathsea + Thai support). -Scanning input file refman.idx......done (2385 entries accepted, 0 rejected). -Sorting entries.........................done (32042 comparisons). -Generating output file refman.ind......done (2972 lines written, 0 warnings). +Scanning input file refman.idx......done (2217 entries accepted, 0 rejected). +Sorting entries.....................done (26425 comparisons). +Generating output file refman.ind.....done (2861 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. diff --git a/latex/refman.ind b/latex/refman.ind index bbd2bcb7b..97ed683e8 100644 --- a/latex/refman.ind +++ b/latex/refman.ind @@ -51,33 +51,31 @@ \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{180} \item {$\sim$NetCounterData} - \subitem {NetCounterData}, \hyperpage{198} + \subitem {NetCounterData}, \hyperpage{199} \item {$\sim$NetworkData} - \subitem {NetworkData}, \hyperpage{200} + \subitem {NetworkData}, \hyperpage{202} \item {$\sim$Node} - \subitem {Node}, \hyperpage{203} + \subitem {Node}, \hyperpage{204} \item {$\sim$PhyloRuleDynData} - \subitem {PhyloRuleDynData}, \hyperpage{212} + \subitem {PhyloRuleDynData}, \hyperpage{213} \item {$\sim$PowerSet} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{215} + \hyperpage{216} \item {$\sim$Progress} - \subitem {Progress}, \hyperpage{220} + \subitem {Progress}, \hyperpage{221} \item {$\sim$Rule} - \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{222} + \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{223} \item {$\sim$Rules} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{225} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{226} \item {$\sim$StatsCounter} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{230} + \hyperpage{231} \item {$\sim$Support} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{235} + \hyperpage{236} \indexspace - \item {a} - \subitem {model-\/meat.hpp}, \hyperpage{314} \item {active} \subitem {Cell$<$ Cell\_Type $>$}, \hyperpage{125} \item {add} @@ -92,13 +90,13 @@ \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{180, 181} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{230} + \hyperpage{231} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{235} + \hyperpage{236} \item {add\_data} \subitem {Flock}, \hyperpage{151} \item {add\_dims} - \subitem {counters-\/meat.hpp}, \hyperpage{281} + \subitem {counters-\/meat.hpp}, \hyperpage{283} \item {add\_hash} \subitem {Counters$<$ Array\_Type, Data\_Type $>$}, \hyperpage{136} \item {add\_hasher} @@ -108,28 +106,28 @@ \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{181} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{215, 216} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{226} + \hyperpage{216, 217} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{227} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{235, 236} + \hyperpage{236, 237} \item {add\_rule\_dyn} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{181, 182} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{236} + \hyperpage{237} \item {annotations} - \subitem {Node}, \hyperpage{204} + \subitem {Node}, \hyperpage{205} \item {Array} \subitem {ConstBArrayRowIter$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{127} \item {array} - \subitem {Node}, \hyperpage{204} + \subitem {Node}, \hyperpage{205} \subitem {Phylo rules}, \hyperpage{44} \item {arrays} - \subitem {Node}, \hyperpage{204} + \subitem {Node}, \hyperpage{206} \item {arrays2support} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{191} + \hyperpage{193} \item {AS\_ONE} \subitem {EXISTS}, \hyperpage{57} \item {as\_vector} @@ -138,7 +136,7 @@ \subitem {EXISTS}, \hyperpage{57} \item {at} \subitem {Phylo rules}, \hyperpage{39} - \subitem {PhyloCounterData}, \hyperpage{209} + \subitem {PhyloCounterData}, \hyperpage{210} \indexspace @@ -191,26 +189,26 @@ \subitem {zero\_col}, \hyperpage{72} \subitem {zero\_row}, \hyperpage{72} \item {barray-\/meat-\/operators.hpp} - \subitem {BARRAY\_TEMPLATE}, \hyperpage{246--248} - \subitem {BARRAY\_TEMPLATE\_ARGS}, \hyperpage{247}, \hyperpage{249} - \subitem {BARRAY\_TYPE}, \hyperpage{247}, \hyperpage{249} - \subitem {COL}, \hyperpage{247} - \subitem {for}, \hyperpage{249} - \subitem {operator()}, \hyperpage{249} - \subitem {rhs}, \hyperpage{249} - \subitem {ROW}, \hyperpage{247} - \subitem {this}, \hyperpage{250} + \subitem {BARRAY\_TEMPLATE}, \hyperpage{248--250} + \subitem {BARRAY\_TEMPLATE\_ARGS}, \hyperpage{249}, \hyperpage{251} + \subitem {BARRAY\_TYPE}, \hyperpage{249}, \hyperpage{251} + \subitem {COL}, \hyperpage{249} + \subitem {for}, \hyperpage{251} + \subitem {operator()}, \hyperpage{251} + \subitem {rhs}, \hyperpage{251} + \subitem {ROW}, \hyperpage{249} + \subitem {this}, \hyperpage{252} \item {barray-\/meat.hpp} - \subitem {COL}, \hyperpage{250} - \subitem {ROW}, \hyperpage{251} + \subitem {COL}, \hyperpage{252} + \subitem {ROW}, \hyperpage{253} \item {BARRAY\_TEMPLATE} - \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{246--248} + \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{248--250} \item {BARRAY\_TEMPLATE\_ARGS} - \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{247}, - \hyperpage{249} + \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{249}, + \hyperpage{251} \item {BARRAY\_TYPE} - \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{247}, - \hyperpage{249} + \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{249}, + \hyperpage{251} \item {BArrayCell} \subitem {BArrayCell$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{74} \item {BArrayCell$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{74} @@ -297,19 +295,19 @@ \subitem {zero\_col}, \hyperpage{94} \subitem {zero\_row}, \hyperpage{94} \item {barraydense-\/meat-\/operators.hpp} - \subitem {BDENSE\_TEMPLATE}, \hyperpage{253}, \hyperpage{255} - \subitem {BDENSE\_TEMPLATE\_ARGS}, \hyperpage{253}, \hyperpage{255} - \subitem {BDENSE\_TYPE}, \hyperpage{254}, \hyperpage{256} - \subitem {COL}, \hyperpage{254} - \subitem {POS}, \hyperpage{254} - \subitem {POS\_N}, \hyperpage{254} - \subitem {ROW}, \hyperpage{254} - \item {barraydense-\/meat.hpp} + \subitem {BDENSE\_TEMPLATE}, \hyperpage{255}, \hyperpage{257} + \subitem {BDENSE\_TEMPLATE\_ARGS}, \hyperpage{255}, \hyperpage{257} + \subitem {BDENSE\_TYPE}, \hyperpage{256}, \hyperpage{258} \subitem {COL}, \hyperpage{256} \subitem {POS}, \hyperpage{256} - \subitem {POS\_N}, \hyperpage{257} - \subitem {ROW}, \hyperpage{257} - \subitem {ZERO\_CELL}, \hyperpage{257} + \subitem {POS\_N}, \hyperpage{256} + \subitem {ROW}, \hyperpage{256} + \item {barraydense-\/meat.hpp} + \subitem {COL}, \hyperpage{258} + \subitem {POS}, \hyperpage{258} + \subitem {POS\_N}, \hyperpage{259} + \subitem {ROW}, \hyperpage{259} + \subitem {ZERO\_CELL}, \hyperpage{259} \item {BArrayDenseCell} \subitem {BArrayDenseCell$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{97} @@ -334,9 +332,9 @@ \subitem {operator=}, \hyperpage{98} \subitem {operator==}, \hyperpage{99} \item {barraydensecell-\/bones.hpp} - \subitem {POS}, \hyperpage{258} + \subitem {POS}, \hyperpage{260} \item {barraydensecell-\/meat.hpp} - \subitem {POS}, \hyperpage{258} + \subitem {POS}, \hyperpage{260} \item {BArrayDenseCell\_const$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{100} \subitem {BArrayDenseCol$<$ Cell\_Type, Data\_Type $>$}, @@ -363,9 +361,9 @@ \subitem {operator()}, \hyperpage{101} \subitem {size}, \hyperpage{101} \item {barraydensecol-\/bones.hpp} - \subitem {POS}, \hyperpage{259} - \subitem {POS\_N}, \hyperpage{259} - \subitem {ZERO\_CELL}, \hyperpage{260} + \subitem {POS}, \hyperpage{261} + \subitem {POS\_N}, \hyperpage{261} + \subitem {ZERO\_CELL}, \hyperpage{262} \item {BArrayDenseCol\_const} \subitem {BArrayDenseCol\_const$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{103} @@ -398,9 +396,9 @@ \subitem {operator()}, \hyperpage{106} \subitem {size}, \hyperpage{106} \item {barraydenserow-\/bones.hpp} - \subitem {POS}, \hyperpage{261} - \subitem {POS\_N}, \hyperpage{261} - \subitem {ZERO\_CELL}, \hyperpage{261} + \subitem {POS}, \hyperpage{263} + \subitem {POS\_N}, \hyperpage{263} + \subitem {ZERO\_CELL}, \hyperpage{263} \item {BArrayDenseRow\_const} \subitem {BArrayDenseRow\_const$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{107} @@ -431,9 +429,9 @@ \subitem {operator=}, \hyperpage{111} \subitem {operator==}, \hyperpage{111} \item {barrayrow-\/meat.hpp} - \subitem {BROW\_TEMPLATE}, \hyperpage{262, 263} - \subitem {BROW\_TEMPLATE\_ARGS}, \hyperpage{262} - \subitem {BROW\_TYPE}, \hyperpage{262} + \subitem {BROW\_TEMPLATE}, \hyperpage{264, 265} + \subitem {BROW\_TEMPLATE\_ARGS}, \hyperpage{264} + \subitem {BROW\_TYPE}, \hyperpage{264} \item {BArrayRow\_const} \subitem {BArrayRow\_const$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{112} @@ -488,76 +486,79 @@ \subitem {size}, \hyperpage{121} \item {barry}, \hyperpage{55} \item {barry-\/configuration.hpp} - \subitem {BARRY\_CHECK\_SUPPORT}, \hyperpage{265} - \subitem {BARRY\_ISFINITE}, \hyperpage{265} - \subitem {BARRY\_MAX\_NUM\_ELEMENTS}, \hyperpage{265} - \subitem {BARRY\_SAFE\_EXP}, \hyperpage{265} - \subitem {Map}, \hyperpage{266} - \subitem {printf\_barry}, \hyperpage{265} + \subitem {BARRY\_CHECK\_SUPPORT}, \hyperpage{267} + \subitem {BARRY\_ISFINITE}, \hyperpage{267} + \subitem {BARRY\_MAX\_NUM\_ELEMENTS}, \hyperpage{267} + \subitem {BARRY\_SAFE\_EXP}, \hyperpage{267} + \subitem {Map}, \hyperpage{268} + \subitem {printf\_barry}, \hyperpage{267} \item {barry-\/debug.hpp} - \subitem {BARRY\_DEBUG\_LEVEL}, \hyperpage{266} + \subitem {BARRY\_DEBUG\_LEVEL}, \hyperpage{268} \item {barry-\/macros.hpp} - \subitem {BARRY\_ONE}, \hyperpage{267} - \subitem {BARRY\_ONE\_DENSE}, \hyperpage{267} - \subitem {BARRY\_UNUSED}, \hyperpage{267} - \subitem {BARRY\_ZERO}, \hyperpage{268} - \subitem {BARRY\_ZERO\_DENSE}, \hyperpage{268} + \subitem {BARRY\_NCORES\_ARG}, \hyperpage{269} + \subitem {BARRY\_ONE}, \hyperpage{269} + \subitem {BARRY\_ONE\_DENSE}, \hyperpage{269} + \subitem {BARRY\_UNUSED}, \hyperpage{270} + \subitem {BARRY\_ZERO}, \hyperpage{270} + \subitem {BARRY\_ZERO\_DENSE}, \hyperpage{270} \item {barry.hpp} - \subitem {BARRY\_HPP}, \hyperpage{269} - \subitem {BARRY\_VERSION}, \hyperpage{270} - \subitem {BARRY\_VERSION\_MAYOR}, \hyperpage{270} - \subitem {BARRY\_VERSION\_MINOR}, \hyperpage{270} - \subitem {COUNTER\_FUNCTION}, \hyperpage{270} - \subitem {COUNTER\_LAMBDA}, \hyperpage{270} - \subitem {RULE\_FUNCTION}, \hyperpage{271} - \subitem {RULE\_LAMBDA}, \hyperpage{271} + \subitem {BARRY\_HPP}, \hyperpage{272} + \subitem {BARRY\_VERSION}, \hyperpage{272} + \subitem {BARRY\_VERSION\_MAYOR}, \hyperpage{272} + \subitem {BARRY\_VERSION\_MINOR}, \hyperpage{272} + \subitem {COUNTER\_FUNCTION}, \hyperpage{272} + \subitem {COUNTER\_LAMBDA}, \hyperpage{272} + \subitem {RULE\_FUNCTION}, \hyperpage{273} + \subitem {RULE\_LAMBDA}, \hyperpage{273} \item {barry::counters}, \hyperpage{55} \item {barry::counters::network}, \hyperpage{56} \item {BARRY\_CHECK\_SUPPORT} - \subitem {barry-\/configuration.hpp}, \hyperpage{265} + \subitem {barry-\/configuration.hpp}, \hyperpage{267} \item {BARRY\_DEBUG\_LEVEL} - \subitem {barry-\/debug.hpp}, \hyperpage{266} + \subitem {barry-\/debug.hpp}, \hyperpage{268} \item {BARRY\_HPP} - \subitem {barry.hpp}, \hyperpage{269} + \subitem {barry.hpp}, \hyperpage{272} \item {BARRY\_ISFINITE} - \subitem {barry-\/configuration.hpp}, \hyperpage{265} + \subitem {barry-\/configuration.hpp}, \hyperpage{267} \item {BARRY\_MAX\_NUM\_ELEMENTS} - \subitem {barry-\/configuration.hpp}, \hyperpage{265} + \subitem {barry-\/configuration.hpp}, \hyperpage{267} + \item {BARRY\_NCORES\_ARG} + \subitem {barry-\/macros.hpp}, \hyperpage{269} \item {BARRY\_ONE} - \subitem {barry-\/macros.hpp}, \hyperpage{267} + \subitem {barry-\/macros.hpp}, \hyperpage{269} \item {BARRY\_ONE\_DENSE} - \subitem {barry-\/macros.hpp}, \hyperpage{267} + \subitem {barry-\/macros.hpp}, \hyperpage{269} \item {BARRY\_PROGRESS\_BAR\_WIDTH} - \subitem {progress.hpp}, \hyperpage{344} + \subitem {progress.hpp}, \hyperpage{328} \item {BARRY\_SAFE\_EXP} - \subitem {barry-\/configuration.hpp}, \hyperpage{265} + \subitem {barry-\/configuration.hpp}, \hyperpage{267} \item {BARRY\_SUPPORT\_MEAT\_HPP} - \subitem {support-\/meat.hpp}, \hyperpage{352} + \subitem {support-\/meat.hpp}, \hyperpage{336} \item {BARRY\_UNUSED} - \subitem {barry-\/macros.hpp}, \hyperpage{267} + \subitem {barry-\/macros.hpp}, \hyperpage{270} \item {BARRY\_VERSION} - \subitem {barry.hpp}, \hyperpage{270} + \subitem {barry.hpp}, \hyperpage{272} \item {BARRY\_VERSION\_MAYOR} - \subitem {barry.hpp}, \hyperpage{270} + \subitem {barry.hpp}, \hyperpage{272} \item {BARRY\_VERSION\_MINOR} - \subitem {barry.hpp}, \hyperpage{270} + \subitem {barry.hpp}, \hyperpage{272} \item {BARRY\_ZERO} - \subitem {barry-\/macros.hpp}, \hyperpage{268} + \subitem {barry-\/macros.hpp}, \hyperpage{270} \item {BARRY\_ZERO\_DENSE} - \subitem {barry-\/macros.hpp}, \hyperpage{268} + \subitem {barry-\/macros.hpp}, \hyperpage{270} \item {BARRY\_ZERO\_NETWORK} - \subitem {network.hpp}, \hyperpage{296} + \subitem {network.hpp}, \hyperpage{298} \item {BARRY\_ZERO\_NETWORK\_DENSE} - \subitem {network.hpp}, \hyperpage{296} + \subitem {network.hpp}, \hyperpage{298} \item {BDENSE\_TEMPLATE} - \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{253}, - \hyperpage{255} + \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{255}, + \hyperpage{257} \item {BDENSE\_TEMPLATE\_ARGS} - \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{253}, - \hyperpage{255} + \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{255}, + \hyperpage{257} \item {BDENSE\_TYPE} - \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{254}, - \hyperpage{256} + \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{256}, + \hyperpage{258} \item {begin} \subitem {BArrayDenseCol$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{101} @@ -571,29 +572,29 @@ \hyperpage{115} \subitem {BArrayVector\_const$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{119} - \subitem {PhyloCounterData}, \hyperpage{209} + \subitem {PhyloCounterData}, \hyperpage{210} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{216} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{226} + \hyperpage{217} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{227} \item {blengths} - \subitem {NodeData}, \hyperpage{207} + \subitem {NodeData}, \hyperpage{209} \item {BOTH} \subitem {CHECK}, \hyperpage{56} \subitem {EXISTS}, \hyperpage{57} \item {BROW\_TEMPLATE} - \subitem {barrayrow-\/meat.hpp}, \hyperpage{262, 263} + \subitem {barrayrow-\/meat.hpp}, \hyperpage{264, 265} \item {BROW\_TEMPLATE\_ARGS} - \subitem {barrayrow-\/meat.hpp}, \hyperpage{262} + \subitem {barrayrow-\/meat.hpp}, \hyperpage{264} \item {BROW\_TYPE} - \subitem {barrayrow-\/meat.hpp}, \hyperpage{262} + \subitem {barrayrow-\/meat.hpp}, \hyperpage{264} \indexspace \item {calc} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{216} + \hyperpage{217} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{236} + \hyperpage{237} \item {calc\_reduced\_sequence} \subitem {Geese}, \hyperpage{164} \item {calc\_sequence} @@ -614,7 +615,7 @@ \item {Cell\_const$<$ Cell\_Type $>$}, \hyperpage{126} \item {change\_stats} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{240} + \hyperpage{241} \item {CHECK}, \hyperpage{56} \subitem {BOTH}, \hyperpage{56} \subitem {NONE}, \hyperpage{56} @@ -625,18 +626,18 @@ \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{83} \subitem {FreqTable$<$ T $>$}, \hyperpage{158} - \subitem {statscounter-\/meat.hpp}, \hyperpage{347} + \subitem {statscounter-\/meat.hpp}, \hyperpage{331} \item {COL} - \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{247} - \subitem {barray-\/meat.hpp}, \hyperpage{250} - \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{254} - \subitem {barraydense-\/meat.hpp}, \hyperpage{256} + \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{249} + \subitem {barray-\/meat.hpp}, \hyperpage{252} + \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{256} + \subitem {barraydense-\/meat.hpp}, \hyperpage{258} \item {col} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{63} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{84} \item {Col\_type} - \subitem {typedefs.hpp}, \hyperpage{355} + \subitem {typedefs.hpp}, \hyperpage{339} \item {colnames} \subitem {Flock}, \hyperpage{152} \subitem {Geese}, \hyperpage{165} @@ -661,43 +662,41 @@ \subitem {iter}, \hyperpage{128} \item {coordiantes\_n\_free} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{240} + \hyperpage{241} \item {coordiantes\_n\_locked} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{241} + \hyperpage{242} \item {coordinates\_free} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{218} + \hyperpage{219} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{241} + \hyperpage{242} \item {coordinates\_locked} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{218} + \hyperpage{219} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{241} + \hyperpage{242} \item {count} \subitem {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{131} \item {count\_all} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{230} + \hyperpage{231} \item {count\_current} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{231} + \hyperpage{232} \item {count\_fun} \subitem {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{132} - \subitem {counters-\/meat.hpp}, \hyperpage{276} + \subitem {counters-\/meat.hpp}, \hyperpage{278} \item {count\_fun\_} - \subitem {counters-\/meat.hpp}, \hyperpage{281} - \subitem {model-\/meat.hpp}, \hyperpage{314} + \subitem {counters-\/meat.hpp}, \hyperpage{283} \item {count\_init} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{231} + \hyperpage{232} \item {Counter} \subitem {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{130} \item {counter} - \subitem {counters-\/meat.hpp}, \hyperpage{282} - \subitem {model-\/meat.hpp}, \hyperpage{314} - \subitem {statscounter-\/meat.hpp}, \hyperpage{349} + \subitem {counters-\/meat.hpp}, \hyperpage{284} + \subitem {statscounter-\/meat.hpp}, \hyperpage{333} \item {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{128} \subitem {$\sim$Counter}, \hyperpage{130} \subitem {count}, \hyperpage{131} @@ -715,7 +714,7 @@ \subitem {operator=}, \hyperpage{131, 132} \subitem {set\_hasher}, \hyperpage{132} \item {counter\_} - \subitem {counters-\/meat.hpp}, \hyperpage{282} + \subitem {counters-\/meat.hpp}, \hyperpage{284} \item {counter\_absdiff} \subitem {Network counters}, \hyperpage{26} \item {counter\_co\_opt} @@ -725,41 +724,41 @@ \subitem {Counting}, \hyperpage{18} \subitem {Phylo counters}, \hyperpage{49} \item {counter\_css\_census01} - \subitem {network-\/css.hpp}, \hyperpage{289} + \subitem {network-\/css.hpp}, \hyperpage{291} \item {counter\_css\_census02} - \subitem {network-\/css.hpp}, \hyperpage{289} + \subitem {network-\/css.hpp}, \hyperpage{291} \item {counter\_css\_census03} - \subitem {network-\/css.hpp}, \hyperpage{289} + \subitem {network-\/css.hpp}, \hyperpage{291} \item {counter\_css\_census04} - \subitem {network-\/css.hpp}, \hyperpage{290} + \subitem {network-\/css.hpp}, \hyperpage{292} \item {counter\_css\_census05} - \subitem {network-\/css.hpp}, \hyperpage{290} + \subitem {network-\/css.hpp}, \hyperpage{292} \item {counter\_css\_census06} - \subitem {network-\/css.hpp}, \hyperpage{290} + \subitem {network-\/css.hpp}, \hyperpage{292} \item {counter\_css\_census07} - \subitem {network-\/css.hpp}, \hyperpage{290} + \subitem {network-\/css.hpp}, \hyperpage{292} \item {counter\_css\_census08} - \subitem {network-\/css.hpp}, \hyperpage{291} + \subitem {network-\/css.hpp}, \hyperpage{293} \item {counter\_css\_census09} - \subitem {network-\/css.hpp}, \hyperpage{291} + \subitem {network-\/css.hpp}, \hyperpage{293} \item {counter\_css\_census10} - \subitem {network-\/css.hpp}, \hyperpage{291} + \subitem {network-\/css.hpp}, \hyperpage{293} \item {counter\_css\_completely\_false\_recip\_comiss} - \subitem {network-\/css.hpp}, \hyperpage{291} + \subitem {network-\/css.hpp}, \hyperpage{293} \item {counter\_css\_completely\_false\_recip\_omiss} - \subitem {network-\/css.hpp}, \hyperpage{292} + \subitem {network-\/css.hpp}, \hyperpage{294} \item {counter\_css\_mixed\_recip} - \subitem {network-\/css.hpp}, \hyperpage{292} + \subitem {network-\/css.hpp}, \hyperpage{294} \item {counter\_css\_partially\_false\_recip\_commi} - \subitem {network-\/css.hpp}, \hyperpage{292} + \subitem {network-\/css.hpp}, \hyperpage{294} \item {counter\_css\_partially\_false\_recip\_omiss} - \subitem {network-\/css.hpp}, \hyperpage{293} + \subitem {network-\/css.hpp}, \hyperpage{295} \item {counter\_ctriads} \subitem {Network counters}, \hyperpage{27} \item {counter\_degree} \subitem {Network counters}, \hyperpage{27} \item {counter\_deleted} - \subitem {statscounter-\/meat.hpp}, \hyperpage{350} + \subitem {statscounter-\/meat.hpp}, \hyperpage{334} \item {counter\_density} \subitem {Network counters}, \hyperpage{27} \item {counter\_diff} @@ -770,11 +769,11 @@ \subitem {Network counters}, \hyperpage{28} \item {counter\_fun} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{191} + \hyperpage{193} \item {Counter\_fun\_type} - \subitem {typedefs.hpp}, \hyperpage{355} + \subitem {typedefs.hpp}, \hyperpage{339} \item {COUNTER\_FUNCTION} - \subitem {barry.hpp}, \hyperpage{270} + \subitem {barry.hpp}, \hyperpage{272} \item {counter\_gains} \subitem {Counting}, \hyperpage{18} \subitem {Phylo counters}, \hyperpage{49} @@ -799,7 +798,7 @@ \subitem {Counting}, \hyperpage{19} \subitem {Phylo counters}, \hyperpage{50} \item {COUNTER\_LAMBDA} - \subitem {barry.hpp}, \hyperpage{270} + \subitem {barry.hpp}, \hyperpage{272} \item {counter\_less\_than\_p\_prop\_genes\_changing} \subitem {Counting}, \hyperpage{19} \subitem {Phylo counters}, \hyperpage{50} @@ -872,10 +871,10 @@ \subitem {Counting}, \hyperpage{23} \subitem {Phylo counters}, \hyperpage{54} \item {COUNTER\_TEMPLATE} - \subitem {counters-\/meat.hpp}, \hyperpage{274}, - \hyperpage{276, 277} + \subitem {counters-\/meat.hpp}, \hyperpage{276}, + \hyperpage{278, 279} \item {COUNTER\_TEMPLATE\_ARGS} - \subitem {counters-\/meat.hpp}, \hyperpage{274} + \subitem {counters-\/meat.hpp}, \hyperpage{276} \item {counter\_transition} \subitem {Network counters}, \hyperpage{33} \item {counter\_transition\_formula} @@ -883,14 +882,14 @@ \item {counter\_ttriads} \subitem {Network counters}, \hyperpage{34} \item {COUNTER\_TYPE} - \subitem {counters-\/meat.hpp}, \hyperpage{275} + \subitem {counters-\/meat.hpp}, \hyperpage{277} \item {Counters} \subitem {Counters$<$ Array\_Type, Data\_Type $>$}, \hyperpage{134, 135} \item {counters} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{191} - \subitem {statscounter-\/meat.hpp}, \hyperpage{350} + \hyperpage{193} + \subitem {statscounter-\/meat.hpp}, \hyperpage{334} \item {Counters$<$ Array\_Type, Data\_Type $>$}, \hyperpage{134} \subitem {$\sim$Counters}, \hyperpage{135} \subitem {add\_counter}, \hyperpage{135, 136} @@ -903,56 +902,55 @@ \subitem {operator[]}, \hyperpage{138} \subitem {size}, \hyperpage{138} \item {counters-\/meat.hpp} - \subitem {add\_dims}, \hyperpage{281} - \subitem {count\_fun}, \hyperpage{276} - \subitem {count\_fun\_}, \hyperpage{281} - \subitem {counter}, \hyperpage{282} - \subitem {counter\_}, \hyperpage{282} - \subitem {COUNTER\_TEMPLATE}, \hyperpage{274}, \hyperpage{276, 277} - \subitem {COUNTER\_TEMPLATE\_ARGS}, \hyperpage{274} - \subitem {COUNTER\_TYPE}, \hyperpage{275} - \subitem {COUNTERS\_TEMPLATE}, \hyperpage{275}, - \hyperpage{277--279} - \subitem {COUNTERS\_TEMPLATE\_ARGS}, \hyperpage{275} - \subitem {COUNTERS\_TYPE}, \hyperpage{275} - \subitem {data}, \hyperpage{279} - \subitem {data\_}, \hyperpage{282} - \subitem {desc}, \hyperpage{279} - \subitem {desc\_}, \hyperpage{282} - \subitem {for}, \hyperpage{279} - \subitem {fun}, \hyperpage{283} - \subitem {fun\_}, \hyperpage{283} - \subitem {hasher}, \hyperpage{279, 280} - \subitem {hasher\_fun}, \hyperpage{280} - \subitem {hasher\_fun\_}, \hyperpage{283} - \subitem {i}, \hyperpage{283} - \subitem {if}, \hyperpage{280} - \subitem {init\_fun}, \hyperpage{281} - \subitem {init\_fun\_}, \hyperpage{284} - \subitem {j}, \hyperpage{284} - \subitem {name}, \hyperpage{281} - \subitem {name\_}, \hyperpage{284} - \subitem {noexcept}, \hyperpage{284} - \subitem {res}, \hyperpage{284} - \subitem {return}, \hyperpage{285} - \subitem {TMP\_HASHER\_CALL}, \hyperpage{275} + \subitem {add\_dims}, \hyperpage{283} + \subitem {count\_fun}, \hyperpage{278} + \subitem {count\_fun\_}, \hyperpage{283} + \subitem {counter}, \hyperpage{284} + \subitem {counter\_}, \hyperpage{284} + \subitem {COUNTER\_TEMPLATE}, \hyperpage{276}, \hyperpage{278, 279} + \subitem {COUNTER\_TEMPLATE\_ARGS}, \hyperpage{276} + \subitem {COUNTER\_TYPE}, \hyperpage{277} + \subitem {COUNTERS\_TEMPLATE}, \hyperpage{277}, + \hyperpage{279--281} + \subitem {COUNTERS\_TEMPLATE\_ARGS}, \hyperpage{277} + \subitem {COUNTERS\_TYPE}, \hyperpage{277} + \subitem {data}, \hyperpage{281} + \subitem {data\_}, \hyperpage{284} + \subitem {desc}, \hyperpage{281} + \subitem {desc\_}, \hyperpage{284} + \subitem {for}, \hyperpage{281} + \subitem {fun}, \hyperpage{285} + \subitem {fun\_}, \hyperpage{285} + \subitem {hasher}, \hyperpage{281, 282} + \subitem {hasher\_fun}, \hyperpage{282} + \subitem {hasher\_fun\_}, \hyperpage{285} + \subitem {i}, \hyperpage{285} + \subitem {if}, \hyperpage{282} + \subitem {init\_fun}, \hyperpage{283} + \subitem {init\_fun\_}, \hyperpage{286} + \subitem {j}, \hyperpage{286} + \subitem {name}, \hyperpage{283} + \subitem {name\_}, \hyperpage{286} + \subitem {noexcept}, \hyperpage{286} + \subitem {res}, \hyperpage{286} + \subitem {return}, \hyperpage{287} + \subitem {TMP\_HASHER\_CALL}, \hyperpage{277} \item {counters.hpp} - \subitem {DEFM\_COUNTER}, \hyperpage{322} - \subitem {DEFM\_COUNTER\_LAMBDA}, \hyperpage{322} - \subitem {DEFM\_RULE}, \hyperpage{323} - \subitem {DEFM\_RULE\_LAMBDA}, \hyperpage{323} - \subitem {DEFM\_RULEDYN\_LAMBDA}, \hyperpage{323} - \subitem {UNI\_SUB}, \hyperpage{323} + \subitem {DEFM\_COUNTER}, \hyperpage{306} + \subitem {DEFM\_COUNTER\_LAMBDA}, \hyperpage{307} + \subitem {DEFM\_RULE}, \hyperpage{307} + \subitem {DEFM\_RULE\_LAMBDA}, \hyperpage{307} + \subitem {DEFM\_RULEDYN\_LAMBDA}, \hyperpage{307} + \subitem {UNI\_SUB}, \hyperpage{308} \item {counters\_} - \subitem {model-\/meat.hpp}, \hyperpage{314} - \subitem {statscounter-\/meat.hpp}, \hyperpage{350} + \subitem {statscounter-\/meat.hpp}, \hyperpage{334} \item {COUNTERS\_TEMPLATE} - \subitem {counters-\/meat.hpp}, \hyperpage{275}, - \hyperpage{277--279} + \subitem {counters-\/meat.hpp}, \hyperpage{277}, + \hyperpage{279--281} \item {COUNTERS\_TEMPLATE\_ARGS} - \subitem {counters-\/meat.hpp}, \hyperpage{275} + \subitem {counters-\/meat.hpp}, \hyperpage{277} \item {COUNTERS\_TYPE} - \subitem {counters-\/meat.hpp}, \hyperpage{275} + \subitem {counters-\/meat.hpp}, \hyperpage{277} \item {Counting}, \hyperpage{13} \subitem {counter\_co\_opt}, \hyperpage{17} \subitem {counter\_cogain}, \hyperpage{18} @@ -992,9 +990,9 @@ \subitem {PHYLO\_RULE\_DYN\_LAMBDA}, \hyperpage{17} \item {counts} \subitem {Phylo rules}, \hyperpage{44} - \subitem {PhyloRuleDynData}, \hyperpage{212} + \subitem {PhyloRuleDynData}, \hyperpage{213} \item {Counts\_type} - \subitem {typedefs.hpp}, \hyperpage{355} + \subitem {typedefs.hpp}, \hyperpage{339} \item {covar\_sort} \subitem {Phylo rules}, \hyperpage{44} \item {covar\_used} @@ -1002,29 +1000,27 @@ \item {covariates} \subitem {Phylo rules}, \hyperpage{44} \item {CSS\_APPEND} - \subitem {network-\/css.hpp}, \hyperpage{286} + \subitem {network-\/css.hpp}, \hyperpage{288} \item {CSS\_CASE\_ELSE} - \subitem {network-\/css.hpp}, \hyperpage{287} + \subitem {network-\/css.hpp}, \hyperpage{289} \item {CSS\_CASE\_PERCEIVED} - \subitem {network-\/css.hpp}, \hyperpage{287} + \subitem {network-\/css.hpp}, \hyperpage{289} \item {CSS\_CASE\_TRUTH} - \subitem {network-\/css.hpp}, \hyperpage{287} + \subitem {network-\/css.hpp}, \hyperpage{289} \item {CSS\_CHECK\_SIZE} - \subitem {network-\/css.hpp}, \hyperpage{287} + \subitem {network-\/css.hpp}, \hyperpage{289} \item {CSS\_CHECK\_SIZE\_INIT} - \subitem {network-\/css.hpp}, \hyperpage{287} + \subitem {network-\/css.hpp}, \hyperpage{289} \item {CSS\_MATCH\_TYPE} - \subitem {network-\/css.hpp}, \hyperpage{288} + \subitem {network-\/css.hpp}, \hyperpage{290} \item {CSS\_NET\_COUNTER\_LAMBDA\_INIT} - \subitem {network-\/css.hpp}, \hyperpage{288} + \subitem {network-\/css.hpp}, \hyperpage{290} \item {CSS\_PERCEIVED\_CELLS} - \subitem {network-\/css.hpp}, \hyperpage{288} + \subitem {network-\/css.hpp}, \hyperpage{290} \item {CSS\_SIZE} - \subitem {network-\/css.hpp}, \hyperpage{288} + \subitem {network-\/css.hpp}, \hyperpage{290} \item {CSS\_TRUE\_CELLS} - \subitem {network-\/css.hpp}, \hyperpage{289} - \item {cumprob} - \subitem {model-\/meat.hpp}, \hyperpage{315} + \subitem {network-\/css.hpp}, \hyperpage{291} \item {current\_col} \subitem {ConstBArrayRowIter$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{128} @@ -1032,9 +1028,9 @@ \subitem {ConstBArrayRowIter$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{128} \item {current\_stats} - \subitem {statscounter-\/meat.hpp}, \hyperpage{350} + \subitem {statscounter-\/meat.hpp}, \hyperpage{334} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{241} + \hyperpage{242} \indexspace @@ -1042,7 +1038,7 @@ \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{64} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{84} - \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{223} + \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{224} \item {D\_ptr} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{64} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -1051,16 +1047,11 @@ \subitem {Flock}, \hyperpage{156} \item {data} \subitem {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{132} - \subitem {counters-\/meat.hpp}, \hyperpage{279} + \subitem {counters-\/meat.hpp}, \hyperpage{281} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{218} + \hyperpage{219} \item {data\_} - \subitem {counters-\/meat.hpp}, \hyperpage{282} - \subitem {model-\/meat.hpp}, \hyperpage{315} - \item {Data\_Counter\_Type} - \subitem {model-\/meat.hpp}, \hyperpage{315} - \item {Data\_Rule\_Type} - \subitem {model-\/meat.hpp}, \hyperpage{315} + \subitem {counters-\/meat.hpp}, \hyperpage{284} \item {default\_val} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{64} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -1088,29 +1079,29 @@ \subitem {simulate}, \hyperpage{143} \item {defm}, \hyperpage{57} \item {defm-\/meat.hpp} - \subitem {DEFM\_LOOP\_ARRAYS}, \hyperpage{327} - \subitem {DEFM\_RANGES}, \hyperpage{327} - \subitem {keygen\_defm}, \hyperpage{327} + \subitem {DEFM\_LOOP\_ARRAYS}, \hyperpage{311} + \subitem {DEFM\_RANGES}, \hyperpage{311} + \subitem {keygen\_defm}, \hyperpage{312} \item {defm-\/types.hpp} - \subitem {DEFMArray}, \hyperpage{328} + \subitem {DEFMArray}, \hyperpage{313} \item {DEFM\_COUNTER} - \subitem {counters.hpp}, \hyperpage{322} + \subitem {counters.hpp}, \hyperpage{306} \item {DEFM\_COUNTER\_LAMBDA} - \subitem {counters.hpp}, \hyperpage{322} + \subitem {counters.hpp}, \hyperpage{307} \item {DEFM\_LOOP\_ARRAYS} - \subitem {defm-\/meat.hpp}, \hyperpage{327} + \subitem {defm-\/meat.hpp}, \hyperpage{311} \item {defm\_motif\_parser} - \subitem {formula.hpp}, \hyperpage{329} + \subitem {formula.hpp}, \hyperpage{313} \item {DEFM\_RANGES} - \subitem {defm-\/meat.hpp}, \hyperpage{327} + \subitem {defm-\/meat.hpp}, \hyperpage{311} \item {DEFM\_RULE} - \subitem {counters.hpp}, \hyperpage{323} + \subitem {counters.hpp}, \hyperpage{307} \item {DEFM\_RULE\_LAMBDA} - \subitem {counters.hpp}, \hyperpage{323} + \subitem {counters.hpp}, \hyperpage{307} \item {DEFM\_RULEDYN\_LAMBDA} - \subitem {counters.hpp}, \hyperpage{323} + \subitem {counters.hpp}, \hyperpage{307} \item {DEFMArray} - \subitem {defm-\/types.hpp}, \hyperpage{328} + \subitem {defm-\/types.hpp}, \hyperpage{313} \item {DEFMCounter} \subitem {Phylo rules}, \hyperpage{37} \item {DEFMCounterData}, \hyperpage{144} @@ -1139,49 +1130,45 @@ \subitem {Phylo rules}, \hyperpage{38} \item {delete\_counters} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{192} + \hyperpage{193} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{241} + \hyperpage{242} \item {delete\_rengine} \subitem {Geese}, \hyperpage{172} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{192} + \hyperpage{193} \item {delete\_rules} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{192} - \subitem {model-\/meat.hpp}, \hyperpage{315} + \hyperpage{194} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{242} + \hyperpage{243} \item {delete\_rules\_dyn} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{192} - \subitem {model-\/meat.hpp}, \hyperpage{316} + \hyperpage{194} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{242} + \hyperpage{243} \item {delete\_support} \subitem {Geese}, \hyperpage{172} \item {desc} \subitem {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{133} - \subitem {counters-\/meat.hpp}, \hyperpage{279} + \subitem {counters-\/meat.hpp}, \hyperpage{281} \item {desc\_} - \subitem {counters-\/meat.hpp}, \hyperpage{282} + \subitem {counters-\/meat.hpp}, \hyperpage{284} \item {directed} - \subitem {NetworkData}, \hyperpage{200} + \subitem {NetworkData}, \hyperpage{202} \item {duplication} - \subitem {Node}, \hyperpage{205} - \subitem {NodeData}, \hyperpage{208} - \subitem {PhyloRuleDynData}, \hyperpage{212} + \subitem {Node}, \hyperpage{206} + \subitem {NodeData}, \hyperpage{209} + \subitem {PhyloRuleDynData}, \hyperpage{213} \indexspace - \item {else} - \subitem {model-\/meat.hpp}, \hyperpage{316} \item {empty} - \subitem {PhyloCounterData}, \hyperpage{209} + \subitem {PhyloCounterData}, \hyperpage{210} \item {EmptyArray} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{218} - \subitem {statscounter-\/meat.hpp}, \hyperpage{350} + \hyperpage{219} + \subitem {statscounter-\/meat.hpp}, \hyperpage{334} \item {end} \subitem {BArrayDenseCol$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{101} @@ -1195,11 +1182,11 @@ \hyperpage{115} \subitem {BArrayVector\_const$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{119} - \subitem {PhyloCounterData}, \hyperpage{210} + \subitem {PhyloCounterData}, \hyperpage{211} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{216} - \subitem {Progress}, \hyperpage{221} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{226} + \hyperpage{217} + \subitem {Progress}, \hyperpage{222} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{227} \item {Entries} \subitem {Entries$<$ Cell\_Type $>$}, \hyperpage{148} \item {Entries$<$ Cell\_Type $>$}, \hyperpage{148} @@ -1219,7 +1206,7 @@ \subitem {Geese}, \hyperpage{173} \item {eval\_rules\_dyn} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{237} + \hyperpage{238} \item {EXISTS}, \hyperpage{57} \subitem {AS\_ONE}, \hyperpage{57} \subitem {AS\_ZERO}, \hyperpage{57} @@ -1232,10 +1219,10 @@ \indexspace \item {f\_} - \subitem {statscounter-\/meat.hpp}, \hyperpage{351} + \subitem {statscounter-\/meat.hpp}, \hyperpage{335} \item {first\_calc\_done} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{192} + \hyperpage{194} \item {Flock}, \hyperpage{150} \subitem {$\sim$Flock}, \hyperpage{151} \subitem {add\_data}, \hyperpage{151} @@ -1266,14 +1253,11 @@ \item {flush\_data} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{64} \item {for} - \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{249} - \subitem {counters-\/meat.hpp}, \hyperpage{279} - \subitem {model-\/meat.hpp}, \hyperpage{304} - \subitem {statscounter-\/meat.hpp}, \hyperpage{347} - \item {force\_new} - \subitem {model-\/meat.hpp}, \hyperpage{316} + \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{251} + \subitem {counters-\/meat.hpp}, \hyperpage{281} + \subitem {statscounter-\/meat.hpp}, \hyperpage{331} \item {formula.hpp} - \subitem {defm\_motif\_parser}, \hyperpage{329} + \subitem {defm\_motif\_parser}, \hyperpage{313} \item {FreqTable} \subitem {FreqTable$<$ T $>$}, \hyperpage{158} \item {FreqTable$<$ T $>$}, \hyperpage{157} @@ -1289,10 +1273,9 @@ \subitem {reserve}, \hyperpage{159} \subitem {size}, \hyperpage{160} \item {fun} - \subitem {counters-\/meat.hpp}, \hyperpage{283} + \subitem {counters-\/meat.hpp}, \hyperpage{285} \item {fun\_} - \subitem {counters-\/meat.hpp}, \hyperpage{283} - \subitem {model-\/meat.hpp}, \hyperpage{316} + \subitem {counters-\/meat.hpp}, \hyperpage{285} \indexspace @@ -1350,25 +1333,25 @@ \subitem {update\_annotations}, \hyperpage{171} \item {geese}, \hyperpage{58} \item {geese-\/bones.hpp} - \subitem {INITIALIZED}, \hyperpage{333} - \subitem {keygen\_full}, \hyperpage{333} - \subitem {RULE\_FUNCTION}, \hyperpage{333} - \subitem {vec\_diff}, \hyperpage{333} - \subitem {vector\_caster}, \hyperpage{334} + \subitem {INITIALIZED}, \hyperpage{317} + \subitem {keygen\_full}, \hyperpage{317} + \subitem {RULE\_FUNCTION}, \hyperpage{317} + \subitem {vec\_diff}, \hyperpage{317} + \subitem {vector\_caster}, \hyperpage{318} \item {geese-\/types.hpp} - \subitem {PhyloArray}, \hyperpage{340} - \subitem {PhyloCounter}, \hyperpage{340} - \subitem {PhyloCounters}, \hyperpage{341} - \subitem {PhyloModel}, \hyperpage{341} - \subitem {PhyloPowerSet}, \hyperpage{341} - \subitem {PhyloRule}, \hyperpage{341} - \subitem {PhyloRuleData}, \hyperpage{341} - \subitem {PhyloRuleDyn}, \hyperpage{341} - \subitem {PhyloRules}, \hyperpage{342} - \subitem {PhyloRulesDyn}, \hyperpage{342} - \subitem {PhyloStatsCounter}, \hyperpage{342} - \subitem {PhyloSupport}, \hyperpage{342} - \subitem {POS}, \hyperpage{340} + \subitem {PhyloArray}, \hyperpage{324} + \subitem {PhyloCounter}, \hyperpage{324} + \subitem {PhyloCounters}, \hyperpage{325} + \subitem {PhyloModel}, \hyperpage{325} + \subitem {PhyloPowerSet}, \hyperpage{325} + \subitem {PhyloRule}, \hyperpage{325} + \subitem {PhyloRuleData}, \hyperpage{325} + \subitem {PhyloRuleDyn}, \hyperpage{325} + \subitem {PhyloRules}, \hyperpage{326} + \subitem {PhyloRulesDyn}, \hyperpage{326} + \subitem {PhyloStatsCounter}, \hyperpage{326} + \subitem {PhyloSupport}, \hyperpage{326} + \subitem {POS}, \hyperpage{324} \item {gen\_hash} \subitem {Counters$<$ Array\_Type, Data\_Type $>$}, \hyperpage{136} \item {gen\_key} @@ -1396,36 +1379,36 @@ \subitem {Geese}, \hyperpage{165} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{183} - \subitem {PhyloCounterData}, \hyperpage{210} + \subitem {PhyloCounterData}, \hyperpage{211} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{231} + \hyperpage{232} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{237} + \hyperpage{238} \item {get\_counts} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{237} + \hyperpage{238} \item {get\_current\_stats} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{237} + \hyperpage{238} \item {get\_data} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{86} \subitem {FreqTable$<$ T $>$}, \hyperpage{159} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{216} + \hyperpage{217} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{238} + \hyperpage{239} \item {get\_data\_ptr} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{217} + \hyperpage{218} \item {get\_description} \subitem {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{131} - \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{223} + \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{224} \item {get\_descriptions} \subitem {Counters$<$ Array\_Type, Data\_Type $>$}, \hyperpage{136} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{226} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{227} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{231} + \hyperpage{232} \item {get\_entries} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{65} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -1454,22 +1437,22 @@ \subitem {DEFM}, \hyperpage{141} \item {get\_name} \subitem {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{131} - \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{223} + \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{224} \item {get\_names} \subitem {Counters$<$ Array\_Type, Data\_Type $>$}, \hyperpage{137} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{227} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{228} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{231} + \hyperpage{232} \item {get\_norm\_const} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{183} \item {get\_parent} - \subitem {Node}, \hyperpage{203} + \subitem {Node}, \hyperpage{205} \item {get\_probabilities} \subitem {Geese}, \hyperpage{166} \item {get\_pset} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{183} + \hyperpage{184} \item {get\_pset\_arrays} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{184} @@ -1478,11 +1461,11 @@ \hyperpage{184} \item {get\_pset\_stats} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{184} + \hyperpage{184, 185} \item {get\_rengine} \subitem {Geese}, \hyperpage{166} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{184} + \hyperpage{185} \item {get\_row\_vec} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{65} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -1491,29 +1474,29 @@ \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{185} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{238} + \hyperpage{239} \item {get\_rules\_dyn} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{185} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{238} + \hyperpage{239} \item {get\_seq} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{227} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{228} \item {get\_states} \subitem {Geese}, \hyperpage{166} \item {get\_stats\_support} \subitem {Flock}, \hyperpage{152} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{185} + \hyperpage{186} \item {get\_stats\_target} \subitem {Flock}, \hyperpage{152} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{185} + \hyperpage{186} \item {get\_support\_fun} \subitem {Flock}, \hyperpage{153} \subitem {Geese}, \hyperpage{166} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{185} + \hyperpage{186} \item {get\_X} \subitem {DEFM}, \hyperpage{141} \item {get\_X\_names} @@ -1526,112 +1509,108 @@ \indexspace \item {hasher} - \subitem {counters-\/meat.hpp}, \hyperpage{279, 280} + \subitem {counters-\/meat.hpp}, \hyperpage{281, 282} \item {hasher\_fun} \subitem {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{133} - \subitem {counters-\/meat.hpp}, \hyperpage{280} + \subitem {counters-\/meat.hpp}, \hyperpage{282} \item {hasher\_fun\_} - \subitem {counters-\/meat.hpp}, \hyperpage{283} + \subitem {counters-\/meat.hpp}, \hyperpage{285} \item {Hasher\_fun\_type} - \subitem {typedefs.hpp}, \hyperpage{355} + \subitem {typedefs.hpp}, \hyperpage{339} \item {hashes} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{242} + \hyperpage{243} \item {hashes\_initialized} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{242} + \hyperpage{243} \indexspace \item {i} - \subitem {counters-\/meat.hpp}, \hyperpage{283} - \subitem {model-\/meat.hpp}, \hyperpage{316} - \item {i\_matches} - \subitem {model-\/meat.hpp}, \hyperpage{317} + \subitem {counters-\/meat.hpp}, \hyperpage{285} \item {id} - \subitem {Node}, \hyperpage{205} + \subitem {Node}, \hyperpage{206} \item {idx} \subitem {Phylo rules}, \hyperpage{40, 41} \item {if} - \subitem {counters-\/meat.hpp}, \hyperpage{280} - \subitem {model-\/meat.hpp}, \hyperpage{304, 305} + \subitem {counters-\/meat.hpp}, \hyperpage{282} \item {IF\_MATCHES} \subitem {Counting}, \hyperpage{15} \item {IF\_NOTMATCHES} \subitem {Counting}, \hyperpage{15} - \item {include/barry/barray-\/bones.hpp}, \hyperpage{245} - \item {include/barry/barray-\/iterator.hpp}, \hyperpage{245} - \item {include/barry/barray-\/meat-\/operators.hpp}, \hyperpage{246} - \item {include/barry/barray-\/meat.hpp}, \hyperpage{250} - \item {include/barry/barraycell-\/bones.hpp}, \hyperpage{251} - \item {include/barry/barraycell-\/meat.hpp}, \hyperpage{252} - \item {include/barry/barraydense-\/bones.hpp}, \hyperpage{252} + \item {include/barry/barray-\/bones.hpp}, \hyperpage{247} + \item {include/barry/barray-\/iterator.hpp}, \hyperpage{247} + \item {include/barry/barray-\/meat-\/operators.hpp}, \hyperpage{248} + \item {include/barry/barray-\/meat.hpp}, \hyperpage{252} + \item {include/barry/barraycell-\/bones.hpp}, \hyperpage{253} + \item {include/barry/barraycell-\/meat.hpp}, \hyperpage{254} + \item {include/barry/barraydense-\/bones.hpp}, \hyperpage{254} \item {include/barry/barraydense-\/meat-\/operators.hpp}, - \hyperpage{253} - \item {include/barry/barraydense-\/meat.hpp}, \hyperpage{256} - \item {include/barry/barraydensecell-\/bones.hpp}, \hyperpage{257} - \item {include/barry/barraydensecell-\/meat.hpp}, \hyperpage{258} - \item {include/barry/barraydensecol-\/bones.hpp}, \hyperpage{259} - \item {include/barry/barraydenserow-\/bones.hpp}, \hyperpage{260} - \item {include/barry/barrayrow-\/bones.hpp}, \hyperpage{261} - \item {include/barry/barrayrow-\/meat.hpp}, \hyperpage{261} - \item {include/barry/barrayvector-\/bones.hpp}, \hyperpage{263} - \item {include/barry/barrayvector-\/meat.hpp}, \hyperpage{264} - \item {include/barry/barry-\/configuration.hpp}, \hyperpage{264} - \item {include/barry/barry-\/debug.hpp}, \hyperpage{266} - \item {include/barry/barry-\/macros.hpp}, \hyperpage{267} - \item {include/barry/barry.hpp}, \hyperpage{268} - \item {include/barry/cell-\/bones.hpp}, \hyperpage{271} - \item {include/barry/cell-\/meat.hpp}, \hyperpage{272} - \item {include/barry/col-\/bones.hpp}, \hyperpage{272} - \item {include/barry/counters-\/bones.hpp}, \hyperpage{272} - \item {include/barry/counters-\/meat.hpp}, \hyperpage{273} - \item {include/barry/counters/network-\/css.hpp}, \hyperpage{285} - \item {include/barry/counters/network.hpp}, \hyperpage{293} - \item {include/barry/freqtable.hpp}, \hyperpage{300} - \item {include/barry/model-\/bones.hpp}, \hyperpage{301} - \item {include/barry/model-\/meat.hpp}, \hyperpage{301} - \item {include/barry/models/defm.hpp}, \hyperpage{320} - \item {include/barry/models/defm/counters.hpp}, \hyperpage{321} - \item {include/barry/models/defm/defm-\/bones.hpp}, \hyperpage{326} - \item {include/barry/models/defm/defm-\/meat.hpp}, \hyperpage{326} - \item {include/barry/models/defm/defm-\/types.hpp}, \hyperpage{328} - \item {include/barry/models/defm/formula.hpp}, \hyperpage{329} - \item {include/barry/models/geese.hpp}, \hyperpage{331} - \item {include/barry/models/geese/counters.hpp}, \hyperpage{324} - \item {include/barry/models/geese/flock-\/bones.hpp}, \hyperpage{331} - \item {include/barry/models/geese/flock-\/meat.hpp}, \hyperpage{332} - \item {include/barry/models/geese/geese-\/bones.hpp}, \hyperpage{332} + \hyperpage{255} + \item {include/barry/barraydense-\/meat.hpp}, \hyperpage{258} + \item {include/barry/barraydensecell-\/bones.hpp}, \hyperpage{259} + \item {include/barry/barraydensecell-\/meat.hpp}, \hyperpage{260} + \item {include/barry/barraydensecol-\/bones.hpp}, \hyperpage{261} + \item {include/barry/barraydenserow-\/bones.hpp}, \hyperpage{262} + \item {include/barry/barrayrow-\/bones.hpp}, \hyperpage{263} + \item {include/barry/barrayrow-\/meat.hpp}, \hyperpage{263} + \item {include/barry/barrayvector-\/bones.hpp}, \hyperpage{265} + \item {include/barry/barrayvector-\/meat.hpp}, \hyperpage{266} + \item {include/barry/barry-\/configuration.hpp}, \hyperpage{266} + \item {include/barry/barry-\/debug.hpp}, \hyperpage{268} + \item {include/barry/barry-\/macros.hpp}, \hyperpage{269} + \item {include/barry/barry.hpp}, \hyperpage{270} + \item {include/barry/cell-\/bones.hpp}, \hyperpage{273} + \item {include/barry/cell-\/meat.hpp}, \hyperpage{274} + \item {include/barry/col-\/bones.hpp}, \hyperpage{274} + \item {include/barry/counters-\/bones.hpp}, \hyperpage{274} + \item {include/barry/counters-\/meat.hpp}, \hyperpage{275} + \item {include/barry/counters/network-\/css.hpp}, \hyperpage{287} + \item {include/barry/counters/network.hpp}, \hyperpage{295} + \item {include/barry/freqtable.hpp}, \hyperpage{302} + \item {include/barry/model-\/bones.hpp}, \hyperpage{303} + \item {include/barry/model-\/meat.hpp}, \hyperpage{303} + \item {include/barry/models/defm.hpp}, \hyperpage{304} + \item {include/barry/models/defm/counters.hpp}, \hyperpage{305} + \item {include/barry/models/defm/defm-\/bones.hpp}, \hyperpage{310} + \item {include/barry/models/defm/defm-\/meat.hpp}, \hyperpage{311} + \item {include/barry/models/defm/defm-\/types.hpp}, \hyperpage{312} + \item {include/barry/models/defm/formula.hpp}, \hyperpage{313} + \item {include/barry/models/geese.hpp}, \hyperpage{315} + \item {include/barry/models/geese/counters.hpp}, \hyperpage{308} + \item {include/barry/models/geese/flock-\/bones.hpp}, \hyperpage{315} + \item {include/barry/models/geese/flock-\/meat.hpp}, \hyperpage{316} + \item {include/barry/models/geese/geese-\/bones.hpp}, \hyperpage{316} \item {include/barry/models/geese/geese-\/meat-\/constructors.hpp}, - \hyperpage{334} + \hyperpage{318} \item {include/barry/models/geese/geese-\/meat-\/likelihood.hpp}, - \hyperpage{335} + \hyperpage{319} \item {include/barry/models/geese/geese-\/meat-\/likelihood\_exhaust.hpp}, - \hyperpage{336} + \hyperpage{320} \item {include/barry/models/geese/geese-\/meat-\/predict.hpp}, - \hyperpage{336} + \hyperpage{320} \item {include/barry/models/geese/geese-\/meat-\/predict\_exhaust.hpp}, - \hyperpage{337} + \hyperpage{321} \item {include/barry/models/geese/geese-\/meat-\/predict\_sim.hpp}, - \hyperpage{337} + \hyperpage{321} \item {include/barry/models/geese/geese-\/meat-\/simulate.hpp}, - \hyperpage{338} - \item {include/barry/models/geese/geese-\/meat.hpp}, \hyperpage{338} + \hyperpage{322} + \item {include/barry/models/geese/geese-\/meat.hpp}, \hyperpage{322} \item {include/barry/models/geese/geese-\/node-\/bones.hpp}, - \hyperpage{339} - \item {include/barry/models/geese/geese-\/types.hpp}, \hyperpage{339} - \item {include/barry/powerset-\/bones.hpp}, \hyperpage{342} - \item {include/barry/powerset-\/meat.hpp}, \hyperpage{343} - \item {include/barry/progress.hpp}, \hyperpage{343} - \item {include/barry/rules-\/bones.hpp}, \hyperpage{344} - \item {include/barry/rules-\/meat.hpp}, \hyperpage{345} - \item {include/barry/statscounter-\/bones.hpp}, \hyperpage{345} - \item {include/barry/statscounter-\/meat.hpp}, \hyperpage{346} - \item {include/barry/support-\/bones.hpp}, \hyperpage{351} - \item {include/barry/support-\/meat.hpp}, \hyperpage{352} - \item {include/barry/typedefs.hpp}, \hyperpage{353} + \hyperpage{323} + \item {include/barry/models/geese/geese-\/types.hpp}, \hyperpage{323} + \item {include/barry/powerset-\/bones.hpp}, \hyperpage{326} + \item {include/barry/powerset-\/meat.hpp}, \hyperpage{327} + \item {include/barry/progress.hpp}, \hyperpage{327} + \item {include/barry/rules-\/bones.hpp}, \hyperpage{328} + \item {include/barry/rules-\/meat.hpp}, \hyperpage{329} + \item {include/barry/statscounter-\/bones.hpp}, \hyperpage{329} + \item {include/barry/statscounter-\/meat.hpp}, \hyperpage{330} + \item {include/barry/support-\/bones.hpp}, \hyperpage{335} + \item {include/barry/support-\/meat.hpp}, \hyperpage{336} + \item {include/barry/typedefs.hpp}, \hyperpage{337} \item {indices} - \subitem {NetCounterData}, \hyperpage{198} + \subitem {NetCounterData}, \hyperpage{200} \subitem {Phylo rules}, \hyperpage{44, 45} \item {inherit\_support} \subitem {Geese}, \hyperpage{167} @@ -1643,19 +1622,18 @@ \subitem {Phylo rules}, \hyperpage{45} \item {init\_fun} \subitem {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{133} - \subitem {counters-\/meat.hpp}, \hyperpage{281} + \subitem {counters-\/meat.hpp}, \hyperpage{283} \item {init\_fun\_} - \subitem {counters-\/meat.hpp}, \hyperpage{284} - \subitem {model-\/meat.hpp}, \hyperpage{317} + \subitem {counters-\/meat.hpp}, \hyperpage{286} \item {init\_node} \subitem {Geese}, \hyperpage{167} \item {init\_support} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{217} + \hyperpage{218} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{238} + \hyperpage{239} \item {INITIALIZED} - \subitem {geese-\/bones.hpp}, \hyperpage{333} + \subitem {geese-\/bones.hpp}, \hyperpage{317} \item {initialized} \subitem {Flock}, \hyperpage{156} \subitem {Geese}, \hyperpage{173} @@ -1663,7 +1641,6 @@ \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{66} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{87} - \subitem {model-\/meat.hpp}, \hyperpage{305} \item {is\_col} \subitem {BArrayVector$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{115} @@ -1682,7 +1659,7 @@ \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{88} \item {is\_leaf} - \subitem {Node}, \hyperpage{204} + \subitem {Node}, \hyperpage{205} \item {is\_motif} \subitem {DEFM}, \hyperpage{142} \subitem {Phylo rules}, \hyperpage{45} @@ -1702,34 +1679,29 @@ \indexspace \item {j} - \subitem {counters-\/meat.hpp}, \hyperpage{284} - \subitem {model-\/meat.hpp}, \hyperpage{317} - \subitem {statscounter-\/meat.hpp}, \hyperpage{351} + \subitem {counters-\/meat.hpp}, \hyperpage{286} + \subitem {statscounter-\/meat.hpp}, \hyperpage{335} \indexspace - \item {k} - \subitem {model-\/meat.hpp}, \hyperpage{317} - \item {key} - \subitem {model-\/meat.hpp}, \hyperpage{317} \item {keygen\_defm} - \subitem {defm-\/meat.hpp}, \hyperpage{327} + \subitem {defm-\/meat.hpp}, \hyperpage{312} \item {keygen\_full} - \subitem {geese-\/bones.hpp}, \hyperpage{333} + \subitem {geese-\/bones.hpp}, \hyperpage{317} \item {keys2support} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{193} + \hyperpage{194} \indexspace \item {lb} - \subitem {PhyloRuleDynData}, \hyperpage{213} + \subitem {PhyloRuleDynData}, \hyperpage{214} \item {likelihood} \subitem {Geese}, \hyperpage{167} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{186} + \hyperpage{186, 187} \item {likelihood\_} - \subitem {model-\/meat.hpp}, \hyperpage{305} + \subitem {model-\/meat.hpp}, \hyperpage{304} \item {likelihood\_exhaust} \subitem {Geese}, \hyperpage{167} \item {likelihood\_joint} @@ -1737,8 +1709,6 @@ \item {likelihood\_total} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{187} - \item {locator} - \subitem {model-\/meat.hpp}, \hyperpage{317} \item {logical} \subitem {Phylo rules}, \hyperpage{45} \item {logodds} @@ -1748,9 +1718,9 @@ \item {M} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{218} + \hyperpage{219} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{242} + \hyperpage{243} \item {MAKE\_DEFM\_HASHER} \subitem {Counting}, \hyperpage{16} \item {MAKE\_DUPL\_VARS} @@ -1758,14 +1728,14 @@ \item {make\_hash} \subitem {FreqTable$<$ T $>$}, \hyperpage{159} \item {Map} - \subitem {barry-\/configuration.hpp}, \hyperpage{266} + \subitem {barry-\/configuration.hpp}, \hyperpage{268} \item {map\_to\_state\_id} \subitem {Geese}, \hyperpage{173} \item {MapVec\_type} - \subitem {typedefs.hpp}, \hyperpage{356} + \subitem {typedefs.hpp}, \hyperpage{340} \item {max\_num\_elements} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{243} + \hyperpage{244} \item {Model} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, \hyperpage{179} @@ -1779,122 +1749,70 @@ \subitem {add\_hasher}, \hyperpage{181} \subitem {add\_rule}, \hyperpage{181} \subitem {add\_rule\_dyn}, \hyperpage{181, 182} - \subitem {arrays2support}, \hyperpage{191} + \subitem {arrays2support}, \hyperpage{193} \subitem {colnames}, \hyperpage{182} \subitem {conditional\_prob}, \hyperpage{182} - \subitem {counter\_fun}, \hyperpage{191} - \subitem {counters}, \hyperpage{191} - \subitem {delete\_counters}, \hyperpage{192} - \subitem {delete\_rengine}, \hyperpage{192} - \subitem {delete\_rules}, \hyperpage{192} - \subitem {delete\_rules\_dyn}, \hyperpage{192} - \subitem {first\_calc\_done}, \hyperpage{192} + \subitem {counter\_fun}, \hyperpage{193} + \subitem {counters}, \hyperpage{193} + \subitem {delete\_counters}, \hyperpage{193} + \subitem {delete\_rengine}, \hyperpage{193} + \subitem {delete\_rules}, \hyperpage{194} + \subitem {delete\_rules\_dyn}, \hyperpage{194} + \subitem {first\_calc\_done}, \hyperpage{194} \subitem {gen\_key}, \hyperpage{183} \subitem {get\_arrays2support}, \hyperpage{183} \subitem {get\_counters}, \hyperpage{183} \subitem {get\_norm\_const}, \hyperpage{183} - \subitem {get\_pset}, \hyperpage{183} + \subitem {get\_pset}, \hyperpage{184} \subitem {get\_pset\_arrays}, \hyperpage{184} \subitem {get\_pset\_probs}, \hyperpage{184} - \subitem {get\_pset\_stats}, \hyperpage{184} - \subitem {get\_rengine}, \hyperpage{184} + \subitem {get\_pset\_stats}, \hyperpage{184, 185} + \subitem {get\_rengine}, \hyperpage{185} \subitem {get\_rules}, \hyperpage{185} \subitem {get\_rules\_dyn}, \hyperpage{185} - \subitem {get\_stats\_support}, \hyperpage{185} - \subitem {get\_stats\_target}, \hyperpage{185} - \subitem {get\_support\_fun}, \hyperpage{185} - \subitem {keys2support}, \hyperpage{193} - \subitem {likelihood}, \hyperpage{186} + \subitem {get\_stats\_support}, \hyperpage{186} + \subitem {get\_stats\_target}, \hyperpage{186} + \subitem {get\_support\_fun}, \hyperpage{186} + \subitem {keys2support}, \hyperpage{194} + \subitem {likelihood}, \hyperpage{186, 187} \subitem {likelihood\_total}, \hyperpage{187} \subitem {Model}, \hyperpage{179} - \subitem {normalizing\_constants}, \hyperpage{193} - \subitem {nrules}, \hyperpage{187} - \subitem {nrules\_dyn}, \hyperpage{187} - \subitem {nterms}, \hyperpage{187} - \subitem {operator=}, \hyperpage{187} - \subitem {params\_last}, \hyperpage{193} - \subitem {print}, \hyperpage{188} - \subitem {print\_stats}, \hyperpage{188} - \subitem {pset\_arrays}, \hyperpage{193} - \subitem {pset\_probs}, \hyperpage{194} - \subitem {pset\_stats}, \hyperpage{194} - \subitem {rengine}, \hyperpage{194} - \subitem {rules}, \hyperpage{194} - \subitem {rules\_dyn}, \hyperpage{195} - \subitem {sample}, \hyperpage{188} - \subitem {set\_counters}, \hyperpage{189} - \subitem {set\_rengine}, \hyperpage{189} - \subitem {set\_rules}, \hyperpage{189} - \subitem {set\_rules\_dyn}, \hyperpage{189} - \subitem {set\_seed}, \hyperpage{189} - \subitem {set\_transform\_model}, \hyperpage{190} - \subitem {size}, \hyperpage{190} - \subitem {size\_unique}, \hyperpage{190} - \subitem {stats\_support}, \hyperpage{195} - \subitem {stats\_support\_n\_arrays}, \hyperpage{195} - \subitem {stats\_target}, \hyperpage{195} - \subitem {store\_psets}, \hyperpage{190} - \subitem {support\_fun}, \hyperpage{196} - \subitem {support\_size}, \hyperpage{191} - \subitem {transform\_model}, \hyperpage{191} - \subitem {transform\_model\_fun}, \hyperpage{196} - \subitem {transform\_model\_term\_names}, \hyperpage{196} - \subitem {with\_pset}, \hyperpage{197} + \subitem {normalizing\_constants}, \hyperpage{194} + \subitem {nrules}, \hyperpage{188} + \subitem {nrules\_dyn}, \hyperpage{188} + \subitem {nterms}, \hyperpage{188} + \subitem {operator=}, \hyperpage{188} + \subitem {params\_last}, \hyperpage{195} + \subitem {print}, \hyperpage{189} + \subitem {print\_stats}, \hyperpage{189} + \subitem {pset\_arrays}, \hyperpage{195} + \subitem {pset\_probs}, \hyperpage{195} + \subitem {pset\_stats}, \hyperpage{195} + \subitem {rengine}, \hyperpage{196} + \subitem {rules}, \hyperpage{196} + \subitem {rules\_dyn}, \hyperpage{196} + \subitem {sample}, \hyperpage{189} + \subitem {set\_counters}, \hyperpage{190} + \subitem {set\_rengine}, \hyperpage{190} + \subitem {set\_rules}, \hyperpage{190} + \subitem {set\_rules\_dyn}, \hyperpage{190} + \subitem {set\_seed}, \hyperpage{191} + \subitem {set\_transform\_model}, \hyperpage{191} + \subitem {size}, \hyperpage{191} + \subitem {size\_unique}, \hyperpage{192} + \subitem {stats\_support}, \hyperpage{196} + \subitem {stats\_support\_n\_arrays}, \hyperpage{197} + \subitem {stats\_target}, \hyperpage{197} + \subitem {store\_psets}, \hyperpage{192} + \subitem {support\_fun}, \hyperpage{197} + \subitem {support\_size}, \hyperpage{192} + \subitem {transform\_model}, \hyperpage{192} + \subitem {transform\_model\_fun}, \hyperpage{197} + \subitem {transform\_model\_term\_names}, \hyperpage{198} + \subitem {with\_pset}, \hyperpage{198} \item {model-\/meat.hpp} - \subitem {a}, \hyperpage{314} - \subitem {count\_fun\_}, \hyperpage{314} - \subitem {counter}, \hyperpage{314} - \subitem {counters\_}, \hyperpage{314} - \subitem {cumprob}, \hyperpage{315} - \subitem {data\_}, \hyperpage{315} - \subitem {Data\_Counter\_Type}, \hyperpage{315} - \subitem {Data\_Rule\_Type}, \hyperpage{315} - \subitem {delete\_rules}, \hyperpage{315} - \subitem {delete\_rules\_dyn}, \hyperpage{316} - \subitem {else}, \hyperpage{316} - \subitem {for}, \hyperpage{304} - \subitem {force\_new}, \hyperpage{316} - \subitem {fun\_}, \hyperpage{316} - \subitem {i}, \hyperpage{316} - \subitem {i\_matches}, \hyperpage{317} - \subitem {if}, \hyperpage{304, 305} - \subitem {init\_fun\_}, \hyperpage{317} - \subitem {insert\_cell}, \hyperpage{305} - \subitem {j}, \hyperpage{317} - \subitem {k}, \hyperpage{317} - \subitem {key}, \hyperpage{317} - \subitem {likelihood\_}, \hyperpage{305} - \subitem {locator}, \hyperpage{317} - \subitem {MODEL\_TEMPLATE}, \hyperpage{303}, \hyperpage{306--312} - \subitem {MODEL\_TEMPLATE\_ARGS}, \hyperpage{304} - \subitem {MODEL\_TYPE}, \hyperpage{304} - \subitem {params}, \hyperpage{318} - \subitem {probs}, \hyperpage{318} - \subitem {pset\_arrays}, \hyperpage{318} - \subitem {push\_back}, \hyperpage{312} - \subitem {r}, \hyperpage{318} - \subitem {reserve}, \hyperpage{312} - \subitem {return}, \hyperpage{312}, \hyperpage{318} - \subitem {rule\_fun\_}, \hyperpage{318} - \subitem {rules}, \hyperpage{319} - \subitem {rules\_}, \hyperpage{319} - \subitem {rules\_dyn}, \hyperpage{319} - \subitem {set\_counters}, \hyperpage{313} - \subitem {set\_rules}, \hyperpage{313} - \subitem {set\_rules\_dyn}, \hyperpage{313} - \subitem {size}, \hyperpage{313} - \subitem {stats}, \hyperpage{319} - \subitem {stats\_support\_n\_arrays}, \hyperpage{319} - \subitem {temp\_stats}, \hyperpage{313} - \subitem {tmp\_counts}, \hyperpage{320} - \subitem {update\_normalizing\_constant}, \hyperpage{313} - \subitem {urand}, \hyperpage{314} - \item {MODEL\_TEMPLATE} - \subitem {model-\/meat.hpp}, \hyperpage{303}, \hyperpage{306--312} - \item {MODEL\_TEMPLATE\_ARGS} - \subitem {model-\/meat.hpp}, \hyperpage{304} - \item {MODEL\_TYPE} - \subitem {model-\/meat.hpp}, \hyperpage{304} + \subitem {likelihood\_}, \hyperpage{304} + \subitem {update\_normalizing\_constant}, \hyperpage{304} \item {motif\_census} \subitem {DEFM}, \hyperpage{143} @@ -1902,57 +1820,57 @@ \item {N} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{219} + \hyperpage{220} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{243} + \hyperpage{244} \item {n\_counters} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{243} + \hyperpage{244} \item {n\_free} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{219} + \hyperpage{220} \item {n\_locked} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{219} + \hyperpage{220} \item {name} \subitem {Counter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{133} - \subitem {counters-\/meat.hpp}, \hyperpage{281} + \subitem {counters-\/meat.hpp}, \hyperpage{283} \item {name\_} - \subitem {counters-\/meat.hpp}, \hyperpage{284} + \subitem {counters-\/meat.hpp}, \hyperpage{286} \item {nannotations} \subitem {Geese}, \hyperpage{168} \item {narray} - \subitem {Node}, \hyperpage{205} + \subitem {Node}, \hyperpage{206} \item {ncol} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{67} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{88} \subitem {Phylo rules}, \hyperpage{41} \item {NET\_C\_DATA\_IDX} - \subitem {network.hpp}, \hyperpage{297} + \subitem {network.hpp}, \hyperpage{299} \item {NET\_C\_DATA\_NUM} - \subitem {network.hpp}, \hyperpage{297} + \subitem {network.hpp}, \hyperpage{299} \item {NetCounter} - \subitem {network.hpp}, \hyperpage{298} - \item {NetCounterData}, \hyperpage{197} - \subitem {$\sim$NetCounterData}, \hyperpage{198} - \subitem {indices}, \hyperpage{198} - \subitem {NetCounterData}, \hyperpage{198} - \subitem {numbers}, \hyperpage{198} + \subitem {network.hpp}, \hyperpage{300} + \item {NetCounterData}, \hyperpage{199} + \subitem {$\sim$NetCounterData}, \hyperpage{199} + \subitem {indices}, \hyperpage{200} + \subitem {NetCounterData}, \hyperpage{199} + \subitem {numbers}, \hyperpage{200} \item {NetCounters} - \subitem {network.hpp}, \hyperpage{298} + \subitem {network.hpp}, \hyperpage{300} \item {NetModel} - \subitem {network.hpp}, \hyperpage{299} + \subitem {network.hpp}, \hyperpage{301} \item {NetRule} - \subitem {network.hpp}, \hyperpage{299} + \subitem {network.hpp}, \hyperpage{301} \item {NetRules} - \subitem {network.hpp}, \hyperpage{299} + \subitem {network.hpp}, \hyperpage{301} \item {NetStatsCounter} - \subitem {network.hpp}, \hyperpage{299} + \subitem {network.hpp}, \hyperpage{301} \item {NetSupport} - \subitem {network.hpp}, \hyperpage{299} + \subitem {network.hpp}, \hyperpage{301} \item {Network} - \subitem {network.hpp}, \hyperpage{299} + \subitem {network.hpp}, \hyperpage{301} \item {Network counters}, \hyperpage{24} \subitem {counter\_absdiff}, \hyperpage{26} \subitem {counter\_ctriads}, \hyperpage{27} @@ -1982,76 +1900,76 @@ \subitem {rules\_dont\_become\_zero}, \hyperpage{34} \subitem {rules\_markov\_fixed}, \hyperpage{35} \item {network-\/css.hpp} - \subitem {counter\_css\_census01}, \hyperpage{289} - \subitem {counter\_css\_census02}, \hyperpage{289} - \subitem {counter\_css\_census03}, \hyperpage{289} - \subitem {counter\_css\_census04}, \hyperpage{290} - \subitem {counter\_css\_census05}, \hyperpage{290} - \subitem {counter\_css\_census06}, \hyperpage{290} - \subitem {counter\_css\_census07}, \hyperpage{290} - \subitem {counter\_css\_census08}, \hyperpage{291} - \subitem {counter\_css\_census09}, \hyperpage{291} - \subitem {counter\_css\_census10}, \hyperpage{291} + \subitem {counter\_css\_census01}, \hyperpage{291} + \subitem {counter\_css\_census02}, \hyperpage{291} + \subitem {counter\_css\_census03}, \hyperpage{291} + \subitem {counter\_css\_census04}, \hyperpage{292} + \subitem {counter\_css\_census05}, \hyperpage{292} + \subitem {counter\_css\_census06}, \hyperpage{292} + \subitem {counter\_css\_census07}, \hyperpage{292} + \subitem {counter\_css\_census08}, \hyperpage{293} + \subitem {counter\_css\_census09}, \hyperpage{293} + \subitem {counter\_css\_census10}, \hyperpage{293} \subitem {counter\_css\_completely\_false\_recip\_comiss}, - \hyperpage{291} + \hyperpage{293} \subitem {counter\_css\_completely\_false\_recip\_omiss}, - \hyperpage{292} - \subitem {counter\_css\_mixed\_recip}, \hyperpage{292} + \hyperpage{294} + \subitem {counter\_css\_mixed\_recip}, \hyperpage{294} \subitem {counter\_css\_partially\_false\_recip\_commi}, - \hyperpage{292} + \hyperpage{294} \subitem {counter\_css\_partially\_false\_recip\_omiss}, - \hyperpage{293} - \subitem {CSS\_APPEND}, \hyperpage{286} - \subitem {CSS\_CASE\_ELSE}, \hyperpage{287} - \subitem {CSS\_CASE\_PERCEIVED}, \hyperpage{287} - \subitem {CSS\_CASE\_TRUTH}, \hyperpage{287} - \subitem {CSS\_CHECK\_SIZE}, \hyperpage{287} - \subitem {CSS\_CHECK\_SIZE\_INIT}, \hyperpage{287} - \subitem {CSS\_MATCH\_TYPE}, \hyperpage{288} - \subitem {CSS\_NET\_COUNTER\_LAMBDA\_INIT}, \hyperpage{288} - \subitem {CSS\_PERCEIVED\_CELLS}, \hyperpage{288} - \subitem {CSS\_SIZE}, \hyperpage{288} - \subitem {CSS\_TRUE\_CELLS}, \hyperpage{289} + \hyperpage{295} + \subitem {CSS\_APPEND}, \hyperpage{288} + \subitem {CSS\_CASE\_ELSE}, \hyperpage{289} + \subitem {CSS\_CASE\_PERCEIVED}, \hyperpage{289} + \subitem {CSS\_CASE\_TRUTH}, \hyperpage{289} + \subitem {CSS\_CHECK\_SIZE}, \hyperpage{289} + \subitem {CSS\_CHECK\_SIZE\_INIT}, \hyperpage{289} + \subitem {CSS\_MATCH\_TYPE}, \hyperpage{290} + \subitem {CSS\_NET\_COUNTER\_LAMBDA\_INIT}, \hyperpage{290} + \subitem {CSS\_PERCEIVED\_CELLS}, \hyperpage{290} + \subitem {CSS\_SIZE}, \hyperpage{290} + \subitem {CSS\_TRUE\_CELLS}, \hyperpage{291} \item {network.hpp} - \subitem {BARRY\_ZERO\_NETWORK}, \hyperpage{296} - \subitem {BARRY\_ZERO\_NETWORK\_DENSE}, \hyperpage{296} - \subitem {NET\_C\_DATA\_IDX}, \hyperpage{297} - \subitem {NET\_C\_DATA\_NUM}, \hyperpage{297} - \subitem {NetCounter}, \hyperpage{298} - \subitem {NetCounters}, \hyperpage{298} - \subitem {NetModel}, \hyperpage{299} - \subitem {NetRule}, \hyperpage{299} - \subitem {NetRules}, \hyperpage{299} - \subitem {NetStatsCounter}, \hyperpage{299} - \subitem {NetSupport}, \hyperpage{299} - \subitem {Network}, \hyperpage{299} - \subitem {NETWORK\_COUNTER}, \hyperpage{297} - \subitem {NETWORK\_COUNTER\_LAMBDA}, \hyperpage{297} - \subitem {NETWORK\_RULE}, \hyperpage{297} - \subitem {NETWORK\_RULE\_LAMBDA}, \hyperpage{298} - \subitem {NetworkDense}, \hyperpage{300} - \subitem {NETWORKDENSE\_COUNTER\_LAMBDA}, \hyperpage{298} - \subitem {rules\_zerodiag}, \hyperpage{300} + \subitem {BARRY\_ZERO\_NETWORK}, \hyperpage{298} + \subitem {BARRY\_ZERO\_NETWORK\_DENSE}, \hyperpage{298} + \subitem {NET\_C\_DATA\_IDX}, \hyperpage{299} + \subitem {NET\_C\_DATA\_NUM}, \hyperpage{299} + \subitem {NetCounter}, \hyperpage{300} + \subitem {NetCounters}, \hyperpage{300} + \subitem {NetModel}, \hyperpage{301} + \subitem {NetRule}, \hyperpage{301} + \subitem {NetRules}, \hyperpage{301} + \subitem {NetStatsCounter}, \hyperpage{301} + \subitem {NetSupport}, \hyperpage{301} + \subitem {Network}, \hyperpage{301} + \subitem {NETWORK\_COUNTER}, \hyperpage{299} + \subitem {NETWORK\_COUNTER\_LAMBDA}, \hyperpage{299} + \subitem {NETWORK\_RULE}, \hyperpage{299} + \subitem {NETWORK\_RULE\_LAMBDA}, \hyperpage{300} + \subitem {NetworkDense}, \hyperpage{302} + \subitem {NETWORKDENSE\_COUNTER\_LAMBDA}, \hyperpage{300} + \subitem {rules\_zerodiag}, \hyperpage{302} \item {NETWORK\_COUNTER} \subitem {Network counters}, \hyperpage{34} - \subitem {network.hpp}, \hyperpage{297} + \subitem {network.hpp}, \hyperpage{299} \item {NETWORK\_COUNTER\_LAMBDA} - \subitem {network.hpp}, \hyperpage{297} + \subitem {network.hpp}, \hyperpage{299} \item {NETWORK\_RULE} - \subitem {network.hpp}, \hyperpage{297} + \subitem {network.hpp}, \hyperpage{299} \item {NETWORK\_RULE\_LAMBDA} - \subitem {network.hpp}, \hyperpage{298} - \item {NetworkData}, \hyperpage{199} - \subitem {$\sim$NetworkData}, \hyperpage{200} - \subitem {directed}, \hyperpage{200} - \subitem {NetworkData}, \hyperpage{199, 200} - \subitem {vertex\_attr}, \hyperpage{200} - \item {NetworkDense} \subitem {network.hpp}, \hyperpage{300} + \item {NetworkData}, \hyperpage{200} + \subitem {$\sim$NetworkData}, \hyperpage{202} + \subitem {directed}, \hyperpage{202} + \subitem {NetworkData}, \hyperpage{201} + \subitem {vertex\_attr}, \hyperpage{202} + \item {NetworkDense} + \subitem {network.hpp}, \hyperpage{302} \item {NETWORKDENSE\_COUNTER\_LAMBDA} - \subitem {network.hpp}, \hyperpage{298} + \subitem {network.hpp}, \hyperpage{300} \item {next} - \subitem {Progress}, \hyperpage{221} + \subitem {Progress}, \hyperpage{222} \item {nfunctions} \subitem {Flock}, \hyperpage{156} \subitem {Geese}, \hyperpage{173} @@ -2068,41 +1986,41 @@ \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{67} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{88} - \item {Node}, \hyperpage{201} - \subitem {$\sim$Node}, \hyperpage{203} - \subitem {annotations}, \hyperpage{204} - \subitem {array}, \hyperpage{204} - \subitem {arrays}, \hyperpage{204} - \subitem {duplication}, \hyperpage{205} - \subitem {get\_parent}, \hyperpage{203} - \subitem {id}, \hyperpage{205} - \subitem {is\_leaf}, \hyperpage{204} - \subitem {narray}, \hyperpage{205} - \subitem {Node}, \hyperpage{202, 203} - \subitem {noffspring}, \hyperpage{204} - \subitem {offspring}, \hyperpage{205} - \subitem {ord}, \hyperpage{205} - \subitem {parent}, \hyperpage{206} - \subitem {probability}, \hyperpage{206} - \subitem {subtree\_prob}, \hyperpage{206} - \subitem {visited}, \hyperpage{206} - \item {NodeData}, \hyperpage{207} - \subitem {blengths}, \hyperpage{207} - \subitem {duplication}, \hyperpage{208} - \subitem {NodeData}, \hyperpage{207} - \subitem {states}, \hyperpage{208} + \item {Node}, \hyperpage{202} + \subitem {$\sim$Node}, \hyperpage{204} + \subitem {annotations}, \hyperpage{205} + \subitem {array}, \hyperpage{205} + \subitem {arrays}, \hyperpage{206} + \subitem {duplication}, \hyperpage{206} + \subitem {get\_parent}, \hyperpage{205} + \subitem {id}, \hyperpage{206} + \subitem {is\_leaf}, \hyperpage{205} + \subitem {narray}, \hyperpage{206} + \subitem {Node}, \hyperpage{203, 204} + \subitem {noffspring}, \hyperpage{205} + \subitem {offspring}, \hyperpage{206} + \subitem {ord}, \hyperpage{207} + \subitem {parent}, \hyperpage{207} + \subitem {probability}, \hyperpage{207} + \subitem {subtree\_prob}, \hyperpage{207} + \subitem {visited}, \hyperpage{207} + \item {NodeData}, \hyperpage{208} + \subitem {blengths}, \hyperpage{209} + \subitem {duplication}, \hyperpage{209} + \subitem {NodeData}, \hyperpage{208} + \subitem {states}, \hyperpage{209} \item {nodes} \subitem {Geese}, \hyperpage{173} \item {noexcept} - \subitem {counters-\/meat.hpp}, \hyperpage{284} + \subitem {counters-\/meat.hpp}, \hyperpage{286} \item {noffspring} - \subitem {Node}, \hyperpage{204} + \subitem {Node}, \hyperpage{205} \item {NONE} \subitem {CHECK}, \hyperpage{56} \subitem {EXISTS}, \hyperpage{58} \item {normalizing\_constants} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{193} + \hyperpage{194} \item {nrow} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{67} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -2110,21 +2028,21 @@ \subitem {Phylo rules}, \hyperpage{41} \item {nrules} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{187} + \hyperpage{188} \item {nrules\_dyn} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{187} + \hyperpage{188} \item {nterms} \subitem {Flock}, \hyperpage{154} \subitem {Geese}, \hyperpage{168} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{187} + \hyperpage{188} \item {ntrees} \subitem {Flock}, \hyperpage{154} \item {num} \subitem {Phylo rules}, \hyperpage{41, 42} \item {numbers} - \subitem {NetCounterData}, \hyperpage{198} + \subitem {NetCounterData}, \hyperpage{200} \subitem {Phylo rules}, \hyperpage{45, 46} \indexspace @@ -2134,7 +2052,7 @@ \item {observed\_counts} \subitem {Geese}, \hyperpage{169} \item {offspring} - \subitem {Node}, \hyperpage{205} + \subitem {Node}, \hyperpage{206} \item {ONE} \subitem {CHECK}, \hyperpage{56} \subitem {EXISTS}, \hyperpage{58} @@ -2203,7 +2121,7 @@ \hyperpage{116} \item {operator()} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{67} - \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{249} + \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{251} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{88, 89} \subitem {BArrayDenseCol$<$ Cell\_Type, Data\_Type $>$}, @@ -2216,11 +2134,11 @@ \hyperpage{108} \subitem {Flock}, \hyperpage{154} \subitem {Phylo rules}, \hyperpage{42} - \subitem {PhyloCounterData}, \hyperpage{210} - \subitem {PhyloRuleDynData}, \hyperpage{212} - \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{224} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{227} - \subitem {vecHasher$<$ T $>$}, \hyperpage{244} + \subitem {PhyloCounterData}, \hyperpage{211} + \subitem {PhyloRuleDynData}, \hyperpage{213} + \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{225} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{228} + \subitem {vecHasher$<$ T $>$}, \hyperpage{245} \item {operator+=} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{68} \subitem {BArrayCell$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{75} @@ -2267,8 +2185,8 @@ \subitem {Counters$<$ Array\_Type, Data\_Type $>$}, \hyperpage{137} \subitem {Geese}, \hyperpage{169} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{187} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{228} + \hyperpage{188} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{229} \item {operator==} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{69} \subitem {BArrayCell$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{76} @@ -2288,11 +2206,11 @@ \subitem {Cell$<$ Cell\_Type $>$}, \hyperpage{125} \item {operator[]} \subitem {Counters$<$ Array\_Type, Data\_Type $>$}, \hyperpage{138} - \subitem {PhyloCounterData}, \hyperpage{210} + \subitem {PhyloCounterData}, \hyperpage{211} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{217} + \hyperpage{218} \item {ord} - \subitem {Node}, \hyperpage{205} + \subitem {Node}, \hyperpage{207} \item {out\_of\_range} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{69} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -2300,13 +2218,11 @@ \indexspace - \item {params} - \subitem {model-\/meat.hpp}, \hyperpage{318} \item {params\_last} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{193} + \hyperpage{195} \item {parent} - \subitem {Node}, \hyperpage{206} + \subitem {Node}, \hyperpage{207} \item {parse\_polytomies} \subitem {Flock}, \hyperpage{155} \subitem {Geese}, \hyperpage{169} @@ -2382,93 +2298,93 @@ \item {PHYLO\_RULE\_DYN\_LAMBDA} \subitem {Counting}, \hyperpage{17} \item {PhyloArray} - \subitem {geese-\/types.hpp}, \hyperpage{340} + \subitem {geese-\/types.hpp}, \hyperpage{324} \item {PhyloCounter} - \subitem {geese-\/types.hpp}, \hyperpage{340} - \item {PhyloCounterData}, \hyperpage{208} - \subitem {at}, \hyperpage{209} - \subitem {begin}, \hyperpage{209} - \subitem {empty}, \hyperpage{209} - \subitem {end}, \hyperpage{210} - \subitem {get\_counters}, \hyperpage{210} - \subitem {operator()}, \hyperpage{210} - \subitem {operator[]}, \hyperpage{210} - \subitem {PhyloCounterData}, \hyperpage{209} - \subitem {push\_back}, \hyperpage{210} - \subitem {reserve}, \hyperpage{210} - \subitem {shrink\_to\_fit}, \hyperpage{211} - \subitem {size}, \hyperpage{211} + \subitem {geese-\/types.hpp}, \hyperpage{324} + \item {PhyloCounterData}, \hyperpage{209} + \subitem {at}, \hyperpage{210} + \subitem {begin}, \hyperpage{210} + \subitem {empty}, \hyperpage{210} + \subitem {end}, \hyperpage{211} + \subitem {get\_counters}, \hyperpage{211} + \subitem {operator()}, \hyperpage{211} + \subitem {operator[]}, \hyperpage{211} + \subitem {PhyloCounterData}, \hyperpage{210} + \subitem {push\_back}, \hyperpage{211} + \subitem {reserve}, \hyperpage{211} + \subitem {shrink\_to\_fit}, \hyperpage{212} + \subitem {size}, \hyperpage{212} \item {PhyloCounters} - \subitem {geese-\/types.hpp}, \hyperpage{341} + \subitem {geese-\/types.hpp}, \hyperpage{325} \item {PhyloModel} - \subitem {geese-\/types.hpp}, \hyperpage{341} + \subitem {geese-\/types.hpp}, \hyperpage{325} \item {PhyloPowerSet} - \subitem {geese-\/types.hpp}, \hyperpage{341} + \subitem {geese-\/types.hpp}, \hyperpage{325} \item {PhyloRule} - \subitem {geese-\/types.hpp}, \hyperpage{341} + \subitem {geese-\/types.hpp}, \hyperpage{325} \item {PhyloRuleData} - \subitem {geese-\/types.hpp}, \hyperpage{341} + \subitem {geese-\/types.hpp}, \hyperpage{325} \item {PhyloRuleDyn} - \subitem {geese-\/types.hpp}, \hyperpage{341} - \item {PhyloRuleDynData}, \hyperpage{211} - \subitem {$\sim$PhyloRuleDynData}, \hyperpage{212} - \subitem {counts}, \hyperpage{212} - \subitem {duplication}, \hyperpage{212} - \subitem {lb}, \hyperpage{213} - \subitem {operator()}, \hyperpage{212} - \subitem {PhyloRuleDynData}, \hyperpage{212} - \subitem {pos}, \hyperpage{213} - \subitem {ub}, \hyperpage{213} + \subitem {geese-\/types.hpp}, \hyperpage{325} + \item {PhyloRuleDynData}, \hyperpage{212} + \subitem {$\sim$PhyloRuleDynData}, \hyperpage{213} + \subitem {counts}, \hyperpage{213} + \subitem {duplication}, \hyperpage{213} + \subitem {lb}, \hyperpage{214} + \subitem {operator()}, \hyperpage{213} + \subitem {PhyloRuleDynData}, \hyperpage{213} + \subitem {pos}, \hyperpage{214} + \subitem {ub}, \hyperpage{214} \item {PhyloRules} - \subitem {geese-\/types.hpp}, \hyperpage{342} + \subitem {geese-\/types.hpp}, \hyperpage{326} \item {PhyloRulesDyn} - \subitem {geese-\/types.hpp}, \hyperpage{342} + \subitem {geese-\/types.hpp}, \hyperpage{326} \item {PhyloStatsCounter} - \subitem {geese-\/types.hpp}, \hyperpage{342} + \subitem {geese-\/types.hpp}, \hyperpage{326} \item {PhyloSupport} - \subitem {geese-\/types.hpp}, \hyperpage{342} + \subitem {geese-\/types.hpp}, \hyperpage{326} \item {POS} - \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{254} - \subitem {barraydense-\/meat.hpp}, \hyperpage{256} - \subitem {barraydensecell-\/bones.hpp}, \hyperpage{258} - \subitem {barraydensecell-\/meat.hpp}, \hyperpage{258} - \subitem {barraydensecol-\/bones.hpp}, \hyperpage{259} - \subitem {barraydenserow-\/bones.hpp}, \hyperpage{261} - \subitem {geese-\/types.hpp}, \hyperpage{340} + \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{256} + \subitem {barraydense-\/meat.hpp}, \hyperpage{258} + \subitem {barraydensecell-\/bones.hpp}, \hyperpage{260} + \subitem {barraydensecell-\/meat.hpp}, \hyperpage{260} + \subitem {barraydensecol-\/bones.hpp}, \hyperpage{261} + \subitem {barraydenserow-\/bones.hpp}, \hyperpage{263} + \subitem {geese-\/types.hpp}, \hyperpage{324} \item {pos} - \subitem {PhyloRuleDynData}, \hyperpage{213} + \subitem {PhyloRuleDynData}, \hyperpage{214} \item {POS\_N} - \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{254} - \subitem {barraydense-\/meat.hpp}, \hyperpage{257} - \subitem {barraydensecol-\/bones.hpp}, \hyperpage{259} - \subitem {barraydenserow-\/bones.hpp}, \hyperpage{261} + \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{256} + \subitem {barraydense-\/meat.hpp}, \hyperpage{259} + \subitem {barraydensecol-\/bones.hpp}, \hyperpage{261} + \subitem {barraydenserow-\/bones.hpp}, \hyperpage{263} \item {PowerSet} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{215} + \hyperpage{216} \item {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{213} - \subitem {$\sim$PowerSet}, \hyperpage{215} - \subitem {add\_rule}, \hyperpage{215, 216} - \subitem {begin}, \hyperpage{216} - \subitem {calc}, \hyperpage{216} - \subitem {coordinates\_free}, \hyperpage{218} - \subitem {coordinates\_locked}, \hyperpage{218} - \subitem {data}, \hyperpage{218} - \subitem {EmptyArray}, \hyperpage{218} - \subitem {end}, \hyperpage{216} - \subitem {get\_data}, \hyperpage{216} - \subitem {get\_data\_ptr}, \hyperpage{217} - \subitem {init\_support}, \hyperpage{217} - \subitem {M}, \hyperpage{218} - \subitem {N}, \hyperpage{219} - \subitem {n\_free}, \hyperpage{219} - \subitem {n\_locked}, \hyperpage{219} - \subitem {operator[]}, \hyperpage{217} - \subitem {PowerSet}, \hyperpage{215} - \subitem {reset}, \hyperpage{217} - \subitem {rules}, \hyperpage{219} - \subitem {rules\_deleted}, \hyperpage{219} - \subitem {size}, \hyperpage{217} + \hyperpage{214} + \subitem {$\sim$PowerSet}, \hyperpage{216} + \subitem {add\_rule}, \hyperpage{216, 217} + \subitem {begin}, \hyperpage{217} + \subitem {calc}, \hyperpage{217} + \subitem {coordinates\_free}, \hyperpage{219} + \subitem {coordinates\_locked}, \hyperpage{219} + \subitem {data}, \hyperpage{219} + \subitem {EmptyArray}, \hyperpage{219} + \subitem {end}, \hyperpage{217} + \subitem {get\_data}, \hyperpage{217} + \subitem {get\_data\_ptr}, \hyperpage{218} + \subitem {init\_support}, \hyperpage{218} + \subitem {M}, \hyperpage{219} + \subitem {N}, \hyperpage{220} + \subitem {n\_free}, \hyperpage{220} + \subitem {n\_locked}, \hyperpage{220} + \subitem {operator[]}, \hyperpage{218} + \subitem {PowerSet}, \hyperpage{216} + \subitem {reset}, \hyperpage{218} + \subitem {rules}, \hyperpage{220} + \subitem {rules\_deleted}, \hyperpage{220} + \subitem {size}, \hyperpage{218} \item {predict} \subitem {Geese}, \hyperpage{169} \item {predict\_backend} @@ -2488,10 +2404,10 @@ \subitem {FreqTable$<$ T $>$}, \hyperpage{159} \subitem {Geese}, \hyperpage{170} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{188} + \hyperpage{189} \subitem {Phylo rules}, \hyperpage{42} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{239} + \hyperpage{240} \item {print\_n} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{70} \item {print\_nodes} @@ -2500,169 +2416,154 @@ \subitem {Geese}, \hyperpage{171} \item {print\_stats} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{188} + \hyperpage{189} \item {printf\_barry} - \subitem {barry-\/configuration.hpp}, \hyperpage{265} + \subitem {barry-\/configuration.hpp}, \hyperpage{267} \item {probability} - \subitem {Node}, \hyperpage{206} - \item {probs} - \subitem {model-\/meat.hpp}, \hyperpage{318} - \item {Progress}, \hyperpage{220} - \subitem {$\sim$Progress}, \hyperpage{220} - \subitem {end}, \hyperpage{221} - \subitem {next}, \hyperpage{221} - \subitem {Progress}, \hyperpage{220} + \subitem {Node}, \hyperpage{207} + \item {Progress}, \hyperpage{221} + \subitem {$\sim$Progress}, \hyperpage{221} + \subitem {end}, \hyperpage{222} + \subitem {next}, \hyperpage{222} + \subitem {Progress}, \hyperpage{221} \item {progress.hpp} - \subitem {BARRY\_PROGRESS\_BAR\_WIDTH}, \hyperpage{344} + \subitem {BARRY\_PROGRESS\_BAR\_WIDTH}, \hyperpage{328} \item {pset\_arrays} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{193} - \subitem {model-\/meat.hpp}, \hyperpage{318} + \hyperpage{195} \item {pset\_loc} \subitem {Geese}, \hyperpage{173} \item {pset\_probs} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{194} + \hyperpage{195} \item {pset\_stats} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{194} + \hyperpage{195} \item {push\_back} - \subitem {model-\/meat.hpp}, \hyperpage{312} - \subitem {PhyloCounterData}, \hyperpage{210} + \subitem {PhyloCounterData}, \hyperpage{211} \indexspace - \item {r} - \subitem {model-\/meat.hpp}, \hyperpage{318} - \item {README.md}, \hyperpage{358} + \item {README.md}, \hyperpage{342} \item {reduced\_sequence} \subitem {Geese}, \hyperpage{174} \item {rengine} \subitem {Flock}, \hyperpage{156} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{194} + \hyperpage{196} \item {res} - \subitem {counters-\/meat.hpp}, \hyperpage{284} + \subitem {counters-\/meat.hpp}, \hyperpage{286} \item {reserve} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{70} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{91} \subitem {FreqTable$<$ T $>$}, \hyperpage{159} - \subitem {model-\/meat.hpp}, \hyperpage{312} - \subitem {PhyloCounterData}, \hyperpage{210} + \subitem {PhyloCounterData}, \hyperpage{211} \item {reset} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{217} + \hyperpage{218} \item {reset\_array} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{231} + \hyperpage{232} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{239} + \hyperpage{240} \item {resize} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{70} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{92} \subitem {Entries$<$ Cell\_Type $>$}, \hyperpage{149} - \subitem {statscounter-\/meat.hpp}, \hyperpage{348} + \subitem {statscounter-\/meat.hpp}, \hyperpage{332} \item {return} - \subitem {counters-\/meat.hpp}, \hyperpage{285} - \subitem {model-\/meat.hpp}, \hyperpage{312}, \hyperpage{318} - \subitem {statscounter-\/meat.hpp}, \hyperpage{351} + \subitem {counters-\/meat.hpp}, \hyperpage{287} + \subitem {statscounter-\/meat.hpp}, \hyperpage{335} \item {rhs} - \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{249} + \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{251} \item {rm\_cell} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{70} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{92} \item {ROW} - \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{247} - \subitem {barray-\/meat.hpp}, \hyperpage{251} - \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{254} - \subitem {barraydense-\/meat.hpp}, \hyperpage{257} + \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{249} + \subitem {barray-\/meat.hpp}, \hyperpage{253} + \subitem {barraydense-\/meat-\/operators.hpp}, \hyperpage{256} + \subitem {barraydense-\/meat.hpp}, \hyperpage{259} \item {row} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{70} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{92} \item {Row\_type} - \subitem {typedefs.hpp}, \hyperpage{356} + \subitem {typedefs.hpp}, \hyperpage{340} \item {rowsum} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{92} \item {Rule} - \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{222} - \item {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{221} - \subitem {$\sim$Rule}, \hyperpage{222} - \subitem {D}, \hyperpage{223} - \subitem {get\_description}, \hyperpage{223} - \subitem {get\_name}, \hyperpage{223} - \subitem {operator()}, \hyperpage{224} - \subitem {Rule}, \hyperpage{222} + \subitem {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{223} + \item {Rule$<$ Array\_Type, Data\_Type $>$}, \hyperpage{222} + \subitem {$\sim$Rule}, \hyperpage{223} + \subitem {D}, \hyperpage{224} + \subitem {get\_description}, \hyperpage{224} + \subitem {get\_name}, \hyperpage{224} + \subitem {operator()}, \hyperpage{225} + \subitem {Rule}, \hyperpage{223} \item {rule\_dyn\_limit\_changes} \subitem {Phylo rules}, \hyperpage{42} - \item {rule\_fun\_} - \subitem {model-\/meat.hpp}, \hyperpage{318} \item {rule\_fun\_default} - \subitem {rules-\/bones.hpp}, \hyperpage{345} + \subitem {rules-\/bones.hpp}, \hyperpage{329} \item {Rule\_fun\_type} - \subitem {typedefs.hpp}, \hyperpage{356} + \subitem {typedefs.hpp}, \hyperpage{340} \item {RULE\_FUNCTION} - \subitem {barry.hpp}, \hyperpage{271} - \subitem {geese-\/bones.hpp}, \hyperpage{333} + \subitem {barry.hpp}, \hyperpage{273} + \subitem {geese-\/bones.hpp}, \hyperpage{317} \item {RULE\_LAMBDA} - \subitem {barry.hpp}, \hyperpage{271} + \subitem {barry.hpp}, \hyperpage{273} \item {Rules} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{225} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{226} \item {rules} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{194} - \subitem {model-\/meat.hpp}, \hyperpage{319} + \hyperpage{196} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{219} - \item {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{224} - \subitem {$\sim$Rules}, \hyperpage{225} - \subitem {add\_rule}, \hyperpage{226} - \subitem {begin}, \hyperpage{226} - \subitem {end}, \hyperpage{226} - \subitem {get\_descriptions}, \hyperpage{226} - \subitem {get\_names}, \hyperpage{227} - \subitem {get\_seq}, \hyperpage{227} - \subitem {operator()}, \hyperpage{227} - \subitem {operator=}, \hyperpage{228} - \subitem {Rules}, \hyperpage{225} - \subitem {size}, \hyperpage{228} + \hyperpage{220} + \item {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{225} + \subitem {$\sim$Rules}, \hyperpage{226} + \subitem {add\_rule}, \hyperpage{227} + \subitem {begin}, \hyperpage{227} + \subitem {end}, \hyperpage{227} + \subitem {get\_descriptions}, \hyperpage{227} + \subitem {get\_names}, \hyperpage{228} + \subitem {get\_seq}, \hyperpage{228} + \subitem {operator()}, \hyperpage{228} + \subitem {operator=}, \hyperpage{229} + \subitem {Rules}, \hyperpage{226} + \subitem {size}, \hyperpage{229} \item {rules-\/bones.hpp} - \subitem {rule\_fun\_default}, \hyperpage{345} - \item {rules\_} - \subitem {model-\/meat.hpp}, \hyperpage{319} + \subitem {rule\_fun\_default}, \hyperpage{329} \item {rules\_deleted} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{219} + \hyperpage{220} \item {rules\_dont\_become\_zero} \subitem {Network counters}, \hyperpage{34} \item {rules\_dyn} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{195} - \subitem {model-\/meat.hpp}, \hyperpage{319} + \hyperpage{196} \item {rules\_markov\_fixed} \subitem {Network counters}, \hyperpage{35} \item {rules\_zerodiag} - \subitem {network.hpp}, \hyperpage{300} + \subitem {network.hpp}, \hyperpage{302} \indexspace \item {sample} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{188} + \hyperpage{189} \item {sequence} \subitem {Geese}, \hyperpage{174} \item {set\_counters} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{189} - \subitem {model-\/meat.hpp}, \hyperpage{313} + \hyperpage{190} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{232} + \hyperpage{233} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{239} + \hyperpage{240} \item {set\_data} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{71} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -2673,29 +2574,27 @@ \subitem {DEFM}, \hyperpage{143} \item {set\_rengine} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{189} + \hyperpage{190} \item {set\_rules} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{189} - \subitem {model-\/meat.hpp}, \hyperpage{313} + \hyperpage{190} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{240} + \hyperpage{241} \item {set\_rules\_dyn} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{189} - \subitem {model-\/meat.hpp}, \hyperpage{313} + \hyperpage{190} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{240} + \hyperpage{241} \item {set\_seed} \subitem {Flock}, \hyperpage{155} \subitem {Geese}, \hyperpage{171} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{189} + \hyperpage{191} \item {set\_transform\_model} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{190} + \hyperpage{191} \item {shrink\_to\_fit} - \subitem {PhyloCounterData}, \hyperpage{211} + \subitem {PhyloCounterData}, \hyperpage{212} \item {simulate} \subitem {DEFM}, \hyperpage{143} \subitem {Geese}, \hyperpage{171} @@ -2715,128 +2614,124 @@ \subitem {Counters$<$ Array\_Type, Data\_Type $>$}, \hyperpage{138} \subitem {FreqTable$<$ T $>$}, \hyperpage{160} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{190} - \subitem {model-\/meat.hpp}, \hyperpage{313} - \subitem {PhyloCounterData}, \hyperpage{211} + \hyperpage{191} + \subitem {PhyloCounterData}, \hyperpage{212} \subitem {PowerSet$<$ Array\_Type, Data\_Rule\_Type $>$}, - \hyperpage{217} - \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{228} + \hyperpage{218} + \subitem {Rules$<$ Array\_Type, Data\_Type $>$}, \hyperpage{229} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{232} + \hyperpage{233} \item {size\_unique} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{190} + \hyperpage{192} \item {sort\_array} - \subitem {typedefs.hpp}, \hyperpage{356} + \subitem {typedefs.hpp}, \hyperpage{340} \item {source} \subitem {Entries$<$ Cell\_Type $>$}, \hyperpage{149} \item {states} - \subitem {NodeData}, \hyperpage{208} + \subitem {NodeData}, \hyperpage{209} \item {Statistical Models}, \hyperpage{24} - \item {stats} - \subitem {model-\/meat.hpp}, \hyperpage{319} \item {stats\_support} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{195} + \hyperpage{196} \item {stats\_support\_n\_arrays} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{195} - \subitem {model-\/meat.hpp}, \hyperpage{319} + \hyperpage{197} \item {stats\_target} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{195} + \hyperpage{197} \item {StatsCounter} \subitem {StatsCounter$<$ Array\_Type, Data\_Type $>$}, - \hyperpage{229, 230} - \item {StatsCounter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{228} - \subitem {$\sim$StatsCounter}, \hyperpage{230} - \subitem {add\_counter}, \hyperpage{230} - \subitem {count\_all}, \hyperpage{230} - \subitem {count\_current}, \hyperpage{231} - \subitem {count\_init}, \hyperpage{231} - \subitem {get\_counters}, \hyperpage{231} - \subitem {get\_descriptions}, \hyperpage{231} - \subitem {get\_names}, \hyperpage{231} - \subitem {reset\_array}, \hyperpage{231} - \subitem {set\_counters}, \hyperpage{232} - \subitem {size}, \hyperpage{232} - \subitem {StatsCounter}, \hyperpage{229, 230} + \hyperpage{230, 231} + \item {StatsCounter$<$ Array\_Type, Data\_Type $>$}, \hyperpage{229} + \subitem {$\sim$StatsCounter}, \hyperpage{231} + \subitem {add\_counter}, \hyperpage{231} + \subitem {count\_all}, \hyperpage{231} + \subitem {count\_current}, \hyperpage{232} + \subitem {count\_init}, \hyperpage{232} + \subitem {get\_counters}, \hyperpage{232} + \subitem {get\_descriptions}, \hyperpage{232} + \subitem {get\_names}, \hyperpage{232} + \subitem {reset\_array}, \hyperpage{232} + \subitem {set\_counters}, \hyperpage{233} + \subitem {size}, \hyperpage{233} + \subitem {StatsCounter}, \hyperpage{230, 231} \item {statscounter-\/meat.hpp} - \subitem {clear}, \hyperpage{347} - \subitem {counter}, \hyperpage{349} - \subitem {counter\_deleted}, \hyperpage{350} - \subitem {counters}, \hyperpage{350} - \subitem {counters\_}, \hyperpage{350} - \subitem {current\_stats}, \hyperpage{350} - \subitem {EmptyArray}, \hyperpage{350} - \subitem {f\_}, \hyperpage{351} - \subitem {for}, \hyperpage{347} - \subitem {j}, \hyperpage{351} - \subitem {resize}, \hyperpage{348} - \subitem {return}, \hyperpage{351} - \subitem {STATSCOUNTER\_TEMPLATE}, \hyperpage{347--349} - \subitem {STATSCOUNTER\_TEMPLATE\_ARGS}, \hyperpage{347} - \subitem {STATSCOUNTER\_TYPE}, \hyperpage{347} + \subitem {clear}, \hyperpage{331} + \subitem {counter}, \hyperpage{333} + \subitem {counter\_deleted}, \hyperpage{334} + \subitem {counters}, \hyperpage{334} + \subitem {counters\_}, \hyperpage{334} + \subitem {current\_stats}, \hyperpage{334} + \subitem {EmptyArray}, \hyperpage{334} + \subitem {f\_}, \hyperpage{335} + \subitem {for}, \hyperpage{331} + \subitem {j}, \hyperpage{335} + \subitem {resize}, \hyperpage{332} + \subitem {return}, \hyperpage{335} + \subitem {STATSCOUNTER\_TEMPLATE}, \hyperpage{331--333} + \subitem {STATSCOUNTER\_TEMPLATE\_ARGS}, \hyperpage{331} + \subitem {STATSCOUNTER\_TYPE}, \hyperpage{331} \item {STATSCOUNTER\_TEMPLATE} - \subitem {statscounter-\/meat.hpp}, \hyperpage{347--349} + \subitem {statscounter-\/meat.hpp}, \hyperpage{331--333} \item {STATSCOUNTER\_TEMPLATE\_ARGS} - \subitem {statscounter-\/meat.hpp}, \hyperpage{347} + \subitem {statscounter-\/meat.hpp}, \hyperpage{331} \item {STATSCOUNTER\_TYPE} - \subitem {statscounter-\/meat.hpp}, \hyperpage{347} + \subitem {statscounter-\/meat.hpp}, \hyperpage{331} \item {store\_psets} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{190} + \hyperpage{192} \item {subtree\_prob} - \subitem {Node}, \hyperpage{206} + \subitem {Node}, \hyperpage{207} \item {Support} \subitem {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{234, 235} + \hyperpage{235, 236} \item {Support$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{232} - \subitem {$\sim$Support}, \hyperpage{235} - \subitem {add\_counter}, \hyperpage{235} - \subitem {add\_rule}, \hyperpage{235, 236} - \subitem {add\_rule\_dyn}, \hyperpage{236} - \subitem {calc}, \hyperpage{236} - \subitem {change\_stats}, \hyperpage{240} - \subitem {coordiantes\_n\_free}, \hyperpage{240} - \subitem {coordiantes\_n\_locked}, \hyperpage{241} - \subitem {coordinates\_free}, \hyperpage{241} - \subitem {coordinates\_locked}, \hyperpage{241} - \subitem {current\_stats}, \hyperpage{241} - \subitem {delete\_counters}, \hyperpage{241} - \subitem {delete\_rules}, \hyperpage{242} - \subitem {delete\_rules\_dyn}, \hyperpage{242} - \subitem {eval\_rules\_dyn}, \hyperpage{237} - \subitem {get\_counters}, \hyperpage{237} - \subitem {get\_counts}, \hyperpage{237} - \subitem {get\_current\_stats}, \hyperpage{237} - \subitem {get\_data}, \hyperpage{238} - \subitem {get\_rules}, \hyperpage{238} - \subitem {get\_rules\_dyn}, \hyperpage{238} - \subitem {hashes}, \hyperpage{242} - \subitem {hashes\_initialized}, \hyperpage{242} - \subitem {init\_support}, \hyperpage{238} - \subitem {M}, \hyperpage{242} - \subitem {max\_num\_elements}, \hyperpage{243} - \subitem {N}, \hyperpage{243} - \subitem {n\_counters}, \hyperpage{243} - \subitem {print}, \hyperpage{239} - \subitem {reset\_array}, \hyperpage{239} - \subitem {set\_counters}, \hyperpage{239} - \subitem {set\_rules}, \hyperpage{240} - \subitem {set\_rules\_dyn}, \hyperpage{240} - \subitem {Support}, \hyperpage{234, 235} + \hyperpage{233} + \subitem {$\sim$Support}, \hyperpage{236} + \subitem {add\_counter}, \hyperpage{236} + \subitem {add\_rule}, \hyperpage{236, 237} + \subitem {add\_rule\_dyn}, \hyperpage{237} + \subitem {calc}, \hyperpage{237} + \subitem {change\_stats}, \hyperpage{241} + \subitem {coordiantes\_n\_free}, \hyperpage{241} + \subitem {coordiantes\_n\_locked}, \hyperpage{242} + \subitem {coordinates\_free}, \hyperpage{242} + \subitem {coordinates\_locked}, \hyperpage{242} + \subitem {current\_stats}, \hyperpage{242} + \subitem {delete\_counters}, \hyperpage{242} + \subitem {delete\_rules}, \hyperpage{243} + \subitem {delete\_rules\_dyn}, \hyperpage{243} + \subitem {eval\_rules\_dyn}, \hyperpage{238} + \subitem {get\_counters}, \hyperpage{238} + \subitem {get\_counts}, \hyperpage{238} + \subitem {get\_current\_stats}, \hyperpage{238} + \subitem {get\_data}, \hyperpage{239} + \subitem {get\_rules}, \hyperpage{239} + \subitem {get\_rules\_dyn}, \hyperpage{239} + \subitem {hashes}, \hyperpage{243} + \subitem {hashes\_initialized}, \hyperpage{243} + \subitem {init\_support}, \hyperpage{239} + \subitem {M}, \hyperpage{243} + \subitem {max\_num\_elements}, \hyperpage{244} + \subitem {N}, \hyperpage{244} + \subitem {n\_counters}, \hyperpage{244} + \subitem {print}, \hyperpage{240} + \subitem {reset\_array}, \hyperpage{240} + \subitem {set\_counters}, \hyperpage{240} + \subitem {set\_rules}, \hyperpage{241} + \subitem {set\_rules\_dyn}, \hyperpage{241} + \subitem {Support}, \hyperpage{235, 236} \item {support-\/meat.hpp} - \subitem {BARRY\_SUPPORT\_MEAT\_HPP}, \hyperpage{352} + \subitem {BARRY\_SUPPORT\_MEAT\_HPP}, \hyperpage{336} \item {support\_fun} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{196} + \hyperpage{197} \item {support\_size} \subitem {Flock}, \hyperpage{155} \subitem {Geese}, \hyperpage{171} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{191} + \hyperpage{192} \item {swap\_cells} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{71} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -2854,14 +2749,10 @@ \item {target} \subitem {Entries$<$ Cell\_Type $>$}, \hyperpage{149} - \item {temp\_stats} - \subitem {model-\/meat.hpp}, \hyperpage{313} \item {this} - \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{250} - \item {tmp\_counts} - \subitem {model-\/meat.hpp}, \hyperpage{320} + \subitem {barray-\/meat-\/operators.hpp}, \hyperpage{252} \item {TMP\_HASHER\_CALL} - \subitem {counters-\/meat.hpp}, \hyperpage{275} + \subitem {counters-\/meat.hpp}, \hyperpage{277} \item {toggle\_cell} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{72} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -2872,13 +2763,13 @@ \hyperpage{94} \item {transform\_model} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{191} + \hyperpage{192} \item {transform\_model\_fun} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{196} + \hyperpage{197} \item {transform\_model\_term\_names} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{196} + \hyperpage{198} \item {transpose} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{72} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, @@ -2887,32 +2778,30 @@ \subitem {CHECK}, \hyperpage{56} \subitem {EXISTS}, \hyperpage{58} \item {typedefs.hpp} - \subitem {Col\_type}, \hyperpage{355} - \subitem {Counter\_fun\_type}, \hyperpage{355} - \subitem {Counts\_type}, \hyperpage{355} - \subitem {Hasher\_fun\_type}, \hyperpage{355} - \subitem {MapVec\_type}, \hyperpage{356} - \subitem {Row\_type}, \hyperpage{356} - \subitem {Rule\_fun\_type}, \hyperpage{356} - \subitem {sort\_array}, \hyperpage{356} - \subitem {vec\_equal}, \hyperpage{357} - \subitem {vec\_equal\_approx}, \hyperpage{357} - \subitem {vec\_inner\_prod}, \hyperpage{357, 358} + \subitem {Col\_type}, \hyperpage{339} + \subitem {Counter\_fun\_type}, \hyperpage{339} + \subitem {Counts\_type}, \hyperpage{339} + \subitem {Hasher\_fun\_type}, \hyperpage{339} + \subitem {MapVec\_type}, \hyperpage{340} + \subitem {Row\_type}, \hyperpage{340} + \subitem {Rule\_fun\_type}, \hyperpage{340} + \subitem {sort\_array}, \hyperpage{340} + \subitem {vec\_equal}, \hyperpage{341} + \subitem {vec\_equal\_approx}, \hyperpage{341} + \subitem {vec\_inner\_prod}, \hyperpage{341, 342} \indexspace \item {ub} - \subitem {PhyloRuleDynData}, \hyperpage{213} + \subitem {PhyloRuleDynData}, \hyperpage{214} \item {UKNOWN} \subitem {EXISTS}, \hyperpage{58} \item {UNI\_SUB} - \subitem {counters.hpp}, \hyperpage{323} + \subitem {counters.hpp}, \hyperpage{308} \item {update\_annotations} \subitem {Geese}, \hyperpage{171} \item {update\_normalizing\_constant} - \subitem {model-\/meat.hpp}, \hyperpage{313} - \item {urand} - \subitem {model-\/meat.hpp}, \hyperpage{314} + \subitem {model-\/meat.hpp}, \hyperpage{304} \indexspace @@ -2921,31 +2810,31 @@ \item {value} \subitem {Cell$<$ Cell\_Type $>$}, \hyperpage{125} \item {vec\_diff} - \subitem {geese-\/bones.hpp}, \hyperpage{333} + \subitem {geese-\/bones.hpp}, \hyperpage{317} \item {vec\_equal} - \subitem {typedefs.hpp}, \hyperpage{357} + \subitem {typedefs.hpp}, \hyperpage{341} \item {vec\_equal\_approx} - \subitem {typedefs.hpp}, \hyperpage{357} + \subitem {typedefs.hpp}, \hyperpage{341} \item {vec\_inner\_prod} - \subitem {typedefs.hpp}, \hyperpage{357, 358} - \item {vecHasher$<$ T $>$}, \hyperpage{243} - \subitem {operator()}, \hyperpage{244} + \subitem {typedefs.hpp}, \hyperpage{341, 342} + \item {vecHasher$<$ T $>$}, \hyperpage{244} + \subitem {operator()}, \hyperpage{245} \item {vector\_caster} - \subitem {geese-\/bones.hpp}, \hyperpage{334} + \subitem {geese-\/bones.hpp}, \hyperpage{318} \item {vertex\_attr} - \subitem {NetworkData}, \hyperpage{200} + \subitem {NetworkData}, \hyperpage{202} \item {visited} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{73} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{96} \subitem {Cell$<$ Cell\_Type $>$}, \hyperpage{125} - \subitem {Node}, \hyperpage{206} + \subitem {Node}, \hyperpage{207} \indexspace \item {with\_pset} \subitem {Model$<$ Array\_Type, Data\_Counter\_Type, Data\_Rule\_Type, Data\_Rule\_Dyn\_Type $>$}, - \hyperpage{197} + \hyperpage{198} \indexspace @@ -2957,9 +2846,9 @@ \indexspace \item {ZERO\_CELL} - \subitem {barraydense-\/meat.hpp}, \hyperpage{257} - \subitem {barraydensecol-\/bones.hpp}, \hyperpage{260} - \subitem {barraydenserow-\/bones.hpp}, \hyperpage{261} + \subitem {barraydense-\/meat.hpp}, \hyperpage{259} + \subitem {barraydensecol-\/bones.hpp}, \hyperpage{262} + \subitem {barraydenserow-\/bones.hpp}, \hyperpage{263} \item {zero\_col} \subitem {BArray$<$ Cell\_Type, Data\_Type $>$}, \hyperpage{72} \subitem {BArrayDense$<$ Cell\_Type, Data\_Type $>$}, diff --git a/latex/refman.log b/latex/refman.log index 8796a27e5..a3dc7d018 100644 --- a/latex/refman.log +++ b/latex/refman.log @@ -1,4 +1,4 @@ -This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Alpine Linux) (preloaded format=pdflatex 2023.9.27) 27 SEP 2023 05:36 +This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Alpine Linux) (preloaded format=pdflatex 2023.9.27) 27 SEP 2023 22:53 entering extended mode restricted \write18 enabled. %&-line parsing enabled. @@ -1014,7 +1014,7 @@ LaTeX Font Info: Trying to load font information for T1+pcr on input line 17 File: t1pcr.fd 2001/06/04 font definitions for T1/pcr. ) [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] -[23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36 +[23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34 ] Package hyperref Info: Option `pageanchor' set `true' on input line 175. @@ -1192,7 +1192,7 @@ hylo.pdf pdfTeX warning: pdflatex (file ./group__rules-phylo.pdf): PDF inclusion: multip le pdfs with page group included in a single page > - + File: group__rules-phylo.pdf Graphic file (type pdf) Package pdftex.def Info: group__rules-phylo.pdf used on input line 13. @@ -1235,7 +1235,7 @@ Underfull \hbox (badness 10000) detected at line 470 pdfTeX warning: pdflatex (file ./group__counters-phylo.pdf): PDF inclusion: mul tiple pdfs with page group included in a single page > - + File: group__counters-phylo.pdf Graphic file (type pdf) Package pdftex.def Info: group__counters-phylo.pdf used on input line 13. @@ -1866,7 +1866,7 @@ Package hyperref Warning: Token not allowed in a PDF string (Unicode): pdfTeX warning: pdflatex (file ./class_const_b_array_row_iter__coll__graph.pdf) : PDF inclusion: multiple pdfs with page group included in a single page > - File: class_const_b_array_row_iter__coll__graph.pdf Graphic file (type pdf) @@ -1957,7 +1957,7 @@ Underfull \hbox (badness 10000) detected at line 235 pdfTeX warning: pdflatex (file ./class_d_e_f_m__inherit__graph.pdf): PDF inclus ion: multiple pdfs with page group included in a single page > - + File: class_d_e_f_m__inherit__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_d_e_f_m__inherit__graph.pdf used on input line @@ -1968,7 +1968,7 @@ Package pdftex.def Info: class_d_e_f_m__inherit__graph.pdf used on input line pdfTeX warning: pdflatex (file ./class_d_e_f_m__coll__graph.pdf): PDF inclusion : multiple pdfs with page group included in a single page > - + File: class_d_e_f_m__coll__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_d_e_f_m__coll__graph.pdf used on input line 24. @@ -1981,7 +1981,7 @@ m_rule_data__inherit__graph.pdf pdfTeX warning: pdflatex (file ./class_d_e_f_m_rule_data__inherit__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: class_d_e_f_m_rule_data__inherit__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_d_e_f_m_rule_data__inherit__graph.pdf used on i @@ -1993,7 +1993,7 @@ rit__graph.pdf pdfTeX warning: pdflatex (file ./class_d_e_f_m_rule_dyn_data__inherit__graph.pd f): PDF inclusion: multiple pdfs with page group included in a single page > - 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(pdftex.def) Requested size: 180.0pt x 156.00162pt. [146] <./class_d_e_f_m_rule_dyn_data__coll__graph.pdf> - + File: class_d_e_f_m_rule_dyn_data__coll__graph.pdf Graphic file (type pdf) @@ -2116,17 +2116,12 @@ Package hyperref Warning: Token not allowed in a PDF string (Unicode): pdfTeX warning: pdflatex (file ./class_model__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: class_model__coll__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_model__coll__graph.pdf used on input line 19. (pdftex.def) Requested size: 350.0pt x 212.75758pt. [174] -Underfull \hbox (badness 3354) in paragraph at lines 33--35 -[][] \T1/phv/m/n/10 (const []$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Array[]_[][]Ty -pe, [], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/10 >$ - [] - Package Fancyhdr Warning: \headheight is too small (12.0pt): Make it at least 22.16548pt. @@ -2170,8 +2165,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 318--320 -| \T1/pcr/m/n/8 const []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [] -, [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$ +| \T1/pcr/m/n/8 const []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Da +ta[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][] +Dyn[]_[][]Type $\OML/cmm/m/it/8 >$ [] [179] @@ -2183,16 +2179,17 @@ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ Underfull \hbox (badness 10000) in paragraph at lines 329--331 -\T1/pcr/m/n/8 virtual []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], - [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 :: -$\OMS/cmsy/m/n/8 ^^X$[] \T1/pcr/m/n/8 ( +\T1/pcr/m/n/8 virtual []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Dat +a[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]D +yn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::$\OMS/cmsy/m/n/8 ^^X$[] \T1/ +pcr/m/n/8 ( [] Underfull \hbox (badness 10000) in paragraph at lines 343--345 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] @@ -2201,917 +2198,950 @@ Underfull \hbox (badness 10000) detected at line 357 [] -Underfull \hbox (badness 10000) in paragraph at lines 364--366 +Underfull \hbox (badness 10000) in paragraph at lines 368--370 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] [180] -Underfull \hbox (badness 10000) in paragraph at lines 371--373 +Underfull \hbox (badness 10000) in paragraph at lines 379--381 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 378--380 +Underfull \hbox (badness 10000) in paragraph at lines 390--392 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 385--387 +Underfull \hbox (badness 10000) in paragraph at lines 401--403 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 392--394 +Underfull \hbox (badness 10000) in paragraph at lines 412--414 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 399--401 +Underfull \hbox (badness 10000) in paragraph at lines 419--421 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 399--401 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add -[]_[]rule[]_[]dyn +Underfull \hbox (badness 10000) in paragraph at lines 419--421 +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add[]_[]rule[]_[]dyn [] - -Underfull \hbox (badness 10000) in paragraph at lines 406--408 +[181] +Underfull \hbox (badness 10000) in paragraph at lines 430--432 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 406--408 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add -[]_[]rule[]_[]dyn +Underfull \hbox (badness 10000) in paragraph at lines 430--432 +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add[]_[]rule[]_[]dyn [] -[181] -Underfull \hbox (badness 10000) in paragraph at lines 413--415 + +Underfull \hbox (badness 10000) in paragraph at lines 441--443 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 413--415 +Underfull \hbox (badness 10000) in paragraph at lines 441--443 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::string $\OM -L/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[] -_[][] +L/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] +Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 420--422 +Underfull \hbox (badness 10000) in paragraph at lines 452--454 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] - -Overfull \vbox (21.42883pt too high) has occurred while \output is active [] - - [182] -Underfull \hbox (badness 10000) detected at line 440 +Underfull \hbox (badness 10000) detected at line 472 [][][] [] -Underfull \hbox (badness 10000) in paragraph at lines 447--449 +Underfull \hbox (badness 10000) in paragraph at lines 483--485 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 447--449 +Underfull \hbox (badness 10000) in paragraph at lines 483--485 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m -/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[][]Dy -n[]_[][] +/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, D +ata[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 454--456 +Underfull \hbox (badness 10000) in paragraph at lines 494--496 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 454--456 +Underfull \hbox (badness 10000) in paragraph at lines 494--496 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c -mm/m/it/8 >$$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[ -][]Type, [], [], Data[]_[][]Rule[]_[][]Dyn[]_[][] +mm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_ +[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][ +]Rule[]_[][]Dyn[] [] -Underfull \hbox (badness 10000) in paragraph at lines 461--463 +Underfull \hbox (badness 10000) in paragraph at lines 505--507 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 461--463 -[]$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,[]$\OML/cmm/m/it/8 >$$\OMS/ -cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], +Underfull \hbox (badness 10000) in paragraph at lines 505--507 +[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] +Type $\OML/cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/ +n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[] [] -Underfull \hbox (badness 10000) in paragraph at lines 468--470 +Underfull \hbox (badness 10000) in paragraph at lines 516--518 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 468--470 -\T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], -[], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::g -et[]_[]norm[]_[] +Underfull \hbox (badness 10000) in paragraph at lines 516--518 +\T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data +[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dy +n[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::get[]_[]norm[]_[] [] - -Underfull \hbox (badness 10000) in paragraph at lines 475--477 +[183] +Underfull \hbox (badness 10000) in paragraph at lines 527--529 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 475--477 -\T1/pcr/m/n/8 const std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] -Type $\OML/cmm/m/it/8 >$$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n -/8 Array[]_[][]Type, [], [], Data[] +Underfull \hbox (badness 10000) in paragraph at lines 538--540 +\T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 482--484 -\T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +Underfull \hbox (badness 10000) in paragraph at lines 538--540 +\T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML +/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type $\OML/cmm/m/it/8 >$ $>$ $\OMS/cms +y/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]C +ounter[]_[][]Type, Data[]_[][]Rule[]_[][] [] -[183] -Underfull \hbox (badness 10000) in paragraph at lines 489--491 + +Underfull \hbox (badness 10000) in paragraph at lines 549--551 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 489--491 +Underfull \hbox (badness 10000) in paragraph at lines 549--551 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML -/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$ $>$$\OMS/cmsy/m/n/8 ^^C$ -[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], +/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ $\OMS/cmsy/m/n/8 ^^ +C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ +][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 496--498 +Underfull \hbox (badness 10000) in paragraph at lines 560--562 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 496--498 +Underfull \hbox (badness 10000) in paragraph at lines 560--562 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML -/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$ $>$$\OMS/cmsy/m/n/8 ^^C$ -[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], +/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ $\OMS/cmsy/m/n/8 ^^ +C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ +][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 507--509 +Underfull \hbox (badness 10000) in paragraph at lines 575--577 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 507--509 +Underfull \hbox (badness 10000) in paragraph at lines 575--577 \T1/pcr/m/n/8 const std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML -/cmm/m/it/8 >$$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[] -_[][]Type, [], [], Data[]_[][] +/cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[ +]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[ +][] [] - -Underfull \hbox (badness 10000) in paragraph at lines 514--516 +[184] +Underfull \hbox (badness 10000) in paragraph at lines 586--588 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 514--516 -\T1/pcr/m/n/8 const std[]::mt19937$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \ -T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type +Underfull \hbox (badness 10000) in paragraph at lines 586--588 +\T1/pcr/m/n/8 const std[]::mt19937 $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ +\T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[ +]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type [] -Underfull \hbox (badness 10000) in paragraph at lines 521--523 +Underfull \hbox (badness 10000) in paragraph at lines 597--599 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -[184] -Underfull \hbox (badness 10000) in paragraph at lines 528--530 + +Underfull \hbox (badness 10000) in paragraph at lines 597--599 +[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Rule[]_[][]Typ +e $\OML/cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 + Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, + [] + + +Underfull \hbox (badness 10000) in paragraph at lines 608--610 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 528--530 -[]$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,Data[]_[][]Rule[]_[][]Dyn[] -_[][]Type$\OML/cmm/m/it/8 >$$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr -/m/n/8 Array[]_[][]Type, [], [], +Underfull \hbox (badness 10000) in paragraph at lines 608--610 +[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn +[]_[][]Type $\OML/cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1 +/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[ +][] [] -Underfull \hbox (badness 10000) in paragraph at lines 535--537 +Underfull \hbox (badness 10000) in paragraph at lines 619--621 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 535--537 +Underfull \hbox (badness 10000) in paragraph at lines 619--621 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML -/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$$\OMS/cmsy/m/n/8 ^^C -$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], +/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ $\OMS/cmsy/m/n/8 ^^ +C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ +][]Type, Data[]_[][]Rule[]_[][]Type, [] - -Underfull \hbox (badness 10000) in paragraph at lines 542--544 +[185] +Underfull \hbox (badness 10000) in paragraph at lines 630--632 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 542--544 +Underfull \hbox (badness 10000) in paragraph at lines 630--632 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML -/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$$\OMS/cmsy/m/n/8 ^^C -$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], +/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ $\OMS/cmsy/m/n/8 ^^ +C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[ +][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 553--555 +Underfull \hbox (badness 10000) in paragraph at lines 645--647 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 553--555 -[]$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,[],[],Data[]_[][]Rule[]_[][ -]Dyn[]_[][]Type$\OML/cmm/m/it/8 >$$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \ -T1/pcr/m/n/8 Array[]_[][]Type, +Underfull \hbox (badness 10000) in paragraph at lines 645--647 +[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] +Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cm +m/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[] [] -Underfull \hbox (badness 10000) in paragraph at lines 560--562 +Underfull \hbox (badness 10000) in paragraph at lines 656--658 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 560--562 -\T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], -[], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::l -ikelihood +Underfull \hbox (badness 10000) in paragraph at lines 656--658 +\T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data +[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dy +n[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::likelihood [] -[185] -Underfull \hbox (badness 10000) in paragraph at lines 567--569 +[186] +Underfull \hbox (badness 10000) in paragraph at lines 667--669 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 567--569 -\T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], -[], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::l -ikelihood +Underfull \hbox (badness 10000) in paragraph at lines 667--669 +\T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data +[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dy +n[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::likelihood [] -Underfull \hbox (badness 10000) in paragraph at lines 574--576 +Underfull \hbox (badness 10000) in paragraph at lines 678--680 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 574--576 -\T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], -[], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::l -ikelihood +Underfull \hbox (badness 10000) in paragraph at lines 678--680 +\T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data +[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dy +n[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::likelihood [] -Underfull \hbox (badness 10000) in paragraph at lines 581--583 +Underfull \hbox (badness 10000) in paragraph at lines 689--691 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 581--583 -\T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], -[], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::l -ikelihood +Underfull \hbox (badness 10000) in paragraph at lines 689--691 +\T1/pcr/m/n/8 double []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data +[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dy +n[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::likelihood [] -Underfull \hbox (badness 10000) in paragraph at lines 588--590 +Underfull \hbox (badness 10000) in paragraph at lines 700--702 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -[186] -Underfull \hbox (badness 10000) in paragraph at lines 595--597 +[187] +Underfull \hbox (badness 10000) in paragraph at lines 711--713 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 595--597 +Underfull \hbox (badness 10000) in paragraph at lines 711--713 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, -[], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 - ::nrules ( ) +Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] +[]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::nrules [] -Underfull \hbox (badness 10000) in paragraph at lines 602--604 +Underfull \hbox (badness 10000) in paragraph at lines 722--724 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 602--604 +Underfull \hbox (badness 10000) in paragraph at lines 722--724 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, -[], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 - ::nrules[]_[]dyn +Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] +[]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::nrules[]_[]dyn [] -Underfull \hbox (badness 10000) in paragraph at lines 609--611 +Underfull \hbox (badness 10000) in paragraph at lines 733--735 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 609--611 +Underfull \hbox (badness 10000) in paragraph at lines 733--735 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, -[], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 - ::nterms ( ) +Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] +[]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::nterms [] -Underfull \hbox (badness 10000) in paragraph at lines 616--618 +Underfull \hbox (badness 10000) in paragraph at lines 744--746 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 616--618 -[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[] -_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \ -T1/pcr/m/n/8 Array[]_[][] +Underfull \hbox (badness 10000) in paragraph at lines 744--746 +[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] +Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cm +m/m/it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 616--618 -| \T1/pcr/m/n/8 const []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [] -, [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$ +Underfull \hbox (badness 10000) in paragraph at lines 744--746 +| \T1/pcr/m/n/8 const []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Da +ta[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][] +Dyn[]_[][]Type $\OML/cmm/m/it/8 >$ [] -[187] -Underfull \hbox (badness 10000) in paragraph at lines 627--629 + +Underfull \hbox (badness 10000) in paragraph at lines 755--757 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] - -Underfull \hbox (badness 10000) in paragraph at lines 642--644 +[188] +Underfull \hbox (badness 10000) in paragraph at lines 770--772 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 649--651 +Underfull \hbox (badness 10000) in paragraph at lines 781--783 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 649--651 +Underfull \hbox (badness 10000) in paragraph at lines 781--783 \T1/pcr/m/n/8 Array[]_[][]Type []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] -Type, [], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr -/m/n/8 ::sample +Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rul +e[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::sample [] -Underfull \hbox (badness 10000) in paragraph at lines 656--658 +Underfull \hbox (badness 10000) in paragraph at lines 792--794 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 656--658 +Underfull \hbox (badness 10000) in paragraph at lines 792--794 \T1/pcr/m/n/8 Array[]_[][]Type []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] -Type, [], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr -/m/n/8 ::sample +Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rul +e[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::sample [] -Underfull \hbox (badness 10000) in paragraph at lines 667--669 +Underfull \hbox (badness 10000) in paragraph at lines 803--805 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 667--669 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::set -[]_[]counters +Underfull \hbox (badness 10000) in paragraph at lines 803--805 +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::set[]_[]counters [] -[188] -Underfull \hbox (badness 10000) in paragraph at lines 674--676 +[189] +Underfull \hbox (badness 10000) in paragraph at lines 814--816 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 685--687 +Underfull \hbox (badness 10000) in paragraph at lines 825--827 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 692--694 +Underfull \hbox (badness 10000) in paragraph at lines 836--838 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 692--694 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::set -[]_[]rules[]_[]dyn +Underfull \hbox (badness 10000) in paragraph at lines 836--838 +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::set[]_[]rules[]_[]dyn [] -Underfull \hbox (badness 10000) in paragraph at lines 699--701 +Underfull \hbox (badness 10000) in paragraph at lines 847--849 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -[189] -Underfull \hbox (badness 10000) in paragraph at lines 710--712 +[190] +Underfull \hbox (badness 10000) in paragraph at lines 858--860 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 734--736 +Underfull \hbox (badness 10000) in paragraph at lines 886--888 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 734--736 +Overfull \hbox (17.7145pt too wide) in paragraph at lines 886--888 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, -[], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 - ::size ( ) +Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] +[]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::size [inline], [] - -Underfull \hbox (badness 10000) in paragraph at lines 741--743 +[191] +Underfull \hbox (badness 10000) in paragraph at lines 897--899 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 741--743 +Underfull \hbox (badness 10000) in paragraph at lines 897--899 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, -[], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 - ::size[]_[]unique +Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] +[]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::size[]_[]unique [] -Underfull \hbox (badness 10000) in paragraph at lines 748--750 +Underfull \hbox (badness 10000) in paragraph at lines 908--910 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 748--750 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::sto -re[]_[]psets ( +Underfull \hbox (badness 10000) in paragraph at lines 908--910 +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::store[]_[]psets [] -[190] -Underfull \hbox (badness 10000) in paragraph at lines 755--757 + +Underfull \hbox (badness 10000) in paragraph at lines 919--921 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ -e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ -][]Type = bool, typename Data[]_[][] +e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ +e , typename [] -Underfull \hbox (badness 10000) in paragraph at lines 755--757 +Underfull \hbox (badness 10000) in paragraph at lines 919--921 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, -[], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 - ::support[]_[] +Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] +[]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::support[]_[] [] -Underfull \hbox (badness 10000) in paragraph at lines 762--764 +Underfull \hbox (badness 10000) in paragraph at lines 930--932 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 762--764 +Underfull \hbox (badness 10000) in paragraph at lines 930--932 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/i -t/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[][]Dyn[ -]_[][]Type +t/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Dat +a[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type [] -Underfull \hbox (badness 10000) in paragraph at lines 772--774 +Underfull \hbox (badness 10000) in paragraph at lines 940--942 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 772--774 +Underfull \hbox (badness 10000) in paragraph at lines 940--942 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c -mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[] -[]Dyn[]_[][] +mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Typ +e, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] [] - -Underfull \hbox (badness 10000) in paragraph at lines 783--785 +[192] +Underfull \hbox (badness 10000) in paragraph at lines 951--953 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 794--796 +Underfull \hbox (badness 10000) in paragraph at lines 951--953 +[]$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,Data[]_[][]Counter[]_[][]Ty +pe$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[ +]_[][]Type, Data[]_[][]Rule[]_[][] + [] + + +Underfull \hbox (badness 10000) in paragraph at lines 962--964 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 794--796 -[]$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,[]$\OML/cmm/m/it/8 >$$\OMS/ -cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], +Underfull \hbox (badness 10000) in paragraph at lines 962--964 +[]$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,Data[]_[][]Counter[]_[][]Ty +pe$\OML/cmm/m/it/8 >$$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 +Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -[191] -Underfull \hbox (badness 10000) in paragraph at lines 805--807 + +Underfull \hbox (badness 10000) in paragraph at lines 973--975 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 805--807 -\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::del -ete[]_[] +Underfull \hbox (badness 10000) in paragraph at lines 973--975 +\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[] [] -Underfull \hbox (badness 10000) in paragraph at lines 816--818 +Underfull \hbox (badness 10000) in paragraph at lines 984--986 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 816--818 -\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::del -ete[]_[] +Underfull \hbox (badness 10000) in paragraph at lines 984--986 +\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[] [] -Underfull \hbox (badness 10000) in paragraph at lines 827--829 +Underfull \hbox (badness 10000) in paragraph at lines 995--997 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 827--829 -\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::del -ete[]_[]rules +Underfull \hbox (badness 10000) in paragraph at lines 995--997 +\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[]rules [] - -Underfull \hbox (badness 10000) in paragraph at lines 838--840 +[193] +Underfull \hbox (badness 10000) in paragraph at lines 1006--1008 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 838--840 -\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::del -ete[]_[] +Underfull \hbox (badness 10000) in paragraph at lines 1006--1008 +\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[] [] -Underfull \hbox (badness 10000) in paragraph at lines 849--851 +Underfull \hbox (badness 10000) in paragraph at lines 1017--1019 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 849--851 +Underfull \hbox (badness 10000) in paragraph at lines 1017--1019 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 bool $\OML/cmm/m/i -t/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[][]Dyn[ -]_[][]Type +t/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Dat +a[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type [] -[192] -Underfull \hbox (badness 10000) in paragraph at lines 860--862 + +Underfull \hbox (badness 10000) in paragraph at lines 1028--1030 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 860--862 +Underfull \hbox (badness 10000) in paragraph at lines 1028--1030 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double, size[]_[]t $\OML/cmm/m/it/8 >$ []$< -$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][] +$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rul +e[]_[][]Type, Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 875--877 +Underfull \hbox (badness 10000) in paragraph at lines 1043--1045 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 875--877 +Underfull \hbox (badness 10000) in paragraph at lines 1043--1045 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m -/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[][]Dy -n[]_[][] +/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, D +ata[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] [] - -Underfull \hbox (badness 10000) in paragraph at lines 886--888 +[194] +Underfull \hbox (badness 10000) in paragraph at lines 1054--1056 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 886--888 +Underfull \hbox (badness 10000) in paragraph at lines 1054--1056 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n/8 A -rray[]_[][]Type, [], [], +rray[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 901--903 +Underfull \hbox (badness 10000) in paragraph at lines 1069--1071 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 916--918 +Underfull \hbox (badness 10000) in paragraph at lines 1069--1071 +\T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML +/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type $\OML/cmm/m/it/8 >$ $>$ []$<$ \T1 +/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[ +][] + [] + + +Underfull \hbox (badness 10000) in paragraph at lines 1084--1086 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 916--918 +Underfull \hbox (badness 10000) in paragraph at lines 1084--1086 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n/8 A -rray[]_[][]Type, [], [], +rray[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -[193] -Underfull \hbox (badness 10000) in paragraph at lines 931--933 + +Underfull \hbox (badness 10000) in paragraph at lines 1099--1101 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 931--933 +Underfull \hbox (badness 10000) in paragraph at lines 1099--1101 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n/8 A -rray[]_[][]Type, [], [], +rray[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 946--948 +Underfull \hbox (badness 10000) in paragraph at lines 1114--1116 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 946--948 +Underfull \hbox (badness 10000) in paragraph at lines 1114--1116 \T1/pcr/m/n/8 std[]::mt19937$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr -/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm -/m/it/8 >$[] +/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]T +ype, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[] [] - -Underfull \hbox (badness 10000) in paragraph at lines 957--959 +[195] +Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 968--970 +Underfull \hbox (badness 10000) in paragraph at lines 1136--1138 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 968--970 +Underfull \hbox (badness 10000) in paragraph at lines 1136--1138 []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,Data[]_[][]Rule[]_[][]Dyn[] _[][]Type$\OML/cmm/m/it/8 >$$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr -/m/n/8 Array[]_[][]Type, [], [], +/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]T +ype, [] -[194] -Underfull \hbox (badness 10000) in paragraph at lines 979--981 + +Underfull \hbox (badness 10000) in paragraph at lines 1147--1149 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 979--981 +Underfull \hbox (badness 10000) in paragraph at lines 1147--1149 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n/8 - Array[]_[][]Type, [], [], + Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 994--996 +Underfull \hbox (badness 10000) in paragraph at lines 1162--1164 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 994--996 +Underfull \hbox (badness 10000) in paragraph at lines 1162--1164 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c -mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[] -[]Dyn[]_[][] +mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Typ +e, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] [] - -Underfull \hbox (badness 10000) in paragraph at lines 1009--1011 +[196] +Underfull \hbox (badness 10000) in paragraph at lines 1177--1179 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1009--1011 +Underfull \hbox (badness 10000) in paragraph at lines 1177--1179 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n/8 - Array[]_[][]Type, [], [], + Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] -Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 +Underfull \hbox (badness 10000) in paragraph at lines 1192--1194 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 -[]$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,[],[],Data[]_[][]Rule[]_[][ -]Dyn[]_[][]Type$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, +Underfull \hbox (badness 10000) in paragraph at lines 1192--1194 +[]$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Type,Data[]_[][]Counter[]_[][]Ty +pe,Data[]_[][]Rule[]_[][]Type,Data[]_[][]Rule[]_[][]Dyn[]_[][]Type$\OML/cmm/m/i +t/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [] -[195] -Underfull \hbox (badness 10000) in paragraph at lines 1035--1037 + +Underfull \hbox (badness 10000) in paragraph at lines 1203--1205 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1035--1037 +Underfull \hbox (badness 10000) in paragraph at lines 1203--1205 \T1/pcr/m/n/8 std[]::function$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::vector$\OM L/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 double $\OM -S/cmsy/m/n/8 ^^C$\T1/pcr/m/n/8 , size[]_[]t [])$\OML/cmm/m/it/8 >$ []$<$ \T1/pc -r/m/n/8 Array[]_[][]Type, [], +S/cmsy/m/n/8 ^^C$\T1/pcr/m/n/8 , size[]_[]t k)$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr +/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, [] - -Underfull \hbox (badness 10000) detected at line 1050 +[197] +Underfull \hbox (badness 10000) detected at line 1218 [][][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1061--1063 +Underfull \hbox (badness 10000) in paragraph at lines 1229--1231 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1061--1063 +Underfull \hbox (badness 10000) in paragraph at lines 1229--1231 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::string $\OM -L/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[] -_[][] +L/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] +Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1072--1074 +Underfull \hbox (badness 10000) in paragraph at lines 1240--1242 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e = BArray$\OML/cmm/m/it/8 <$$>$\T1/pcr/m/n/8 , typename Data[]_[][]Counter[]_[ ][]Type = bool, typename Data[]_[][] [] -Underfull \hbox (badness 10000) in paragraph at lines 1072--1074 -\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::wit -h[]_[]pset = +Underfull \hbox (badness 10000) in paragraph at lines 1240--1242 +\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::with[]_[]pset = [] -[196]) (./class_net_counter_data.tex [197]) (./class_network_data.tex [198] -[199]) (./class_node.tex [200] <./class_node__coll__graph.pdf +) (./class_net_counter_data.tex [198] [199]) (./class_network_data.tex [200] +[201]) (./class_node.tex <./class_node__coll__graph.pdf pdfTeX warning: pdflatex (file ./class_node__coll__graph.pdf): PDF inclusion: m ultiple pdfs with page group included in a single page > - + File: class_node__coll__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_node__coll__graph.pdf used on input line 19. (pdftex.def) Requested size: 168.0pt x 100.00255pt. - [201] [202] [203] [204] [205]) (./class_node_data.tex [206] [207]) -(./class_phylo_counter_data.tex [208] [209] [210]) -(./class_phylo_rule_dyn_data.tex [211] [212]) (./class_power_set.tex + [202] [203] [204] [205] [206]) (./class_node_data.tex [207] [208]) +(./class_phylo_counter_data.tex [209] [210] [211]) +(./class_phylo_rule_dyn_data.tex [212] [213]) (./class_power_set.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. @@ -3133,25 +3163,25 @@ Package hyperref Warning: Token not allowed in a PDF string (Unicode): pdfTeX warning: pdflatex (file ./class_power_set__coll__graph.pdf): PDF inclusi on: multiple pdfs with page group included in a single page > - + File: class_power_set__coll__graph.pdf Graphic file (type pdf) Package pdftex.def Info: class_power_set__coll__graph.pdf used on input line 1 9. (pdftex.def) Requested size: 202.0pt x 178.00456pt. - [213] + [214] Overfull \vbox (5.8758pt too high) has occurred while \output is active [] -[214] [215] +[215] [216] Underfull \hbox (badness 10000) in paragraph at lines 229--231 \T1/pcr/m/n/8 const std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] Type $\OML/cmm/m/it/8 >$$\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n -/8 Array[]_[][]Type, [] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::get[]_[]data[]_[]p -tr ( ) +/8 Array[]_[][]Type, Data[]_[][]Rule[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/ +n/8 ::get[]_[]data[]_[]ptr ( ) [] -[216] [217] [218]) (./class_progress.tex [219] [220]) (./class_rule.tex +[217] [218] [219]) (./class_progress.tex [220] [221]) (./class_rule.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. @@ -3168,7 +3198,7 @@ Package hyperref Warning: Token not allowed in a PDF string (Unicode): Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. -[221] [222] [223]) (./class_rules.tex +[222] [223] [224]) (./class_rules.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. @@ -3185,7 +3215,7 @@ Package hyperref Warning: Token not allowed in a PDF string (Unicode): Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. -[224] [225] +[225] [226] Underfull \hbox (badness 10000) in paragraph at lines 134--136 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ []$<$\T1/pcr/m/n/8 Array[]_[][]T ype,Data[]_[][]Type$\OML/cmm/m/it/8 >$ $>$[]\T1/pcr/m/n/8 ::iterator []$\OML/cm @@ -3201,12 +3231,12 @@ m/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Type $\OML/cmm/m/it/8 >$ []\T1/pcr/m/n/8 ::end ( ) [] -[226] +[227] Underfull \hbox (badness 10000) detected at line 194 [][][] [] -[227] +[228] Underfull \hbox (badness 10000) detected at line 221 [][][] [] @@ -3228,17 +3258,17 @@ Package hyperref Warning: Token not allowed in a PDF string (Unicode): Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. -[228] +[229] Overfull \hbox (3.9776pt too wide) in paragraph at lines 1--1 []\T1/phv/m/sl/10 Array[] [] -[229] [230] +[230] [231] Overfull \hbox (3.9776pt too wide) in paragraph at lines 1--1 []\T1/phv/m/sl/10 Array[] [] -[231]) (./class_support.tex +[232]) (./class_support.tex Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. @@ -3263,7 +3293,7 @@ y[]_[][]Type $\OML/cmm/m/it/10 >$ $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 array[]_ cmm/m/it/10 >$ $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 stats[]_[] [] -[232] +[233] Overfull \hbox (3.9776pt too wide) in paragraph at lines 1--1 []\T1/phv/m/n/10 Array[] [] @@ -3278,17 +3308,18 @@ Overfull \hbox (3.9776pt too wide) in paragraph at lines 3--3 []\T1/phv/m/n/10 counters[] [] -[233] [234] +[234] [235] Underfull \hbox (badness 10000) in paragraph at lines 182--184 -[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[] -_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::[] ( ) +[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] +Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cm +m/m/it/8 >$[]\T1/pcr/m/n/8 ::[] ( ) [] Underfull \hbox (badness 10000) in paragraph at lines 193--195 -[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[] -_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::$\OMS/cmsy/m/n/8 ^^X$[ -] \T1/pcr/m/n/8 ( ) +[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] +Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cm +m/m/it/8 >$[]\T1/pcr/m/n/8 ::$\OMS/cmsy/m/n/8 ^^X$[] \T1/pcr/m/n/8 ( ) [] @@ -3300,9 +3331,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 207--209 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add -[]_[]counter +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add[]_[]counter [] @@ -3319,7 +3350,7 @@ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -[235] +[236] Underfull \hbox (badness 10000) in paragraph at lines 240--242 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ @@ -3328,9 +3359,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 240--242 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add -[]_[]rule[]_[] +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add[]_[]rule[]_[] [] @@ -3342,9 +3373,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 251--253 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add -[]_[]rule[]_[] +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::add[]_[]rule[]_[] [] @@ -3354,7 +3385,7 @@ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -[236] +[237] Underfull \hbox (badness 10000) in paragraph at lines 286--288 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ @@ -3363,9 +3394,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 286--288 -\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::eva -l[]_[] +\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::eval[]_[] [] @@ -3376,10 +3407,10 @@ e , typename [] -Overfull \hbox (24.83986pt too wide) in paragraph at lines 297--299 -[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [] $\OML/cmm/m/it/8 >$ $\ -OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [ -], +Underfull \hbox (badness 10000) in paragraph at lines 297--299 +[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][] +Type $\OML/cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/ +n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][] [] @@ -3392,8 +3423,8 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 312--314 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m -/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[][]Dy -n[] +/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, D +ata[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[] [] @@ -3407,7 +3438,8 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 323--325 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m /it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][] -Type, [], [], Data[]_[][]Rule[]_[][] +Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rul +e[]_[][] [] @@ -3420,11 +3452,11 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 338--340 \T1/pcr/m/n/8 const []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m/it/8 - >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [ -], Data[]_[][] + >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[ +]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][] [] -[237] +[238] Underfull \hbox (badness 10000) in paragraph at lines 349--351 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ @@ -3433,9 +3465,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 349--351 -[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [] $\OML/cmm/m/it/8 >$ $\ -OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [ -], +[]$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Rule[]_[][]Typ +e $\OML/cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 + Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, [] @@ -3446,10 +3478,10 @@ e , typename [] -Overfull \hbox (15.23985pt too wide) in paragraph at lines 364--366 +Underfull \hbox (badness 10000) in paragraph at lines 364--366 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn []_[][]Type $\OML/cmm/m/it/8 >$ $\OMS/cmsy/m/n/8 ^^C$ []$\OML/cmm/m/it/8 <$ \T1 -/pcr/m/n/8 Array[]_[][]Type, [], [], +/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[] [] @@ -3461,9 +3493,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 379--381 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::ini -t[]_[] +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::init[]_[] [] @@ -3475,12 +3507,12 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 390--392 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::pri -nt +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::print [] -[238] +[239] Underfull \hbox (badness 10000) in paragraph at lines 401--403 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ @@ -3489,9 +3521,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 401--403 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::res -et[]_[]array +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::reset[]_[]array [] @@ -3503,9 +3535,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 412--414 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::res -et[]_[]array +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::reset[]_[]array [] @@ -3517,9 +3549,9 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 423--425 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::set -[]_[] +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::set[]_[] [] @@ -3529,7 +3561,7 @@ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ e , typename [] -[239] +[240] Underfull \hbox (badness 10000) in paragraph at lines 445--447 \T1/pcr/m/n/8 template$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 typename Array[]_[][]Typ e , typename Data[]_[][]Counter[]_[][]Type , typename Data[]_[][]Rule[]_[][]Typ @@ -3538,100 +3570,100 @@ e , typename Underfull \hbox (badness 10000) in paragraph at lines 445--447 -\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::set -[]_[]rules[] +\T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::set[]_[]rules[] [] Underfull \hbox (badness 10000) in paragraph at lines 459--461 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m -/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[][]Dy -n[] +/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, D +ata[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[] [] Overfull \hbox (18.1601pt too wide) in paragraph at lines 470--472 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, -[], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 - ::coordiantes[] +Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] +[]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::coordiantes[] [] Overfull \hbox (18.1601pt too wide) in paragraph at lines 481--483 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, -[], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 - ::coordiantes[] +Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] +[]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::coordiantes[] [] -[240] +[241] Underfull \hbox (badness 10000) in paragraph at lines 492--494 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c -mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[] -[]Dyn[] +mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Typ +e, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[] [] Underfull \hbox (badness 10000) in paragraph at lines 503--505 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c -mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[] -[]Dyn[] +mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Typ +e, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[] [] Underfull \hbox (badness 10000) in paragraph at lines 514--516 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 double $\OML/cmm/m -/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[][]Dy -n[] +/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, D +ata[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[] [] Underfull \hbox (badness 10000) in paragraph at lines 525--527 -\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::del -ete[]_[] +\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[] [] -[241] +[242] Underfull \hbox (badness 10000) in paragraph at lines 536--538 -\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::del -ete[]_[] +\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[] [] Underfull \hbox (badness 10000) in paragraph at lines 547--549 -\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [] -, Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::del -ete[]_[] +\T1/pcr/m/n/8 bool []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[] +_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[ +]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::delete[]_[] [] Underfull \hbox (badness 10000) in paragraph at lines 558--560 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/c -mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[] -[]Dyn[] +mm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Typ +e, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[] [] Underfull \hbox (badness 10000) in paragraph at lines 569--571 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 bool $\OML/cmm/m/i -t/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, [], [], Data[]_[][]Rule[]_[][]Dyn[ -]_[][] +t/8 >$ []$<$ \T1/pcr/m/n/8 Array[]_[][]Type, Data[]_[][]Counter[]_[][]Type, Dat +a[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[][]Dyn[]_[][] [] -[242] +[243] Underfull \hbox (badness 10000) in paragraph at lines 591--593 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, -[], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 - ::max[]_[]num[] +Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] +[]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::max[]_[]num[] [] Underfull \hbox (badness 10000) in paragraph at lines 613--615 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 Array[]_[][]Type, -[], [], Data[]_[][]Rule[]_[][]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 - ::n[]_[] +Data[]_[][]Counter[]_[][]Type, Data[]_[][]Rule[]_[][]Type, Data[]_[][]Rule[]_[] +[]Dyn[]_[][]Type $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::n[]_[] [] ) (./structvec_hasher.tex @@ -3651,14 +3683,16 @@ Package hyperref Warning: Token not allowed in a PDF string (Unicode): Package hyperref Warning: Token not allowed in a PDF string (Unicode): (hyperref) removing `math shift' on input line 1. -[243]) [244] +[244]) [245] [246 + +] Chapter 9. (./barray-bones_8hpp.tex <./barray-bones_8hpp__dep__incl.pdf pdfTeX warning: pdflatex (file ./barray-bones_8hpp__dep__incl.pdf): PDF inclusi on: multiple pdfs with page group included in a single page > - + File: barray-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barray-bones_8hpp__dep__incl.pdf used on input line 8 @@ -3670,30 +3704,28 @@ Package pdftex.def Info: barray-bones_8hpp__dep__incl.pdf used on input line 8 pdfTeX warning: pdflatex (file ./barray-meat-operators_8hpp__dep__incl.pdf): PD F inclusion: multiple pdfs with page group included in a single page > - File: barray-meat-operators_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barray-meat-operators_8hpp__dep__incl.pdf used on inp ut line 8. (pdftex.def) Requested size: 193.0pt x 167.00172pt. - [245 - -] [246] [247] [248]) (./barray-meat_8hpp.tex <./barray-meat_8hpp__dep__incl.pdf - + [247] [248] [249] [250]) (./barray-meat_8hpp.tex <./barray-meat_8hpp__dep__inc +l.pdf pdfTeX warning: pdflatex (file ./barray-meat_8hpp__dep__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page > - + File: barray-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barray-meat_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 193.0pt x 167.00172pt. - [249] [250]) (./barraycell-bones_8hpp.tex <./barraycell-bones_8hpp__dep__incl. + [251] [252]) (./barraycell-bones_8hpp.tex <./barraycell-bones_8hpp__dep__incl. pdf> - + File: barraycell-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraycell-bones_8hpp__dep__incl.pdf used on input li @@ -3704,14 +3736,14 @@ ne 8. pdfTeX warning: pdflatex (file ./barraycell-meat_8hpp__dep__incl.pdf): PDF incl usion: multiple pdfs with page group included in a single page > - + File: barraycell-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraycell-meat_8hpp__dep__incl.pdf used on input lin e 8. (pdftex.def) Requested size: 196.0pt x 166.99916pt. -) (./barraydense-bones_8hpp.tex [251] <./barraydense-bones_8hpp__dep__incl.pdf> - +) (./barraydense-bones_8hpp.tex [253] <./barraydense-bones_8hpp__dep__incl.pdf> + File: barraydense-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydense-bones_8hpp__dep__incl.pdf used on input l @@ -3723,37 +3755,37 @@ p__incl.pdf pdfTeX warning: pdflatex (file ./barraydense-meat-operators_8hpp__dep__incl.pdf ): PDF inclusion: multiple pdfs with page group included in a single page > - File: barraydense-meat-operators_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydense-meat-operators_8hpp__dep__incl.pdf used o n input line 8. (pdftex.def) Requested size: 207.0pt x 167.00684pt. - [252] [253] [254]) (./barraydense-meat_8hpp.tex <./barraydense-meat_8hpp__dep_ + [254] [255] [256]) (./barraydense-meat_8hpp.tex <./barraydense-meat_8hpp__dep_ _incl.pdf pdfTeX warning: pdflatex (file ./barraydense-meat_8hpp__dep__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page > - + File: barraydense-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydense-meat_8hpp__dep__incl.pdf used on input li ne 8. (pdftex.def) Requested size: 207.0pt x 167.00684pt. - [255] [256]) (./barraydensecell-bones_8hpp.tex <./barraydensecell-bones_8hpp__ + [257] [258]) (./barraydensecell-bones_8hpp.tex <./barraydensecell-bones_8hpp__ dep__incl.pdf> - + File: barraydensecell-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydensecell-bones_8hpp__dep__incl.pdf used on inp ut line 8. (pdftex.def) Requested size: 222.0pt x 167.00172pt. - [257]) (./barraydensecell-meat_8hpp.tex <./barraydensecell-meat_8hpp__dep__inc + [259]) (./barraydensecell-meat_8hpp.tex <./barraydensecell-meat_8hpp__dep__inc l.pdf> - + File: barraydensecell-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydensecell-meat_8hpp__dep__incl.pdf used on inpu @@ -3764,35 +3796,35 @@ t line 8. pdfTeX warning: pdflatex (file ./barraydensecol-bones_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: barraydensecol-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydensecol-bones_8hpp__dep__incl.pdf used on inpu t line 8. (pdftex.def) Requested size: 220.0pt x 167.00684pt. - [258] [259]) (./barraydenserow-bones_8hpp.tex <./barraydenserow-bones_8hpp__de + [260] [261]) (./barraydenserow-bones_8hpp.tex <./barraydenserow-bones_8hpp__de p__incl.pdf> - + File: barraydenserow-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barraydenserow-bones_8hpp__dep__incl.pdf used on inpu t line 8. (pdftex.def) Requested size: 223.0pt x 167.00427pt. - [260]) (./barrayrow-bones_8hpp.tex) (./barrayrow-meat_8hpp.tex -[261] [262]) (./barrayvector-bones_8hpp.tex) (./barrayvector-meat_8hpp.tex) + [262]) (./barrayrow-bones_8hpp.tex) (./barrayrow-meat_8hpp.tex +[263] [264]) (./barrayvector-bones_8hpp.tex) (./barrayvector-meat_8hpp.tex) (./barry-configuration_8hpp.tex <./barry-configuration_8hpp__dep__incl.pdf pdfTeX warning: pdflatex (file ./barry-configuration_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: barry-configuration_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barry-configuration_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 209.0pt x 222.9989pt. - [263] [264] + [265] [266] Underfull \hbox (badness 10000) in paragraph at lines 63--64 \T1/pcr/m/n/8 #define BARRY[]_[][]MAX[]_[][]NUM[]_[][]ELEMENTS static[]_[]cast$ \OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 size[]_[]t $\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 (s @@ -3801,37 +3833,37 @@ m/it/8 >$[]\T1/pcr/m/n/8 ::max() [] ) (./barry-debug_8hpp.tex <./barry-debug_8hpp__dep__incl.pdf> - + File: barry-debug_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barry-debug_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 209.0pt x 222.9989pt. - [265]) + [267]) (./barry-macros_8hpp.tex <./barry-macros_8hpp__dep__incl.pdf pdfTeX warning: pdflatex (file ./barry-macros_8hpp__dep__incl.pdf): PDF inclusi on: multiple pdfs with page group included in a single page > - + File: barry-macros_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barry-macros_8hpp__dep__incl.pdf used on input line 8 . (pdftex.def) Requested size: 193.0pt x 167.00172pt. - [266] [267]) (./barry_8hpp.tex <./barry_8hpp__incl.pdf> - + [268] [269]) (./barry_8hpp.tex <./barry_8hpp__incl.pdf> + File: barry_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: barry_8hpp__incl.pdf used on input line 56. (pdftex.def) Requested size: 350.0pt x 15.16017pt. - [268] [269] [270]) + [270] [271] [272]) (./cell-bones_8hpp.tex <./cell-bones_8hpp__dep__incl.pdf pdfTeX warning: pdflatex (file ./cell-bones_8hpp__dep__incl.pdf): PDF inclusion : multiple pdfs with page group included in a single page > - + File: cell-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: cell-bones_8hpp__dep__incl.pdf used on input line 8. @@ -3841,14 +3873,14 @@ Package pdftex.def Info: cell-bones_8hpp__dep__incl.pdf used on input line 8. pdfTeX warning: pdflatex (file ./cell-meat_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: cell-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: cell-meat_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 193.0pt x 167.00172pt. -) (./col-bones_8hpp.tex [271]) (./counters-bones_8hpp.tex <./counters-bones_8hp +) (./col-bones_8hpp.tex [273]) (./counters-bones_8hpp.tex <./counters-bones_8hp p__dep__incl.pdf> - + File: counters-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: counters-bones_8hpp__dep__incl.pdf used on input line @@ -3859,49 +3891,56 @@ Package pdftex.def Info: counters-bones_8hpp__dep__incl.pdf used on input line pdfTeX warning: pdflatex (file ./counters-meat_8hpp__dep__incl.pdf): PDF inclus ion: multiple pdfs with page group included in a single page > - + File: counters-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: counters-meat_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 193.0pt x 167.00172pt. - [272] + [274] Overfull \hbox (28.03874pt too wide) in paragraph at lines 26--27 -[]\T1/phv/m/n/10 #define []([], b) tem-plate []() in-line [] []()[] +[]\T1/phv/m/n/10 #define [](a, b) tem-plate []() in-line a []()[] + [] + +[275] [276] [277] [278] [279] [280] [281] [282] [283] +Underfull \hbox (badness 10000) in paragraph at lines 550--551 +\T1/pcr/m/n/8 Data[]_[][]Type []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Ty +pe,Data[]_[][]Type$\OML/cmm/m/it/8 >$ []$<$\T1/pcr/m/n/8 Array[]_[][]Type,Data[ +]_[][]Type$\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 Data[] [] -[273] [274] [275] [276] [277] [278] [279] [280] [281] -Underfull \hbox (badness 10000) in paragraph at lines 570--571 + +Underfull \hbox (badness 10000) in paragraph at lines 560--561 \T1/pcr/m/n/8 Data[]_[][]Type []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Ty pe,Data[]_[][]Type$\OML/cmm/m/it/8 >$ []$<$\T1/pcr/m/n/8 Array[]_[][]Type,Data[ ]_[][]Type$\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 Data[] [] -[282] [283] -Underfull \hbox (badness 10000) in paragraph at lines 675--676 +[284] [285] +Underfull \hbox (badness 10000) in paragraph at lines 665--666 \T1/pcr/m/n/8 Data[]_[][]Type []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 Array[]_[][]Ty pe,Data[]_[][]Type$\OML/cmm/m/it/8 >$ []$<$\T1/pcr/m/n/8 Array[]_[][]Type,Data[ ]_[][]Type$\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 Data[] [] -[284]) (./network-css_8hpp.tex <./network-css_8hpp__dep__incl.pdf +[286]) (./network-css_8hpp.tex <./network-css_8hpp__dep__incl.pdf pdfTeX warning: pdflatex (file ./network-css_8hpp__dep__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page > - + File: network-css_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: network-css_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 193.0pt x 234.00244pt. - [285] [286] [287] [288] [289] [290] [291] [292]) (./network_8hpp.tex <./networ + [287] [288] [289] [290] [291] [292] [293] [294]) (./network_8hpp.tex <./networ k_8hpp__incl.pdf pdfTeX warning: pdflatex (file ./network_8hpp__incl.pdf): PDF inclusion: multip le pdfs with page group included in a single page > - + File: network_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: network_8hpp__incl.pdf used on input line 9. @@ -3911,18 +3950,18 @@ Package pdftex.def Info: network_8hpp__incl.pdf used on input line 9. pdfTeX warning: pdflatex (file ./network_8hpp__dep__incl.pdf): PDF inclusion: m ultiple pdfs with page group included in a single page > - + File: network_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: network_8hpp__dep__incl.pdf used on input line 17. (pdftex.def) Requested size: 193.0pt x 167.00172pt. - [293] [294] [295] [296] [297] [298] [299]) (./freqtable_8hpp.tex <./freqtable_ + [295] [296] [297] [298] [299] [300] [301]) (./freqtable_8hpp.tex <./freqtable_ 8hpp__dep__incl.pdf pdfTeX warning: pdflatex (file ./freqtable_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: freqtable_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: freqtable_8hpp__dep__incl.pdf used on input line 8. @@ -3932,55 +3971,43 @@ Package pdftex.def Info: freqtable_8hpp__dep__incl.pdf used on input line 8. pdfTeX warning: pdflatex (file ./model-bones_8hpp__dep__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page > - + File: model-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: model-bones_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 193.0pt x 167.00172pt. - [300]) (./model-meat_8hpp.tex <./model-meat_8hpp__dep__incl.pdf> - + [302]) (./model-meat_8hpp.tex <./model-meat_8hpp__dep__incl.pdf> + File: model-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: model-meat_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 193.0pt x 167.00172pt. - [301] -Underfull \hbox (badness 896) in paragraph at lines 25--27 + +Underfull \hbox (badness 905) in paragraph at lines 16--17 []\T1/phv/m/n/10 double [] (const dou-ble $\OMS/cmsy/m/n/10 ^^C$\T1/phv/m/n/10 stats[]_[]target, const std[]::vector$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 dou-bl -e $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &[], const dou-ble +e $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 ¶ms, const dou-ble [] -[302] [303] [304] [305] [306] [307] [308] [309] [310] [311] -Underfull \hbox (badness 10000) in paragraph at lines 626--627 -| \T1/pcr/m/n/8 1.[]0+ \T1/pcr/m/sl/8 std[]::exp-vec[]_[]inner[]_[]prod$\OML/c -mm/m/it/8 <$ \T1/pcr/m/sl/8 double $\OML/cmm/m/it/8 >$\T1/pcr/m/sl/8 (¶ms[] -0u[], &tmp[]_[]counts[]0u[], params.[] - [] - -[312] [313] [314] [315] [316] [317] [318]) (./defm_8hpp.tex <./defm_8hpp__incl. -pdf - -pdfTeX warning: pdflatex (file ./defm_8hpp__incl.pdf): PDF inclusion: multiple -pdfs with page group included in a single page -> - +[303]) (./defm_8hpp.tex <./defm_8hpp__incl.pdf> + File: defm_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm_8hpp__incl.pdf used on input line 14. (pdftex.def) Requested size: 350.0pt x 114.94736pt. - [319]) (./defm_2counters_8hpp.tex <./defm_2counters_8hpp__incl.pdf +) (./defm_2counters_8hpp.tex <./defm_2counters_8hpp__incl.pdf pdfTeX warning: pdflatex (file ./defm_2counters_8hpp__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: defm_2counters_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm_2counters_8hpp__incl.pdf used on input line 9. (pdftex.def) Requested size: 186.0pt x 167.00684pt. - [320] <./defm_2counters_8hpp__dep__incl.pdf> - + [304] <./defm_2counters_8hpp__dep__incl.pdf> + File: defm_2counters_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm_2counters_8hpp__dep__incl.pdf used on input line @@ -3988,17 +4015,17 @@ Package pdftex.def Info: defm_2counters_8hpp__dep__incl.pdf used on input line (pdftex.def) Requested size: 186.0pt x 178.0073pt. Underfull \hbox (badness 3148) in paragraph at lines 32--34 -[]\T1/phv/m/n/10 #define []([]) in-line dou-ble ([]) (const [] & Ar-ray, size[] -_[]t [], size[]_[]t [], +[]\T1/phv/m/n/10 #define [](a) in-line dou-ble (a) (const [] & Ar-ray, size[]_[ +]t [], size[]_[]t [], [] -[321] [322] [323]) (./geese_2counters_8hpp.tex <./geese_2counters_8hpp__dep__in +[305] [306] [307]) (./geese_2counters_8hpp.tex <./geese_2counters_8hpp__dep__in cl.pdf pdfTeX warning: pdflatex (file ./geese_2counters_8hpp__dep__incl.pdf): PDF incl usion: multiple pdfs with page group included in a single page > - + File: geese_2counters_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese_2counters_8hpp__dep__incl.pdf used on input lin @@ -4010,14 +4037,14 @@ Underfull \hbox (badness 5147) in paragraph at lines 14--15 []_[]t pos, size[]_[]t lb, size[]_[]t ub, size[]_[] [] - +[308] Overfull \hbox (23.90007pt too wide) in paragraph at lines 40--41 []\T1/phv/m/n/10 void [] ([] $\OMS/cmsy/m/n/10 ^^C$[]\T1/phv/m/n/10 , std[]::ve ctor$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv /m/n/10 nfun, size[]_[]t duplication=[]) [] -[324] + Underfull \hbox (badness 2726) in paragraph at lines 46--47 []\T1/phv/m/n/10 void [] ([] $\OMS/cmsy/m/n/10 ^^C$[]\T1/phv/m/n/10 , size[]_[] t nfunA, size[]_[]t nfunB, size[]_[] @@ -4072,7 +4099,7 @@ Overfull \hbox (74.95236pt too wide) in paragraph at lines 74--75 , size[]_[]t duplication=[]) [] - +[309] Overfull \hbox (56.91142pt too wide) in paragraph at lines 76--77 []\T1/phv/m/n/10 void [] ([] $\OMS/cmsy/m/n/10 ^^C$[]\T1/phv/m/n/10 , std[]::ve ctor$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv @@ -4091,30 +4118,33 @@ Underfull \hbox (badness 7576) in paragraph at lines 84--85 t nfunA, size[]_[]t nfunB, size[]_[] [] -) (./defm-bones_8hpp.tex <./defm-bones_8hpp__dep__incl.pdf> - +) (./defm-bones_8hpp.tex <./defm-bones_8hpp__dep__incl.pdf + +pdfTeX warning: pdflatex (file ./defm-bones_8hpp__dep__incl.pdf): PDF inclusion +: multiple pdfs with page group included in a single page +> + File: defm-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm-bones_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 193.0pt x 178.00185pt. - [325]) -(./defm-meat_8hpp.tex <./defm-meat_8hpp__dep__incl.pdf +) (./defm-meat_8hpp.tex <./defm-meat_8hpp__dep__incl.pdf pdfTeX warning: pdflatex (file ./defm-meat_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: defm-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm-meat_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 189.0pt x 178.00456pt. - [326]) (./defm-types_8hpp.tex <./defm-types_8hpp__dep__incl.pdf> - + [310] [311]) (./defm-types_8hpp.tex <./defm-types_8hpp__dep__incl.pdf> + File: defm-types_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: defm-types_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 190.0pt x 178.0073pt. - [327] + Underfull \hbox (badness 2277) in paragraph at lines 34--36 []\T1/phv/m/n/10 typedef barry[]::[]Support$\OML/cmm/m/it/10 <$ []\T1/phv/m/n/1 0 , [], [], [] $\OML/cmm/m/it/10 >$ @@ -4126,29 +4156,25 @@ Underfull \hbox (badness 4531) in paragraph at lines 38--40 , [], [], [] $\OML/cmm/m/it/10 >$ [] -) (./formula_8hpp.tex <./formula_8hpp__dep__incl.pdf - -pdfTeX warning: pdflatex (file ./formula_8hpp__dep__incl.pdf): PDF inclusion: m -ultiple pdfs with page group included in a single page -> - +[312]) (./formula_8hpp.tex <./formula_8hpp__dep__incl.pdf> + File: formula_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: formula_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 186.0pt x 245.01004pt. - [328] [329]) (./geese_8hpp.tex <./geese_8hpp__incl.pdf> - + [313]) +(./geese_8hpp.tex <./geese_8hpp__incl.pdf> + File: geese_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese_8hpp__incl.pdf used on input line 22. (pdftex.def) Requested size: 350.0pt x 39.67776pt. - [330]) -(./flock-bones_8hpp.tex <./flock-bones_8hpp__dep__incl.pdf + [314]) (./flock-bones_8hpp.tex <./flock-bones_8hpp__dep__incl.pdf pdfTeX warning: pdflatex (file ./flock-bones_8hpp__dep__incl.pdf): PDF inclusio n: multiple pdfs with page group included in a single page > - + File: flock-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: flock-bones_8hpp__dep__incl.pdf used on input line 8. @@ -4159,26 +4185,26 @@ Package pdftex.def Info: flock-bones_8hpp__dep__incl.pdf used on input line 8. pdfTeX warning: pdflatex (file ./flock-meat_8hpp__dep__incl.pdf): PDF inclusion : multiple pdfs with page group included in a single page > - + File: flock-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: flock-meat_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 192.0pt x 177.99911pt. -) (./geese-bones_8hpp.tex [331] <./geese-bones_8hpp__dep__incl.pdf> - +) (./geese-bones_8hpp.tex [315] <./geese-bones_8hpp__dep__incl.pdf> + File: geese-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-bones_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 276.0pt x 245.00253pt. - [332] -[333]) (./geese-meat-constructors_8hpp.tex <./geese-meat-constructors_8hpp__dep + [316] +[317]) (./geese-meat-constructors_8hpp.tex <./geese-meat-constructors_8hpp__dep __incl.pdf pdfTeX warning: pdflatex (file ./geese-meat-constructors_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - File: geese-meat-constructors_8hpp__dep__incl.pdf Graphic file (type pdf) @@ -4190,14 +4216,14 @@ nput line 8. pdfTeX warning: pdflatex (file ./geese-meat-likelihood_8hpp__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page > - + File: geese-meat-likelihood_8hpp__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-meat-likelihood_8hpp__incl.pdf used on input li ne 9. (pdftex.def) Requested size: 241.0pt x 167.00684pt. - [334] <./geese-meat-likelihood_8hpp__dep__incl.pdf> - + [318] <./geese-meat-likelihood_8hpp__dep__incl.pdf> + File: geese-meat-likelihood_8hpp__dep__incl.pdf Graphic file (type pdf) @@ -4211,7 +4237,7 @@ pp__dep__incl.pdf pdfTeX warning: pdflatex (file ./geese-meat-likelihood__exhaust_8hpp__dep__incl .pdf): PDF inclusion: multiple pdfs with page group included in a single page > - File: geese-meat-likelihood__exhaust_8hpp__dep__incl.pdf Graphic file (type pdf ) @@ -4219,9 +4245,9 @@ File: geese-meat-likelihood__exhaust_8hpp__dep__incl.pdf Graphic file (type pdf Package pdftex.def Info: geese-meat-likelihood__exhaust_8hpp__dep__incl.pdf us ed on input line 8. (pdftex.def) Requested size: 223.0pt x 189.00485pt. -) (./geese-meat-predict_8hpp.tex [335] <./geese-meat-predict_8hpp__dep__incl.pd +) (./geese-meat-predict_8hpp.tex [319] <./geese-meat-predict_8hpp__dep__incl.pd f> - + File: geese-meat-predict_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-meat-predict_8hpp__dep__incl.pdf used on input @@ -4233,16 +4259,16 @@ dep__incl.pdf pdfTeX warning: pdflatex (file ./geese-meat-predict__exhaust_8hpp__dep__incl.pd f): PDF inclusion: multiple pdfs with page group included in a single page > - File: geese-meat-predict__exhaust_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-meat-predict__exhaust_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 212.0pt x 189.01065pt. -) (./geese-meat-predict__sim_8hpp.tex [336] <./geese-meat-predict__sim_8hpp__de +) (./geese-meat-predict__sim_8hpp.tex [320] <./geese-meat-predict__sim_8hpp__de p__incl.pdf> - File: geese-meat-predict__sim_8hpp__dep__incl.pdf Graphic file (type pdf) @@ -4254,14 +4280,14 @@ nput line 8. pdfTeX warning: pdflatex (file ./geese-meat-simulate_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: geese-meat-simulate_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-meat-simulate_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 238.0pt x 177.99911pt. -) (./geese-meat_8hpp.tex [337] <./geese-meat_8hpp__dep__incl.pdf> - +) (./geese-meat_8hpp.tex [321] <./geese-meat_8hpp__dep__incl.pdf> + File: geese-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-meat_8hpp__dep__incl.pdf used on input line 8. @@ -4272,26 +4298,26 @@ Package pdftex.def Info: geese-meat_8hpp__dep__incl.pdf used on input line 8. pdfTeX warning: pdflatex (file ./geese-node-bones_8hpp__dep__incl.pdf): PDF inc lusion: multiple pdfs with page group included in a single page > - + File: geese-node-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-node-bones_8hpp__dep__incl.pdf used on input li ne 8. (pdftex.def) Requested size: 226.0pt x 178.00185pt. - [338]) (./geese-types_8hpp.tex <./geese-types_8hpp__dep__incl.pdf> - + [322]) (./geese-types_8hpp.tex <./geese-types_8hpp__dep__incl.pdf> + File: geese-types_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: geese-types_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 199.0pt x 178.01003pt. - [339] + [323] Underfull \hbox (badness 7030) in paragraph at lines 45--47 []\T1/phv/m/n/10 typedef barry[]::[]Support$\OML/cmm/m/it/10 <$ []\T1/phv/m/n/1 0 , [], [], [] $\OML/cmm/m/it/10 >$ [] -[340] [341] +[324] [325] Overfull \hbox (23.5786pt too wide) in paragraph at lines 184--185 \T1/pcr/m/n/8 typedef barry[]::[]Support$\OML/cmm/m/it/8 <$[]\T1/pcr/m/n/8 , [] , [], [] $\OML/cmm/m/it/8 >$ [] @@ -4302,14 +4328,14 @@ Overfull \hbox (23.5786pt too wide) in paragraph at lines 184--185 pdfTeX warning: pdflatex (file ./powerset-bones_8hpp__dep__incl.pdf): PDF inclu sion: multiple pdfs with page group included in a single page > - + File: powerset-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: powerset-bones_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 194.0pt x 167.00684pt. - [342]) (./powerset-meat_8hpp.tex <./powerset-meat_8hpp__dep__incl.pdf> - + [326]) (./powerset-meat_8hpp.tex <./powerset-meat_8hpp__dep__incl.pdf> + File: powerset-meat_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: powerset-meat_8hpp__dep__incl.pdf used on input line @@ -4321,21 +4347,21 @@ Package pdftex.def Info: powerset-meat_8hpp__dep__incl.pdf used on input line pdfTeX warning: pdflatex (file ./progress_8hpp__dep__incl.pdf): PDF inclusion: multiple pdfs with page group included in a single page > - + File: progress_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: progress_8hpp__dep__incl.pdf used on input line 8. (pdftex.def) Requested size: 210.0pt x 212.00543pt. - [343]) (./rules-bones_8hpp.tex <./rules-bones_8hpp__dep__incl.pdf> - + [327]) (./rules-bones_8hpp.tex <./rules-bones_8hpp__dep__incl.pdf> + File: rules-bones_8hpp__dep__incl.pdf Graphic file (type pdf) Package pdftex.def Info: rules-bones_8hpp__dep__incl.pdf used on input line 8. 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(pdftex.def) Requested size: 209.0pt x 155.99922pt. - [353] [354] + [337] [338] Underfull \hbox (badness 10000) in paragraph at lines 117--119 \T1/pcr/m/n/8 using [] = std[]::function$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double (const Array[]_[][]Type &, size[]_[]t, size[]_[]t, Data[]_[][]Type @@ -4411,7 +4437,7 @@ Underfull \hbox (badness 10000) detected at line 133 [][][] [] -[355] [356] +[339] [340] Underfull \hbox (badness 10000) detected at line 234 [][][] [] @@ -4421,7 +4447,7 @@ Underfull \hbox (badness 10000) detected at line 257 [][][] [] -[357]) (./_r_e_a_d_m_e_8md.tex) [358] (./refman.ind +[341]) (./_r_e_a_d_m_e_8md.tex) [342] (./refman.ind Underfull \hbox (badness 2088) in paragraph at lines 25--27 []| \T1/phv/m/n/10 BArrayVector_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell_T ype, Data_Type $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , @@ -4458,1433 +4484,1433 @@ Underfull \hbox (badness 3568) in paragraph at lines 74--76 [] -Underfull \hbox (badness 10000) in paragraph at lines 87--89 +Underfull \hbox (badness 10000) in paragraph at lines 85--87 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 87--89 +Underfull \hbox (badness 3568) in paragraph at lines 85--87 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 92--94 +Underfull \hbox (badness 10000) in paragraph at lines 90--92 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 92--94 +Underfull \hbox (badness 3568) in paragraph at lines 90--92 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 96--98 +Underfull \hbox (badness 10000) in paragraph at lines 94--96 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 96--98 +Underfull \hbox (badness 3568) in paragraph at lines 94--96 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 105--107 +Underfull \hbox (badness 10000) in paragraph at lines 103--105 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 105--107 +Underfull \hbox (badness 3568) in paragraph at lines 103--105 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -[359 - - -] -Underfull \hbox (badness 10000) in paragraph at lines 108--110 +Underfull \hbox (badness 10000) in paragraph at lines 106--108 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 108--110 +Underfull 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ConstBArrayRowIter$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell_T ype, Data_Type $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 663--665 +Underfull \hbox (badness 10000) in paragraph at lines 664--666 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 663--665 +Underfull \hbox (badness 3568) in paragraph at lines 664--666 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 666--668 +Underfull \hbox (badness 10000) in paragraph at lines 667--669 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 666--668 +Underfull \hbox (badness 3568) in paragraph at lines 667--669 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , 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ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 1738--1740 +Underfull \hbox (badness 3568) in paragraph at lines 1710--1712 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 1752--1754 +Underfull \hbox (badness 10000) in paragraph at lines 1722--1724 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 1752--1754 +Underfull \hbox (badness 3568) in paragraph at lines 1722--1724 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 1767--1769 +Underfull \hbox (badness 10000) in paragraph at lines 1737--1739 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 1767--1769 +Underfull \hbox 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Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 1909--1911 +Underfull \hbox (badness 10000) in paragraph at lines 1827--1829 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 1909--1911 +Underfull \hbox (badness 3568) in paragraph at lines 1827--1829 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -[375] -Underfull \hbox (badness 10000) in paragraph at lines 2104--2106 +[358] +Underfull \hbox (badness 10000) in paragraph at lines 2022--2024 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2104--2106 +Underfull \hbox (badness 3568) in paragraph at lines 2022--2024 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] - -Underfull \hbox (badness 10000) in paragraph at lines 2112--2114 +[359] +Underfull \hbox (badness 10000) in paragraph at lines 2030--2032 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2112--2114 +Underfull \hbox (badness 3568) in paragraph at lines 2030--2032 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2115--2117 +Underfull \hbox (badness 10000) in paragraph at lines 2033--2035 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2115--2117 +Underfull \hbox (badness 3568) in paragraph at lines 2033--2035 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2120--2122 +Underfull \hbox (badness 10000) in paragraph at lines 2038--2040 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2120--2122 +Underfull \hbox (badness 3568) in paragraph at lines 2038--2040 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -[376] -Underfull \hbox (badness 2088) in paragraph at lines 2156--2158 + +Underfull \hbox (badness 2088) in paragraph at lines 2074--2076 []| \T1/phv/m/n/10 BArrayVector_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell_T ype, Data_Type $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [] -Underfull \hbox (badness 2088) in paragraph at lines 2163--2165 +Underfull \hbox (badness 2088) in paragraph at lines 2081--2083 []| \T1/phv/m/n/10 BArrayVector_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell_T ype, Data_Type $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [] -Underfull \hbox (badness 2088) in paragraph at lines 2171--2173 +Underfull \hbox (badness 2088) in paragraph at lines 2089--2091 []| \T1/phv/m/n/10 BArrayVector_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell_T ype, Data_Type $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [] -Underfull \hbox (badness 2088) in paragraph at lines 2178--2180 +Underfull \hbox (badness 2088) in paragraph at lines 2096--2098 []| \T1/phv/m/n/10 BArrayVector_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell_T ype, Data_Type $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [] -Underfull \hbox (badness 2088) in paragraph at lines 2185--2187 +Underfull \hbox (badness 2088) in paragraph at lines 2103--2105 []| \T1/phv/m/n/10 BArrayVector_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell_T ype, Data_Type $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [] -Underfull \hbox (badness 2088) in paragraph at lines 2192--2194 +Underfull \hbox (badness 2088) in paragraph at lines 2110--2112 []| \T1/phv/m/n/10 BArrayVector_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell_T ype, Data_Type $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [] -Underfull \hbox (badness 1142) in paragraph at lines 2215--2217 +Underfull \hbox (badness 1142) in paragraph at lines 2133--2135 []| \T1/phv/m/n/10 BArrayDenseRow_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell _Type, Data_Type [] - -Underfull \hbox (badness 10000) in paragraph at lines 2269--2271 +[360] +Underfull \hbox (badness 10000) in paragraph at lines 2187--2189 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2269--2271 +Underfull \hbox (badness 3568) in paragraph at lines 2187--2189 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 2088) in paragraph at lines 2286--2288 +Underfull \hbox (badness 2088) in paragraph at lines 2204--2206 []| \T1/phv/m/n/10 BArrayVector_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell_T ype, Data_Type $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [] -[377] -Underfull \hbox (badness 10000) in paragraph at lines 2306--2308 + +Underfull \hbox (badness 10000) in paragraph at lines 2222--2224 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2306--2308 +Underfull \hbox (badness 3568) in paragraph at lines 2222--2224 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -[378] -Underfull \hbox (badness 10000) in paragraph at lines 2490--2492 +[361] +Underfull \hbox (badness 10000) in paragraph at lines 2406--2408 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2490--2492 +Underfull \hbox (badness 3568) in paragraph at lines 2406--2408 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2493--2495 +Underfull \hbox (badness 10000) in paragraph at lines 2409--2411 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2493--2495 +Underfull \hbox (badness 3568) in paragraph at lines 2409--2411 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] - -Underfull \hbox (badness 10000) in paragraph at lines 2502--2504 +[362] +Underfull \hbox (badness 10000) in paragraph at lines 2418--2420 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2502--2504 +Underfull \hbox (badness 3568) in paragraph at lines 2418--2420 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2518--2520 +Underfull \hbox (badness 10000) in paragraph at lines 2432--2434 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2518--2520 +Underfull \hbox (badness 3568) in paragraph at lines 2432--2434 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2524--2526 +Underfull \hbox (badness 10000) in paragraph at lines 2437--2439 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2524--2526 +Underfull \hbox (badness 3568) in paragraph at lines 2437--2439 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2527--2529 +Underfull \hbox (badness 10000) in paragraph at lines 2440--2442 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2527--2529 +Underfull \hbox (badness 3568) in paragraph at lines 2440--2442 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -[379] -Underfull \hbox (badness 10000) in paragraph at lines 2542--2544 + +Underfull \hbox (badness 10000) in paragraph at lines 2452--2454 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2542--2544 +Underfull \hbox (badness 3568) in paragraph at lines 2452--2454 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2559--2561 +Underfull \hbox (badness 10000) in paragraph at lines 2468--2470 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2559--2561 +Underfull \hbox (badness 3568) in paragraph at lines 2468--2470 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2616--2618 +Underfull \hbox (badness 10000) in paragraph at lines 2522--2524 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2616--2618 +Underfull \hbox (badness 3568) in paragraph at lines 2522--2524 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] - -Underfull \hbox (badness 10000) in paragraph at lines 2643--2645 +[363] +Underfull \hbox (badness 10000) in paragraph at lines 2546--2548 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2643--2645 +Underfull \hbox (badness 3568) in paragraph at lines 2546--2548 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2654--2656 +Underfull \hbox (badness 10000) in paragraph at lines 2556--2558 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2654--2656 +Underfull \hbox (badness 3568) in paragraph at lines 2556--2558 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -[380] -Underfull \hbox (badness 10000) in paragraph at lines 2659--2661 + +Underfull \hbox (badness 10000) in paragraph at lines 2561--2563 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2659--2661 +Underfull \hbox (badness 3568) in paragraph at lines 2561--2563 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2664--2666 +Underfull \hbox (badness 10000) in paragraph at lines 2565--2567 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2664--2666 +Underfull \hbox (badness 3568) in paragraph at lines 2565--2567 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2675--2677 +Underfull \hbox (badness 10000) in paragraph at lines 2576--2578 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2675--2677 +Underfull \hbox (badness 3568) in paragraph at lines 2576--2578 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2678--2680 +Underfull \hbox (badness 10000) in paragraph at lines 2579--2581 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2678--2680 +Underfull \hbox (badness 3568) in paragraph at lines 2579--2581 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2681--2683 +Underfull \hbox (badness 10000) in paragraph at lines 2581--2583 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2681--2683 +Underfull \hbox (badness 3568) in paragraph at lines 2581--2583 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2684--2686 +Underfull \hbox (badness 10000) in paragraph at lines 2584--2586 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2684--2686 +Underfull \hbox (badness 3568) in paragraph at lines 2584--2586 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2687--2689 +Underfull \hbox (badness 10000) in paragraph at lines 2586--2588 []| \T1/phv/m/n/10 Support$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data _Counter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2687--2689 +Underfull \hbox (badness 3568) in paragraph at lines 2586--2588 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2692--2694 +Underfull \hbox (badness 10000) in paragraph at lines 2591--2593 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2692--2694 +Underfull \hbox (badness 3568) in paragraph at lines 2591--2593 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2695--2697 +Underfull \hbox (badness 10000) in paragraph at lines 2594--2596 []| \T1/phv/m/n/10 Model$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Ar-ray_Type, Data_C ounter_Type, [] -Underfull \hbox (badness 3568) in paragraph at lines 2695--2697 +Underfull \hbox (badness 3568) in paragraph at lines 2594--2596 \T1/phv/m/n/10 Data_Rule_Type, Data_Rule_Dyn_Type $\OML/cmm/m/it/10 >$\T1/phv/m /n/10 , [] -Underfull \hbox (badness 1142) in paragraph at lines 2709--2711 +Underfull \hbox (badness 1142) in paragraph at lines 2608--2610 []| \T1/phv/m/n/10 BArrayDenseRow_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell _Type, Data_Type [] -Underfull \hbox (badness 2088) in paragraph at lines 2713--2715 +Underfull \hbox (badness 2088) in paragraph at lines 2612--2614 []| \T1/phv/m/n/10 BArrayVector_const$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 Cell_T ype, Data_Type $\OML/cmm/m/it/10 >$\T1/phv/m/n/10 , [] -Underfull \hbox (badness 10000) in paragraph at lines 2717--2719 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100644 --- a/latex/refman.toc +++ b/latex/refman.toc @@ -742,721 +742,635 @@ \contentsline {subsubsection}{\numberline {8.29.3.11}gen\_key()}{183}{subsubsection.8.29.3.11}% \contentsline {subsubsection}{\numberline {8.29.3.12}get\_arrays2support()}{183}{subsubsection.8.29.3.12}% \contentsline {subsubsection}{\numberline {8.29.3.13}get\_counters()}{183}{subsubsection.8.29.3.13}% -\contentsline {subsubsection}{\numberline {8.29.3.14}get\_norm\_const()}{183}{subsubsection.8.29.3.14}% +\contentsline {subsubsection}{\numberline {8.29.3.14}get\_norm\_const()}{184}{subsubsection.8.29.3.14}% \contentsline {subsubsection}{\numberline {8.29.3.15}get\_pset()}{184}{subsubsection.8.29.3.15}% \contentsline {subsubsection}{\numberline {8.29.3.16}get\_pset\_arrays()}{184}{subsubsection.8.29.3.16}% \contentsline {subsubsection}{\numberline {8.29.3.17}get\_pset\_probs()}{184}{subsubsection.8.29.3.17}% -\contentsline {subsubsection}{\numberline {8.29.3.18}get\_pset\_stats()\hspace {0.1cm}{\footnotesize 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{8.35.3.1}operator()()}{212}{subsubsection.8.35.3.1}% -\contentsline {subsection}{\numberline {8.35.4}Member Data Documentation}{212}{subsection.8.35.4}% -\contentsline {subsubsection}{\numberline {8.35.4.1}counts}{212}{subsubsection.8.35.4.1}% -\contentsline {subsubsection}{\numberline {8.35.4.2}duplication}{213}{subsubsection.8.35.4.2}% -\contentsline {subsubsection}{\numberline {8.35.4.3}lb}{213}{subsubsection.8.35.4.3}% -\contentsline {subsubsection}{\numberline {8.35.4.4}pos}{213}{subsubsection.8.35.4.4}% -\contentsline {subsubsection}{\numberline {8.35.4.5}ub}{213}{subsubsection.8.35.4.5}% -\contentsline {section}{\numberline {8.36}Power\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}Set$<$ Array\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}\_\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}Type, Data\discretionary 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{subsubsection}{\numberline {9.42.2.3}vec\_diff()}{318}{subsubsection.9.42.2.3}% +\contentsline {subsubsection}{\numberline {9.42.2.4}vector\_caster()}{318}{subsubsection.9.42.2.4}% +\contentsline {section}{\numberline {9.43}include/barry/models/geese/geese-\/meat-\/constructors.hpp File Reference}{318}{section.9.43}% +\contentsline {section}{\numberline {9.44}include/barry/models/geese/geese-\/meat-\/likelihood.hpp File Reference}{319}{section.9.44}% +\contentsline {section}{\numberline {9.45}include/barry/models/geese/geese-\/meat-\/likelihood\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}\_\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}exhaust.hpp File Reference}{320}{section.9.45}% +\contentsline {section}{\numberline {9.46}include/barry/models/geese/geese-\/meat-\/predict.hpp File Reference}{320}{section.9.46}% +\contentsline {section}{\numberline {9.47}include/barry/models/geese/geese-\/meat-\/predict\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}\_\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}exhaust.hpp File Reference}{321}{section.9.47}% +\contentsline {section}{\numberline {9.48}include/barry/models/geese/geese-\/meat-\/predict\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}\_\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}sim.hpp File Reference}{321}{section.9.48}% +\contentsline {section}{\numberline {9.49}include/barry/models/geese/geese-\/meat-\/simulate.hpp File Reference}{322}{section.9.49}% +\contentsline {section}{\numberline {9.50}include/barry/models/geese/geese-\/meat.hpp File Reference}{322}{section.9.50}% +\contentsline {section}{\numberline {9.51}include/barry/models/geese/geese-\/node-\/bones.hpp File Reference}{323}{section.9.51}% +\contentsline {section}{\numberline {9.52}include/barry/models/geese/geese-\/types.hpp File Reference}{323}{section.9.52}% +\contentsline {subsection}{\numberline {9.52.1}Macro Definition Documentation}{324}{subsection.9.52.1}% +\contentsline {subsubsection}{\numberline {9.52.1.1}POS}{324}{subsubsection.9.52.1.1}% +\contentsline {subsection}{\numberline {9.52.2}Typedef Documentation}{324}{subsection.9.52.2}% +\contentsline {subsubsection}{\numberline {9.52.2.1}PhyloArray}{324}{subsubsection.9.52.2.1}% +\contentsline {subsubsection}{\numberline {9.52.2.2}PhyloCounter}{325}{subsubsection.9.52.2.2}% +\contentsline {subsubsection}{\numberline {9.52.2.3}PhyloCounters}{325}{subsubsection.9.52.2.3}% +\contentsline {subsubsection}{\numberline {9.52.2.4}PhyloModel}{325}{subsubsection.9.52.2.4}% +\contentsline {subsubsection}{\numberline {9.52.2.5}PhyloPowerSet}{325}{subsubsection.9.52.2.5}% +\contentsline {subsubsection}{\numberline {9.52.2.6}PhyloRule}{325}{subsubsection.9.52.2.6}% +\contentsline {subsubsection}{\numberline {9.52.2.7}PhyloRuleData}{325}{subsubsection.9.52.2.7}% +\contentsline {subsubsection}{\numberline {9.52.2.8}PhyloRuleDyn}{326}{subsubsection.9.52.2.8}% +\contentsline {subsubsection}{\numberline {9.52.2.9}PhyloRules}{326}{subsubsection.9.52.2.9}% +\contentsline {subsubsection}{\numberline {9.52.2.10}PhyloRulesDyn}{326}{subsubsection.9.52.2.10}% +\contentsline {subsubsection}{\numberline {9.52.2.11}PhyloStatsCounter}{326}{subsubsection.9.52.2.11}% +\contentsline {subsubsection}{\numberline {9.52.2.12}PhyloSupport}{326}{subsubsection.9.52.2.12}% +\contentsline {section}{\numberline {9.53}include/barry/powerset-\/bones.hpp File Reference}{326}{section.9.53}% +\contentsline {section}{\numberline {9.54}include/barry/powerset-\/meat.hpp File Reference}{327}{section.9.54}% +\contentsline {section}{\numberline {9.55}include/barry/progress.hpp File Reference}{327}{section.9.55}% +\contentsline {subsection}{\numberline {9.55.1}Macro Definition Documentation}{328}{subsection.9.55.1}% +\contentsline {subsubsection}{\numberline {9.55.1.1}BARRY\_PROGRESS\_BAR\_WIDTH}{328}{subsubsection.9.55.1.1}% +\contentsline {section}{\numberline {9.56}include/barry/rules-\/bones.hpp File Reference}{328}{section.9.56}% +\contentsline {subsection}{\numberline {9.56.1}Function Documentation}{329}{subsection.9.56.1}% +\contentsline {subsubsection}{\numberline {9.56.1.1}rule\_fun\_default()}{329}{subsubsection.9.56.1.1}% +\contentsline {section}{\numberline {9.57}include/barry/rules-\/meat.hpp File Reference}{329}{section.9.57}% +\contentsline {section}{\numberline {9.58}include/barry/statscounter-\/bones.hpp File Reference}{329}{section.9.58}% +\contentsline {section}{\numberline {9.59}include/barry/statscounter-\/meat.hpp File Reference}{330}{section.9.59}% +\contentsline {subsection}{\numberline {9.59.1}Macro Definition Documentation}{331}{subsection.9.59.1}% +\contentsline {subsubsection}{\numberline {9.59.1.1}STATSCOUNTER\_TEMPLATE}{331}{subsubsection.9.59.1.1}% +\contentsline {subsubsection}{\numberline {9.59.1.2}STATSCOUNTER\_TEMPLATE\_ARGS}{331}{subsubsection.9.59.1.2}% +\contentsline {subsubsection}{\numberline {9.59.1.3}STATSCOUNTER\_TYPE}{331}{subsubsection.9.59.1.3}% +\contentsline {subsection}{\numberline {9.59.2}Function Documentation}{331}{subsection.9.59.2}% +\contentsline {subsubsection}{\numberline {9.59.2.1}clear()}{331}{subsubsection.9.59.2.1}% +\contentsline {subsubsection}{\numberline {9.59.2.2}for()}{332}{subsubsection.9.59.2.2}% +\contentsline {subsubsection}{\numberline {9.59.2.3}resize()}{332}{subsubsection.9.59.2.3}% +\contentsline {subsubsection}{\numberline {9.59.2.4}STATSCOUNTER\_TEMPLATE()\hspace {0.1cm}{\footnotesize \ttfamily [1/9]}}{332}{subsubsection.9.59.2.4}% +\contentsline {subsubsection}{\numberline {9.59.2.5}STATSCOUNTER\_TEMPLATE()\hspace {0.1cm}{\footnotesize \ttfamily [2/9]}}{332}{subsubsection.9.59.2.5}% +\contentsline {subsubsection}{\numberline {9.59.2.6}STATSCOUNTER\_TEMPLATE()\hspace {0.1cm}{\footnotesize \ttfamily [3/9]}}{332}{subsubsection.9.59.2.6}% +\contentsline {subsubsection}{\numberline {9.59.2.7}STATSCOUNTER\_TEMPLATE()\hspace {0.1cm}{\footnotesize \ttfamily [4/9]}}{332}{subsubsection.9.59.2.7}% +\contentsline {subsubsection}{\numberline {9.59.2.8}STATSCOUNTER\_TEMPLATE()\hspace {0.1cm}{\footnotesize \ttfamily [5/9]}}{333}{subsubsection.9.59.2.8}% +\contentsline {subsubsection}{\numberline {9.59.2.9}STATSCOUNTER\_TEMPLATE()\hspace {0.1cm}{\footnotesize \ttfamily [6/9]}}{333}{subsubsection.9.59.2.9}% +\contentsline {subsubsection}{\numberline {9.59.2.10}STATSCOUNTER\_TEMPLATE()\hspace {0.1cm}{\footnotesize \ttfamily [7/9]}}{333}{subsubsection.9.59.2.10}% +\contentsline {subsubsection}{\numberline {9.59.2.11}STATSCOUNTER\_TEMPLATE()\hspace {0.1cm}{\footnotesize \ttfamily [8/9]}}{333}{subsubsection.9.59.2.11}% +\contentsline {subsubsection}{\numberline {9.59.2.12}STATSCOUNTER\_TEMPLATE()\hspace {0.1cm}{\footnotesize \ttfamily [9/9]}}{333}{subsubsection.9.59.2.12}% +\contentsline {subsection}{\numberline {9.59.3}Variable Documentation}{333}{subsection.9.59.3}% +\contentsline {subsubsection}{\numberline {9.59.3.1}counter}{334}{subsubsection.9.59.3.1}% +\contentsline {subsubsection}{\numberline {9.59.3.2}counter\_deleted}{334}{subsubsection.9.59.3.2}% +\contentsline {subsubsection}{\numberline {9.59.3.3}counters}{334}{subsubsection.9.59.3.3}% +\contentsline {subsubsection}{\numberline {9.59.3.4}counters\_}{334}{subsubsection.9.59.3.4}% +\contentsline {subsubsection}{\numberline {9.59.3.5}current\_stats}{334}{subsubsection.9.59.3.5}% +\contentsline {subsubsection}{\numberline {9.59.3.6}EmptyArray}{335}{subsubsection.9.59.3.6}% +\contentsline {subsubsection}{\numberline {9.59.3.7}f\_}{335}{subsubsection.9.59.3.7}% +\contentsline {subsubsection}{\numberline {9.59.3.8}j}{335}{subsubsection.9.59.3.8}% +\contentsline {subsubsection}{\numberline {9.59.3.9}return}{335}{subsubsection.9.59.3.9}% +\contentsline {section}{\numberline {9.60}include/barry/support-\/bones.hpp File Reference}{335}{section.9.60}% +\contentsline {section}{\numberline {9.61}include/barry/support-\/meat.hpp File Reference}{336}{section.9.61}% +\contentsline {subsection}{\numberline {9.61.1}Macro Definition Documentation}{336}{subsection.9.61.1}% +\contentsline {subsubsection}{\numberline {9.61.1.1}BARRY\_SUPPORT\_MEAT\_HPP}{336}{subsubsection.9.61.1.1}% +\contentsline {section}{\numberline {9.62}include/barry/typedefs.hpp File Reference}{337}{section.9.62}% +\contentsline {subsection}{\numberline {9.62.1}Typedef Documentation}{339}{subsection.9.62.1}% +\contentsline {subsubsection}{\numberline {9.62.1.1}Col\_type}{339}{subsubsection.9.62.1.1}% +\contentsline {subsubsection}{\numberline {9.62.1.2}Counter\_fun\_type}{339}{subsubsection.9.62.1.2}% +\contentsline {subsubsection}{\numberline {9.62.1.3}Counts\_type}{339}{subsubsection.9.62.1.3}% +\contentsline {subsubsection}{\numberline {9.62.1.4}Hasher\_fun\_type}{339}{subsubsection.9.62.1.4}% +\contentsline {subsubsection}{\numberline {9.62.1.5}MapVec\_type}{340}{subsubsection.9.62.1.5}% +\contentsline {subsubsection}{\numberline {9.62.1.6}Row\_type}{340}{subsubsection.9.62.1.6}% +\contentsline {subsubsection}{\numberline {9.62.1.7}Rule\_fun\_type}{340}{subsubsection.9.62.1.7}% +\contentsline {subsection}{\numberline {9.62.2}Function Documentation}{340}{subsection.9.62.2}% +\contentsline {subsubsection}{\numberline {9.62.2.1}sort\_array()}{340}{subsubsection.9.62.2.1}% +\contentsline {subsubsection}{\numberline {9.62.2.2}vec\_equal()}{341}{subsubsection.9.62.2.2}% +\contentsline {subsubsection}{\numberline {9.62.2.3}vec\_equal\_approx()}{341}{subsubsection.9.62.2.3}% +\contentsline {subsubsection}{\numberline {9.62.2.4}vec\_inner\_prod()\hspace {0.1cm}{\footnotesize \ttfamily [1/2]}}{342}{subsubsection.9.62.2.4}% +\contentsline {subsubsection}{\numberline {9.62.2.5}vec\_inner\_prod()\hspace {0.1cm}{\footnotesize \ttfamily [2/2]}}{342}{subsubsection.9.62.2.5}% +\contentsline {section}{\numberline {9.63}README.\discretionary {\mbox {\scriptsize $\DOTSB \leftarrow \joinrel \rhook $}}{}{}md File Reference}{342}{section.9.63}% +\contentsline {chapter}{Index}{343}{section*.267}% diff --git a/latex/rules-bones_8hpp.tex b/latex/rules-bones_8hpp.tex index 00c9481af..b1ae3ff69 100644 --- a/latex/rules-bones_8hpp.tex +++ b/latex/rules-bones_8hpp.tex @@ -18,7 +18,7 @@ \doxysubsection*{Functions} \begin{DoxyCompactItemize} \item -{\footnotesize template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Type $>$ }\\bool \mbox{\hyperlink{rules-bones_8hpp_aed66b31fc6d0c598fe054051c7d449aa}{rule\+\_\+fun\+\_\+default}} (const Array\+\_\+\+Type $\ast$array, size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Data\+\_\+\+Type $\ast$dat) +{\footnotesize template$<$typename Array\+\_\+\+Type , typename Data\+\_\+\+Type $>$ }\\bool \mbox{\hyperlink{rules-bones_8hpp_aed66b31fc6d0c598fe054051c7d449aa}{rule\+\_\+fun\+\_\+default}} (const Array\+\_\+\+Type $\ast$array, size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}}, size\+\_\+t \mbox{\hyperlink{statscounter-meat_8hpp_abf2d9f657468255c5b9964ea2b6e9e15}{j}}, Data\+\_\+\+Type $\ast$dat) \end{DoxyCompactItemize} diff --git a/latex/rules-bones_8hpp__dep__incl.pdf b/latex/rules-bones_8hpp__dep__incl.pdf index 9d54e194e..b71f89929 100644 Binary files a/latex/rules-bones_8hpp__dep__incl.pdf and b/latex/rules-bones_8hpp__dep__incl.pdf differ diff --git a/latex/rules-meat_8hpp__dep__incl.pdf b/latex/rules-meat_8hpp__dep__incl.pdf index bc0739e69..7c4560052 100644 Binary files a/latex/rules-meat_8hpp__dep__incl.pdf and b/latex/rules-meat_8hpp__dep__incl.pdf differ diff --git a/latex/statscounter-bones_8hpp__dep__incl.pdf b/latex/statscounter-bones_8hpp__dep__incl.pdf index f8a18eb95..12e9bfc74 100644 Binary files a/latex/statscounter-bones_8hpp__dep__incl.pdf and b/latex/statscounter-bones_8hpp__dep__incl.pdf differ diff --git a/latex/statscounter-meat_8hpp.tex b/latex/statscounter-meat_8hpp.tex index 6a3d789ec..4405d65ac 100644 --- a/latex/statscounter-meat_8hpp.tex +++ b/latex/statscounter-meat_8hpp.tex @@ -15,7 +15,7 @@ \item \#define \mbox{\hyperlink{statscounter-meat_8hpp_a4f3342988a37f4ea182c13f9abb589f1}{STATSCOUNTER\+\_\+\+TEMPLATE\+\_\+\+ARGS}}()~$<$typename Array\+\_\+\+Type, typename Data\+\_\+\+Type$>$ \item -\#define \mbox{\hyperlink{statscounter-meat_8hpp_a0be2a43cbb1ef60a069583b540c72a5e}{STATSCOUNTER\+\_\+\+TEMPLATE}}(\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, b)~ template \mbox{\hyperlink{statscounter-meat_8hpp_a4f3342988a37f4ea182c13f9abb589f1}{STATSCOUNTER\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{statscounter-meat_8hpp_ac10625f9e9aacf59fb0fa88ca370ed9b}{STATSCOUNTER\+\_\+\+TYPE}}()\+::b +\#define \mbox{\hyperlink{statscounter-meat_8hpp_a0be2a43cbb1ef60a069583b540c72a5e}{STATSCOUNTER\+\_\+\+TEMPLATE}}(a, b)~ template \mbox{\hyperlink{statscounter-meat_8hpp_a4f3342988a37f4ea182c13f9abb589f1}{STATSCOUNTER\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{statscounter-meat_8hpp_ac10625f9e9aacf59fb0fa88ca370ed9b}{STATSCOUNTER\+\_\+\+TYPE}}()\+::b \end{DoxyCompactItemize} \doxysubsection*{Functions} \begin{DoxyCompactItemize} @@ -30,15 +30,15 @@ \item \mbox{\hyperlink{statscounter-meat_8hpp_acb127b0f8d8b3764857ab521e17c3f15}{STATSCOUNTER\+\_\+\+TEMPLATE}} (void, add\+\_\+counter)(\mbox{\hyperlink{class_counter}{Counter}}$<$ Array\+\_\+\+Type \item -\mbox{\hyperlink{statscounter-meat_8hpp_a001697fe93836f604a469b412e057b86}{STATSCOUNTER\+\_\+\+TEMPLATE}} (void, \mbox{\hyperlink{model-meat_8hpp_a891cce5f86ba09c4e4a5202a5f6021b9}{set\+\_\+counters}})(\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type +\mbox{\hyperlink{statscounter-meat_8hpp_a001697fe93836f604a469b412e057b86}{STATSCOUNTER\+\_\+\+TEMPLATE}} (void, set\+\_\+counters)(\mbox{\hyperlink{class_counters}{Counters}}$<$ Array\+\_\+\+Type \item -\mbox{\hyperlink{statscounter-meat_8hpp_a5b4bb8d6659a6fc0b9ea281fdca30310}{STATSCOUNTER\+\_\+\+TEMPLATE}} (void, count\+\_\+init)(size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} +\mbox{\hyperlink{statscounter-meat_8hpp_a5b4bb8d6659a6fc0b9ea281fdca30310}{STATSCOUNTER\+\_\+\+TEMPLATE}} (void, count\+\_\+init)(size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} \item -\mbox{\hyperlink{statscounter-meat_8hpp_acda6567d00fd45cc346957cbe93d5a9c}{current\+\_\+stats}} \mbox{\hyperlink{statscounter-meat_8hpp_ae40d2e4f8ecd8bbe53d42f61bc802f8d}{resize}} (\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{size}}(), 0.\+0) +\mbox{\hyperlink{statscounter-meat_8hpp_acda6567d00fd45cc346957cbe93d5a9c}{current\+\_\+stats}} \mbox{\hyperlink{statscounter-meat_8hpp_ae40d2e4f8ecd8bbe53d42f61bc802f8d}{resize}} (\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$size(), 0.\+0) \item -\mbox{\hyperlink{statscounter-meat_8hpp_ab4f852818ab1c2fe5cca0279a984d5dc}{for}} (size\+\_\+t n=0u;n$<$ \mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{size}}();++n) \mbox{\hyperlink{statscounter-meat_8hpp_acda6567d00fd45cc346957cbe93d5a9c}{current\+\_\+stats}}\mbox{[}n\mbox{]} +\mbox{\hyperlink{statscounter-meat_8hpp_ab4f852818ab1c2fe5cca0279a984d5dc}{for}} (size\+\_\+t n=0u;n$<$ \mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$size();++n) \mbox{\hyperlink{statscounter-meat_8hpp_acda6567d00fd45cc346957cbe93d5a9c}{current\+\_\+stats}}\mbox{[}n\mbox{]} \item -\mbox{\hyperlink{statscounter-meat_8hpp_a644e236b1ad974fff8762b7ac8fd0144}{STATSCOUNTER\+\_\+\+TEMPLATE}} (void, count\+\_\+current)(size\+\_\+t \mbox{\hyperlink{model-meat_8hpp_a981162f997bbddbdcaf8234da58a6094}{i}} +\mbox{\hyperlink{statscounter-meat_8hpp_a644e236b1ad974fff8762b7ac8fd0144}{STATSCOUNTER\+\_\+\+TEMPLATE}} (void, count\+\_\+current)(size\+\_\+t \mbox{\hyperlink{counters-meat_8hpp_ae46bd26d7133dfe98f8cec7c5ac5c7a1}{i}} \item \mbox{\hyperlink{statscounter-meat_8hpp_a526cc3e5befb645e099dd98aee25295f}{STATSCOUNTER\+\_\+\+TEMPLATE}} (std\+::vector$<$ std\+::string $>$, get\+\_\+names)() const \item @@ -72,7 +72,7 @@ \index{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!STATSCOUNTER\_TEMPLATE@{STATSCOUNTER\_TEMPLATE}} \index{STATSCOUNTER\_TEMPLATE@{STATSCOUNTER\_TEMPLATE}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{STATSCOUNTER\_TEMPLATE}{STATSCOUNTER\_TEMPLATE}} -{\footnotesize\ttfamily \#define STATSCOUNTER\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{statscounter-meat_8hpp_a4f3342988a37f4ea182c13f9abb589f1}{STATSCOUNTER\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline \mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}} \mbox{\hyperlink{statscounter-meat_8hpp_ac10625f9e9aacf59fb0fa88ca370ed9b}{STATSCOUNTER\+\_\+\+TYPE}}()\+::b} +{\footnotesize\ttfamily \#define STATSCOUNTER\+\_\+\+TEMPLATE(\begin{DoxyParamCaption}\item[{}]{a, }\item[{}]{b }\end{DoxyParamCaption})~ template \mbox{\hyperlink{statscounter-meat_8hpp_a4f3342988a37f4ea182c13f9abb589f1}{STATSCOUNTER\+\_\+\+TEMPLATE\+\_\+\+ARGS}}() inline a \mbox{\hyperlink{statscounter-meat_8hpp_ac10625f9e9aacf59fb0fa88ca370ed9b}{STATSCOUNTER\+\_\+\+TYPE}}()\+::b} @@ -111,7 +111,7 @@ \index{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!for@{for}} \index{for@{for}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{for()}{for()}} -{\footnotesize\ttfamily for (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{n = {\ttfamily 0u;n$<$~\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$\mbox{\hyperlink{model-meat_8hpp_a8d73b944a5569bd842f636e4b9d420f6}{size}}();++n} }\end{DoxyParamCaption})} +{\footnotesize\ttfamily for (\begin{DoxyParamCaption}\item[{size\+\_\+t}]{n = {\ttfamily 0u;n$<$~\mbox{\hyperlink{statscounter-meat_8hpp_a782c48a908662b34845b6f654f929788}{counters}}-\/$>$size();++n} }\end{DoxyParamCaption})} \mbox{\Hypertarget{statscounter-meat_8hpp_ae40d2e4f8ecd8bbe53d42f61bc802f8d}\label{statscounter-meat_8hpp_ae40d2e4f8ecd8bbe53d42f61bc802f8d}} \index{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!resize@{resize}} @@ -187,7 +187,7 @@ \index{statscounter-\/meat.hpp@{statscounter-\/meat.hpp}!STATSCOUNTER\_TEMPLATE@{STATSCOUNTER\_TEMPLATE}} \index{STATSCOUNTER\_TEMPLATE@{STATSCOUNTER\_TEMPLATE}!statscounter-\/meat.hpp@{statscounter-\/meat.hpp}} \doxysubsubsection{\texorpdfstring{STATSCOUNTER\_TEMPLATE()}{STATSCOUNTER\_TEMPLATE()}\hspace{0.1cm}{\footnotesize\ttfamily [9/9]}} -{\footnotesize\ttfamily STATSCOUNTER\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{\mbox{\hyperlink{model-meat_8hpp_a891cce5f86ba09c4e4a5202a5f6021b9}{set\+\_\+counters}}}]{ }\end{DoxyParamCaption})} +{\footnotesize\ttfamily STATSCOUNTER\+\_\+\+TEMPLATE (\begin{DoxyParamCaption}\item[{void}]{, }\item[{set\+\_\+counters}]{ }\end{DoxyParamCaption})} diff --git a/latex/statscounter-meat_8hpp__dep__incl.pdf b/latex/statscounter-meat_8hpp__dep__incl.pdf index 9336bef26..d5c393115 100644 Binary files a/latex/statscounter-meat_8hpp__dep__incl.pdf and b/latex/statscounter-meat_8hpp__dep__incl.pdf differ diff --git a/latex/support-bones_8hpp__dep__incl.pdf b/latex/support-bones_8hpp__dep__incl.pdf index 5e70b9175..fd85a07f8 100644 Binary files a/latex/support-bones_8hpp__dep__incl.pdf and b/latex/support-bones_8hpp__dep__incl.pdf differ diff --git a/latex/support-meat_8hpp__dep__incl.pdf b/latex/support-meat_8hpp__dep__incl.pdf index 75e4767df..ca1618613 100644 Binary files a/latex/support-meat_8hpp__dep__incl.pdf and b/latex/support-meat_8hpp__dep__incl.pdf differ diff --git a/latex/typedefs_8hpp.tex b/latex/typedefs_8hpp.tex index 085f51607..f4be86d53 100644 --- a/latex/typedefs_8hpp.tex +++ b/latex/typedefs_8hpp.tex @@ -59,16 +59,16 @@ \item std\+::vector$<$ size\+\_\+t $>$ \mbox{\hyperlink{typedefs_8hpp_ab1d4f47a245caa5ee58da49231c054ca}{sort\+\_\+array}} (const double $\ast$v, size\+\_\+t start, size\+\_\+t ncols, size\+\_\+t nrows) \begin{DoxyCompactList}\small\item\em Ascending sorting an array. \end{DoxyCompactList}\item -{\footnotesize template$<$typename T $>$ }\\T \mbox{\hyperlink{typedefs_8hpp_ab9ddeecf87d68d3f44dd6a94b10aa786}{vec\+\_\+inner\+\_\+prod}} (const T $\ast$\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, const T $\ast$b, size\+\_\+t n) +{\footnotesize template$<$typename T $>$ }\\T \mbox{\hyperlink{typedefs_8hpp_ab9ddeecf87d68d3f44dd6a94b10aa786}{vec\+\_\+inner\+\_\+prod}} (const T $\ast$a, const T $\ast$b, size\+\_\+t n) \item -template$<$$>$ double \mbox{\hyperlink{typedefs_8hpp_af6f9c021aa2e49b1cb82fbd32026f1dc}{vec\+\_\+inner\+\_\+prod}} (const double $\ast$\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, const double $\ast$b, size\+\_\+t n) +template$<$$>$ double \mbox{\hyperlink{typedefs_8hpp_af6f9c021aa2e49b1cb82fbd32026f1dc}{vec\+\_\+inner\+\_\+prod}} (const double $\ast$a, const double $\ast$b, size\+\_\+t n) \end{DoxyCompactItemize} \textbf{ }\par \begin{DoxyCompactItemize} \item -{\footnotesize template$<$typename T $>$ }\\bool \mbox{\hyperlink{typedefs_8hpp_a0520b46efb182c4254e257ff5c5e7394}{vec\+\_\+equal}} (const std\+::vector$<$ T $>$ \&\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, const std\+::vector$<$ T $>$ \&b) +{\footnotesize template$<$typename T $>$ }\\bool \mbox{\hyperlink{typedefs_8hpp_a0520b46efb182c4254e257ff5c5e7394}{vec\+\_\+equal}} (const std\+::vector$<$ T $>$ \&a, const std\+::vector$<$ T $>$ \&b) \begin{DoxyCompactList}\small\item\em Compares if -\/a-\/ and -\/b-\/ are equal. \end{DoxyCompactList}\item -{\footnotesize template$<$typename T $>$ }\\bool \mbox{\hyperlink{typedefs_8hpp_aed8ddfe5ae95bf4d6f76221ce06566fb}{vec\+\_\+equal\+\_\+approx}} (const std\+::vector$<$ T $>$ \&\mbox{\hyperlink{model-meat_8hpp_a81e02a278aaeae99b5dbef355ee6dd2f}{a}}, const std\+::vector$<$ T $>$ \&b, double eps=1e-\/100) +{\footnotesize template$<$typename T $>$ }\\bool \mbox{\hyperlink{typedefs_8hpp_aed8ddfe5ae95bf4d6f76221ce06566fb}{vec\+\_\+equal\+\_\+approx}} (const std\+::vector$<$ T $>$ \&a, const std\+::vector$<$ T $>$ \&b, double eps=1e-\/100) \end{DoxyCompactItemize} \doxysubsection*{Variables} diff --git a/latex/typedefs_8hpp__dep__incl.pdf b/latex/typedefs_8hpp__dep__incl.pdf index 3b3c148a3..3ce2e3e2e 100644 Binary files a/latex/typedefs_8hpp__dep__incl.pdf and b/latex/typedefs_8hpp__dep__incl.pdf differ diff --git a/latex/typedefs_8hpp__incl.pdf b/latex/typedefs_8hpp__incl.pdf index bdb5593c9..cccc1039c 100644 Binary files a/latex/typedefs_8hpp__incl.pdf and b/latex/typedefs_8hpp__incl.pdf differ diff --git a/menudata.js b/menudata.js index 1da65bb56..b26f48719 100644 --- a/menudata.js +++ b/menudata.js @@ -126,39 +126,21 @@ var menudata={children:[ {text:"z",url:"globals_z.html#index_z"}]}, {text:"Functions",url:"globals_func.html",children:[ {text:"b",url:"globals_func.html#index_b"}, -{text:"c",url:"globals_func_c.html#index_c"}, -{text:"d",url:"globals_func_d.html#index_d"}, -{text:"f",url:"globals_func_f.html#index_f"}, -{text:"g",url:"globals_func_g.html#index_g"}, -{text:"h",url:"globals_func_h.html#index_h"}, -{text:"i",url:"globals_func_i.html#index_i"}, -{text:"k",url:"globals_func_k.html#index_k"}, -{text:"l",url:"globals_func_l.html#index_l"}, -{text:"m",url:"globals_func_m.html#index_m"}, -{text:"n",url:"globals_func_n.html#index_n"}, -{text:"o",url:"globals_func_o.html#index_o"}, -{text:"p",url:"globals_func_p.html#index_p"}, -{text:"r",url:"globals_func_r.html#index_r"}, -{text:"s",url:"globals_func_s.html#index_s"}, -{text:"t",url:"globals_func_t.html#index_t"}, -{text:"u",url:"globals_func_u.html#index_u"}, -{text:"v",url:"globals_func_v.html#index_v"}]}, -{text:"Variables",url:"globals_vars.html",children:[ -{text:"a",url:"globals_vars.html#index_a"}, -{text:"c",url:"globals_vars.html#index_c"}, -{text:"d",url:"globals_vars.html#index_d"}, -{text:"e",url:"globals_vars.html#index_e"}, -{text:"f",url:"globals_vars.html#index_f"}, -{text:"h",url:"globals_vars.html#index_h"}, -{text:"i",url:"globals_vars.html#index_i"}, -{text:"j",url:"globals_vars.html#index_j"}, -{text:"k",url:"globals_vars.html#index_k"}, -{text:"l",url:"globals_vars.html#index_l"}, -{text:"n",url:"globals_vars.html#index_n"}, -{text:"p",url:"globals_vars.html#index_p"}, -{text:"r",url:"globals_vars.html#index_r"}, -{text:"s",url:"globals_vars.html#index_s"}, -{text:"t",url:"globals_vars.html#index_t"}]}, +{text:"c",url:"globals_func.html#index_c"}, +{text:"d",url:"globals_func.html#index_d"}, +{text:"f",url:"globals_func.html#index_f"}, +{text:"g",url:"globals_func.html#index_g"}, +{text:"h",url:"globals_func.html#index_h"}, +{text:"i",url:"globals_func.html#index_i"}, +{text:"k",url:"globals_func.html#index_k"}, +{text:"l",url:"globals_func.html#index_l"}, +{text:"n",url:"globals_func.html#index_n"}, +{text:"o",url:"globals_func.html#index_o"}, +{text:"r",url:"globals_func.html#index_r"}, +{text:"s",url:"globals_func.html#index_s"}, +{text:"u",url:"globals_func.html#index_u"}, +{text:"v",url:"globals_func.html#index_v"}]}, +{text:"Variables",url:"globals_vars.html"}, {text:"Typedefs",url:"globals_type.html",children:[ {text:"c",url:"globals_type.html#index_c"}, {text:"d",url:"globals_type.html#index_d"}, diff --git a/model-bones_8hpp.html b/model-bones_8hpp.html index 007bd36fd..ac606e58e 100644 --- a/model-bones_8hpp.html +++ b/model-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/model-bones_8hpp_source.html b/model-bones_8hpp_source.html index 0aca91270..53c655647 100644 --- a/model-bones_8hpp_source.html +++ b/model-bones_8hpp_source.html @@ -101,8 +101,8 @@
                                                                                      3 
                                                                                      28 template<
                                                                                      29  typename Array_Type = BArray<>,
                                                                                      -
                                                                                      30  typename Data_Counter_Type = bool,
                                                                                      -
                                                                                      31  typename Data_Rule_Type = bool,
                                                                                      +
                                                                                      30  typename Data_Counter_Type = bool,
                                                                                      +
                                                                                      31  typename Data_Rule_Type = bool,
                                                                                      32  typename Data_Rule_Dyn_Type = bool
                                                                                      33  >
                                                                                      34 class Model {
                                                                                      @@ -137,7 +137,7 @@
                                                                                      104  bool delete_rules = false;
                                                                                      105  bool delete_rules_dyn = false;
                                                                                      106 
                                                                                      -
                                                                                      122  std::function<std::vector<double>(double *, size_t k)>
                                                                                      +
                                                                                      122  std::function<std::vector<double>(double *, size_t k)>
                                                                                      123  transform_model_fun = nullptr;
                                                                                      124 
                                                                                      125  std::vector< std::string > transform_model_term_names;
                                                                                      @@ -187,204 +187,210 @@
                                                                                      170  delete rengine;
                                                                                      171  };
                                                                                      172 
                                                                                      -
                                                                                      173  void store_psets() noexcept;
                                                                                      -
                                                                                      174  std::vector< double > gen_key(const Array_Type & Array_);
                                                                                      +
                                                                                      173  void store_psets() noexcept;
                                                                                      +
                                                                                      174  std::vector< double > gen_key(const Array_Type & Array_);
                                                                                      175 
                                                                                      -
                                                                                      182  void add_counter(Counter<Array_Type, Data_Counter_Type> & counter);
                                                                                      -
                                                                                      183  void add_counter(
                                                                                      -
                                                                                      184  Counter_fun_type<Array_Type,Data_Counter_Type> count_fun_,
                                                                                      -
                                                                                      185  Counter_fun_type<Array_Type,Data_Counter_Type> init_fun_ = nullptr,
                                                                                      -
                                                                                      186  Data_Counter_Type data_ = nullptr
                                                                                      +
                                                                                      182  void add_counter(Counter<Array_Type, Data_Counter_Type> & counter);
                                                                                      +
                                                                                      183  void add_counter(
                                                                                      +
                                                                                      184  Counter_fun_type<Array_Type,Data_Counter_Type> count_fun_,
                                                                                      +
                                                                                      185  Counter_fun_type<Array_Type,Data_Counter_Type> init_fun_ = nullptr,
                                                                                      +
                                                                                      186  Data_Counter_Type data_ = nullptr
                                                                                      187  );
                                                                                      -
                                                                                      188  void set_counters(Counters<Array_Type,Data_Counter_Type> * counters_);
                                                                                      -
                                                                                      189  void add_hasher(Hasher_fun_type<Array_Type,Data_Counter_Type> fun_);
                                                                                      +
                                                                                      188  void set_counters(Counters<Array_Type,Data_Counter_Type> * counters_);
                                                                                      +
                                                                                      189  void add_hasher(Hasher_fun_type<Array_Type,Data_Counter_Type> fun_);
                                                                                      191 
                                                                                      -
                                                                                      198  void add_rule(Rule<Array_Type, Data_Rule_Type> & rule);
                                                                                      +
                                                                                      198  void add_rule(Rule<Array_Type, Data_Rule_Type> & rule);
                                                                                      199  void add_rule(
                                                                                      -
                                                                                      200  Rule_fun_type<Array_Type, Data_Rule_Type> count_fun_,
                                                                                      -
                                                                                      201  Data_Rule_Type data_
                                                                                      +
                                                                                      200  Rule_fun_type<Array_Type, Data_Rule_Type> count_fun_,
                                                                                      +
                                                                                      201  Data_Rule_Type data_
                                                                                      202  );
                                                                                      203 
                                                                                      -
                                                                                      204  void set_rules(Rules<Array_Type,Data_Rule_Type> * rules_);
                                                                                      +
                                                                                      204  void set_rules(Rules<Array_Type,Data_Rule_Type> * rules_);
                                                                                      205 
                                                                                      -
                                                                                      206  void add_rule_dyn(Rule<Array_Type, Data_Rule_Dyn_Type> & rule);
                                                                                      -
                                                                                      207  void add_rule_dyn(
                                                                                      +
                                                                                      206  void add_rule_dyn(Rule<Array_Type, Data_Rule_Dyn_Type> & rule);
                                                                                      +
                                                                                      207  void add_rule_dyn(
                                                                                      208  Rule_fun_type<Array_Type, Data_Rule_Dyn_Type> count_fun_,
                                                                                      -
                                                                                      209  Data_Rule_Dyn_Type data_
                                                                                      +
                                                                                      209  Data_Rule_Dyn_Type data_
                                                                                      210  );
                                                                                      211 
                                                                                      -
                                                                                      212  void set_rules_dyn(Rules<Array_Type,Data_Rule_Dyn_Type> * rules_);
                                                                                      +
                                                                                      212  void set_rules_dyn(Rules<Array_Type,Data_Rule_Dyn_Type> * rules_);
                                                                                      214 
                                                                                      215 
                                                                                      -
                                                                                      225  size_t add_array(const Array_Type & Array_, bool force_new = false);
                                                                                      +
                                                                                      225  size_t add_array(const Array_Type & Array_, bool force_new = false);
                                                                                      226 
                                                                                      227 
                                                                                      -
                                                                                      240  double likelihood(
                                                                                      -
                                                                                      241  const std::vector<double> & params,
                                                                                      -
                                                                                      242  const size_t & i,
                                                                                      -
                                                                                      243  bool as_log = false
                                                                                      -
                                                                                      244  );
                                                                                      -
                                                                                      245 
                                                                                      -
                                                                                      246  double likelihood(
                                                                                      -
                                                                                      247  const std::vector<double> & params,
                                                                                      -
                                                                                      248  const Array_Type & Array_,
                                                                                      -
                                                                                      249  int i = -1,
                                                                                      -
                                                                                      250  bool as_log = false
                                                                                      -
                                                                                      251  );
                                                                                      -
                                                                                      252 
                                                                                      -
                                                                                      253  double likelihood(
                                                                                      -
                                                                                      254  const std::vector<double> & params,
                                                                                      -
                                                                                      255  const std::vector<double> & target_,
                                                                                      -
                                                                                      256  const size_t & i,
                                                                                      -
                                                                                      257  bool as_log = false
                                                                                      -
                                                                                      258  );
                                                                                      -
                                                                                      259 
                                                                                      -
                                                                                      260  double likelihood(
                                                                                      -
                                                                                      261  const std::vector<double> & params,
                                                                                      -
                                                                                      262  const double * target_,
                                                                                      -
                                                                                      263  const size_t & i,
                                                                                      -
                                                                                      264  bool as_log = false
                                                                                      -
                                                                                      265  );
                                                                                      -
                                                                                      266 
                                                                                      -
                                                                                      267  double likelihood_total(
                                                                                      -
                                                                                      268  const std::vector<double> & params,
                                                                                      -
                                                                                      269  bool as_log = false
                                                                                      -
                                                                                      270  );
                                                                                      -
                                                                                      272 
                                                                                      -
                                                                                      282  double get_norm_const(
                                                                                      -
                                                                                      283  const std::vector< double > & params,
                                                                                      -
                                                                                      284  const size_t & i,
                                                                                      -
                                                                                      285  bool as_log = false
                                                                                      -
                                                                                      286  );
                                                                                      -
                                                                                      287 
                                                                                      -
                                                                                      288  const std::vector< Array_Type > * get_pset(
                                                                                      -
                                                                                      289  const size_t & i
                                                                                      -
                                                                                      290  );
                                                                                      -
                                                                                      291 
                                                                                      -
                                                                                      292  const std::vector< double > * get_pset_stats(
                                                                                      -
                                                                                      293  const size_t & i
                                                                                      -
                                                                                      294  );
                                                                                      -
                                                                                      296 
                                                                                      -
                                                                                      297  void print_stats(size_t i) const;
                                                                                      -
                                                                                      298 
                                                                                      -
                                                                                      302  virtual void print() const;
                                                                                      -
                                                                                      303 
                                                                                      -
                                                                                      304  Array_Type sample(const Array_Type & Array_, const std::vector<double> & params = {});
                                                                                      -
                                                                                      305  Array_Type sample(const size_t & i, const std::vector<double> & params);
                                                                                      -
                                                                                      306 
                                                                                      -
                                                                                      320  double conditional_prob(
                                                                                      -
                                                                                      321  const Array_Type & Array_,
                                                                                      -
                                                                                      322  const std::vector< double > & params,
                                                                                      -
                                                                                      323  size_t i,
                                                                                      -
                                                                                      324  size_t j
                                                                                      -
                                                                                      325  );
                                                                                      -
                                                                                      326 
                                                                                      -
                                                                                      340  size_t size() const noexcept;
                                                                                      -
                                                                                      341  size_t size_unique() const noexcept;
                                                                                      -
                                                                                      342  size_t nterms() const noexcept;
                                                                                      -
                                                                                      343  size_t nrules() const noexcept;
                                                                                      -
                                                                                      344  size_t nrules_dyn() const noexcept;
                                                                                      -
                                                                                      345  size_t support_size() const noexcept;
                                                                                      -
                                                                                      346  std::vector< std::string > colnames() const;
                                                                                      -
                                                                                      348 
                                                                                      -
                                                                                      349  const std::mt19937 * get_rengine() const;
                                                                                      -
                                                                                      350 
                                                                                      -
                                                                                      351  Counters<Array_Type,Data_Counter_Type> * get_counters();
                                                                                      -
                                                                                      352  Rules<Array_Type,Data_Rule_Type> * get_rules();
                                                                                      -
                                                                                      353  Rules<Array_Type,Data_Rule_Dyn_Type> * get_rules_dyn();
                                                                                      -
                                                                                      354  Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> * get_support_fun();
                                                                                      +
                                                                                      240  double likelihood(
                                                                                      +
                                                                                      241  const std::vector<double> & params,
                                                                                      +
                                                                                      242  const size_t & i,
                                                                                      +
                                                                                      243  bool as_log = false,
                                                                                      +
                                                                                      244  BARRY_NCORES_ARG(=2)
                                                                                      +
                                                                                      245  );
                                                                                      +
                                                                                      246 
                                                                                      +
                                                                                      247  double likelihood(
                                                                                      +
                                                                                      248  const std::vector<double> & params,
                                                                                      +
                                                                                      249  const Array_Type & Array_,
                                                                                      +
                                                                                      250  int i = -1,
                                                                                      +
                                                                                      251  bool as_log = false,
                                                                                      +
                                                                                      252  BARRY_NCORES_ARG(=2)
                                                                                      +
                                                                                      253  );
                                                                                      +
                                                                                      254 
                                                                                      +
                                                                                      255  double likelihood(
                                                                                      +
                                                                                      256  const std::vector<double> & params,
                                                                                      +
                                                                                      257  const std::vector<double> & target_,
                                                                                      +
                                                                                      258  const size_t & i,
                                                                                      +
                                                                                      259  bool as_log = false,
                                                                                      +
                                                                                      260  BARRY_NCORES_ARG(=2)
                                                                                      +
                                                                                      261  );
                                                                                      +
                                                                                      262 
                                                                                      +
                                                                                      263  double likelihood(
                                                                                      +
                                                                                      264  const std::vector<double> & params,
                                                                                      +
                                                                                      265  const double * target_,
                                                                                      +
                                                                                      266  const size_t & i,
                                                                                      +
                                                                                      267  bool as_log = false,
                                                                                      +
                                                                                      268  BARRY_NCORES_ARG(=2)
                                                                                      +
                                                                                      269  );
                                                                                      +
                                                                                      270 
                                                                                      +
                                                                                      271  double likelihood_total(
                                                                                      +
                                                                                      272  const std::vector<double> & params,
                                                                                      +
                                                                                      273  bool as_log = false,
                                                                                      +
                                                                                      274  BARRY_NCORES_ARG(=2)
                                                                                      +
                                                                                      275  );
                                                                                      +
                                                                                      277 
                                                                                      +
                                                                                      287  double get_norm_const(
                                                                                      +
                                                                                      288  const std::vector< double > & params,
                                                                                      +
                                                                                      289  const size_t & i,
                                                                                      +
                                                                                      290  bool as_log = false
                                                                                      +
                                                                                      291  );
                                                                                      +
                                                                                      292 
                                                                                      +
                                                                                      293  const std::vector< Array_Type > * get_pset(
                                                                                      +
                                                                                      294  const size_t & i
                                                                                      +
                                                                                      295  );
                                                                                      +
                                                                                      296 
                                                                                      +
                                                                                      297  const std::vector< double > * get_pset_stats(
                                                                                      +
                                                                                      298  const size_t & i
                                                                                      +
                                                                                      299  );
                                                                                      +
                                                                                      301 
                                                                                      +
                                                                                      302  void print_stats(size_t i) const;
                                                                                      +
                                                                                      303 
                                                                                      +
                                                                                      307  virtual void print() const;
                                                                                      +
                                                                                      308 
                                                                                      +
                                                                                      309  Array_Type sample(const Array_Type & Array_, const std::vector<double> & params = {});
                                                                                      +
                                                                                      310  Array_Type sample(const size_t & i, const std::vector<double> & params);
                                                                                      +
                                                                                      311 
                                                                                      +
                                                                                      325  double conditional_prob(
                                                                                      +
                                                                                      326  const Array_Type & Array_,
                                                                                      +
                                                                                      327  const std::vector< double > & params,
                                                                                      +
                                                                                      328  size_t i,
                                                                                      +
                                                                                      329  size_t j
                                                                                      +
                                                                                      330  );
                                                                                      +
                                                                                      331 
                                                                                      +
                                                                                      345  size_t size() const noexcept;
                                                                                      +
                                                                                      346  size_t size_unique() const noexcept;
                                                                                      +
                                                                                      347  size_t nterms() const noexcept;
                                                                                      +
                                                                                      348  size_t nrules() const noexcept;
                                                                                      +
                                                                                      349  size_t nrules_dyn() const noexcept;
                                                                                      +
                                                                                      350  size_t support_size() const noexcept;
                                                                                      +
                                                                                      351  std::vector< std::string > colnames() const;
                                                                                      +
                                                                                      353 
                                                                                      +
                                                                                      354  const std::mt19937 * get_rengine() const;
                                                                                      355 
                                                                                      -
                                                                                      367  std::vector< std::vector< double > > * get_stats_target();
                                                                                      -
                                                                                      368  std::vector< std::vector< double > > * get_stats_support();
                                                                                      -
                                                                                      369  std::vector< size_t > * get_arrays2support();
                                                                                      -
                                                                                      370  std::vector< std::vector< Array_Type > > * get_pset_arrays();
                                                                                      -
                                                                                      371  std::vector< std::vector<double> > * get_pset_stats();
                                                                                      -
                                                                                      372  std::vector< std::vector<double> > * get_pset_probs();
                                                                                      -
                                                                                      374 
                                                                                      -
                                                                                      385  void set_transform_model(
                                                                                      -
                                                                                      386  std::function<std::vector<double>(double*,size_t)> fun,
                                                                                      -
                                                                                      387  std::vector< std::string > names
                                                                                      -
                                                                                      388  );
                                                                                      -
                                                                                      389  std::vector<double> transform_model(
                                                                                      -
                                                                                      390  double * data,
                                                                                      -
                                                                                      391  size_t k
                                                                                      -
                                                                                      392  );
                                                                                      -
                                                                                      394 
                                                                                      -
                                                                                      395 };
                                                                                      -
                                                                                      396 
                                                                                      -
                                                                                      397 
                                                                                      -
                                                                                      398 #endif
                                                                                      +
                                                                                      356  Counters<Array_Type,Data_Counter_Type> * get_counters();
                                                                                      +
                                                                                      357  Rules<Array_Type,Data_Rule_Type> * get_rules();
                                                                                      +
                                                                                      358  Rules<Array_Type,Data_Rule_Dyn_Type> * get_rules_dyn();
                                                                                      +
                                                                                      359  Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> * get_support_fun();
                                                                                      +
                                                                                      360 
                                                                                      +
                                                                                      372  std::vector< std::vector< double > > * get_stats_target();
                                                                                      +
                                                                                      373  std::vector< std::vector< double > > * get_stats_support();
                                                                                      +
                                                                                      374  std::vector< size_t > * get_arrays2support();
                                                                                      +
                                                                                      375  std::vector< std::vector< Array_Type > > * get_pset_arrays();
                                                                                      +
                                                                                      376  std::vector< std::vector<double> > * get_pset_stats();
                                                                                      +
                                                                                      377  std::vector< std::vector<double> > * get_pset_probs();
                                                                                      +
                                                                                      379 
                                                                                      +
                                                                                      390  void set_transform_model(
                                                                                      +
                                                                                      391  std::function<std::vector<double>(double*,size_t)> fun,
                                                                                      +
                                                                                      392  std::vector< std::string > names
                                                                                      +
                                                                                      393  );
                                                                                      +
                                                                                      394  std::vector<double> transform_model(
                                                                                      +
                                                                                      395  double * data,
                                                                                      +
                                                                                      396  size_t k
                                                                                      +
                                                                                      397  );
                                                                                      +
                                                                                      399 
                                                                                      +
                                                                                      400 };
                                                                                      +
                                                                                      401 
                                                                                      +
                                                                                      402 
                                                                                      +
                                                                                      403 #endif
                                                                                      +
                                                                                      BARRY_NCORES_ARG
                                                                                      #define BARRY_NCORES_ARG(default)
                                                                                      Definition: barry-macros.hpp:15
                                                                                      BArray
                                                                                      Baseline class for binary arrays.
                                                                                      Definition: barray-bones.hpp:28
                                                                                      Counter
                                                                                      A counter function based on change statistics.
                                                                                      Definition: counters-bones.hpp:35
                                                                                      Counters
                                                                                      Vector of counters.
                                                                                      Definition: counters-bones.hpp:108
                                                                                      Model
                                                                                      General framework for discrete exponential models. This class allows generating discrete exponential ...
                                                                                      Definition: model-bones.hpp:34
                                                                                      -
                                                                                      Model::size_unique
                                                                                      size_t size_unique() const noexcept
                                                                                      +
                                                                                      Model::size_unique
                                                                                      size_t size_unique() const noexcept
                                                                                      Definition: model-meat.hpp:1107
                                                                                      Model::transform_model_term_names
                                                                                      std::vector< std::string > transform_model_term_names
                                                                                      Definition: model-bones.hpp:125
                                                                                      +
                                                                                      Model::get_rengine
                                                                                      const std::mt19937 * get_rengine() const
                                                                                      Definition: model-meat.hpp:1454
                                                                                      Model::delete_rules
                                                                                      bool delete_rules
                                                                                      Definition: model-bones.hpp:104
                                                                                      -
                                                                                      Model::get_pset
                                                                                      const std::vector< Array_Type > * get_pset(const size_t &i)
                                                                                      -
                                                                                      Model::get_support_fun
                                                                                      Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > * get_support_fun()
                                                                                      Model::rules_dyn
                                                                                      Rules< Array_Type, Data_Rule_Dyn_Type > * rules_dyn
                                                                                      Definition: model-bones.hpp:93
                                                                                      Model::rules
                                                                                      Rules< Array_Type, Data_Rule_Type > * rules
                                                                                      Definition: model-bones.hpp:92
                                                                                      Model::counter_fun
                                                                                      StatsCounter< Array_Type, Data_Counter_Type > counter_fun
                                                                                      Definition: model-bones.hpp:95
                                                                                      -
                                                                                      Model::size
                                                                                      size_t size() const noexcept
                                                                                      -
                                                                                      Model::add_counter
                                                                                      void add_counter(Counter< Array_Type, Data_Counter_Type > &counter)
                                                                                      +
                                                                                      Model::size
                                                                                      size_t size() const noexcept
                                                                                      Definition: model-meat.hpp:1099
                                                                                      +
                                                                                      Model::add_counter
                                                                                      void add_counter(Counter< Array_Type, Data_Counter_Type > &counter)
                                                                                      Definition: model-meat.hpp:334
                                                                                      +
                                                                                      Model::get_counters
                                                                                      Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                      Definition: model-meat.hpp:1459
                                                                                      Model::stats_target
                                                                                      std::vector< std::vector< double > > stats_target
                                                                                      Target statistics of the model.
                                                                                      Definition: model-bones.hpp:64
                                                                                      -
                                                                                      Model::sample
                                                                                      Array_Type sample(const Array_Type &Array_, const std::vector< double > &params={})
                                                                                      -
                                                                                      Model::add_rule_dyn
                                                                                      void add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > &rule)
                                                                                      -
                                                                                      Model::get_pset_probs
                                                                                      std::vector< std::vector< double > > * get_pset_probs()
                                                                                      +
                                                                                      Model::get_pset_probs
                                                                                      std::vector< std::vector< double > > * get_pset_probs()
                                                                                      Definition: model-meat.hpp:1508
                                                                                      +
                                                                                      Model::sample
                                                                                      Array_Type sample(const Array_Type &Array_, const std::vector< double > &params={})
                                                                                      Definition: model-meat.hpp:1252
                                                                                      +
                                                                                      Model::get_stats_support
                                                                                      std::vector< std::vector< double > > * get_stats_support()
                                                                                      Definition: model-meat.hpp:1486
                                                                                      +
                                                                                      Model::add_rule_dyn
                                                                                      void add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > &rule)
                                                                                      Definition: model-meat.hpp:417
                                                                                      Model::stats_support
                                                                                      std::vector< std::vector< double > > stats_support
                                                                                      Sufficient statistics of the model (support)
                                                                                      Definition: model-bones.hpp:62
                                                                                      -
                                                                                      Model::store_psets
                                                                                      void store_psets() noexcept
                                                                                      -
                                                                                      Model::conditional_prob
                                                                                      double conditional_prob(const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)
                                                                                      Conditional probability ("Gibbs sampler")
                                                                                      -
                                                                                      Model::get_pset_arrays
                                                                                      std::vector< std::vector< Array_Type > > * get_pset_arrays()
                                                                                      -
                                                                                      Model::get_rules
                                                                                      Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                      -
                                                                                      Model::operator=
                                                                                      Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & operator=(const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
                                                                                      Definition: model-meat.hpp:256
                                                                                      +
                                                                                      Model::store_psets
                                                                                      void store_psets() noexcept
                                                                                      Definition: model-meat.hpp:319
                                                                                      +
                                                                                      Model::conditional_prob
                                                                                      double conditional_prob(const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)
                                                                                      Conditional probability ("Gibbs sampler")
                                                                                      Definition: model-meat.hpp:1421
                                                                                      +
                                                                                      Model::likelihood_total
                                                                                      double likelihood_total(const std::vector< double > &params, bool as_log=false,)
                                                                                      Definition: model-meat.hpp:874
                                                                                      +
                                                                                      Model::get_pset_stats
                                                                                      std::vector< std::vector< double > > * get_pset_stats()
                                                                                      Statistics of the support(s)
                                                                                      Definition: model-meat.hpp:1503
                                                                                      +
                                                                                      Model::operator=
                                                                                      Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & operator=(const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
                                                                                      Definition: model-meat.hpp:269
                                                                                      +
                                                                                      Model::get_stats_target
                                                                                      std::vector< std::vector< double > > * get_stats_target()
                                                                                      Raw pointers to the support and target statistics.
                                                                                      Definition: model-meat.hpp:1480
                                                                                      Model::delete_rengine
                                                                                      bool delete_rengine
                                                                                      Definition: model-bones.hpp:43
                                                                                      +
                                                                                      Model::get_pset_arrays
                                                                                      std::vector< std::vector< Array_Type > > * get_pset_arrays()
                                                                                      Definition: model-meat.hpp:1498
                                                                                      +
                                                                                      Model::likelihood
                                                                                      double likelihood(const std::vector< double > &params, const size_t &i, bool as_log=false,)
                                                                                      Definition: model-meat.hpp:594
                                                                                      Model::~Model
                                                                                      virtual ~Model()
                                                                                      Definition: model-bones.hpp:159
                                                                                      -
                                                                                      Model::gen_key
                                                                                      std::vector< double > gen_key(const Array_Type &Array_)
                                                                                      +
                                                                                      Model::get_support_fun
                                                                                      Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > * get_support_fun()
                                                                                      Definition: model-meat.hpp:1475
                                                                                      +
                                                                                      Model::gen_key
                                                                                      std::vector< double > gen_key(const Array_Type &Array_)
                                                                                      Definition: model-meat.hpp:327
                                                                                      Model::arrays2support
                                                                                      std::vector< size_t > arrays2support
                                                                                      Definition: model-bones.hpp:65
                                                                                      -
                                                                                      Model::add_array
                                                                                      size_t add_array(const Array_Type &Array_, bool force_new=false)
                                                                                      Adds an array to the support of not already included.
                                                                                      -
                                                                                      Model::add_hasher
                                                                                      void add_hasher(Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)
                                                                                      -
                                                                                      Model::colnames
                                                                                      std::vector< std::string > colnames() const
                                                                                      -
                                                                                      Model::get_arrays2support
                                                                                      std::vector< size_t > * get_arrays2support()
                                                                                      -
                                                                                      Model::set_rules
                                                                                      void set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)
                                                                                      +
                                                                                      Model::add_array
                                                                                      size_t add_array(const Array_Type &Array_, bool force_new=false)
                                                                                      Adds an array to the support of not already included.
                                                                                      Definition: model-meat.hpp:458
                                                                                      +
                                                                                      Model::add_hasher
                                                                                      void add_hasher(Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)
                                                                                      Definition: model-meat.hpp:378
                                                                                      +
                                                                                      Model::colnames
                                                                                      std::vector< std::string > colnames() const
                                                                                      Definition: model-meat.hpp:1156
                                                                                      +
                                                                                      Model::set_rules
                                                                                      void set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)
                                                                                      Definition: model-meat.hpp:399
                                                                                      Model::pset_stats
                                                                                      std::vector< std::vector< double > > pset_stats
                                                                                      Statistics of the support(s)
                                                                                      Definition: model-bones.hpp:82
                                                                                      -
                                                                                      Model::nrules
                                                                                      size_t nrules() const noexcept
                                                                                      -
                                                                                      Model::get_stats_target
                                                                                      std::vector< std::vector< double > > * get_stats_target()
                                                                                      Raw pointers to the support and target statistics.
                                                                                      +
                                                                                      Model::nrules
                                                                                      size_t nrules() const noexcept
                                                                                      Definition: model-meat.hpp:1127
                                                                                      Model::stats_support_n_arrays
                                                                                      std::vector< size_t > stats_support_n_arrays
                                                                                      Number of arrays included per support.
                                                                                      Definition: model-bones.hpp:63
                                                                                      -
                                                                                      Model::print_stats
                                                                                      void print_stats(size_t i) const
                                                                                      -
                                                                                      Model::nterms
                                                                                      size_t nterms() const noexcept
                                                                                      +
                                                                                      Model::print_stats
                                                                                      void print_stats(size_t i) const
                                                                                      Definition: model-meat.hpp:1008
                                                                                      +
                                                                                      Model::nterms
                                                                                      size_t nterms() const noexcept
                                                                                      Definition: model-meat.hpp:1116
                                                                                      Model::with_pset
                                                                                      bool with_pset
                                                                                      Definition: model-bones.hpp:80
                                                                                      -
                                                                                      Model::likelihood_total
                                                                                      double likelihood_total(const std::vector< double > &params, bool as_log=false)
                                                                                      +
                                                                                      Model::get_rules
                                                                                      Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                      Definition: model-meat.hpp:1464
                                                                                      Model::delete_rules_dyn
                                                                                      bool delete_rules_dyn
                                                                                      Definition: model-bones.hpp:105
                                                                                      Model::delete_counters
                                                                                      bool delete_counters
                                                                                      Definition: model-bones.hpp:103
                                                                                      -
                                                                                      Model::set_counters
                                                                                      void set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)
                                                                                      -
                                                                                      Model::support_size
                                                                                      size_t support_size() const noexcept
                                                                                      -
                                                                                      Model::nrules_dyn
                                                                                      size_t nrules_dyn() const noexcept
                                                                                      +
                                                                                      Model::set_counters
                                                                                      void set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)
                                                                                      Definition: model-meat.hpp:360
                                                                                      +
                                                                                      Model::support_size
                                                                                      size_t support_size() const noexcept
                                                                                      Definition: model-meat.hpp:1143
                                                                                      +
                                                                                      Model::nrules_dyn
                                                                                      size_t nrules_dyn() const noexcept
                                                                                      Definition: model-meat.hpp:1135
                                                                                      Model::params_last
                                                                                      std::vector< std::vector< double > > params_last
                                                                                      Vector of the previously used parameters.
                                                                                      Definition: model-bones.hpp:99
                                                                                      -
                                                                                      Model::print
                                                                                      virtual void print() const
                                                                                      Prints information about the model.
                                                                                      Definition: model-meat.hpp:980
                                                                                      +
                                                                                      Model::print
                                                                                      virtual void print() const
                                                                                      Prints information about the model.
                                                                                      Definition: model-meat.hpp:1038
                                                                                      Model::transform_model
                                                                                      std::vector< double > transform_model(double *data, size_t k)
                                                                                      -
                                                                                      Model::get_pset_stats
                                                                                      std::vector< std::vector< double > > * get_pset_stats()
                                                                                      Statistics of the support(s)
                                                                                      Model::rengine
                                                                                      std::mt19937 * rengine
                                                                                      Definition: model-bones.hpp:42
                                                                                      Model::support_fun
                                                                                      Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > support_fun
                                                                                      Definition: model-bones.hpp:94
                                                                                      -
                                                                                      Model::set_rules_dyn
                                                                                      void set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
                                                                                      +
                                                                                      Model::set_rules_dyn
                                                                                      void set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
                                                                                      Definition: model-meat.hpp:441
                                                                                      Model::pset_arrays
                                                                                      std::vector< std::vector< Array_Type > > pset_arrays
                                                                                      Arrays of the support(s)
                                                                                      Definition: model-bones.hpp:81
                                                                                      Model::transform_model_fun
                                                                                      std::function< std::vector< double >double *, size_t k)> transform_model_fun
                                                                                      Transformation of the model.
                                                                                      Definition: model-bones.hpp:123
                                                                                      -
                                                                                      Model::get_counters
                                                                                      Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                      -
                                                                                      Model::get_rengine
                                                                                      const std::mt19937 * get_rengine() const
                                                                                      +
                                                                                      Model::get_arrays2support
                                                                                      std::vector< size_t > * get_arrays2support()
                                                                                      Definition: model-meat.hpp:1492
                                                                                      Model::keys2support
                                                                                      MapVec_type< double, size_t > keys2support
                                                                                      Map of types of arrays to support sets.
                                                                                      Definition: model-bones.hpp:72
                                                                                      - -
                                                                                      Model::likelihood
                                                                                      double likelihood(const std::vector< double > &params, const size_t &i, bool as_log=false)
                                                                                      +
                                                                                      Model::normalizing_constants
                                                                                      std::vector< double > normalizing_constants
                                                                                      Definition: model-bones.hpp:100
                                                                                      Model::first_calc_done
                                                                                      std::vector< bool > first_calc_done
                                                                                      Definition: model-bones.hpp:101
                                                                                      -
                                                                                      Model::get_stats_support
                                                                                      std::vector< std::vector< double > > * get_stats_support()
                                                                                      -
                                                                                      Model::set_transform_model
                                                                                      void set_transform_model(std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)
                                                                                      Set the transform_model_fun object.
                                                                                      +
                                                                                      Model::set_transform_model
                                                                                      void set_transform_model(std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)
                                                                                      Set the transform_model_fun object.
                                                                                      Definition: model-meat.hpp:1513
                                                                                      Model::counters
                                                                                      Counters< Array_Type, Data_Counter_Type > * counters
                                                                                      Definition: model-bones.hpp:91
                                                                                      -
                                                                                      Model::get_norm_const
                                                                                      double get_norm_const(const std::vector< double > &params, const size_t &i, bool as_log=false)
                                                                                      +
                                                                                      Model::get_pset
                                                                                      const std::vector< Array_Type > * get_pset(const size_t &i)
                                                                                      Definition: model-meat.hpp:983
                                                                                      +
                                                                                      Model::get_norm_const
                                                                                      double get_norm_const(const std::vector< double > &params, const size_t &i, bool as_log=false)
                                                                                      Definition: model-meat.hpp:946
                                                                                      Model::pset_probs
                                                                                      std::vector< std::vector< double > > pset_probs
                                                                                      Probabilities of the support(s)
                                                                                      Definition: model-bones.hpp:83
                                                                                      Model::set_rengine
                                                                                      void set_rengine(std::mt19937 *rengine_, bool delete_=false)
                                                                                      Definition: model-bones.hpp:129
                                                                                      -
                                                                                      Model::add_rule
                                                                                      void add_rule(Rule< Array_Type, Data_Rule_Type > &rule)
                                                                                      +
                                                                                      Model::add_rule
                                                                                      void add_rule(Rule< Array_Type, Data_Rule_Type > &rule)
                                                                                      Definition: model-meat.hpp:389
                                                                                      Model::set_seed
                                                                                      void set_seed(size_t s)
                                                                                      Definition: model-bones.hpp:139
                                                                                      -
                                                                                      Model::get_rules_dyn
                                                                                      Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                      +
                                                                                      Model::get_rules_dyn
                                                                                      Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                      Definition: model-meat.hpp:1469
                                                                                      Rule
                                                                                      Rule for determining if a cell should be included in a sequence.
                                                                                      Definition: rules-bones.hpp:20
                                                                                      Rules
                                                                                      Vector of objects of class Rule.
                                                                                      Definition: rules-bones.hpp:71
                                                                                      StatsCounter
                                                                                      Count stats for a single Array.
                                                                                      Definition: statscounter-bones.hpp:14
                                                                                      @@ -394,18 +400,12 @@
                                                                                      data
                                                                                      Data_Type &&counter_ data(std::move(counter_.data))
                                                                                      init_fun_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > init_fun_
                                                                                      Definition: counters-meat.hpp:180
                                                                                      fun_
                                                                                      Data_Type fun_
                                                                                      Definition: counters-meat.hpp:271
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84
                                                                                      counter
                                                                                      Data_Type counter
                                                                                      Definition: counters-meat.hpp:171
                                                                                      -
                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      noexcept
                                                                                      Data_Type &&counter_ noexcept
                                                                                      Definition: counters-meat.hpp:27
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                                                                                      rules_
                                                                                      Data_Rule_Type * rules_
                                                                                      Definition: model-meat.hpp:380
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                                                                                      force_new
                                                                                      bool force_new
                                                                                      Definition: model-meat.hpp:437
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                                                                                      Data_Counter_Type
                                                                                      template Data_Counter_Type
                                                                                      Definition: model-meat.hpp:1406
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                                                                                      params
                                                                                      const std::vector< double > & params
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                                                                                      k
                                                                                      size_t k
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                                                                                      counters_
                                                                                      Data_Counter_Type * counters_
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                                                                                      Data_Rule_Type
                                                                                      template Data_Rule_Type
                                                                                      Definition: model-meat.hpp:1406
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                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
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                                                                                      counters_
                                                                                      Data_Type * counters_
                                                                                      Definition: statscounter-meat.hpp:54
                                                                                      MapVec_type
                                                                                      std::unordered_map< std::vector< Ta >, Tb, vecHasher< Ta > > MapVec_type
                                                                                      Definition: typedefs.hpp:128
                                                                                      Rule_fun_type
                                                                                      std::function< bool(const Array_Type &, size_t, size_t, Data_Type &)> Rule_fun_type
                                                                                      Definition: typedefs.hpp:190
                                                                                      Hasher_fun_type
                                                                                      std::function< std::vector< double >(const Array_Type &, Data_Type *)> Hasher_fun_type
                                                                                      Hasher function used by the counter.
                                                                                      Definition: typedefs.hpp:200
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                                                                                      -Macros | -Functions | -Variables
                                                                                      +Functions
                                                                                      model-meat.hpp File Reference
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                                                                                      Go to the source code of this file.

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                                                                                      -Macros

                                                                                      #define MODEL_TYPE()
                                                                                       
                                                                                      #define MODEL_TEMPLATE_ARGS()
                                                                                       
                                                                                      #define MODEL_TEMPLATE(a, b)    template MODEL_TEMPLATE_ARGS() inline a MODEL_TYPE()::b
                                                                                       
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                                                                                      Functions

                                                                                      double update_normalizing_constant (const double *params, const double *support, size_t k, size_t n)
                                                                                      double update_normalizing_constant (const double *params, const double *support, size_t k, size_t n)
                                                                                       
                                                                                      double likelihood_ (const double *stats_target, const std::vector< double > &params, const double normalizing_constant, size_t n_params, bool log_=false)
                                                                                      double likelihood_ (const double *stats_target, const std::vector< double > &params, const double normalizing_constant, size_t n_params, bool log_=false)
                                                                                       
                                                                                       MODEL_TEMPLATE (void, store_psets)() noexcept
                                                                                       
                                                                                       MODEL_TEMPLATE (std::vector< double >, gen_key)(const Array_Type &Array_)
                                                                                       
                                                                                       MODEL_TEMPLATE (void, add_counter)(Counter< Array_Type
                                                                                       
                                                                                       MODEL_TEMPLATE (void, set_counters)(Counters< Array_Type
                                                                                       
                                                                                      support_fun set_counters (counters)
                                                                                       
                                                                                       MODEL_TEMPLATE (void, add_hasher)(Hasher_fun_type< Array_Type
                                                                                       
                                                                                       MODEL_TEMPLATE (void, add_rule)(Rule< Array_Type
                                                                                       
                                                                                       MODEL_TEMPLATE (void, set_rules)(Rules< Array_Type
                                                                                       
                                                                                      support_fun set_rules (rules)
                                                                                       
                                                                                       MODEL_TEMPLATE (void, add_rule_dyn)(Rule< Array_Type
                                                                                       
                                                                                       MODEL_TEMPLATE (void, set_rules_dyn)(Rules< Array_Type
                                                                                       
                                                                                      support_fun set_rules_dyn (rules_dyn)
                                                                                       
                                                                                       MODEL_TEMPLATE (size_t, add_array)(const Array_Type &Array_
                                                                                       
                                                                                       if (transform_model_fun) = transform_model_fun(&tmp_counts[0u], tmp_counts.size())
                                                                                       
                                                                                      else stats_target push_back (counter_fun.count_all())
                                                                                       
                                                                                       if (force_new|(locator==keys2support.end()))
                                                                                       
                                                                                      arrays2support push_back (locator->second)
                                                                                       
                                                                                      return arrays2support size () - 1u
                                                                                       
                                                                                       MODEL_TEMPLATE (double, likelihood)(const std
                                                                                       
                                                                                       MODEL_TEMPLATE (double, likelihood_total)(const std
                                                                                       
                                                                                       MODEL_TEMPLATE (double, get_norm_const)(const std
                                                                                       
                                                                                       MODEL_TEMPLATE (const std::vector< Array_Type > *, get_pset)(const size_t &i)
                                                                                       
                                                                                       MODEL_TEMPLATE (const std::vector< double > *, get_pset_stats)(const size_t &i)
                                                                                       
                                                                                       MODEL_TEMPLATE (void, print_stats)(size_t i) const
                                                                                       
                                                                                       MODEL_TEMPLATE (size_t, size)() const noexcept
                                                                                       
                                                                                       MODEL_TEMPLATE (size_t, size_unique)() const noexcept
                                                                                       
                                                                                       MODEL_TEMPLATE (size_t, nterms)() const noexcept
                                                                                       
                                                                                       MODEL_TEMPLATE (size_t, nrules)() const noexcept
                                                                                       
                                                                                       MODEL_TEMPLATE (size_t, nrules_dyn)() const noexcept
                                                                                       
                                                                                       MODEL_TEMPLATE (size_t, support_size)() const noexcept
                                                                                       
                                                                                       MODEL_TEMPLATE (std::vector< std::string >, colnames)() const
                                                                                       
                                                                                       MODEL_TEMPLATE (Array_Type, sample)(const Array_Type &Array_
                                                                                       
                                                                                       if (locator==keys2support.end())
                                                                                       
                                                                                      std::uniform_real_distribution urand (0, 1)
                                                                                       
                                                                                       if ((probs.size() > 0u) &&(vec_equal_approx(params, params_last[a])))
                                                                                       
                                                                                      std::vector< double > temp_stats (params.size())
                                                                                       
                                                                                       for (size_t array=0u;array< probs.size();++array)
                                                                                       
                                                                                       MODEL_TEMPLATE (double, conditional_prob)(const Array_Type &Array_
                                                                                       
                                                                                      A insert_cell (i, j, A.default_val(), true, false)
                                                                                       
                                                                                      tmp_counts reserve (counters->size())
                                                                                       
                                                                                       for (size_t ii=0u;ii< counters->size();++ii) tmp_counts.push_back(counters -> operator[](ii).count(A, i, j))
                                                                                       
                                                                                       return (1.0+std::exp(-vec_inner_prod< double >(&params[0u], &tmp_counts[0u], params.size())))
                                                                                       
                                                                                       MODEL_TEMPLATE (const std::mt19937 *, get_rengine)() const
                                                                                       
                                                                                       MODEL_TEMPLATE (std::vector< std::vector< double > > *, get_stats_target)()
                                                                                       
                                                                                       MODEL_TEMPLATE (std::vector< std::vector< double > > *, get_stats_support)()
                                                                                       
                                                                                       MODEL_TEMPLATE (std::vector< size_t > *, get_arrays2support)()
                                                                                       
                                                                                       MODEL_TEMPLATE (std::vector< std::vector< Array_Type > > *, get_pset_arrays)()
                                                                                       
                                                                                       MODEL_TEMPLATE (std::vector< std::vector< double > > *, get_pset_stats)()
                                                                                       
                                                                                       MODEL_TEMPLATE (std::vector< std::vector< double > > *, get_pset_probs)()
                                                                                       
                                                                                       MODEL_TEMPLATE (void, set_transform_model)(std
                                                                                       
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                                                                                      -Variables

                                                                                      Data_Counter_Type & counter
                                                                                       
                                                                                       return
                                                                                       
                                                                                      Data_Counter_Type count_fun_
                                                                                       
                                                                                      Data_Counter_Type Counter_fun_type< Array_Type, Data_Counter_Type > init_fun_
                                                                                       
                                                                                      Data_Counter_Type Counter_fun_type< Array_Type, Data_Counter_Type > Data_Counter_Type data_
                                                                                       
                                                                                      Data_Counter_Type * counters_
                                                                                       
                                                                                      Data_Counter_Type fun_
                                                                                       
                                                                                      Data_Rule_Type & rules
                                                                                       
                                                                                      Data_Rule_Type * rules_
                                                                                       
                                                                                      this delete_rules = false
                                                                                       
                                                                                      Data_Rule_Dyn_Type rule_fun_
                                                                                       
                                                                                      this rules_dyn = rules_
                                                                                       
                                                                                      this delete_rules_dyn = false
                                                                                       
                                                                                      bool force_new
                                                                                       
                                                                                      std::vector< double > key = counters->gen_hash(Array_)
                                                                                       
                                                                                      MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key)
                                                                                       
                                                                                       stats_support_n_arrays [locator->second]
                                                                                       
                                                                                      const std::vector< double > & params
                                                                                       
                                                                                      size_t i = locator->second
                                                                                       
                                                                                      size_t a = arrays2support[i]
                                                                                       
                                                                                      double r = urand(*rengine)
                                                                                       
                                                                                      double cumprob = 0.0
                                                                                       
                                                                                      size_t k = params.size()
                                                                                       
                                                                                      size_t j = 0u
                                                                                       
                                                                                      std::vector< double > & probs = pset_probs[a]
                                                                                       
                                                                                       else
                                                                                       
                                                                                      const std::vector< double > & stats = pset_stats[a]
                                                                                       
                                                                                      int i_matches = -1
                                                                                       
                                                                                      return this pset_arrays [a][j]
                                                                                       
                                                                                      std::vector< double > tmp_counts
                                                                                       
                                                                                      template Data_Counter_Type
                                                                                       
                                                                                      template Data_Rule_Type
                                                                                       
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                                                                                      Macro Definition Documentation

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                                                                                      ◆ MODEL_TEMPLATE

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                                                                                      )    template MODEL_TEMPLATE_ARGS() inline a MODEL_TYPE()::b
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                                                                                      ◆ MODEL_TEMPLATE_ARGS

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                                                                                      <typename Array_Type, typename Data_Counter_Type,\
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                                                                                      Definition: model-meat.hpp:1406
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                                                                                      Definition at line 128 of file model-meat.hpp.

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                                                                                      ◆ MODEL_TYPE

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                                                                                      Model<Array_Type,Data_Counter_Type,Data_Rule_Type,\
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                                                                                      Model
                                                                                      General framework for discrete exponential models. This class allows generating discrete exponential ...
                                                                                      Definition: model-bones.hpp:34
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                                                                                      Definition at line 125 of file model-meat.hpp.

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                                                                                      A insert_cell (i ,
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                                                                                      ◆ likelihood_()

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                                                                                      ◆ update_normalizing_constant()

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                                                                                      MODEL_TEMPLATE double update_normalizing_constant (const std::mt19937 * , const double * params,
                                                                                      get_rengine  
                                                                                      ) const
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                                                                                      ) const &
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                                                                                      MODEL_TEMPLATE (const std::vector< double > * , size_t k,
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                                                                                      ) const &
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                                                                                      MODEL_TEMPLATE (std::vector< std::string > ,
                                                                                      colnames  
                                                                                      ) const
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1091 of file model-meat.hpp.

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                                                                                      ◆ MODEL_TEMPLATE() [19/33]

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                                                                                      MODEL_TEMPLATE (std::vector< std::vector< Array_Type > > * ,
                                                                                      get_pset_arrays  
                                                                                      )
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1426 of file model-meat.hpp.

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                                                                                      ◆ MODEL_TEMPLATE() [20/33]

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                                                                                      MODEL_TEMPLATE (std::vector< std::vector< double > > * ,
                                                                                      get_pset_probs  
                                                                                      )
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1434 of file model-meat.hpp.

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                                                                                      ◆ MODEL_TEMPLATE() [21/33]

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                                                                                      MODEL_TEMPLATE (std::vector< std::vector< double > > * ,
                                                                                      get_pset_stats  
                                                                                      )
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1430 of file model-meat.hpp.

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                                                                                      ◆ MODEL_TEMPLATE() [22/33]

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                                                                                      MODEL_TEMPLATE (std::vector< std::vector< double > > * ,
                                                                                      get_stats_support  
                                                                                      )
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1416 of file model-meat.hpp.

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                                                                                      ◆ MODEL_TEMPLATE() [23/33]

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                                                                                      MODEL_TEMPLATE (std::vector< std::vector< double > > * ,
                                                                                      get_stats_target  
                                                                                      )
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1411 of file model-meat.hpp.

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                                                                                      ◆ MODEL_TEMPLATE() [24/33]

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                                                                                      MODEL_TEMPLATE (void ,
                                                                                      add_counter  
                                                                                      )
                                                                                      -
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                                                                                      -
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                                                                                      ◆ MODEL_TEMPLATE() [25/33]

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                                                                                      MODEL_TEMPLATE (void ,
                                                                                      add_hasher  
                                                                                      )
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                                                                                      -
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                                                                                      ◆ MODEL_TEMPLATE() [26/33]

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                                                                                      MODEL_TEMPLATE (void ,
                                                                                      add_rule  
                                                                                      )
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                                                                                      -
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                                                                                      ◆ MODEL_TEMPLATE() [27/33]

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                                                                                      MODEL_TEMPLATE (void ,
                                                                                      add_rule_dyn  
                                                                                      )
                                                                                      -
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                                                                                      -
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                                                                                      ◆ MODEL_TEMPLATE() [28/33]

                                                                                      - -
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                                                                                      MODEL_TEMPLATE (void ,
                                                                                      print_stats  
                                                                                      ) const
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 950 of file model-meat.hpp.

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                                                                                      ◆ MODEL_TEMPLATE() [29/33]

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                                                                                      MODEL_TEMPLATE (void ,
                                                                                      set_counters  
                                                                                      )
                                                                                      -
                                                                                      - -
                                                                                      -
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                                                                                      ◆ MODEL_TEMPLATE() [30/33]

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                                                                                      MODEL_TEMPLATE (void ,
                                                                                      set_rules  
                                                                                      )
                                                                                      -
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                                                                                      -
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                                                                                      ◆ MODEL_TEMPLATE() [31/33]

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                                                                                      MODEL_TEMPLATE (void ,
                                                                                      set_rules_dyn  
                                                                                      )
                                                                                      -
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                                                                                      -
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                                                                                      ◆ MODEL_TEMPLATE() [32/33]

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                                                                                      MODEL_TEMPLATE (void ,
                                                                                      set_transform_model  
                                                                                      )
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1438 of file model-meat.hpp.

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                                                                                      ◆ MODEL_TEMPLATE() [33/33]

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                                                                                      MODEL_TEMPLATE (void ,
                                                                                      store_psets  
                                                                                      )
                                                                                      -                                                                                       		-noexcept
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 305 of file model-meat.hpp.

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                                                                                      ◆ push_back() [1/2]

                                                                                      - -
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                                                                                      else stats_target push_back (counter_fun. count_all())
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                                                                                      -
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                                                                                      ◆ push_back() [2/2]

                                                                                      - -
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                                                                                      arrays2support push_back (locator-> second)
                                                                                      -
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                                                                                      -
                                                                                      - -

                                                                                      ◆ reserve()

                                                                                      - -
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                                                                                      tmp_counts reserve (counters-> size())
                                                                                      -
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                                                                                      -
                                                                                      - -

                                                                                      ◆ return()

                                                                                      - -
                                                                                      -
                                                                                      - - - - - - - - -
                                                                                      return (1.0+ std::exp-vec_inner_prod< double >(&params[0u], &tmp_counts[0u], params.size()))
                                                                                      -
                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ set_counters()

                                                                                      - -
                                                                                      -
                                                                                      - - - - - - - - -
                                                                                      counter_fun set_counters (counters )
                                                                                      -
                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ set_rules()

                                                                                      - -
                                                                                      -
                                                                                      - - - - - - - - -
                                                                                      support_fun set_rules (rules )
                                                                                      -
                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ set_rules_dyn()

                                                                                      - -
                                                                                      -
                                                                                      - - - - - - - - -
                                                                                      support_fun set_rules_dyn (rules_dyn )
                                                                                      -
                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ size()

                                                                                      - -
                                                                                      -
                                                                                      - - - - - - - -
                                                                                      return arrays2support size ()
                                                                                      -
                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ temp_stats()

                                                                                      - -
                                                                                      -
                                                                                      - - - - - - - - -
                                                                                      std::vector< double > temp_stats (params. size())
                                                                                      -
                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ update_normalizing_constant()

                                                                                      - -
                                                                                      -
                                                                                      - - - - - -
                                                                                      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
                                                                                      double update_normalizing_constant (const double * params,
                                                                                      const double * support,
                                                                                      size_t k,
                                                                                      size_t n 
                                                                                      )
                                                                                      -                                                                                       		-inline
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 9 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ urand()

                                                                                      - -
                                                                                      -
                                                                                      - - - - - - - - - - - - - - - - - - -
                                                                                      std::uniform_real_distribution urand (0 ,
                                                                                      1  
                                                                                      )
                                                                                      -
                                                                                      - -
                                                                                      -
                                                                                      -

                                                                                      Variable Documentation

                                                                                      - -

                                                                                      ◆ a

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      size_t a = arrays2support[i]
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1287 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ count_fun_

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      Data_Counter_Type count_fun_
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 327 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ counter

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      Data_Counter_Type& counter
                                                                                      -
                                                                                      -Initial value:
                                                                                      {
                                                                                      -
                                                                                      -
                                                                                      counters->add_counter(counter, Data_Counter_Type())
                                                                                      -
                                                                                      counter
                                                                                      Data_Counter_Type & counter
                                                                                      Definition: model-meat.hpp:320
                                                                                      - -
                                                                                      -

                                                                                      Definition at line 319 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ counters_

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      Data_Counter_Type* counters_
                                                                                      -
                                                                                      -Initial value:
                                                                                      {
                                                                                      -
                                                                                      -
                                                                                      if (delete_counters) {
                                                                                      -
                                                                                      delete counters;
                                                                                      -
                                                                                      delete_counters = false;
                                                                                      -
                                                                                      }
                                                                                      -
                                                                                      -
                                                                                      this->counters = counters_
                                                                                      -
                                                                                      counters_
                                                                                      Data_Counter_Type * counters_
                                                                                      Definition: model-meat.hpp:344
                                                                                      -
                                                                                      -

                                                                                      Definition at line 343 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ cumprob

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      double cumprob = 0.0
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1292 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ data_

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      Data_Rule_Dyn_Type Data_Rule_Dyn_Type data_
                                                                                      -
                                                                                      -Initial value:
                                                                                      {
                                                                                      -
                                                                                      -
                                                                                      counters->add_counter(
                                                                                      -
                                                                                      count_fun_,
                                                                                      -
                                                                                      init_fun_,
                                                                                      -
                                                                                      data_
                                                                                      -
                                                                                      )
                                                                                      -
                                                                                      count_fun_
                                                                                      Data_Counter_Type count_fun_
                                                                                      Definition: model-meat.hpp:327
                                                                                      -
                                                                                      init_fun_
                                                                                      Data_Counter_Type Counter_fun_type< Array_Type, Data_Counter_Type > init_fun_
                                                                                      Definition: model-meat.hpp:328
                                                                                      -
                                                                                      data_
                                                                                      Data_Counter_Type Counter_fun_type< Array_Type, Data_Counter_Type > Data_Counter_Type data_
                                                                                      Definition: model-meat.hpp:330
                                                                                      -
                                                                                      -

                                                                                      Definition at line 329 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ Data_Counter_Type

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      template Data_Counter_Type
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1406 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ Data_Rule_Type

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      template Data_Rule_Type
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1406 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ delete_rules

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      this delete_rules = false
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 386 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ delete_rules_dyn

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      this delete_rules_dyn = false
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 425 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ else

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      else
                                                                                      -
                                                                                      -Initial value:
                                                                                      {
                                                                                      -
                                                                                      -
                                                                                      probs.resize(pset_arrays[a].size())
                                                                                      -
                                                                                      a
                                                                                      size_t a
                                                                                      Definition: model-meat.hpp:1287
                                                                                      -
                                                                                      size
                                                                                      return arrays2support size() - 1u
                                                                                      -
                                                                                      probs
                                                                                      std::vector< double > & probs
                                                                                      Definition: model-meat.hpp:1298
                                                                                      -
                                                                                      pset_arrays
                                                                                      return this pset_arrays[a][j]
                                                                                      Definition: model-meat.hpp:1349
                                                                                      -
                                                                                      -

                                                                                      Definition at line 1309 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ force_new

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      bool force_new
                                                                                      -
                                                                                      -Initial value:
                                                                                      {
                                                                                      -
                                                                                      -
                                                                                      -
                                                                                      counter_fun.reset_array(&Array_)
                                                                                      -
                                                                                      -

                                                                                      Definition at line 436 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ fun_

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      Data_Counter_Type fun_
                                                                                      -
                                                                                      -Initial value:
                                                                                      {
                                                                                      -
                                                                                      -
                                                                                      counters->add_hash(fun_)
                                                                                      -
                                                                                      fun_
                                                                                      Data_Counter_Type fun_
                                                                                      Definition: model-meat.hpp:361
                                                                                      -
                                                                                      -

                                                                                      Definition at line 360 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ i

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      const std::vector< double > size_t i = locator->second
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1195 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ i_matches

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      int i_matches = -1
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1315 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ init_fun_

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      Data_Counter_Type Counter_fun_type<Array_Type,Data_Counter_Type> init_fun_
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 328 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ j

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      const std::vector< double > size_t size_t j = 0u
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1297 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ k

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      size_t k = params.size()
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1294 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ key

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      std::vector< double > key = counters->gen_hash(Array_)
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 455 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ locator

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key)
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 456 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ params

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      const std::vector< double > & params
                                                                                      -
                                                                                      -Initial value:
                                                                                      {
                                                                                      -
                                                                                      -
                                                                                      -
                                                                                      if (!this->with_pset)
                                                                                      -
                                                                                      throw std::logic_error("Sampling is only available when store_pset() is active.")
                                                                                      -
                                                                                      -

                                                                                      Definition at line 1188 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ probs

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      std::vector< double >& probs = pset_probs[a]
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1298 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ pset_arrays

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      return this pset_arrays[a][j]
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1349 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ r

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      double r = urand(*rengine)
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1291 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ return

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      return
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 323 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ rule_fun_

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      Data_Rule_Dyn_Type rule_fun_
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 404 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ rules

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      this rules
                                                                                      -
                                                                                      -Initial value:
                                                                                      {
                                                                                      -
                                                                                      -
                                                                                      rules->add_rule(rules, Data_Rule_Type())
                                                                                      -
                                                                                      rules
                                                                                      Data_Rule_Type & rules
                                                                                      Definition: model-meat.hpp:371
                                                                                      -
                                                                                      -

                                                                                      Definition at line 370 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ rules_

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      Data_Rule_Dyn_Type * rules_
                                                                                      -
                                                                                      -Initial value:
                                                                                      {
                                                                                      -
                                                                                      -
                                                                                      if (delete_rules)
                                                                                      -
                                                                                      delete rules
                                                                                      -
                                                                                      delete_rules
                                                                                      this delete_rules
                                                                                      Definition: model-meat.hpp:386
                                                                                      -
                                                                                      -

                                                                                      Definition at line 379 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ rules_dyn

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      this rules_dyn = rules_
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 424 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ stats

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      const std::vector< double >& stats = pset_stats[a]
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1313 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ stats_support_n_arrays

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      stats_support_n_arrays[locator->second]
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 560 of file model-meat.hpp.

                                                                                      - -
                                                                                      -
                                                                                      - -

                                                                                      ◆ tmp_counts

                                                                                      - -
                                                                                      -
                                                                                      - - - - -
                                                                                      std::vector< double > tmp_counts
                                                                                      -
                                                                                      - -

                                                                                      Definition at line 1368 of file model-meat.hpp.

                                                                                      +

                                                                                      Definition at line 9 of file model-meat.hpp.

                                                                                      @@ -2430,7 +230,7 @@

                                                                                      • include
                                                                                      • barry
                                                                                      • model-meat.hpp
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
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                                                                                      2 #define BARRY_MODEL_MEAT_HPP 1
                                                                                      3 
                                                                                      9 inline double update_normalizing_constant(
                                                                                      -
                                                                                      10  const double * params,
                                                                                      +
                                                                                      10  const double * params,
                                                                                      11  const double * support,
                                                                                      -
                                                                                      12  size_t k,
                                                                                      +
                                                                                      12  size_t k,
                                                                                      13  size_t n
                                                                                      14 )
                                                                                      15 {
                                                                                      -
                                                                                      16 
                                                                                      -
                                                                                      17  double res = 0.0;
                                                                                      -
                                                                                      18 
                                                                                      -
                                                                                      19  #ifdef __OPENMP
                                                                                      -
                                                                                      20  #pragma omp simd reduction(+:res)
                                                                                      -
                                                                                      21  #else
                                                                                      -
                                                                                      22  #ifdef __GNUC__
                                                                                      -
                                                                                      23  #ifndef __clang__
                                                                                      -
                                                                                      24  #pragma GCC ivdep
                                                                                      -
                                                                                      25  #endif
                                                                                      -
                                                                                      26  #endif
                                                                                      -
                                                                                      27  #endif
                                                                                      -
                                                                                      28  for (size_t i = 0u; i < n; ++i)
                                                                                      -
                                                                                      29  {
                                                                                      -
                                                                                      30 
                                                                                      -
                                                                                      31  double tmp = 0.0;
                                                                                      -
                                                                                      32  const double * support_n = support + i * k + 1u;
                                                                                      -
                                                                                      33 
                                                                                      -
                                                                                      34  for (size_t j = 0u; j < (k - 1u); ++j)
                                                                                      -
                                                                                      35  tmp += (*(support_n + j)) * (*(params + j));
                                                                                      -
                                                                                      36 
                                                                                      -
                                                                                      37  res += std::exp(tmp BARRY_SAFE_EXP) * (*(support + i * k));
                                                                                      -
                                                                                      38 
                                                                                      -
                                                                                      39  }
                                                                                      -
                                                                                      40 
                                                                                      -
                                                                                      41  #ifdef BARRY_DEBUG
                                                                                      -
                                                                                      42  if (std::isnan(res))
                                                                                      -
                                                                                      43  throw std::overflow_error(
                                                                                      -
                                                                                      44  std::string("NaN in update_normalizing_constant. ") +
                                                                                      -
                                                                                      45  std::string("res = ") + std::to_string(res) +
                                                                                      -
                                                                                      46  std::string(", k = ") + std::to_string(k) +
                                                                                      -
                                                                                      47  std::string(", n = ") + std::to_string(n)
                                                                                      -
                                                                                      48  );
                                                                                      -
                                                                                      49  if (std::isinf(res))
                                                                                      -
                                                                                      50  throw std::overflow_error(
                                                                                      -
                                                                                      51  std::string("Inf in update_normalizing_constant. ") +
                                                                                      -
                                                                                      52  std::string("res = ") + std::to_string(res) +
                                                                                      -
                                                                                      53  std::string(", k = ") + std::to_string(k) +
                                                                                      -
                                                                                      54  std::string(", n = ") + std::to_string(n)
                                                                                      -
                                                                                      55  );
                                                                                      -
                                                                                      56 
                                                                                      -
                                                                                      57  #endif
                                                                                      -
                                                                                      58 
                                                                                      -
                                                                                      59  return res;
                                                                                      -
                                                                                      60 
                                                                                      -
                                                                                      61 }
                                                                                      +
                                                                                      16  std::vector< double > resv(n);
                                                                                      +
                                                                                      17 
                                                                                      +
                                                                                      18  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      +
                                                                                      19  #pragma omp parallel for shared(resv)
                                                                                      +
                                                                                      20  #else
                                                                                      +
                                                                                      21  #ifdef __GNUC__
                                                                                      +
                                                                                      22  #ifndef __clang__
                                                                                      +
                                                                                      23  #pragma GCC ivdep
                                                                                      +
                                                                                      24  #endif
                                                                                      +
                                                                                      25  #endif
                                                                                      +
                                                                                      26  #endif
                                                                                      +
                                                                                      27  for (size_t i = 0u; i < n; ++i)
                                                                                      +
                                                                                      28  {
                                                                                      +
                                                                                      29 
                                                                                      +
                                                                                      30  double tmp = 0.0;
                                                                                      +
                                                                                      31  const double * support_n = support + i * k + 1u;
                                                                                      +
                                                                                      32 
                                                                                      +
                                                                                      33  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      +
                                                                                      34  #pragma omp simd reduction(+:tmp)
                                                                                      +
                                                                                      35  #else
                                                                                      +
                                                                                      36  #ifdef __GNUC__
                                                                                      +
                                                                                      37  #ifndef __clang__
                                                                                      +
                                                                                      38  #pragma GCC ivdep
                                                                                      +
                                                                                      39  #endif
                                                                                      +
                                                                                      40  #endif
                                                                                      +
                                                                                      41  #endif
                                                                                      +
                                                                                      42  for (size_t j = 0u; j < (k - 1u); ++j)
                                                                                      +
                                                                                      43  tmp += (*(support_n + j)) * (*(params + j));
                                                                                      +
                                                                                      44 
                                                                                      +
                                                                                      45  resv[i] = std::exp(tmp BARRY_SAFE_EXP) * (*(support + i * k));
                                                                                      +
                                                                                      46 
                                                                                      +
                                                                                      47  }
                                                                                      +
                                                                                      48 
                                                                                      +
                                                                                      49  // Accumulate resv to a double res
                                                                                      +
                                                                                      50  double res = 0.0;
                                                                                      +
                                                                                      51  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      +
                                                                                      52  #pragma omp parallel for simd reduction(+:res)
                                                                                      +
                                                                                      53  #else
                                                                                      +
                                                                                      54  #ifdef __GNUC__
                                                                                      +
                                                                                      55  #ifndef __clang__
                                                                                      +
                                                                                      56  #pragma GCC ivdep
                                                                                      +
                                                                                      57  #endif
                                                                                      +
                                                                                      58  #endif
                                                                                      +
                                                                                      59  #endif
                                                                                      +
                                                                                      60  for (size_t i = 0u; i < n; ++i)
                                                                                      +
                                                                                      61  res += resv[i];
                                                                                      62 
                                                                                      -
                                                                                      63 inline double likelihood_(
                                                                                      -
                                                                                      64  const double * stats_target,
                                                                                      -
                                                                                      65  const std::vector< double > & params,
                                                                                      -
                                                                                      66  const double normalizing_constant,
                                                                                      -
                                                                                      67  size_t n_params,
                                                                                      -
                                                                                      68  bool log_ = false
                                                                                      -
                                                                                      69 ) {
                                                                                      -
                                                                                      70 
                                                                                      -
                                                                                      71  if (n_params != params.size())
                                                                                      -
                                                                                      72  throw std::length_error("-stats_target- and -params- should have the same length.");
                                                                                      -
                                                                                      73 
                                                                                      -
                                                                                      74  double numerator = 0.0;
                                                                                      -
                                                                                      75 
                                                                                      -
                                                                                      76  // Computing the numerator
                                                                                      -
                                                                                      77  #ifdef __OPENMP
                                                                                      -
                                                                                      78  #pragma omp simd reduction(+:numerator)
                                                                                      -
                                                                                      79  #else
                                                                                      -
                                                                                      80  #ifdef __GNUC__
                                                                                      -
                                                                                      81  #ifndef __clang__
                                                                                      -
                                                                                      82  #pragma GCC ivdep
                                                                                      -
                                                                                      83  #endif
                                                                                      -
                                                                                      84  #endif
                                                                                      -
                                                                                      85  #endif
                                                                                      -
                                                                                      86  for (size_t j = 0u; j < params.size(); ++j)
                                                                                      -
                                                                                      87  numerator += *(stats_target + j) * params[j];
                                                                                      -
                                                                                      88 
                                                                                      -
                                                                                      89  if (!log_)
                                                                                      -
                                                                                      90  numerator = std::exp(numerator BARRY_SAFE_EXP);
                                                                                      -
                                                                                      91  else
                                                                                      -
                                                                                      92  return numerator BARRY_SAFE_EXP - std::log(normalizing_constant);
                                                                                      -
                                                                                      93 
                                                                                      -
                                                                                      94  double ans = numerator/normalizing_constant;
                                                                                      -
                                                                                      95 
                                                                                      -
                                                                                      96  #ifdef BARRY_DEBUG
                                                                                      -
                                                                                      97  if (std::isnan(ans))
                                                                                      -
                                                                                      98  throw std::overflow_error(
                                                                                      -
                                                                                      99  std::string("NaN in likelihood_. ") +
                                                                                      -
                                                                                      100  std::string("numerator = ") + std::to_string(numerator) +
                                                                                      -
                                                                                      101  std::string(", normalizing_constant = ") +
                                                                                      -
                                                                                      102  std::to_string(normalizing_constant)
                                                                                      -
                                                                                      103  );
                                                                                      -
                                                                                      104  if (std::isinf(ans))
                                                                                      -
                                                                                      105  throw std::overflow_error(
                                                                                      -
                                                                                      106  std::string("Inf in likelihood_. ") +
                                                                                      -
                                                                                      107  std::string("numerator = ") + std::to_string(numerator) +
                                                                                      -
                                                                                      108  std::string(", normalizing_constant = ") +
                                                                                      -
                                                                                      109  std::to_string(normalizing_constant)
                                                                                      -
                                                                                      110  );
                                                                                      -
                                                                                      111 
                                                                                      -
                                                                                      112  if (ans > 1.0)
                                                                                      -
                                                                                      113  throw std::overflow_error(
                                                                                      -
                                                                                      114  std::string("Likelihood > 1.0") +
                                                                                      -
                                                                                      115  std::string("numerator = ") + std::to_string(numerator) +
                                                                                      -
                                                                                      116  std::string(", normalizing_constant = ") +
                                                                                      -
                                                                                      117  std::to_string(normalizing_constant)
                                                                                      -
                                                                                      118  );
                                                                                      -
                                                                                      119  #endif
                                                                                      -
                                                                                      120 
                                                                                      -
                                                                                      121  return ans;
                                                                                      -
                                                                                      122 
                                                                                      -
                                                                                      123 }
                                                                                      -
                                                                                      124 
                                                                                      -
                                                                                      125 #define MODEL_TYPE() Model<Array_Type,Data_Counter_Type,Data_Rule_Type,\
                                                                                      -
                                                                                      126  Data_Rule_Dyn_Type>
                                                                                      -
                                                                                      127 
                                                                                      -
                                                                                      128 #define MODEL_TEMPLATE_ARGS() <typename Array_Type, typename Data_Counter_Type,\
                                                                                      -
                                                                                      129  typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      -
                                                                                      130 
                                                                                      -
                                                                                      131 #define MODEL_TEMPLATE(a,b) \
                                                                                      -
                                                                                      132  template MODEL_TEMPLATE_ARGS() inline a MODEL_TYPE()::b
                                                                                      +
                                                                                      63  #ifdef BARRY_DEBUG
                                                                                      +
                                                                                      64  if (std::isnan(res))
                                                                                      +
                                                                                      65  throw std::overflow_error(
                                                                                      +
                                                                                      66  std::string("NaN in update_normalizing_constant. ") +
                                                                                      +
                                                                                      67  std::string("res = ") + std::to_string(res) +
                                                                                      +
                                                                                      68  std::string(", k = ") + std::to_string(k) +
                                                                                      +
                                                                                      69  std::string(", n = ") + std::to_string(n)
                                                                                      +
                                                                                      70  );
                                                                                      +
                                                                                      71  if (std::isinf(res))
                                                                                      +
                                                                                      72  throw std::overflow_error(
                                                                                      +
                                                                                      73  std::string("Inf in update_normalizing_constant. ") +
                                                                                      +
                                                                                      74  std::string("res = ") + std::to_string(res) +
                                                                                      +
                                                                                      75  std::string(", k = ") + std::to_string(k) +
                                                                                      +
                                                                                      76  std::string(", n = ") + std::to_string(n)
                                                                                      +
                                                                                      77  );
                                                                                      +
                                                                                      78 
                                                                                      +
                                                                                      79  #endif
                                                                                      +
                                                                                      80 
                                                                                      +
                                                                                      81  return res;
                                                                                      +
                                                                                      82 
                                                                                      +
                                                                                      83 }
                                                                                      +
                                                                                      84 
                                                                                      +
                                                                                      85 inline double likelihood_(
                                                                                      +
                                                                                      86  const double * stats_target,
                                                                                      +
                                                                                      87  const std::vector< double > & params,
                                                                                      +
                                                                                      88  const double normalizing_constant,
                                                                                      +
                                                                                      89  size_t n_params,
                                                                                      +
                                                                                      90  bool log_ = false
                                                                                      +
                                                                                      91 ) {
                                                                                      +
                                                                                      92 
                                                                                      +
                                                                                      93  if (n_params != params.size())
                                                                                      +
                                                                                      94  throw std::length_error("-stats_target- and -params- should have the same length.");
                                                                                      +
                                                                                      95 
                                                                                      +
                                                                                      96  double numerator = 0.0;
                                                                                      +
                                                                                      97 
                                                                                      +
                                                                                      98  // Computing the numerator
                                                                                      +
                                                                                      99  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      +
                                                                                      100  #pragma omp simd reduction(+:numerator)
                                                                                      +
                                                                                      101  #else
                                                                                      +
                                                                                      102  #ifdef __GNUC__
                                                                                      +
                                                                                      103  #ifndef __clang__
                                                                                      +
                                                                                      104  #pragma GCC ivdep
                                                                                      +
                                                                                      105  #endif
                                                                                      +
                                                                                      106  #endif
                                                                                      +
                                                                                      107  #endif
                                                                                      +
                                                                                      108  for (size_t j = 0u; j < params.size(); ++j)
                                                                                      +
                                                                                      109  numerator += *(stats_target + j) * params[j];
                                                                                      +
                                                                                      110 
                                                                                      +
                                                                                      111  if (!log_)
                                                                                      +
                                                                                      112  numerator = std::exp(numerator BARRY_SAFE_EXP);
                                                                                      +
                                                                                      113  else
                                                                                      +
                                                                                      114  return numerator BARRY_SAFE_EXP - std::log(normalizing_constant);
                                                                                      +
                                                                                      115 
                                                                                      +
                                                                                      116  double ans = numerator/normalizing_constant;
                                                                                      +
                                                                                      117 
                                                                                      +
                                                                                      118  #ifdef BARRY_DEBUG
                                                                                      +
                                                                                      119  if (std::isnan(ans))
                                                                                      +
                                                                                      120  throw std::overflow_error(
                                                                                      +
                                                                                      121  std::string("NaN in likelihood_. ") +
                                                                                      +
                                                                                      122  std::string("numerator = ") + std::to_string(numerator) +
                                                                                      +
                                                                                      123  std::string(", normalizing_constant = ") +
                                                                                      +
                                                                                      124  std::to_string(normalizing_constant)
                                                                                      +
                                                                                      125  );
                                                                                      +
                                                                                      126  if (std::isinf(ans))
                                                                                      +
                                                                                      127  throw std::overflow_error(
                                                                                      +
                                                                                      128  std::string("Inf in likelihood_. ") +
                                                                                      +
                                                                                      129  std::string("numerator = ") + std::to_string(numerator) +
                                                                                      +
                                                                                      130  std::string(", normalizing_constant = ") +
                                                                                      +
                                                                                      131  std::to_string(normalizing_constant)
                                                                                      +
                                                                                      132  );
                                                                                      133 
                                                                                      -
                                                                                      134 template <
                                                                                      -
                                                                                      135  typename Array_Type,
                                                                                      -
                                                                                      136  typename Data_Counter_Type,
                                                                                      -
                                                                                      137  typename Data_Rule_Type,
                                                                                      -
                                                                                      138  typename Data_Rule_Dyn_Type
                                                                                      -
                                                                                      139  >
                                                                                      -
                                                                                      140 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model() :
                                                                                      -
                                                                                      141  stats_support(0u),
                                                                                      -
                                                                                      142  stats_support_n_arrays(0u),
                                                                                      -
                                                                                      143  stats_target(0u), arrays2support(0u),
                                                                                      -
                                                                                      144  keys2support(0u),
                                                                                      -
                                                                                      145  pset_arrays(0u), pset_stats(0u),
                                                                                      -
                                                                                      146  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                      -
                                                                                      147  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                      -
                                                                                      148  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                      -
                                                                                      149  support_fun(), counter_fun(), delete_counters(true),
                                                                                      -
                                                                                      150  delete_rules(true),
                                                                                      -
                                                                                      151  delete_rules_dyn(true),
                                                                                      -
                                                                                      152  transform_model_fun(nullptr),
                                                                                      -
                                                                                      153  transform_model_term_names(0u)
                                                                                      -
                                                                                      154 {
                                                                                      -
                                                                                      155 
                                                                                      -
                                                                                      156  // Counters are shared
                                                                                      -
                                                                                      157  support_fun.set_counters(counters);
                                                                                      -
                                                                                      158  counter_fun.set_counters(counters);
                                                                                      -
                                                                                      159 
                                                                                      -
                                                                                      160  // Rules are shared
                                                                                      -
                                                                                      161  support_fun.set_rules(rules);
                                                                                      -
                                                                                      162  support_fun.set_rules_dyn(rules_dyn);
                                                                                      -
                                                                                      163 
                                                                                      -
                                                                                      164  return;
                                                                                      -
                                                                                      165 
                                                                                      -
                                                                                      166 }
                                                                                      -
                                                                                      167 
                                                                                      -
                                                                                      168 template <
                                                                                      -
                                                                                      169  typename Array_Type,
                                                                                      -
                                                                                      170  typename Data_Counter_Type,
                                                                                      -
                                                                                      171  typename Data_Rule_Type,
                                                                                      -
                                                                                      172  typename Data_Rule_Dyn_Type
                                                                                      -
                                                                                      173  >
                                                                                      -
                                                                                      174 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model(
                                                                                      -
                                                                                      175  size_t size_
                                                                                      -
                                                                                      176  ) :
                                                                                      -
                                                                                      177  stats_support(0u),
                                                                                      -
                                                                                      178  stats_support_n_arrays(0u),
                                                                                      -
                                                                                      179  stats_target(0u), arrays2support(0u), keys2support(0u),
                                                                                      -
                                                                                      180  pset_arrays(0u), pset_stats(0u),
                                                                                      -
                                                                                      181  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                      -
                                                                                      182  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                      -
                                                                                      183  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                      -
                                                                                      184  support_fun(), counter_fun(), delete_counters(true),
                                                                                      -
                                                                                      185  delete_rules(true),
                                                                                      -
                                                                                      186  delete_rules_dyn(true),
                                                                                      -
                                                                                      187  transform_model_fun(nullptr),
                                                                                      -
                                                                                      188  transform_model_term_names(0u)
                                                                                      -
                                                                                      189 {
                                                                                      -
                                                                                      190 
                                                                                      -
                                                                                      191  stats_target.reserve(size_);
                                                                                      -
                                                                                      192  arrays2support.reserve(size_);
                                                                                      -
                                                                                      193 
                                                                                      -
                                                                                      194  // Counters are shared
                                                                                      -
                                                                                      195  support_fun.set_counters(counters);
                                                                                      -
                                                                                      196  counter_fun.set_counters(counters);
                                                                                      -
                                                                                      197 
                                                                                      -
                                                                                      198  // Rules are shared
                                                                                      -
                                                                                      199  support_fun.set_rules(rules);
                                                                                      -
                                                                                      200  support_fun.set_rules_dyn(rules_dyn);
                                                                                      -
                                                                                      201 
                                                                                      -
                                                                                      202  return;
                                                                                      +
                                                                                      134  if (ans > 1.0)
                                                                                      +
                                                                                      135  throw std::overflow_error(
                                                                                      +
                                                                                      136  std::string("Likelihood > 1.0") +
                                                                                      +
                                                                                      137  std::string("numerator = ") + std::to_string(numerator) +
                                                                                      +
                                                                                      138  std::string(", normalizing_constant = ") +
                                                                                      +
                                                                                      139  std::to_string(normalizing_constant)
                                                                                      +
                                                                                      140  );
                                                                                      +
                                                                                      141  #endif
                                                                                      +
                                                                                      142 
                                                                                      +
                                                                                      143  return ans;
                                                                                      +
                                                                                      144 
                                                                                      +
                                                                                      145 }
                                                                                      +
                                                                                      146 
                                                                                      +
                                                                                      147 template <
                                                                                      +
                                                                                      148  typename Array_Type,
                                                                                      +
                                                                                      149  typename Data_Counter_Type,
                                                                                      +
                                                                                      150  typename Data_Rule_Type,
                                                                                      +
                                                                                      151  typename Data_Rule_Dyn_Type
                                                                                      +
                                                                                      152  >
                                                                                      +
                                                                                      153 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model() :
                                                                                      +
                                                                                      154  stats_support(0u),
                                                                                      +
                                                                                      155  stats_support_n_arrays(0u),
                                                                                      +
                                                                                      156  stats_target(0u), arrays2support(0u),
                                                                                      +
                                                                                      157  keys2support(0u),
                                                                                      +
                                                                                      158  pset_arrays(0u), pset_stats(0u),
                                                                                      +
                                                                                      159  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                      +
                                                                                      160  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                      +
                                                                                      161  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                      +
                                                                                      162  support_fun(), counter_fun(), delete_counters(true),
                                                                                      +
                                                                                      163  delete_rules(true),
                                                                                      +
                                                                                      164  delete_rules_dyn(true),
                                                                                      +
                                                                                      165  transform_model_fun(nullptr),
                                                                                      +
                                                                                      166  transform_model_term_names(0u)
                                                                                      +
                                                                                      167 {
                                                                                      +
                                                                                      168 
                                                                                      +
                                                                                      169  // Counters are shared
                                                                                      +
                                                                                      170  support_fun.set_counters(counters);
                                                                                      +
                                                                                      171  counter_fun.set_counters(counters);
                                                                                      +
                                                                                      172 
                                                                                      +
                                                                                      173  // Rules are shared
                                                                                      +
                                                                                      174  support_fun.set_rules(rules);
                                                                                      +
                                                                                      175  support_fun.set_rules_dyn(rules_dyn);
                                                                                      +
                                                                                      176 
                                                                                      +
                                                                                      177  return;
                                                                                      +
                                                                                      178 
                                                                                      +
                                                                                      179 }
                                                                                      +
                                                                                      180 
                                                                                      +
                                                                                      181 template <
                                                                                      +
                                                                                      182  typename Array_Type,
                                                                                      +
                                                                                      183  typename Data_Counter_Type,
                                                                                      +
                                                                                      184  typename Data_Rule_Type,
                                                                                      +
                                                                                      185  typename Data_Rule_Dyn_Type
                                                                                      +
                                                                                      186  >
                                                                                      +
                                                                                      187 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model(
                                                                                      +
                                                                                      188  size_t size_
                                                                                      +
                                                                                      189  ) :
                                                                                      +
                                                                                      190  stats_support(0u),
                                                                                      +
                                                                                      191  stats_support_n_arrays(0u),
                                                                                      +
                                                                                      192  stats_target(0u), arrays2support(0u), keys2support(0u),
                                                                                      +
                                                                                      193  pset_arrays(0u), pset_stats(0u),
                                                                                      +
                                                                                      194  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                      +
                                                                                      195  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                      +
                                                                                      196  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                      +
                                                                                      197  support_fun(), counter_fun(), delete_counters(true),
                                                                                      +
                                                                                      198  delete_rules(true),
                                                                                      +
                                                                                      199  delete_rules_dyn(true),
                                                                                      +
                                                                                      200  transform_model_fun(nullptr),
                                                                                      +
                                                                                      201  transform_model_term_names(0u)
                                                                                      +
                                                                                      202 {
                                                                                      203 
                                                                                      -
                                                                                      204 }
                                                                                      -
                                                                                      205 
                                                                                      -
                                                                                      206 template <
                                                                                      -
                                                                                      207  typename Array_Type,
                                                                                      -
                                                                                      208  typename Data_Counter_Type,
                                                                                      -
                                                                                      209  typename Data_Rule_Type,
                                                                                      -
                                                                                      210  typename Data_Rule_Dyn_Type
                                                                                      -
                                                                                      211  >
                                                                                      -
                                                                                      212 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model(
                                                                                      -
                                                                                      213  const Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> & Model_
                                                                                      -
                                                                                      214  ) :
                                                                                      -
                                                                                      215  stats_support(Model_.stats_support),
                                                                                      -
                                                                                      216  stats_support_n_arrays(Model_.stats_support_n_arrays),
                                                                                      -
                                                                                      217  stats_target(Model_.stats_target),
                                                                                      -
                                                                                      218  arrays2support(Model_.arrays2support),
                                                                                      -
                                                                                      219  keys2support(Model_.keys2support),
                                                                                      -
                                                                                      220  pset_arrays(Model_.pset_arrays),
                                                                                      -
                                                                                      221  pset_stats(Model_.pset_stats),
                                                                                      -
                                                                                      222  counters(new Counters<Array_Type,Data_Counter_Type>(*(Model_.counters))),
                                                                                      -
                                                                                      223  rules(new Rules<Array_Type,Data_Rule_Type>(*(Model_.rules))),
                                                                                      -
                                                                                      224  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>(*(Model_.rules_dyn))),
                                                                                      -
                                                                                      225  support_fun(),
                                                                                      -
                                                                                      226  counter_fun(),
                                                                                      -
                                                                                      227  params_last(Model_.params_last),
                                                                                      -
                                                                                      228  normalizing_constants(Model_.normalizing_constants),
                                                                                      -
                                                                                      229  first_calc_done(Model_.first_calc_done),
                                                                                      -
                                                                                      230  delete_counters(true),
                                                                                      -
                                                                                      231  delete_rules(true),
                                                                                      -
                                                                                      232  delete_rules_dyn(true),
                                                                                      -
                                                                                      233  transform_model_fun(Model_.transform_model_fun),
                                                                                      -
                                                                                      234  transform_model_term_names(Model_.transform_model_term_names)
                                                                                      -
                                                                                      235  {
                                                                                      -
                                                                                      236 
                                                                                      -
                                                                                      237  // Counters are shared
                                                                                      -
                                                                                      238  support_fun.set_counters(counters);
                                                                                      -
                                                                                      239  counter_fun.set_counters(counters);
                                                                                      -
                                                                                      240 
                                                                                      -
                                                                                      241  // Rules are shared
                                                                                      -
                                                                                      242  support_fun.set_rules(rules);
                                                                                      -
                                                                                      243  support_fun.set_rules_dyn(rules_dyn);
                                                                                      -
                                                                                      244 
                                                                                      -
                                                                                      245  return;
                                                                                      -
                                                                                      246 
                                                                                      -
                                                                                      247 }
                                                                                      -
                                                                                      248 
                                                                                      -
                                                                                      249 template <
                                                                                      -
                                                                                      250  typename Array_Type,
                                                                                      -
                                                                                      251  typename Data_Counter_Type,
                                                                                      -
                                                                                      252  typename Data_Rule_Type,
                                                                                      -
                                                                                      253  typename Data_Rule_Dyn_Type
                                                                                      -
                                                                                      254  >
                                                                                      -
                                                                                      255 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> &
                                                                                      -
                                                                                      256  Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::operator=(
                                                                                      -
                                                                                      257  const Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> & Model_
                                                                                      -
                                                                                      258 ) {
                                                                                      +
                                                                                      204  stats_target.reserve(size_);
                                                                                      +
                                                                                      205  arrays2support.reserve(size_);
                                                                                      +
                                                                                      206 
                                                                                      +
                                                                                      207  // Counters are shared
                                                                                      +
                                                                                      208  support_fun.set_counters(counters);
                                                                                      +
                                                                                      209  counter_fun.set_counters(counters);
                                                                                      +
                                                                                      210 
                                                                                      +
                                                                                      211  // Rules are shared
                                                                                      +
                                                                                      212  support_fun.set_rules(rules);
                                                                                      +
                                                                                      213  support_fun.set_rules_dyn(rules_dyn);
                                                                                      +
                                                                                      214 
                                                                                      +
                                                                                      215  return;
                                                                                      +
                                                                                      216 
                                                                                      +
                                                                                      217 }
                                                                                      +
                                                                                      218 
                                                                                      +
                                                                                      219 template <
                                                                                      +
                                                                                      220  typename Array_Type,
                                                                                      +
                                                                                      221  typename Data_Counter_Type,
                                                                                      +
                                                                                      222  typename Data_Rule_Type,
                                                                                      +
                                                                                      223  typename Data_Rule_Dyn_Type
                                                                                      +
                                                                                      224  >
                                                                                      +
                                                                                      225 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::Model(
                                                                                      +
                                                                                      226  const Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> & Model_
                                                                                      +
                                                                                      227  ) :
                                                                                      +
                                                                                      228  stats_support(Model_.stats_support),
                                                                                      +
                                                                                      229  stats_support_n_arrays(Model_.stats_support_n_arrays),
                                                                                      +
                                                                                      230  stats_target(Model_.stats_target),
                                                                                      +
                                                                                      231  arrays2support(Model_.arrays2support),
                                                                                      +
                                                                                      232  keys2support(Model_.keys2support),
                                                                                      +
                                                                                      233  pset_arrays(Model_.pset_arrays),
                                                                                      +
                                                                                      234  pset_stats(Model_.pset_stats),
                                                                                      +
                                                                                      235  counters(new Counters<Array_Type,Data_Counter_Type>(*(Model_.counters))),
                                                                                      +
                                                                                      236  rules(new Rules<Array_Type,Data_Rule_Type>(*(Model_.rules))),
                                                                                      +
                                                                                      237  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>(*(Model_.rules_dyn))),
                                                                                      +
                                                                                      238  support_fun(),
                                                                                      +
                                                                                      239  counter_fun(),
                                                                                      +
                                                                                      240  params_last(Model_.params_last),
                                                                                      +
                                                                                      241  normalizing_constants(Model_.normalizing_constants),
                                                                                      +
                                                                                      242  first_calc_done(Model_.first_calc_done),
                                                                                      +
                                                                                      243  delete_counters(true),
                                                                                      +
                                                                                      244  delete_rules(true),
                                                                                      +
                                                                                      245  delete_rules_dyn(true),
                                                                                      +
                                                                                      246  transform_model_fun(Model_.transform_model_fun),
                                                                                      +
                                                                                      247  transform_model_term_names(Model_.transform_model_term_names)
                                                                                      +
                                                                                      248  {
                                                                                      +
                                                                                      249 
                                                                                      +
                                                                                      250  // Counters are shared
                                                                                      +
                                                                                      251  support_fun.set_counters(counters);
                                                                                      +
                                                                                      252  counter_fun.set_counters(counters);
                                                                                      +
                                                                                      253 
                                                                                      +
                                                                                      254  // Rules are shared
                                                                                      +
                                                                                      255  support_fun.set_rules(rules);
                                                                                      +
                                                                                      256  support_fun.set_rules_dyn(rules_dyn);
                                                                                      +
                                                                                      257 
                                                                                      +
                                                                                      258  return;
                                                                                      259 
                                                                                      -
                                                                                      260  // Clearing
                                                                                      -
                                                                                      261  if (this != &Model_) {
                                                                                      -
                                                                                      262 
                                                                                      -
                                                                                      263  if (delete_counters)
                                                                                      -
                                                                                      264  delete counters;
                                                                                      -
                                                                                      265 
                                                                                      -
                                                                                      266  if (delete_rules)
                                                                                      -
                                                                                      267  delete rules;
                                                                                      -
                                                                                      268 
                                                                                      -
                                                                                      269  if (delete_rules_dyn)
                                                                                      -
                                                                                      270  delete rules_dyn;
                                                                                      -
                                                                                      271 
                                                                                      -
                                                                                      272  stats_support = Model_.stats_support;
                                                                                      -
                                                                                      273  stats_support_n_arrays = Model_.stats_support_n_arrays;
                                                                                      -
                                                                                      274  stats_target = Model_.stats_target;
                                                                                      -
                                                                                      275  arrays2support = Model_.arrays2support;
                                                                                      -
                                                                                      276  keys2support = Model_.keys2support;
                                                                                      -
                                                                                      277  pset_arrays = Model_.pset_arrays;
                                                                                      -
                                                                                      278  pset_stats = Model_.pset_stats;
                                                                                      -
                                                                                      279  counters = new Counters<Array_Type,Data_Counter_Type>(*(Model_.counters));
                                                                                      -
                                                                                      280  rules = new Rules<Array_Type,Data_Rule_Type>(*(Model_.rules));
                                                                                      -
                                                                                      281  rules_dyn = new Rules<Array_Type,Data_Rule_Dyn_Type>(*(Model_.rules_dyn));
                                                                                      -
                                                                                      282  delete_counters = true;
                                                                                      -
                                                                                      283  delete_rules = true;
                                                                                      -
                                                                                      284  delete_rules_dyn = true;
                                                                                      -
                                                                                      285  params_last = Model_.params_last;
                                                                                      -
                                                                                      286  normalizing_constants = Model_.normalizing_constants;
                                                                                      -
                                                                                      287  first_calc_done = Model_.first_calc_done;
                                                                                      -
                                                                                      288  transform_model_fun = Model_.transform_model_fun;
                                                                                      -
                                                                                      289  transform_model_term_names = Model_.transform_model_term_names;
                                                                                      -
                                                                                      290 
                                                                                      -
                                                                                      291  // Counters are shared
                                                                                      -
                                                                                      292  support_fun.set_counters(counters);
                                                                                      -
                                                                                      293  counter_fun.set_counters(counters);
                                                                                      -
                                                                                      294 
                                                                                      -
                                                                                      295  // Rules are shared
                                                                                      -
                                                                                      296  support_fun.set_rules(rules);
                                                                                      -
                                                                                      297  support_fun.set_rules_dyn(rules_dyn);
                                                                                      -
                                                                                      298 
                                                                                      -
                                                                                      299  }
                                                                                      -
                                                                                      300 
                                                                                      -
                                                                                      301  return *this;
                                                                                      -
                                                                                      302 
                                                                                      -
                                                                                      303 }
                                                                                      -
                                                                                      304 
                                                                                      -
                                                                                      305 MODEL_TEMPLATE(void, store_psets)() noexcept {
                                                                                      -
                                                                                      306  // if (with_pset)
                                                                                      -
                                                                                      307  // throw std::logic_error("Powerset storage alreay activated.");
                                                                                      -
                                                                                      308  with_pset = true;
                                                                                      -
                                                                                      309  return;
                                                                                      -
                                                                                      310 }
                                                                                      -
                                                                                      311 
                                                                                      -
                                                                                      312 MODEL_TEMPLATE(std::vector< double >, gen_key)(
                                                                                      -
                                                                                      313  const Array_Type & Array_
                                                                                      -
                                                                                      314 ) {
                                                                                      -
                                                                                      315  return this->counters->gen_hash(Array_);
                                                                                      +
                                                                                      260 }
                                                                                      +
                                                                                      261 
                                                                                      +
                                                                                      262 template <
                                                                                      +
                                                                                      263  typename Array_Type,
                                                                                      +
                                                                                      264  typename Data_Counter_Type,
                                                                                      +
                                                                                      265  typename Data_Rule_Type,
                                                                                      +
                                                                                      266  typename Data_Rule_Dyn_Type
                                                                                      +
                                                                                      267  >
                                                                                      +
                                                                                      268 inline Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> &
                                                                                      +
                                                                                      269  Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::operator=(
                                                                                      +
                                                                                      270  const Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type> & Model_
                                                                                      +
                                                                                      271 ) {
                                                                                      +
                                                                                      272 
                                                                                      +
                                                                                      273  // Clearing
                                                                                      +
                                                                                      274  if (this != &Model_) {
                                                                                      +
                                                                                      275 
                                                                                      +
                                                                                      276  if (delete_counters)
                                                                                      +
                                                                                      277  delete counters;
                                                                                      +
                                                                                      278 
                                                                                      +
                                                                                      279  if (delete_rules)
                                                                                      +
                                                                                      280  delete rules;
                                                                                      +
                                                                                      281 
                                                                                      +
                                                                                      282  if (delete_rules_dyn)
                                                                                      +
                                                                                      283  delete rules_dyn;
                                                                                      +
                                                                                      284 
                                                                                      +
                                                                                      285  stats_support = Model_.stats_support;
                                                                                      +
                                                                                      286  stats_support_n_arrays = Model_.stats_support_n_arrays;
                                                                                      +
                                                                                      287  stats_target = Model_.stats_target;
                                                                                      +
                                                                                      288  arrays2support = Model_.arrays2support;
                                                                                      +
                                                                                      289  keys2support = Model_.keys2support;
                                                                                      +
                                                                                      290  pset_arrays = Model_.pset_arrays;
                                                                                      +
                                                                                      291  pset_stats = Model_.pset_stats;
                                                                                      +
                                                                                      292  counters = new Counters<Array_Type,Data_Counter_Type>(*(Model_.counters));
                                                                                      +
                                                                                      293  rules = new Rules<Array_Type,Data_Rule_Type>(*(Model_.rules));
                                                                                      +
                                                                                      294  rules_dyn = new Rules<Array_Type,Data_Rule_Dyn_Type>(*(Model_.rules_dyn));
                                                                                      +
                                                                                      295  delete_counters = true;
                                                                                      +
                                                                                      296  delete_rules = true;
                                                                                      +
                                                                                      297  delete_rules_dyn = true;
                                                                                      +
                                                                                      298  params_last = Model_.params_last;
                                                                                      +
                                                                                      299  normalizing_constants = Model_.normalizing_constants;
                                                                                      +
                                                                                      300  first_calc_done = Model_.first_calc_done;
                                                                                      +
                                                                                      301  transform_model_fun = Model_.transform_model_fun;
                                                                                      +
                                                                                      302  transform_model_term_names = Model_.transform_model_term_names;
                                                                                      +
                                                                                      303 
                                                                                      +
                                                                                      304  // Counters are shared
                                                                                      +
                                                                                      305  support_fun.set_counters(counters);
                                                                                      +
                                                                                      306  counter_fun.set_counters(counters);
                                                                                      +
                                                                                      307 
                                                                                      +
                                                                                      308  // Rules are shared
                                                                                      +
                                                                                      309  support_fun.set_rules(rules);
                                                                                      +
                                                                                      310  support_fun.set_rules_dyn(rules_dyn);
                                                                                      +
                                                                                      311 
                                                                                      +
                                                                                      312  }
                                                                                      +
                                                                                      313 
                                                                                      +
                                                                                      314  return *this;
                                                                                      +
                                                                                      315 
                                                                                      316 }
                                                                                      317 
                                                                                      -
                                                                                      318 MODEL_TEMPLATE(void, add_counter)(
                                                                                      -
                                                                                      319  Counter<Array_Type, Data_Counter_Type> & counter
                                                                                      -
                                                                                      320 ) {
                                                                                      -
                                                                                      321 
                                                                                      -
                                                                                      322  counters->add_counter(counter, Data_Counter_Type());
                                                                                      -
                                                                                      323  return;
                                                                                      +
                                                                                      318 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      319 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: store_psets() noexcept {
                                                                                      +
                                                                                      320  // if (with_pset)
                                                                                      +
                                                                                      321  // throw std::logic_error("Powerset storage alreay activated.");
                                                                                      +
                                                                                      322  with_pset = true;
                                                                                      +
                                                                                      323  return;
                                                                                      324 }
                                                                                      325 
                                                                                      -
                                                                                      326 MODEL_TEMPLATE(void, add_counter)(
                                                                                      -
                                                                                      327  Counter_fun_type<Array_Type,Data_Counter_Type> count_fun_,
                                                                                      -
                                                                                      328  Counter_fun_type<Array_Type,Data_Counter_Type> init_fun_,
                                                                                      -
                                                                                      329  Data_Counter_Type data_
                                                                                      -
                                                                                      330 ) {
                                                                                      -
                                                                                      331 
                                                                                      -
                                                                                      332  counters->add_counter(
                                                                                      -
                                                                                      333  count_fun_,
                                                                                      -
                                                                                      334  init_fun_,
                                                                                      -
                                                                                      335  data_
                                                                                      -
                                                                                      336  );
                                                                                      +
                                                                                      326 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      327 inline std::vector< double > Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: gen_key(
                                                                                      +
                                                                                      328  const Array_Type & Array_
                                                                                      +
                                                                                      329 ) {
                                                                                      +
                                                                                      330  return this->counters->gen_hash(Array_);
                                                                                      +
                                                                                      331 }
                                                                                      +
                                                                                      332 
                                                                                      +
                                                                                      333 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      334 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_counter(
                                                                                      +
                                                                                      335  Counter<Array_Type, Data_Counter_Type> & counter
                                                                                      +
                                                                                      336 ) {
                                                                                      337 
                                                                                      -
                                                                                      338  return;
                                                                                      -
                                                                                      339 
                                                                                      +
                                                                                      338  counters->add_counter(counter, Data_Counter_Type());
                                                                                      +
                                                                                      339  return;
                                                                                      340 }
                                                                                      341 
                                                                                      -
                                                                                      342 MODEL_TEMPLATE(void, set_counters)(
                                                                                      -
                                                                                      343  Counters<Array_Type,Data_Counter_Type> * counters_
                                                                                      -
                                                                                      344 ) {
                                                                                      -
                                                                                      345 
                                                                                      -
                                                                                      346  if (delete_counters) {
                                                                                      -
                                                                                      347  delete counters;
                                                                                      -
                                                                                      348  delete_counters = false;
                                                                                      -
                                                                                      349  }
                                                                                      -
                                                                                      350 
                                                                                      -
                                                                                      351  this->counters = counters_;
                                                                                      -
                                                                                      352  support_fun.set_counters(counters);
                                                                                      -
                                                                                      353  counter_fun.set_counters(counters);
                                                                                      +
                                                                                      342 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      343 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_counter(
                                                                                      +
                                                                                      344  Counter_fun_type<Array_Type,Data_Counter_Type> count_fun_,
                                                                                      +
                                                                                      345  Counter_fun_type<Array_Type,Data_Counter_Type> init_fun_,
                                                                                      +
                                                                                      346  Data_Counter_Type data_
                                                                                      +
                                                                                      347 ) {
                                                                                      +
                                                                                      348 
                                                                                      +
                                                                                      349  counters->add_counter(
                                                                                      +
                                                                                      350  count_fun_,
                                                                                      +
                                                                                      351  init_fun_,
                                                                                      +
                                                                                      352  data_
                                                                                      +
                                                                                      353  );
                                                                                      354 
                                                                                      355  return;
                                                                                      356 
                                                                                      357 }
                                                                                      358 
                                                                                      -
                                                                                      359 MODEL_TEMPLATE(void, add_hasher)(
                                                                                      -
                                                                                      360  Hasher_fun_type<Array_Type,Data_Counter_Type> fun_
                                                                                      -
                                                                                      361 ) {
                                                                                      -
                                                                                      362 
                                                                                      -
                                                                                      363  counters->add_hash(fun_);
                                                                                      -
                                                                                      364 
                                                                                      -
                                                                                      365 }
                                                                                      -
                                                                                      366 
                                                                                      -
                                                                                      368 
                                                                                      -
                                                                                      369 MODEL_TEMPLATE(void, add_rule)(
                                                                                      -
                                                                                      370  Rule<Array_Type, Data_Rule_Type> & rules
                                                                                      -
                                                                                      371 ) {
                                                                                      +
                                                                                      359 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      360 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: set_counters(
                                                                                      +
                                                                                      361  Counters<Array_Type,Data_Counter_Type> * counters_
                                                                                      +
                                                                                      362 ) {
                                                                                      +
                                                                                      363 
                                                                                      +
                                                                                      364  if (delete_counters) {
                                                                                      +
                                                                                      365  delete counters;
                                                                                      +
                                                                                      366  delete_counters = false;
                                                                                      +
                                                                                      367  }
                                                                                      +
                                                                                      368 
                                                                                      +
                                                                                      369  this->counters = counters_;
                                                                                      +
                                                                                      370  support_fun.set_counters(counters);
                                                                                      +
                                                                                      371  counter_fun.set_counters(counters);
                                                                                      372 
                                                                                      -
                                                                                      373  rules->add_rule(rules, Data_Rule_Type());
                                                                                      -
                                                                                      374  return;
                                                                                      +
                                                                                      373  return;
                                                                                      +
                                                                                      374 
                                                                                      375 }
                                                                                      376 
                                                                                      -
                                                                                      377 
                                                                                      -
                                                                                      378 MODEL_TEMPLATE(void, set_rules)(
                                                                                      -
                                                                                      379  Rules<Array_Type,Data_Rule_Type> * rules_
                                                                                      +
                                                                                      377 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      378 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_hasher(
                                                                                      +
                                                                                      379  Hasher_fun_type<Array_Type,Data_Counter_Type> fun_
                                                                                      380 ) {
                                                                                      381 
                                                                                      -
                                                                                      382  if (delete_rules)
                                                                                      -
                                                                                      383  delete rules;
                                                                                      -
                                                                                      384 
                                                                                      -
                                                                                      385  this->rules = rules_;
                                                                                      -
                                                                                      386  this->delete_rules = false;
                                                                                      +
                                                                                      382  counters->add_hash(fun_);
                                                                                      +
                                                                                      383 
                                                                                      +
                                                                                      384 }
                                                                                      +
                                                                                      385 
                                                                                      387 
                                                                                      -
                                                                                      388  support_fun.set_rules(rules);
                                                                                      -
                                                                                      389  return;
                                                                                      -
                                                                                      390 
                                                                                      -
                                                                                      391 }
                                                                                      -
                                                                                      392 
                                                                                      -
                                                                                      394 
                                                                                      -
                                                                                      395 MODEL_TEMPLATE(void, add_rule_dyn)(
                                                                                      -
                                                                                      396  Rule<Array_Type, Data_Rule_Dyn_Type> & rules_
                                                                                      -
                                                                                      397 ) {
                                                                                      -
                                                                                      398 
                                                                                      -
                                                                                      399  rules_dyn->add_rule(rules_, Data_Rule_Dyn_Type());
                                                                                      -
                                                                                      400  return;
                                                                                      -
                                                                                      401 }
                                                                                      +
                                                                                      388 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      389 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_rule(
                                                                                      +
                                                                                      390  Rule<Array_Type, Data_Rule_Type> & rules
                                                                                      +
                                                                                      391 ) {
                                                                                      +
                                                                                      392 
                                                                                      +
                                                                                      393  rules->add_rule(rules, Data_Rule_Type());
                                                                                      +
                                                                                      394  return;
                                                                                      +
                                                                                      395 }
                                                                                      +
                                                                                      396 
                                                                                      +
                                                                                      397 
                                                                                      +
                                                                                      398 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      399 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: set_rules(
                                                                                      +
                                                                                      400  Rules<Array_Type,Data_Rule_Type> * rules_
                                                                                      +
                                                                                      401 ) {
                                                                                      402 
                                                                                      -
                                                                                      403 MODEL_TEMPLATE(void, add_rule_dyn)(
                                                                                      -
                                                                                      404  Rule_fun_type<Array_Type,Data_Rule_Dyn_Type> rule_fun_,
                                                                                      -
                                                                                      405  Data_Rule_Dyn_Type data_
                                                                                      -
                                                                                      406 ) {
                                                                                      -
                                                                                      407 
                                                                                      -
                                                                                      408  rules_dyn->add_rule(
                                                                                      -
                                                                                      409  rule_fun_,
                                                                                      -
                                                                                      410  data_
                                                                                      -
                                                                                      411  );
                                                                                      -
                                                                                      412 
                                                                                      -
                                                                                      413  return;
                                                                                      -
                                                                                      414 
                                                                                      -
                                                                                      415 }
                                                                                      -
                                                                                      416 
                                                                                      -
                                                                                      417 MODEL_TEMPLATE(void, set_rules_dyn)(
                                                                                      -
                                                                                      418  Rules<Array_Type,Data_Rule_Dyn_Type> * rules_
                                                                                      +
                                                                                      403  if (delete_rules)
                                                                                      +
                                                                                      404  delete rules;
                                                                                      +
                                                                                      405 
                                                                                      +
                                                                                      406  this->rules = rules_;
                                                                                      +
                                                                                      407  this->delete_rules = false;
                                                                                      +
                                                                                      408 
                                                                                      +
                                                                                      409  support_fun.set_rules(rules);
                                                                                      +
                                                                                      410  return;
                                                                                      +
                                                                                      411 
                                                                                      +
                                                                                      412 }
                                                                                      +
                                                                                      413 
                                                                                      +
                                                                                      415 
                                                                                      +
                                                                                      416 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      417 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_rule_dyn(
                                                                                      +
                                                                                      418  Rule<Array_Type, Data_Rule_Dyn_Type> & rules_
                                                                                      419 ) {
                                                                                      -
                                                                                      420 
                                                                                      -
                                                                                      421  if (delete_rules_dyn)
                                                                                      -
                                                                                      422  delete rules_dyn;
                                                                                      -
                                                                                      423 
                                                                                      -
                                                                                      424  this->rules_dyn = rules_;
                                                                                      -
                                                                                      425  this->delete_rules_dyn = false;
                                                                                      -
                                                                                      426  support_fun.set_rules_dyn(rules_dyn);
                                                                                      -
                                                                                      427  return;
                                                                                      -
                                                                                      428 
                                                                                      -
                                                                                      429 }
                                                                                      -
                                                                                      430 
                                                                                      -
                                                                                      431 
                                                                                      -
                                                                                      433 
                                                                                      -
                                                                                      434 MODEL_TEMPLATE(size_t, add_array)(
                                                                                      -
                                                                                      435  const Array_Type & Array_,
                                                                                      -
                                                                                      436  bool force_new
                                                                                      -
                                                                                      437 ) {
                                                                                      -
                                                                                      438 
                                                                                      -
                                                                                      439  // Array counts (target statistics)
                                                                                      -
                                                                                      440  counter_fun.reset_array(&Array_);
                                                                                      -
                                                                                      441 
                                                                                      -
                                                                                      442  if (transform_model_fun)
                                                                                      -
                                                                                      443  {
                                                                                      -
                                                                                      444 
                                                                                      -
                                                                                      445  auto tmpcounts = counter_fun.count_all();
                                                                                      -
                                                                                      446  stats_target.emplace_back(
                                                                                      -
                                                                                      447  transform_model_fun(&tmpcounts[0u], tmpcounts.size())
                                                                                      -
                                                                                      448  );
                                                                                      -
                                                                                      449 
                                                                                      -
                                                                                      450  } else
                                                                                      -
                                                                                      451  stats_target.push_back(counter_fun.count_all());
                                                                                      -
                                                                                      452 
                                                                                      -
                                                                                      453  // If the data hasn't been analyzed earlier, then we need to compute
                                                                                      -
                                                                                      454  // the support
                                                                                      -
                                                                                      455  std::vector< double > key = counters->gen_hash(Array_);
                                                                                      -
                                                                                      456  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                      -
                                                                                      457  if (force_new | (locator == keys2support.end()))
                                                                                      -
                                                                                      458  {
                                                                                      -
                                                                                      459 
                                                                                      -
                                                                                      460  // Adding to the map
                                                                                      -
                                                                                      461  keys2support[key] = stats_support.size();
                                                                                      -
                                                                                      462  stats_support_n_arrays.push_back(1u); // How many elements now
                                                                                      -
                                                                                      463  arrays2support.push_back(stats_support.size()); // Map of the array id to the support
                                                                                      -
                                                                                      464 
                                                                                      -
                                                                                      465  // Computing support using the counters included in the model
                                                                                      -
                                                                                      466  support_fun.reset_array(Array_);
                                                                                      -
                                                                                      467 
                                                                                      -
                                                                                      470  if (with_pset)
                                                                                      -
                                                                                      471  {
                                                                                      -
                                                                                      472 
                                                                                      -
                                                                                      473  // Making space for storing the support
                                                                                      -
                                                                                      474  pset_arrays.resize(pset_arrays.size() + 1u);
                                                                                      -
                                                                                      475  pset_stats.resize(pset_stats.size() + 1u);
                                                                                      -
                                                                                      476  pset_probs.resize(pset_probs.size() + 1u);
                                                                                      -
                                                                                      477 
                                                                                      -
                                                                                      478  try
                                                                                      -
                                                                                      479  {
                                                                                      -
                                                                                      480 
                                                                                      -
                                                                                      481  support_fun.calc(
                                                                                      -
                                                                                      482  &(pset_arrays[pset_arrays.size() - 1u]),
                                                                                      -
                                                                                      483  &(pset_stats[pset_stats.size() - 1u])
                                                                                      -
                                                                                      484  );
                                                                                      -
                                                                                      485 
                                                                                      -
                                                                                      486  }
                                                                                      -
                                                                                      487  catch (const std::exception& e)
                                                                                      -
                                                                                      488  {
                                                                                      -
                                                                                      489 
                                                                                      -
                                                                                      490  printf_barry(
                                                                                      -
                                                                                      491  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                      -
                                                                                      492  );
                                                                                      -
                                                                                      493  printf_barry("with error %s\n", e.what());
                                                                                      -
                                                                                      494  printf_barry("Here is the array that generated the error.\n");
                                                                                      -
                                                                                      495  Array_.print();
                                                                                      -
                                                                                      496  throw std::logic_error("");
                                                                                      -
                                                                                      497 
                                                                                      -
                                                                                      498  }
                                                                                      -
                                                                                      499 
                                                                                      -
                                                                                      500  }
                                                                                      -
                                                                                      501  else
                                                                                      -
                                                                                      502  {
                                                                                      -
                                                                                      503  try
                                                                                      -
                                                                                      504  {
                                                                                      -
                                                                                      505 
                                                                                      -
                                                                                      506  support_fun.calc();
                                                                                      -
                                                                                      507 
                                                                                      -
                                                                                      508  }
                                                                                      -
                                                                                      509  catch (const std::exception& e)
                                                                                      -
                                                                                      510  {
                                                                                      -
                                                                                      511 
                                                                                      -
                                                                                      512  printf_barry(
                                                                                      -
                                                                                      513  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                      -
                                                                                      514  );
                                                                                      -
                                                                                      515  printf_barry("with error %s\n", e.what());
                                                                                      -
                                                                                      516  printf_barry("Here is the array that generated the error.\n");
                                                                                      -
                                                                                      517  Array_.print();
                                                                                      -
                                                                                      518  throw std::logic_error("");
                                                                                      -
                                                                                      519 
                                                                                      -
                                                                                      520  }
                                                                                      -
                                                                                      521  }
                                                                                      -
                                                                                      522 
                                                                                      -
                                                                                      523  if (transform_model_fun)
                                                                                      -
                                                                                      524  {
                                                                                      -
                                                                                      525  auto tmpsupport = support_fun.get_counts();
                                                                                      -
                                                                                      526  size_t k = counter_fun.size();
                                                                                      -
                                                                                      527  size_t n = tmpsupport.size() / (k + 1);
                                                                                      -
                                                                                      528 
                                                                                      -
                                                                                      529  std::vector< double > s_new(0u);
                                                                                      -
                                                                                      530  s_new.reserve(tmpsupport.size());
                                                                                      -
                                                                                      531 
                                                                                      -
                                                                                      532  for (size_t i = 0u; i < n; ++i)
                                                                                      -
                                                                                      533  {
                                                                                      -
                                                                                      534 
                                                                                      -
                                                                                      535  // Appending size
                                                                                      -
                                                                                      536  s_new.push_back(tmpsupport[i * (k + 1u)]);
                                                                                      -
                                                                                      537 
                                                                                      -
                                                                                      538  // Applying transformation and adding to the new set
                                                                                      -
                                                                                      539  auto res = transform_model_fun(&tmpsupport[i * (k + 1u) + 1u], k);
                                                                                      -
                                                                                      540  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                      -
                                                                                      541 
                                                                                      -
                                                                                      542  }
                                                                                      +
                                                                                      420 
                                                                                      +
                                                                                      421  rules_dyn->add_rule(rules_, Data_Rule_Dyn_Type());
                                                                                      +
                                                                                      422  return;
                                                                                      +
                                                                                      423 }
                                                                                      +
                                                                                      424 
                                                                                      +
                                                                                      425 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      426 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_rule_dyn(
                                                                                      +
                                                                                      427  Rule_fun_type<Array_Type,Data_Rule_Dyn_Type> rule_fun_,
                                                                                      +
                                                                                      428  Data_Rule_Dyn_Type data_
                                                                                      +
                                                                                      429 ) {
                                                                                      +
                                                                                      430 
                                                                                      +
                                                                                      431  rules_dyn->add_rule(
                                                                                      +
                                                                                      432  rule_fun_,
                                                                                      +
                                                                                      433  data_
                                                                                      +
                                                                                      434  );
                                                                                      +
                                                                                      435 
                                                                                      +
                                                                                      436  return;
                                                                                      +
                                                                                      437 
                                                                                      +
                                                                                      438 }
                                                                                      +
                                                                                      439 
                                                                                      +
                                                                                      440 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      441 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: set_rules_dyn(
                                                                                      +
                                                                                      442  Rules<Array_Type,Data_Rule_Dyn_Type> * rules_
                                                                                      +
                                                                                      443 ) {
                                                                                      +
                                                                                      444 
                                                                                      +
                                                                                      445  if (delete_rules_dyn)
                                                                                      +
                                                                                      446  delete rules_dyn;
                                                                                      +
                                                                                      447 
                                                                                      +
                                                                                      448  this->rules_dyn = rules_;
                                                                                      +
                                                                                      449  this->delete_rules_dyn = false;
                                                                                      +
                                                                                      450  support_fun.set_rules_dyn(rules_dyn);
                                                                                      +
                                                                                      451  return;
                                                                                      +
                                                                                      452 
                                                                                      +
                                                                                      453 }
                                                                                      +
                                                                                      454 
                                                                                      +
                                                                                      456 
                                                                                      +
                                                                                      457 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      458 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: add_array(
                                                                                      +
                                                                                      459  const Array_Type & Array_,
                                                                                      +
                                                                                      460  bool force_new
                                                                                      +
                                                                                      461 ) {
                                                                                      +
                                                                                      462 
                                                                                      +
                                                                                      463  // Array counts (target statistics)
                                                                                      +
                                                                                      464  counter_fun.reset_array(&Array_);
                                                                                      +
                                                                                      465 
                                                                                      +
                                                                                      466  if (transform_model_fun)
                                                                                      +
                                                                                      467  {
                                                                                      +
                                                                                      468 
                                                                                      +
                                                                                      469  auto tmpcounts = counter_fun.count_all();
                                                                                      +
                                                                                      470  stats_target.emplace_back(
                                                                                      +
                                                                                      471  transform_model_fun(&tmpcounts[0u], tmpcounts.size())
                                                                                      +
                                                                                      472  );
                                                                                      +
                                                                                      473 
                                                                                      +
                                                                                      474  } else
                                                                                      +
                                                                                      475  stats_target.push_back(counter_fun.count_all());
                                                                                      +
                                                                                      476 
                                                                                      +
                                                                                      477  // If the data hasn't been analyzed earlier, then we need to compute
                                                                                      +
                                                                                      478  // the support
                                                                                      +
                                                                                      479  std::vector< double > key = counters->gen_hash(Array_);
                                                                                      +
                                                                                      480  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                      +
                                                                                      481  if (force_new | (locator == keys2support.end()))
                                                                                      +
                                                                                      482  {
                                                                                      +
                                                                                      483 
                                                                                      +
                                                                                      484  // Adding to the map
                                                                                      +
                                                                                      485  keys2support[key] = stats_support.size();
                                                                                      +
                                                                                      486  stats_support_n_arrays.push_back(1u); // How many elements now
                                                                                      +
                                                                                      487  arrays2support.push_back(stats_support.size()); // Map of the array id to the support
                                                                                      +
                                                                                      488 
                                                                                      +
                                                                                      489  // Computing support using the counters included in the model
                                                                                      +
                                                                                      490  support_fun.reset_array(Array_);
                                                                                      +
                                                                                      491 
                                                                                      +
                                                                                      494  if (with_pset)
                                                                                      +
                                                                                      495  {
                                                                                      +
                                                                                      496 
                                                                                      +
                                                                                      497  // Making space for storing the support
                                                                                      +
                                                                                      498  pset_arrays.resize(pset_arrays.size() + 1u);
                                                                                      +
                                                                                      499  pset_stats.resize(pset_stats.size() + 1u);
                                                                                      +
                                                                                      500  pset_probs.resize(pset_probs.size() + 1u);
                                                                                      +
                                                                                      501 
                                                                                      +
                                                                                      502  try
                                                                                      +
                                                                                      503  {
                                                                                      +
                                                                                      504 
                                                                                      +
                                                                                      505  support_fun.calc(
                                                                                      +
                                                                                      506  &(pset_arrays[pset_arrays.size() - 1u]),
                                                                                      +
                                                                                      507  &(pset_stats[pset_stats.size() - 1u])
                                                                                      +
                                                                                      508  );
                                                                                      +
                                                                                      509 
                                                                                      +
                                                                                      510  }
                                                                                      +
                                                                                      511  catch (const std::exception& e)
                                                                                      +
                                                                                      512  {
                                                                                      +
                                                                                      513 
                                                                                      +
                                                                                      514  printf_barry(
                                                                                      +
                                                                                      515  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                      +
                                                                                      516  );
                                                                                      +
                                                                                      517  printf_barry("with error %s\n", e.what());
                                                                                      +
                                                                                      518  printf_barry("Here is the array that generated the error.\n");
                                                                                      +
                                                                                      519  Array_.print();
                                                                                      +
                                                                                      520  throw std::logic_error("");
                                                                                      +
                                                                                      521 
                                                                                      +
                                                                                      522  }
                                                                                      +
                                                                                      523 
                                                                                      +
                                                                                      524  }
                                                                                      +
                                                                                      525  else
                                                                                      +
                                                                                      526  {
                                                                                      +
                                                                                      527  try
                                                                                      +
                                                                                      528  {
                                                                                      +
                                                                                      529 
                                                                                      +
                                                                                      530  support_fun.calc();
                                                                                      +
                                                                                      531 
                                                                                      +
                                                                                      532  }
                                                                                      +
                                                                                      533  catch (const std::exception& e)
                                                                                      +
                                                                                      534  {
                                                                                      +
                                                                                      535 
                                                                                      +
                                                                                      536  printf_barry(
                                                                                      +
                                                                                      537  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                      +
                                                                                      538  );
                                                                                      +
                                                                                      539  printf_barry("with error %s\n", e.what());
                                                                                      +
                                                                                      540  printf_barry("Here is the array that generated the error.\n");
                                                                                      +
                                                                                      541  Array_.print();
                                                                                      +
                                                                                      542  throw std::logic_error("");
                                                                                      543 
                                                                                      -
                                                                                      544  stats_support.push_back(s_new);
                                                                                      -
                                                                                      545 
                                                                                      -
                                                                                      546  } else
                                                                                      -
                                                                                      547  stats_support.push_back(support_fun.get_counts());
                                                                                      -
                                                                                      548 
                                                                                      -
                                                                                      549  // Making room for the previous parameters. This will be used to check if
                                                                                      -
                                                                                      550  // the normalizing constant has been updated or not.
                                                                                      -
                                                                                      551  params_last.push_back(stats_target[0u]);
                                                                                      -
                                                                                      552  normalizing_constants.push_back(0.0);
                                                                                      -
                                                                                      553  first_calc_done.push_back(false);
                                                                                      -
                                                                                      554 
                                                                                      -
                                                                                      555  return arrays2support.size() - 1u;
                                                                                      -
                                                                                      556 
                                                                                      -
                                                                                      557  }
                                                                                      -
                                                                                      558 
                                                                                      -
                                                                                      559  // Increasing the number of arrays in that stat
                                                                                      -
                                                                                      560  ++stats_support_n_arrays[locator->second];
                                                                                      -
                                                                                      561 
                                                                                      -
                                                                                      562  // Adding the corresponding map
                                                                                      -
                                                                                      563  arrays2support.push_back(locator->second);
                                                                                      -
                                                                                      564 
                                                                                      -
                                                                                      565  return arrays2support.size() - 1u;
                                                                                      -
                                                                                      566 
                                                                                      -
                                                                                      567 }
                                                                                      -
                                                                                      568 
                                                                                      -
                                                                                      569 MODEL_TEMPLATE(double, likelihood)(
                                                                                      -
                                                                                      570  const std::vector<double> & params,
                                                                                      -
                                                                                      571  const size_t & i,
                                                                                      -
                                                                                      572  bool as_log
                                                                                      -
                                                                                      573 ) {
                                                                                      -
                                                                                      574 
                                                                                      -
                                                                                      575  // Checking if the index exists
                                                                                      -
                                                                                      576  if (i >= arrays2support.size())
                                                                                      -
                                                                                      577  throw std::range_error("The requested support is out of range");
                                                                                      -
                                                                                      578 
                                                                                      -
                                                                                      579  size_t idx = arrays2support[i];
                                                                                      -
                                                                                      580 
                                                                                      -
                                                                                      581  // Checking if this actually has a change of happening
                                                                                      -
                                                                                      582  if (this->stats_support[idx].size() == 0u)
                                                                                      -
                                                                                      583  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      -
                                                                                      584 
                                                                                      -
                                                                                      585  // Checking if we have updated the normalizing constant or not
                                                                                      -
                                                                                      586  if (!first_calc_done[idx] || !vec_equal_approx(params, params_last[idx]) )
                                                                                      -
                                                                                      587  {
                                                                                      -
                                                                                      588 
                                                                                      -
                                                                                      589  first_calc_done[idx] = true;
                                                                                      -
                                                                                      590 
                                                                                      -
                                                                                      591  size_t k = params.size() + 1u;
                                                                                      -
                                                                                      592  size_t n = stats_support[idx].size() / k;
                                                                                      -
                                                                                      593 
                                                                                      -
                                                                                      594  normalizing_constants[idx] = update_normalizing_constant(
                                                                                      -
                                                                                      595  &params[0u], &stats_support[idx][0u], k, n
                                                                                      -
                                                                                      596  );
                                                                                      -
                                                                                      597 
                                                                                      -
                                                                                      598  params_last[idx] = params;
                                                                                      -
                                                                                      599 
                                                                                      -
                                                                                      600  }
                                                                                      -
                                                                                      601 
                                                                                      -
                                                                                      602  return likelihood_(
                                                                                      -
                                                                                      603  &stats_target[i],
                                                                                      -
                                                                                      604  params,
                                                                                      -
                                                                                      605  normalizing_constants[idx],
                                                                                      -
                                                                                      606  nterms(),
                                                                                      -
                                                                                      607  as_log
                                                                                      -
                                                                                      608  );
                                                                                      -
                                                                                      609 
                                                                                      -
                                                                                      610 }
                                                                                      -
                                                                                      611 
                                                                                      -
                                                                                      612 MODEL_TEMPLATE(double, likelihood)(
                                                                                      -
                                                                                      613  const std::vector<double> & params,
                                                                                      -
                                                                                      614  const Array_Type & Array_,
                                                                                      -
                                                                                      615  int i,
                                                                                      -
                                                                                      616  bool as_log
                                                                                      -
                                                                                      617 ) {
                                                                                      -
                                                                                      618 
                                                                                      -
                                                                                      619  // Key of the support set to use
                                                                                      -
                                                                                      620  int loc;
                                                                                      -
                                                                                      621 
                                                                                      -
                                                                                      622  if (i < 0)
                                                                                      -
                                                                                      623  {
                                                                                      -
                                                                                      624 
                                                                                      -
                                                                                      625  std::vector< double > key = counters->gen_hash(Array_);
                                                                                      -
                                                                                      626  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                      -
                                                                                      627  if (locator == keys2support.end())
                                                                                      -
                                                                                      628  throw std::range_error(
                                                                                      -
                                                                                      629  "This type of array has not been included in the model."
                                                                                      -
                                                                                      630  );
                                                                                      -
                                                                                      631 
                                                                                      -
                                                                                      632  loc = locator->second;
                                                                                      -
                                                                                      633 
                                                                                      -
                                                                                      634  }
                                                                                      -
                                                                                      635  else
                                                                                      -
                                                                                      636  {
                                                                                      -
                                                                                      637 
                                                                                      -
                                                                                      638  if (static_cast<size_t>(i) >= arrays2support.size())
                                                                                      -
                                                                                      639  throw std::range_error(
                                                                                      -
                                                                                      640  "This type of array has not been included in the model."
                                                                                      -
                                                                                      641  );
                                                                                      -
                                                                                      642 
                                                                                      -
                                                                                      643  loc = arrays2support[i];
                                                                                      -
                                                                                      644 
                                                                                      -
                                                                                      645  }
                                                                                      -
                                                                                      646 
                                                                                      -
                                                                                      647  // Checking if this actually has a change of happening
                                                                                      -
                                                                                      648  if (this->stats_support[loc].size() == 0u)
                                                                                      -
                                                                                      649  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      -
                                                                                      650 
                                                                                      -
                                                                                      651  // Counting stats_target
                                                                                      -
                                                                                      652  StatsCounter< Array_Type, Data_Counter_Type> tmpstats(&Array_);
                                                                                      -
                                                                                      653 
                                                                                      -
                                                                                      654  tmpstats.set_counters(this->counters);
                                                                                      -
                                                                                      655 
                                                                                      -
                                                                                      656  std::vector< double > target_ = tmpstats.count_all();
                                                                                      +
                                                                                      544  }
                                                                                      +
                                                                                      545  }
                                                                                      +
                                                                                      546 
                                                                                      +
                                                                                      547  if (transform_model_fun)
                                                                                      +
                                                                                      548  {
                                                                                      +
                                                                                      549  auto tmpsupport = support_fun.get_counts();
                                                                                      +
                                                                                      550  size_t k = counter_fun.size();
                                                                                      +
                                                                                      551  size_t n = tmpsupport.size() / (k + 1);
                                                                                      +
                                                                                      552 
                                                                                      +
                                                                                      553  std::vector< double > s_new(0u);
                                                                                      +
                                                                                      554  s_new.reserve(tmpsupport.size());
                                                                                      +
                                                                                      555 
                                                                                      +
                                                                                      556  for (size_t i = 0u; i < n; ++i)
                                                                                      +
                                                                                      557  {
                                                                                      +
                                                                                      558 
                                                                                      +
                                                                                      559  // Appending size
                                                                                      +
                                                                                      560  s_new.push_back(tmpsupport[i * (k + 1u)]);
                                                                                      +
                                                                                      561 
                                                                                      +
                                                                                      562  // Applying transformation and adding to the new set
                                                                                      +
                                                                                      563  auto res = transform_model_fun(&tmpsupport[i * (k + 1u) + 1u], k);
                                                                                      +
                                                                                      564  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                      +
                                                                                      565 
                                                                                      +
                                                                                      566  }
                                                                                      +
                                                                                      567 
                                                                                      +
                                                                                      568  stats_support.push_back(s_new);
                                                                                      +
                                                                                      569 
                                                                                      +
                                                                                      570  } else
                                                                                      +
                                                                                      571  stats_support.push_back(support_fun.get_counts());
                                                                                      +
                                                                                      572 
                                                                                      +
                                                                                      573  // Making room for the previous parameters. This will be used to check if
                                                                                      +
                                                                                      574  // the normalizing constant has been updated or not.
                                                                                      +
                                                                                      575  params_last.push_back(stats_target[0u]);
                                                                                      +
                                                                                      576  normalizing_constants.push_back(0.0);
                                                                                      +
                                                                                      577  first_calc_done.push_back(false);
                                                                                      +
                                                                                      578 
                                                                                      +
                                                                                      579  return arrays2support.size() - 1u;
                                                                                      +
                                                                                      580 
                                                                                      +
                                                                                      581  }
                                                                                      +
                                                                                      582 
                                                                                      +
                                                                                      583  // Increasing the number of arrays in that stat
                                                                                      +
                                                                                      584  ++stats_support_n_arrays[locator->second];
                                                                                      +
                                                                                      585 
                                                                                      +
                                                                                      586  // Adding the corresponding map
                                                                                      +
                                                                                      587  arrays2support.push_back(locator->second);
                                                                                      +
                                                                                      588 
                                                                                      +
                                                                                      589  return arrays2support.size() - 1u;
                                                                                      +
                                                                                      590 
                                                                                      +
                                                                                      591 }
                                                                                      +
                                                                                      592 
                                                                                      +
                                                                                      593 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      594 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                      +
                                                                                      595  const std::vector<double> & params,
                                                                                      +
                                                                                      596  const size_t & i,
                                                                                      +
                                                                                      597  bool as_log,
                                                                                      +
                                                                                      598  BARRY_NCORES_ARG()
                                                                                      +
                                                                                      599 ) {
                                                                                      +
                                                                                      600 
                                                                                      +
                                                                                      601  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      +
                                                                                      602  omp_set_num_threads(ncores);
                                                                                      +
                                                                                      603  #endif
                                                                                      +
                                                                                      604 
                                                                                      +
                                                                                      605  // Checking if the index exists
                                                                                      +
                                                                                      606  if (i >= arrays2support.size())
                                                                                      +
                                                                                      607  throw std::range_error("The requested support is out of range");
                                                                                      +
                                                                                      608 
                                                                                      +
                                                                                      609  size_t idx = arrays2support[i];
                                                                                      +
                                                                                      610 
                                                                                      +
                                                                                      611  // Checking if this actually has a change of happening
                                                                                      +
                                                                                      612  if (this->stats_support[idx].size() == 0u)
                                                                                      +
                                                                                      613  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      +
                                                                                      614 
                                                                                      +
                                                                                      615  // Checking if we have updated the normalizing constant or not
                                                                                      +
                                                                                      616  if (!first_calc_done[idx] || !vec_equal_approx(params, params_last[idx]) )
                                                                                      +
                                                                                      617  {
                                                                                      +
                                                                                      618 
                                                                                      +
                                                                                      619  first_calc_done[idx] = true;
                                                                                      +
                                                                                      620 
                                                                                      +
                                                                                      621  size_t k = params.size() + 1u;
                                                                                      +
                                                                                      622  size_t n = stats_support[idx].size() / k;
                                                                                      +
                                                                                      623 
                                                                                      +
                                                                                      624  normalizing_constants[idx] = update_normalizing_constant(
                                                                                      +
                                                                                      625  &params[0u], &stats_support[idx][0u], k, n
                                                                                      +
                                                                                      626  );
                                                                                      +
                                                                                      627 
                                                                                      +
                                                                                      628  params_last[idx] = params;
                                                                                      +
                                                                                      629 
                                                                                      +
                                                                                      630  }
                                                                                      +
                                                                                      631 
                                                                                      +
                                                                                      632  return likelihood_(
                                                                                      +
                                                                                      633  &stats_target[i],
                                                                                      +
                                                                                      634  params,
                                                                                      +
                                                                                      635  normalizing_constants[idx],
                                                                                      +
                                                                                      636  nterms(),
                                                                                      +
                                                                                      637  as_log
                                                                                      +
                                                                                      638  );
                                                                                      +
                                                                                      639 
                                                                                      +
                                                                                      640 }
                                                                                      +
                                                                                      641 
                                                                                      +
                                                                                      642 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      643 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                      +
                                                                                      644  const std::vector<double> & params,
                                                                                      +
                                                                                      645  const Array_Type & Array_,
                                                                                      +
                                                                                      646  int i,
                                                                                      +
                                                                                      647  bool as_log,
                                                                                      +
                                                                                      648  BARRY_NCORES_ARG()
                                                                                      +
                                                                                      649 ) {
                                                                                      +
                                                                                      650 
                                                                                      +
                                                                                      651  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      +
                                                                                      652  omp_set_num_threads(ncores);
                                                                                      +
                                                                                      653  #endif
                                                                                      +
                                                                                      654 
                                                                                      +
                                                                                      655  // Key of the support set to use
                                                                                      +
                                                                                      656  int loc;
                                                                                      657 
                                                                                      -
                                                                                      658  if (transform_model_fun)
                                                                                      -
                                                                                      659  target_ = transform_model_fun(&target_[0u], target_.size());
                                                                                      +
                                                                                      658  if (i < 0)
                                                                                      +
                                                                                      659  {
                                                                                      660 
                                                                                      -
                                                                                      661  // Checking if we have updated the normalizing constant or not
                                                                                      -
                                                                                      662  if (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc]) )
                                                                                      -
                                                                                      663  {
                                                                                      -
                                                                                      664 
                                                                                      -
                                                                                      665  first_calc_done[loc] = true;
                                                                                      -
                                                                                      666 
                                                                                      -
                                                                                      667  size_t k = params.size() + 1u;
                                                                                      -
                                                                                      668  size_t n = stats_support[loc].size() / k;
                                                                                      -
                                                                                      669 
                                                                                      -
                                                                                      670  normalizing_constants[loc] = update_normalizing_constant(
                                                                                      -
                                                                                      671  &params[0u], &stats_support[loc][0u], k, n
                                                                                      -
                                                                                      672  );
                                                                                      -
                                                                                      673 
                                                                                      -
                                                                                      674  params_last[loc] = params;
                                                                                      -
                                                                                      675 
                                                                                      -
                                                                                      676  }
                                                                                      -
                                                                                      677 
                                                                                      -
                                                                                      678  // Checking if passes the rules
                                                                                      -
                                                                                      679  if (!support_fun.eval_rules_dyn(target_, 0u, 0u))
                                                                                      -
                                                                                      680  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      -
                                                                                      681 
                                                                                      -
                                                                                      682  return likelihood_(
                                                                                      -
                                                                                      683  &target_[0u],
                                                                                      -
                                                                                      684  params,
                                                                                      -
                                                                                      685  normalizing_constants[loc],
                                                                                      -
                                                                                      686  nterms(),
                                                                                      -
                                                                                      687  as_log
                                                                                      -
                                                                                      688  );
                                                                                      -
                                                                                      689 
                                                                                      -
                                                                                      690 }
                                                                                      -
                                                                                      691 
                                                                                      -
                                                                                      692 MODEL_TEMPLATE(double, likelihood)(
                                                                                      -
                                                                                      693  const std::vector<double> & params,
                                                                                      -
                                                                                      694  const std::vector<double> & target_,
                                                                                      -
                                                                                      695  const size_t & i,
                                                                                      -
                                                                                      696  bool as_log
                                                                                      -
                                                                                      697 ) {
                                                                                      -
                                                                                      698 
                                                                                      -
                                                                                      699  // Checking if the index exists
                                                                                      -
                                                                                      700  if (i >= arrays2support.size())
                                                                                      -
                                                                                      701  throw std::range_error("The requested support is out of range");
                                                                                      +
                                                                                      661  std::vector< double > key = counters->gen_hash(Array_);
                                                                                      +
                                                                                      662  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                      +
                                                                                      663  if (locator == keys2support.end())
                                                                                      +
                                                                                      664  throw std::range_error(
                                                                                      +
                                                                                      665  "This type of array has not been included in the model."
                                                                                      +
                                                                                      666  );
                                                                                      +
                                                                                      667 
                                                                                      +
                                                                                      668  loc = locator->second;
                                                                                      +
                                                                                      669 
                                                                                      +
                                                                                      670  }
                                                                                      +
                                                                                      671  else
                                                                                      +
                                                                                      672  {
                                                                                      +
                                                                                      673 
                                                                                      +
                                                                                      674  if (static_cast<size_t>(i) >= arrays2support.size())
                                                                                      +
                                                                                      675  throw std::range_error(
                                                                                      +
                                                                                      676  "This type of array has not been included in the model."
                                                                                      +
                                                                                      677  );
                                                                                      +
                                                                                      678 
                                                                                      +
                                                                                      679  loc = arrays2support[i];
                                                                                      +
                                                                                      680 
                                                                                      +
                                                                                      681  }
                                                                                      +
                                                                                      682 
                                                                                      +
                                                                                      683  // Checking if this actually has a change of happening
                                                                                      +
                                                                                      684  if (this->stats_support[loc].size() == 0u)
                                                                                      +
                                                                                      685  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      +
                                                                                      686 
                                                                                      +
                                                                                      687  // Counting stats_target
                                                                                      +
                                                                                      688  StatsCounter< Array_Type, Data_Counter_Type> tmpstats(&Array_);
                                                                                      +
                                                                                      689 
                                                                                      +
                                                                                      690  tmpstats.set_counters(this->counters);
                                                                                      +
                                                                                      691 
                                                                                      +
                                                                                      692  std::vector< double > target_ = tmpstats.count_all();
                                                                                      +
                                                                                      693 
                                                                                      +
                                                                                      694  if (transform_model_fun)
                                                                                      +
                                                                                      695  target_ = transform_model_fun(&target_[0u], target_.size());
                                                                                      +
                                                                                      696 
                                                                                      +
                                                                                      697  // Checking if we have updated the normalizing constant or not
                                                                                      +
                                                                                      698  if (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc]) )
                                                                                      +
                                                                                      699  {
                                                                                      +
                                                                                      700 
                                                                                      +
                                                                                      701  first_calc_done[loc] = true;
                                                                                      702 
                                                                                      -
                                                                                      703  size_t loc = arrays2support[i];
                                                                                      -
                                                                                      704 
                                                                                      -
                                                                                      705  // Checking if passes the rules
                                                                                      -
                                                                                      706  if (!support_fun.eval_rules_dyn(target_, 0u, 0u))
                                                                                      -
                                                                                      707  {
                                                                                      -
                                                                                      708 
                                                                                      -
                                                                                      709  // Concatenating the elements of target_ into aa single string
                                                                                      -
                                                                                      710  std::string target_str = "";
                                                                                      -
                                                                                      711  for (size_t i = 0u; i < target_.size(); ++i)
                                                                                      -
                                                                                      712  target_str += std::to_string(target_[i]) + " ";
                                                                                      +
                                                                                      703  size_t k = params.size() + 1u;
                                                                                      +
                                                                                      704  size_t n = stats_support[loc].size() / k;
                                                                                      +
                                                                                      705 
                                                                                      +
                                                                                      706  normalizing_constants[loc] = update_normalizing_constant(
                                                                                      +
                                                                                      707  &params[0u], &stats_support[loc][0u], k, n
                                                                                      +
                                                                                      708  );
                                                                                      +
                                                                                      709 
                                                                                      +
                                                                                      710  params_last[loc] = params;
                                                                                      +
                                                                                      711 
                                                                                      +
                                                                                      712  }
                                                                                      713 
                                                                                      -
                                                                                      714  throw std::range_error(
                                                                                      -
                                                                                      715  "The array is not in the support set. The array's statistics are: " +
                                                                                      -
                                                                                      716  target_str +
                                                                                      -
                                                                                      717  std::string(".")
                                                                                      -
                                                                                      718  );
                                                                                      -
                                                                                      719  }
                                                                                      -
                                                                                      720 
                                                                                      -
                                                                                      721 
                                                                                      -
                                                                                      722  // Checking if this actually has a change of happening
                                                                                      -
                                                                                      723  if (this->stats_support[loc].size() == 0u)
                                                                                      -
                                                                                      724  {
                                                                                      -
                                                                                      725  // return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      -
                                                                                      726  throw std::logic_error("The support set for this array is empty.");
                                                                                      -
                                                                                      727  }
                                                                                      -
                                                                                      728 
                                                                                      -
                                                                                      729  // Checking if we have updated the normalizing constant or not
                                                                                      -
                                                                                      730  if (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc]) ) {
                                                                                      -
                                                                                      731 
                                                                                      -
                                                                                      732  first_calc_done[loc] = true;
                                                                                      -
                                                                                      733 
                                                                                      -
                                                                                      734  size_t k = params.size() + 1u;
                                                                                      -
                                                                                      735  size_t n = stats_support[loc].size() / k;
                                                                                      +
                                                                                      714  // Checking if passes the rules
                                                                                      +
                                                                                      715  if (!support_fun.eval_rules_dyn(target_, 0u, 0u))
                                                                                      +
                                                                                      716  return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      +
                                                                                      717 
                                                                                      +
                                                                                      718  return likelihood_(
                                                                                      +
                                                                                      719  &target_[0u],
                                                                                      +
                                                                                      720  params,
                                                                                      +
                                                                                      721  normalizing_constants[loc],
                                                                                      +
                                                                                      722  nterms(),
                                                                                      +
                                                                                      723  as_log
                                                                                      +
                                                                                      724  );
                                                                                      +
                                                                                      725 
                                                                                      +
                                                                                      726 }
                                                                                      +
                                                                                      727 
                                                                                      +
                                                                                      728 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      729 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                      +
                                                                                      730  const std::vector<double> & params,
                                                                                      +
                                                                                      731  const std::vector<double> & target_,
                                                                                      +
                                                                                      732  const size_t & i,
                                                                                      +
                                                                                      733  bool as_log,
                                                                                      +
                                                                                      734  BARRY_NCORES_ARG()
                                                                                      +
                                                                                      735 ) {
                                                                                      736 
                                                                                      -
                                                                                      737  normalizing_constants[loc] = update_normalizing_constant(
                                                                                      -
                                                                                      738  &params[0u], &stats_support[loc][0u], k, n
                                                                                      -
                                                                                      739  );
                                                                                      -
                                                                                      740 
                                                                                      -
                                                                                      741  params_last[loc] = params;
                                                                                      -
                                                                                      742 
                                                                                      -
                                                                                      743  }
                                                                                      -
                                                                                      744 
                                                                                      -
                                                                                      745  return likelihood_(
                                                                                      -
                                                                                      746  &target_[0u],
                                                                                      -
                                                                                      747  params,
                                                                                      -
                                                                                      748  normalizing_constants[loc],
                                                                                      -
                                                                                      749  nterms(),
                                                                                      -
                                                                                      750  as_log
                                                                                      -
                                                                                      751  );
                                                                                      -
                                                                                      752 
                                                                                      -
                                                                                      753 }
                                                                                      -
                                                                                      754 
                                                                                      -
                                                                                      755 MODEL_TEMPLATE(double, likelihood)(
                                                                                      -
                                                                                      756  const std::vector<double> & params,
                                                                                      -
                                                                                      757  const double * target_,
                                                                                      -
                                                                                      758  const size_t & i,
                                                                                      -
                                                                                      759  bool as_log
                                                                                      -
                                                                                      760 ) {
                                                                                      -
                                                                                      761 
                                                                                      -
                                                                                      762  // Checking if the index exists
                                                                                      -
                                                                                      763  if (i >= arrays2support.size())
                                                                                      -
                                                                                      764  throw std::range_error("The requested support is out of range");
                                                                                      -
                                                                                      765 
                                                                                      -
                                                                                      766  size_t loc = arrays2support[i];
                                                                                      -
                                                                                      767 
                                                                                      -
                                                                                      768  // Checking if passes the rules
                                                                                      -
                                                                                      769  if (support_fun.get_rules_dyn()->size() > 0u)
                                                                                      -
                                                                                      770  {
                                                                                      -
                                                                                      771 
                                                                                      -
                                                                                      772  std::vector< double > tmp_target;
                                                                                      -
                                                                                      773  tmp_target.reserve(nterms());
                                                                                      -
                                                                                      774  for (size_t t = 0u; t < nterms(); ++t)
                                                                                      -
                                                                                      775  tmp_target.push_back(*(target_ + t));
                                                                                      -
                                                                                      776 
                                                                                      -
                                                                                      777  if (!support_fun.eval_rules_dyn(tmp_target, 0u, 0u))
                                                                                      -
                                                                                      778  {
                                                                                      -
                                                                                      779  // Concatenating the elements of target_ into aa single string
                                                                                      -
                                                                                      780  std::string target_str = "";
                                                                                      -
                                                                                      781  for (size_t i = 0u; i < nterms(); ++i)
                                                                                      -
                                                                                      782  target_str += std::to_string((*target_ + i)) + " ";
                                                                                      -
                                                                                      783 
                                                                                      -
                                                                                      784  throw std::range_error(
                                                                                      -
                                                                                      785  "The array is not in the support set. The array's statistics are: " + target_str + std::string(".")
                                                                                      -
                                                                                      786  );
                                                                                      -
                                                                                      787  // return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      -
                                                                                      788  }
                                                                                      -
                                                                                      789 
                                                                                      -
                                                                                      790  }
                                                                                      -
                                                                                      791 
                                                                                      -
                                                                                      792  // Checking if this actually has a change of happening
                                                                                      -
                                                                                      793  if (this->stats_support[loc].size() == 0u)
                                                                                      -
                                                                                      794  {
                                                                                      -
                                                                                      795  // return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      -
                                                                                      796  throw std::logic_error("The support set for this array is empty.");
                                                                                      -
                                                                                      797  }
                                                                                      -
                                                                                      798 
                                                                                      -
                                                                                      799  // Checking if we have updated the normalizing constant or not
                                                                                      -
                                                                                      800  if (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc]) ) {
                                                                                      -
                                                                                      801 
                                                                                      -
                                                                                      802  first_calc_done[loc] = true;
                                                                                      -
                                                                                      803 
                                                                                      -
                                                                                      804  size_t k = params.size() + 1u;
                                                                                      -
                                                                                      805  size_t n = stats_support[loc].size() / k;
                                                                                      -
                                                                                      806 
                                                                                      -
                                                                                      807  normalizing_constants[loc] = update_normalizing_constant(
                                                                                      -
                                                                                      808  &params[0u], &stats_support[loc][0u], k, n
                                                                                      -
                                                                                      809  );
                                                                                      -
                                                                                      810 
                                                                                      -
                                                                                      811  params_last[loc] = params;
                                                                                      -
                                                                                      812 
                                                                                      -
                                                                                      813  }
                                                                                      -
                                                                                      814 
                                                                                      -
                                                                                      815  return likelihood_(
                                                                                      -
                                                                                      816  target_,
                                                                                      -
                                                                                      817  params,
                                                                                      -
                                                                                      818  normalizing_constants[loc],
                                                                                      -
                                                                                      819  nterms(),
                                                                                      -
                                                                                      820  as_log
                                                                                      -
                                                                                      821  );
                                                                                      -
                                                                                      822 
                                                                                      -
                                                                                      823 }
                                                                                      +
                                                                                      737  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      +
                                                                                      738  omp_set_num_threads(ncores);
                                                                                      +
                                                                                      739  #endif
                                                                                      +
                                                                                      740 
                                                                                      +
                                                                                      741  // Checking if the index exists
                                                                                      +
                                                                                      742  if (i >= arrays2support.size())
                                                                                      +
                                                                                      743  throw std::range_error("The requested support is out of range");
                                                                                      +
                                                                                      744 
                                                                                      +
                                                                                      745  size_t loc = arrays2support[i];
                                                                                      +
                                                                                      746 
                                                                                      +
                                                                                      747  // Checking if passes the rules
                                                                                      +
                                                                                      748  if (!support_fun.eval_rules_dyn(target_, 0u, 0u))
                                                                                      +
                                                                                      749  {
                                                                                      +
                                                                                      750 
                                                                                      +
                                                                                      751  // Concatenating the elements of target_ into aa single string
                                                                                      +
                                                                                      752  std::string target_str = "";
                                                                                      +
                                                                                      753  for (size_t i = 0u; i < target_.size(); ++i)
                                                                                      +
                                                                                      754  target_str += std::to_string(target_[i]) + " ";
                                                                                      +
                                                                                      755 
                                                                                      +
                                                                                      756  throw std::range_error(
                                                                                      +
                                                                                      757  "The array is not in the support set. The array's statistics are: " +
                                                                                      +
                                                                                      758  target_str +
                                                                                      +
                                                                                      759  std::string(".")
                                                                                      +
                                                                                      760  );
                                                                                      +
                                                                                      761  }
                                                                                      +
                                                                                      762 
                                                                                      +
                                                                                      763 
                                                                                      +
                                                                                      764  // Checking if this actually has a change of happening
                                                                                      +
                                                                                      765  if (this->stats_support[loc].size() == 0u)
                                                                                      +
                                                                                      766  {
                                                                                      +
                                                                                      767  // return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      +
                                                                                      768  throw std::logic_error("The support set for this array is empty.");
                                                                                      +
                                                                                      769  }
                                                                                      +
                                                                                      770 
                                                                                      +
                                                                                      771  // Checking if we have updated the normalizing constant or not
                                                                                      +
                                                                                      772  if (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc]) ) {
                                                                                      +
                                                                                      773 
                                                                                      +
                                                                                      774  first_calc_done[loc] = true;
                                                                                      +
                                                                                      775 
                                                                                      +
                                                                                      776  size_t k = params.size() + 1u;
                                                                                      +
                                                                                      777  size_t n = stats_support[loc].size() / k;
                                                                                      +
                                                                                      778 
                                                                                      +
                                                                                      779  normalizing_constants[loc] = update_normalizing_constant(
                                                                                      +
                                                                                      780  &params[0u], &stats_support[loc][0u], k, n
                                                                                      +
                                                                                      781  );
                                                                                      +
                                                                                      782 
                                                                                      +
                                                                                      783  params_last[loc] = params;
                                                                                      +
                                                                                      784 
                                                                                      +
                                                                                      785  }
                                                                                      +
                                                                                      786 
                                                                                      +
                                                                                      787  return likelihood_(
                                                                                      +
                                                                                      788  &target_[0u],
                                                                                      +
                                                                                      789  params,
                                                                                      +
                                                                                      790  normalizing_constants[loc],
                                                                                      +
                                                                                      791  nterms(),
                                                                                      +
                                                                                      792  as_log
                                                                                      +
                                                                                      793  );
                                                                                      +
                                                                                      794 
                                                                                      +
                                                                                      795 }
                                                                                      +
                                                                                      796 
                                                                                      +
                                                                                      797 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      798 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood(
                                                                                      +
                                                                                      799  const std::vector<double> & params,
                                                                                      +
                                                                                      800  const double * target_,
                                                                                      +
                                                                                      801  const size_t & i,
                                                                                      +
                                                                                      802  bool as_log,
                                                                                      +
                                                                                      803  BARRY_NCORES_ARG()
                                                                                      +
                                                                                      804 ) {
                                                                                      +
                                                                                      805 
                                                                                      +
                                                                                      806  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      +
                                                                                      807  omp_set_num_threads(ncores);
                                                                                      +
                                                                                      808  #endif
                                                                                      +
                                                                                      809 
                                                                                      +
                                                                                      810  // Checking if the index exists
                                                                                      +
                                                                                      811  if (i >= arrays2support.size())
                                                                                      +
                                                                                      812  throw std::range_error("The requested support is out of range");
                                                                                      +
                                                                                      813 
                                                                                      +
                                                                                      814  size_t loc = arrays2support[i];
                                                                                      +
                                                                                      815 
                                                                                      +
                                                                                      816  // Checking if passes the rules
                                                                                      +
                                                                                      817  if (support_fun.get_rules_dyn()->size() > 0u)
                                                                                      +
                                                                                      818  {
                                                                                      +
                                                                                      819 
                                                                                      +
                                                                                      820  std::vector< double > tmp_target;
                                                                                      +
                                                                                      821  tmp_target.reserve(nterms());
                                                                                      +
                                                                                      822  for (size_t t = 0u; t < nterms(); ++t)
                                                                                      +
                                                                                      823  tmp_target.push_back(*(target_ + t));
                                                                                      824 
                                                                                      -
                                                                                      825 MODEL_TEMPLATE(double, likelihood_total)(
                                                                                      -
                                                                                      826  const std::vector<double> & params,
                                                                                      -
                                                                                      827  bool as_log
                                                                                      -
                                                                                      828 ) {
                                                                                      -
                                                                                      829 
                                                                                      -
                                                                                      830  size_t params_last_size = params_last.size();
                                                                                      +
                                                                                      825  if (!support_fun.eval_rules_dyn(tmp_target, 0u, 0u))
                                                                                      +
                                                                                      826  {
                                                                                      +
                                                                                      827  // Concatenating the elements of target_ into aa single string
                                                                                      +
                                                                                      828  std::string target_str = "";
                                                                                      +
                                                                                      829  for (size_t i = 0u; i < nterms(); ++i)
                                                                                      +
                                                                                      830  target_str += std::to_string((*target_ + i)) + " ";
                                                                                      831 
                                                                                      -
                                                                                      832  for (size_t i = 0u; i < params_last_size; ++i)
                                                                                      -
                                                                                      833  {
                                                                                      -
                                                                                      834 
                                                                                      -
                                                                                      835  if (!first_calc_done[i] || !vec_equal_approx(params, params_last[i]) )
                                                                                      -
                                                                                      836  {
                                                                                      +
                                                                                      832  throw std::range_error(
                                                                                      +
                                                                                      833  "The array is not in the support set. The array's statistics are: " + target_str + std::string(".")
                                                                                      +
                                                                                      834  );
                                                                                      +
                                                                                      835  // return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      +
                                                                                      836  }
                                                                                      837 
                                                                                      -
                                                                                      838  size_t k = params.size() + 1u;
                                                                                      -
                                                                                      839  size_t n = stats_support[i].size() / k;
                                                                                      -
                                                                                      840 
                                                                                      -
                                                                                      841  first_calc_done[i] = true;
                                                                                      -
                                                                                      842  normalizing_constants[i] = update_normalizing_constant(
                                                                                      -
                                                                                      843  &params[0u], &stats_support[i][0u], k, n
                                                                                      -
                                                                                      844  );
                                                                                      -
                                                                                      845 
                                                                                      -
                                                                                      846  params_last[i] = params;
                                                                                      -
                                                                                      847 
                                                                                      -
                                                                                      848  }
                                                                                      -
                                                                                      849 
                                                                                      -
                                                                                      850  }
                                                                                      -
                                                                                      851 
                                                                                      -
                                                                                      852  double res = 0.0;
                                                                                      -
                                                                                      853  if (as_log)
                                                                                      -
                                                                                      854  {
                                                                                      -
                                                                                      855 
                                                                                      -
                                                                                      856  for (size_t i = 0; i < stats_target.size(); ++i)
                                                                                      -
                                                                                      857  res += vec_inner_prod(
                                                                                      -
                                                                                      858  &stats_target[i][0u],
                                                                                      -
                                                                                      859  &params[0u],
                                                                                      -
                                                                                      860  params.size()
                                                                                      -
                                                                                      861  ) BARRY_SAFE_EXP;
                                                                                      -
                                                                                      862 
                                                                                      -
                                                                                      863  #ifdef __OPENM
                                                                                      -
                                                                                      864  #pragma omp simd reduction(-:res)
                                                                                      -
                                                                                      865  #endif
                                                                                      -
                                                                                      866  for (size_t i = 0u; i < params_last_size; ++i)
                                                                                      -
                                                                                      867  res -= (std::log(normalizing_constants[i]) * this->stats_support_n_arrays[i]);
                                                                                      -
                                                                                      868 
                                                                                      -
                                                                                      869  } else {
                                                                                      -
                                                                                      870 
                                                                                      -
                                                                                      871  res = 1.0;
                                                                                      -
                                                                                      872  size_t stats_target_size = stats_target.size();
                                                                                      -
                                                                                      873  #ifdef __OPENM
                                                                                      -
                                                                                      874  #pragma omp simd reduction(*:res)
                                                                                      -
                                                                                      875  #endif
                                                                                      -
                                                                                      876  for (size_t i = 0; i < stats_target_size; ++i)
                                                                                      -
                                                                                      877  res *= std::exp(
                                                                                      -
                                                                                      878  vec_inner_prod(
                                                                                      -
                                                                                      879  &stats_target[i][0u],
                                                                                      -
                                                                                      880  &params[0u],
                                                                                      -
                                                                                      881  params.size()
                                                                                      -
                                                                                      882  ) BARRY_SAFE_EXP) /
                                                                                      -
                                                                                      883  normalizing_constants[arrays2support[i]];
                                                                                      -
                                                                                      884 
                                                                                      -
                                                                                      885  }
                                                                                      -
                                                                                      886 
                                                                                      -
                                                                                      887  return res;
                                                                                      -
                                                                                      888 
                                                                                      -
                                                                                      889 }
                                                                                      -
                                                                                      890 
                                                                                      -
                                                                                      891 MODEL_TEMPLATE(double, get_norm_const)(
                                                                                      -
                                                                                      892  const std::vector<double> & params,
                                                                                      -
                                                                                      893  const size_t & i,
                                                                                      -
                                                                                      894  bool as_log
                                                                                      -
                                                                                      895 ) {
                                                                                      -
                                                                                      896 
                                                                                      -
                                                                                      897  // Checking if the index exists
                                                                                      -
                                                                                      898  if (i >= arrays2support.size())
                                                                                      -
                                                                                      899  throw std::range_error("The requested support is out of range");
                                                                                      -
                                                                                      900 
                                                                                      -
                                                                                      901  const auto id = arrays2support[i];
                                                                                      -
                                                                                      902 
                                                                                      -
                                                                                      903  // Checking if we have updated the normalizing constant or not
                                                                                      -
                                                                                      904  if (!first_calc_done[id] || !vec_equal_approx(params, params_last[id]) )
                                                                                      -
                                                                                      905  {
                                                                                      -
                                                                                      906 
                                                                                      -
                                                                                      907  first_calc_done[id] = true;
                                                                                      -
                                                                                      908 
                                                                                      -
                                                                                      909  size_t k = params.size() + 1u;
                                                                                      -
                                                                                      910  size_t n = stats_support[id].size() / k;
                                                                                      -
                                                                                      911 
                                                                                      -
                                                                                      912  normalizing_constants[id] = update_normalizing_constant(
                                                                                      -
                                                                                      913  &params[0u], &stats_support[id][0u], k, n
                                                                                      -
                                                                                      914  );
                                                                                      -
                                                                                      915 
                                                                                      -
                                                                                      916  params_last[id] = params;
                                                                                      -
                                                                                      917 
                                                                                      -
                                                                                      918  }
                                                                                      -
                                                                                      919 
                                                                                      -
                                                                                      920  return as_log ?
                                                                                      -
                                                                                      921  std::log(normalizing_constants[id]) :
                                                                                      -
                                                                                      922  normalizing_constants[id]
                                                                                      -
                                                                                      923  ;
                                                                                      -
                                                                                      924 
                                                                                      -
                                                                                      925 }
                                                                                      -
                                                                                      926 
                                                                                      -
                                                                                      927 MODEL_TEMPLATE(const std::vector< Array_Type > *, get_pset)(
                                                                                      -
                                                                                      928  const size_t & i
                                                                                      -
                                                                                      929 ) {
                                                                                      -
                                                                                      930 
                                                                                      -
                                                                                      931  if (i >= arrays2support.size())
                                                                                      -
                                                                                      932  throw std::range_error("The requested support is out of range");
                                                                                      -
                                                                                      933 
                                                                                      -
                                                                                      934 
                                                                                      -
                                                                                      935  return &pset_arrays[arrays2support[i]];
                                                                                      -
                                                                                      936 
                                                                                      -
                                                                                      937 }
                                                                                      -
                                                                                      938 
                                                                                      -
                                                                                      939 MODEL_TEMPLATE(const std::vector< double > *, get_pset_stats)(
                                                                                      -
                                                                                      940  const size_t & i
                                                                                      -
                                                                                      941 ) {
                                                                                      -
                                                                                      942 
                                                                                      -
                                                                                      943  if (i >= arrays2support.size())
                                                                                      -
                                                                                      944  throw std::range_error("The requested support is out of range");
                                                                                      -
                                                                                      945 
                                                                                      -
                                                                                      946  return &pset_stats[arrays2support[i]];
                                                                                      -
                                                                                      947 
                                                                                      -
                                                                                      948 }
                                                                                      -
                                                                                      949 
                                                                                      -
                                                                                      950 MODEL_TEMPLATE(void, print_stats)(size_t i) const
                                                                                      -
                                                                                      951 {
                                                                                      -
                                                                                      952 
                                                                                      -
                                                                                      953  if (i >= arrays2support.size())
                                                                                      +
                                                                                      838  }
                                                                                      +
                                                                                      839 
                                                                                      +
                                                                                      840  // Checking if this actually has a change of happening
                                                                                      +
                                                                                      841  if (this->stats_support[loc].size() == 0u)
                                                                                      +
                                                                                      842  {
                                                                                      +
                                                                                      843  // return as_log ? -std::numeric_limits<double>::infinity() : 0.0;
                                                                                      +
                                                                                      844  throw std::logic_error("The support set for this array is empty.");
                                                                                      +
                                                                                      845  }
                                                                                      +
                                                                                      846 
                                                                                      +
                                                                                      847  // Checking if we have updated the normalizing constant or not
                                                                                      +
                                                                                      848  if (!first_calc_done[loc] || !vec_equal_approx(params, params_last[loc]) ) {
                                                                                      +
                                                                                      849 
                                                                                      +
                                                                                      850  first_calc_done[loc] = true;
                                                                                      +
                                                                                      851 
                                                                                      +
                                                                                      852  size_t k = params.size() + 1u;
                                                                                      +
                                                                                      853  size_t n = stats_support[loc].size() / k;
                                                                                      +
                                                                                      854 
                                                                                      +
                                                                                      855  normalizing_constants[loc] = update_normalizing_constant(
                                                                                      +
                                                                                      856  &params[0u], &stats_support[loc][0u], k, n
                                                                                      +
                                                                                      857  );
                                                                                      +
                                                                                      858 
                                                                                      +
                                                                                      859  params_last[loc] = params;
                                                                                      +
                                                                                      860 
                                                                                      +
                                                                                      861  }
                                                                                      +
                                                                                      862 
                                                                                      +
                                                                                      863  return likelihood_(
                                                                                      +
                                                                                      864  target_,
                                                                                      +
                                                                                      865  params,
                                                                                      +
                                                                                      866  normalizing_constants[loc],
                                                                                      +
                                                                                      867  nterms(),
                                                                                      +
                                                                                      868  as_log
                                                                                      +
                                                                                      869  );
                                                                                      +
                                                                                      870 
                                                                                      +
                                                                                      871 }
                                                                                      +
                                                                                      872 
                                                                                      +
                                                                                      873 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      874 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::likelihood_total(
                                                                                      +
                                                                                      875  const std::vector<double> & params,
                                                                                      +
                                                                                      876  bool as_log,
                                                                                      +
                                                                                      877  BARRY_NCORES_ARG()
                                                                                      +
                                                                                      878 ) {
                                                                                      +
                                                                                      879 
                                                                                      +
                                                                                      880  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      +
                                                                                      881  omp_set_num_threads(ncores);
                                                                                      +
                                                                                      882  #endif
                                                                                      +
                                                                                      883 
                                                                                      +
                                                                                      884  size_t params_last_size = params_last.size();
                                                                                      +
                                                                                      885 
                                                                                      +
                                                                                      886  for (size_t i = 0u; i < params_last_size; ++i)
                                                                                      +
                                                                                      887  {
                                                                                      +
                                                                                      888 
                                                                                      +
                                                                                      889  if (!first_calc_done[i] || !vec_equal_approx(params, params_last[i]) )
                                                                                      +
                                                                                      890  {
                                                                                      +
                                                                                      891 
                                                                                      +
                                                                                      892  size_t k = params.size() + 1u;
                                                                                      +
                                                                                      893  size_t n = stats_support[i].size() / k;
                                                                                      +
                                                                                      894 
                                                                                      +
                                                                                      895  first_calc_done[i] = true;
                                                                                      +
                                                                                      896  normalizing_constants[i] = update_normalizing_constant(
                                                                                      +
                                                                                      897  &params[0u], &stats_support[i][0u], k, n
                                                                                      +
                                                                                      898  );
                                                                                      +
                                                                                      899 
                                                                                      +
                                                                                      900  params_last[i] = params;
                                                                                      +
                                                                                      901 
                                                                                      +
                                                                                      902  }
                                                                                      +
                                                                                      903 
                                                                                      +
                                                                                      904  }
                                                                                      +
                                                                                      905 
                                                                                      +
                                                                                      906  double res = 0.0;
                                                                                      +
                                                                                      907  if (as_log)
                                                                                      +
                                                                                      908  {
                                                                                      +
                                                                                      909 
                                                                                      +
                                                                                      910  for (size_t i = 0; i < stats_target.size(); ++i)
                                                                                      +
                                                                                      911  res += vec_inner_prod(
                                                                                      +
                                                                                      912  &stats_target[i][0u],
                                                                                      +
                                                                                      913  &params[0u],
                                                                                      +
                                                                                      914  params.size()
                                                                                      +
                                                                                      915  ) BARRY_SAFE_EXP;
                                                                                      +
                                                                                      916 
                                                                                      +
                                                                                      917  #ifdef __OPENM
                                                                                      +
                                                                                      918  #pragma omp simd reduction(-:res)
                                                                                      +
                                                                                      919  #endif
                                                                                      +
                                                                                      920  for (size_t i = 0u; i < params_last_size; ++i)
                                                                                      +
                                                                                      921  res -= (std::log(normalizing_constants[i]) * this->stats_support_n_arrays[i]);
                                                                                      +
                                                                                      922 
                                                                                      +
                                                                                      923  } else {
                                                                                      +
                                                                                      924 
                                                                                      +
                                                                                      925  res = 1.0;
                                                                                      +
                                                                                      926  size_t stats_target_size = stats_target.size();
                                                                                      +
                                                                                      927  #ifdef __OPENM
                                                                                      +
                                                                                      928  #pragma omp simd reduction(*:res)
                                                                                      +
                                                                                      929  #endif
                                                                                      +
                                                                                      930  for (size_t i = 0; i < stats_target_size; ++i)
                                                                                      +
                                                                                      931  res *= std::exp(
                                                                                      +
                                                                                      932  vec_inner_prod(
                                                                                      +
                                                                                      933  &stats_target[i][0u],
                                                                                      +
                                                                                      934  &params[0u],
                                                                                      +
                                                                                      935  params.size()
                                                                                      +
                                                                                      936  ) BARRY_SAFE_EXP) /
                                                                                      +
                                                                                      937  normalizing_constants[arrays2support[i]];
                                                                                      +
                                                                                      938 
                                                                                      +
                                                                                      939  }
                                                                                      +
                                                                                      940 
                                                                                      +
                                                                                      941  return res;
                                                                                      +
                                                                                      942 
                                                                                      +
                                                                                      943 }
                                                                                      +
                                                                                      944 
                                                                                      +
                                                                                      945 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      946 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_norm_const(
                                                                                      +
                                                                                      947  const std::vector<double> & params,
                                                                                      +
                                                                                      948  const size_t & i,
                                                                                      +
                                                                                      949  bool as_log
                                                                                      +
                                                                                      950 ) {
                                                                                      +
                                                                                      951 
                                                                                      +
                                                                                      952  // Checking if the index exists
                                                                                      +
                                                                                      953  if (i >= arrays2support.size())
                                                                                      954  throw std::range_error("The requested support is out of range");
                                                                                      955 
                                                                                      -
                                                                                      956  const auto & S = stats_support[arrays2support[i]];
                                                                                      -
                                                                                      957 
                                                                                      -
                                                                                      958  size_t k = nterms();
                                                                                      -
                                                                                      959  size_t nunique = S.size() / (k + 1u);
                                                                                      -
                                                                                      960 
                                                                                      -
                                                                                      961  for (size_t l = 0u; l < nunique; ++l)
                                                                                      -
                                                                                      962  {
                                                                                      -
                                                                                      963 
                                                                                      -
                                                                                      964  printf_barry("% 5li ", l);
                                                                                      -
                                                                                      965 
                                                                                      -
                                                                                      966  printf_barry("counts: %.0f motif: ", S[l * (k + 1u)]);
                                                                                      -
                                                                                      967 
                                                                                      -
                                                                                      968  for (size_t j = 0u; j < k; ++j)
                                                                                      -
                                                                                      969  printf_barry("%.2f, ", S[l * (k + 1) + j + 1]);
                                                                                      -
                                                                                      970 
                                                                                      -
                                                                                      971  printf_barry("\n");
                                                                                      -
                                                                                      972 
                                                                                      +
                                                                                      956  const auto id = arrays2support[i];
                                                                                      +
                                                                                      957 
                                                                                      +
                                                                                      958  // Checking if we have updated the normalizing constant or not
                                                                                      +
                                                                                      959  if (!first_calc_done[id] || !vec_equal_approx(params, params_last[id]) )
                                                                                      +
                                                                                      960  {
                                                                                      +
                                                                                      961 
                                                                                      +
                                                                                      962  first_calc_done[id] = true;
                                                                                      +
                                                                                      963 
                                                                                      +
                                                                                      964  size_t k = params.size() + 1u;
                                                                                      +
                                                                                      965  size_t n = stats_support[id].size() / k;
                                                                                      +
                                                                                      966 
                                                                                      +
                                                                                      967  normalizing_constants[id] = update_normalizing_constant(
                                                                                      +
                                                                                      968  &params[0u], &stats_support[id][0u], k, n
                                                                                      +
                                                                                      969  );
                                                                                      +
                                                                                      970 
                                                                                      +
                                                                                      971  params_last[id] = params;
                                                                                      +
                                                                                      972 
                                                                                      973  }
                                                                                      974 
                                                                                      -
                                                                                      975  return;
                                                                                      -
                                                                                      976 
                                                                                      -
                                                                                      977 }
                                                                                      -
                                                                                      978 
                                                                                      -
                                                                                      979 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      -
                                                                                      980 inline void Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::print() const
                                                                                      -
                                                                                      981 {
                                                                                      -
                                                                                      982 
                                                                                      -
                                                                                      983  // Relevant information:
                                                                                      -
                                                                                      984  // - Number of arrays involved
                                                                                      -
                                                                                      985  // - Size of the support
                                                                                      -
                                                                                      986  // - Terms involved
                                                                                      -
                                                                                      987 
                                                                                      -
                                                                                      988  int min_v = std::numeric_limits<int>::max();
                                                                                      -
                                                                                      989  int max_v = 0;
                                                                                      +
                                                                                      975  return as_log ?
                                                                                      +
                                                                                      976  std::log(normalizing_constants[id]) :
                                                                                      +
                                                                                      977  normalizing_constants[id]
                                                                                      +
                                                                                      978  ;
                                                                                      +
                                                                                      979 
                                                                                      +
                                                                                      980 }
                                                                                      +
                                                                                      981 
                                                                                      +
                                                                                      982 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      983 inline const std::vector< Array_Type > * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_pset(
                                                                                      +
                                                                                      984  const size_t & i
                                                                                      +
                                                                                      985 ) {
                                                                                      +
                                                                                      986 
                                                                                      +
                                                                                      987  if (i >= arrays2support.size())
                                                                                      +
                                                                                      988  throw std::range_error("The requested support is out of range");
                                                                                      +
                                                                                      989 
                                                                                      990 
                                                                                      -
                                                                                      991  for (const auto & stat : this->stats_support)
                                                                                      -
                                                                                      992  {
                                                                                      -
                                                                                      993 
                                                                                      -
                                                                                      994  if (static_cast<int>(stat.size()) > max_v)
                                                                                      -
                                                                                      995  max_v = static_cast<int>(stat.size());
                                                                                      -
                                                                                      996 
                                                                                      -
                                                                                      997  if (static_cast<int>(stat.size()) < min_v)
                                                                                      -
                                                                                      998  min_v = static_cast<int>(stat.size());
                                                                                      +
                                                                                      991  return &pset_arrays[arrays2support[i]];
                                                                                      +
                                                                                      992 
                                                                                      +
                                                                                      993 }
                                                                                      +
                                                                                      994 
                                                                                      +
                                                                                      995 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      996 inline const std::vector< double > * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_pset_stats(
                                                                                      +
                                                                                      997  const size_t & i
                                                                                      +
                                                                                      998 ) {
                                                                                      999 
                                                                                      -
                                                                                      1000  }
                                                                                      -
                                                                                      1001 
                                                                                      -
                                                                                      1002  // The vectors in the support reflec the size of nterms x entries
                                                                                      -
                                                                                      1003  max_v /= static_cast<int>(nterms() + 1);
                                                                                      -
                                                                                      1004  min_v /= static_cast<int>(nterms() + 1);
                                                                                      -
                                                                                      1005 
                                                                                      -
                                                                                      1006  printf_barry("Num. of Arrays : %li\n", this->size());
                                                                                      -
                                                                                      1007  printf_barry("Support size : %li\n", this->size_unique());
                                                                                      -
                                                                                      1008  printf_barry("Support size range : [%i, %i]\n", min_v, max_v);
                                                                                      -
                                                                                      1009  printf_barry("Transform. Fun. : %s\n", transform_model_fun ? "yes": "no");
                                                                                      -
                                                                                      1010  printf_barry("Model terms (%li) :\n", this->nterms());
                                                                                      -
                                                                                      1011  for (auto & cn : this->colnames())
                                                                                      -
                                                                                      1012  {
                                                                                      -
                                                                                      1013  printf_barry(" - %s\n", cn.c_str());
                                                                                      -
                                                                                      1014  }
                                                                                      +
                                                                                      1000  if (i >= arrays2support.size())
                                                                                      +
                                                                                      1001  throw std::range_error("The requested support is out of range");
                                                                                      +
                                                                                      1002 
                                                                                      +
                                                                                      1003  return &pset_stats[arrays2support[i]];
                                                                                      +
                                                                                      1004 
                                                                                      +
                                                                                      1005 }
                                                                                      +
                                                                                      1006 
                                                                                      +
                                                                                      1007 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1008 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: print_stats(size_t i) const
                                                                                      +
                                                                                      1009 {
                                                                                      +
                                                                                      1010 
                                                                                      +
                                                                                      1011  if (i >= arrays2support.size())
                                                                                      +
                                                                                      1012  throw std::range_error("The requested support is out of range");
                                                                                      +
                                                                                      1013 
                                                                                      +
                                                                                      1014  const auto & S = stats_support[arrays2support[i]];
                                                                                      1015 
                                                                                      -
                                                                                      1016  if (this->nrules() > 0u)
                                                                                      -
                                                                                      1017  {
                                                                                      -
                                                                                      1018  printf_barry("Model rules (%li) :\n", this->nrules());
                                                                                      -
                                                                                      1019 
                                                                                      -
                                                                                      1020  for (auto & rn : rules->get_names())
                                                                                      -
                                                                                      1021  {
                                                                                      -
                                                                                      1022  printf_barry(" - %s\n", rn.c_str());
                                                                                      -
                                                                                      1023  }
                                                                                      -
                                                                                      1024  }
                                                                                      -
                                                                                      1025 
                                                                                      -
                                                                                      1026  if (this->nrules_dyn() > 0u)
                                                                                      -
                                                                                      1027  {
                                                                                      -
                                                                                      1028  printf_barry("Model rules dyn (%li):\n", this->nrules_dyn());
                                                                                      -
                                                                                      1029 
                                                                                      -
                                                                                      1030  for (auto & rn : rules_dyn->get_names())
                                                                                      -
                                                                                      1031  {
                                                                                      -
                                                                                      1032  printf_barry(" - %s\n", rn.c_str());
                                                                                      -
                                                                                      1033  }
                                                                                      -
                                                                                      1034  }
                                                                                      -
                                                                                      1035 
                                                                                      -
                                                                                      1036  return;
                                                                                      -
                                                                                      1037 
                                                                                      -
                                                                                      1038 }
                                                                                      -
                                                                                      1039 
                                                                                      -
                                                                                      1040 MODEL_TEMPLATE(size_t, size)() const noexcept
                                                                                      -
                                                                                      1041 {
                                                                                      -
                                                                                      1042  // INITIALIZED()
                                                                                      -
                                                                                      1043  return this->stats_target.size();
                                                                                      -
                                                                                      1044 
                                                                                      -
                                                                                      1045 }
                                                                                      -
                                                                                      1046 
                                                                                      -
                                                                                      1047 MODEL_TEMPLATE(size_t, size_unique)() const noexcept
                                                                                      -
                                                                                      1048 {
                                                                                      -
                                                                                      1049 
                                                                                      -
                                                                                      1050  // INITIALIZED()
                                                                                      -
                                                                                      1051  return this->stats_support.size();
                                                                                      -
                                                                                      1052 
                                                                                      -
                                                                                      1053 }
                                                                                      -
                                                                                      1054 
                                                                                      -
                                                                                      1055 MODEL_TEMPLATE(size_t, nterms)() const noexcept
                                                                                      -
                                                                                      1056 {
                                                                                      +
                                                                                      1016  size_t k = nterms();
                                                                                      +
                                                                                      1017  size_t nunique = S.size() / (k + 1u);
                                                                                      +
                                                                                      1018 
                                                                                      +
                                                                                      1019  for (size_t l = 0u; l < nunique; ++l)
                                                                                      +
                                                                                      1020  {
                                                                                      +
                                                                                      1021 
                                                                                      +
                                                                                      1022  printf_barry("% 5li ", l);
                                                                                      +
                                                                                      1023 
                                                                                      +
                                                                                      1024  printf_barry("counts: %.0f motif: ", S[l * (k + 1u)]);
                                                                                      +
                                                                                      1025 
                                                                                      +
                                                                                      1026  for (size_t j = 0u; j < k; ++j)
                                                                                      +
                                                                                      1027  printf_barry("%.2f, ", S[l * (k + 1) + j + 1]);
                                                                                      +
                                                                                      1028 
                                                                                      +
                                                                                      1029  printf_barry("\n");
                                                                                      +
                                                                                      1030 
                                                                                      +
                                                                                      1031  }
                                                                                      +
                                                                                      1032 
                                                                                      +
                                                                                      1033  return;
                                                                                      +
                                                                                      1034 
                                                                                      +
                                                                                      1035 }
                                                                                      +
                                                                                      1036 
                                                                                      +
                                                                                      1037 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1038 inline void Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::print() const
                                                                                      +
                                                                                      1039 {
                                                                                      +
                                                                                      1040 
                                                                                      +
                                                                                      1041  // Relevant information:
                                                                                      +
                                                                                      1042  // - Number of arrays involved
                                                                                      +
                                                                                      1043  // - Size of the support
                                                                                      +
                                                                                      1044  // - Terms involved
                                                                                      +
                                                                                      1045 
                                                                                      +
                                                                                      1046  int min_v = std::numeric_limits<int>::max();
                                                                                      +
                                                                                      1047  int max_v = 0;
                                                                                      +
                                                                                      1048 
                                                                                      +
                                                                                      1049  for (const auto & stat : this->stats_support)
                                                                                      +
                                                                                      1050  {
                                                                                      +
                                                                                      1051 
                                                                                      +
                                                                                      1052  if (static_cast<int>(stat.size()) > max_v)
                                                                                      +
                                                                                      1053  max_v = static_cast<int>(stat.size());
                                                                                      +
                                                                                      1054 
                                                                                      +
                                                                                      1055  if (static_cast<int>(stat.size()) < min_v)
                                                                                      +
                                                                                      1056  min_v = static_cast<int>(stat.size());
                                                                                      1057 
                                                                                      -
                                                                                      1058  if (transform_model_fun)
                                                                                      -
                                                                                      1059  return transform_model_term_names.size();
                                                                                      -
                                                                                      1060  else
                                                                                      -
                                                                                      1061  return this->counters->size();
                                                                                      -
                                                                                      1062 
                                                                                      -
                                                                                      1063 }
                                                                                      -
                                                                                      1064 
                                                                                      -
                                                                                      1065 MODEL_TEMPLATE(size_t, nrules)() const noexcept
                                                                                      -
                                                                                      1066 {
                                                                                      -
                                                                                      1067 
                                                                                      -
                                                                                      1068  return this->rules->size();
                                                                                      -
                                                                                      1069 
                                                                                      -
                                                                                      1070 }
                                                                                      -
                                                                                      1071 
                                                                                      -
                                                                                      1072 MODEL_TEMPLATE(size_t, nrules_dyn)() const noexcept
                                                                                      -
                                                                                      1073 {
                                                                                      -
                                                                                      1074 
                                                                                      -
                                                                                      1075  return this->rules_dyn->size();
                                                                                      -
                                                                                      1076 
                                                                                      -
                                                                                      1077 }
                                                                                      -
                                                                                      1078 
                                                                                      -
                                                                                      1079 MODEL_TEMPLATE(size_t, support_size)() const noexcept
                                                                                      -
                                                                                      1080 {
                                                                                      -
                                                                                      1081 
                                                                                      -
                                                                                      1082  // INITIALIZED()
                                                                                      -
                                                                                      1083  size_t tot = 0u;
                                                                                      -
                                                                                      1084  for (auto& a : stats_support)
                                                                                      -
                                                                                      1085  tot += a.size();
                                                                                      -
                                                                                      1086 
                                                                                      -
                                                                                      1087  return tot;
                                                                                      -
                                                                                      1088 
                                                                                      -
                                                                                      1089 }
                                                                                      -
                                                                                      1090 
                                                                                      -
                                                                                      1091 MODEL_TEMPLATE(std::vector< std::string >, colnames)() const
                                                                                      -
                                                                                      1092 {
                                                                                      -
                                                                                      1093 
                                                                                      -
                                                                                      1094  if (transform_model_fun)
                                                                                      -
                                                                                      1095  return transform_model_term_names;
                                                                                      -
                                                                                      1096  else
                                                                                      -
                                                                                      1097  return counters->get_names();
                                                                                      -
                                                                                      1098 
                                                                                      -
                                                                                      1099 }
                                                                                      -
                                                                                      1100 
                                                                                      -
                                                                                      1101 template <
                                                                                      -
                                                                                      1102  typename Array_Type,
                                                                                      -
                                                                                      1103  typename Data_Counter_Type,
                                                                                      -
                                                                                      1104  typename Data_Rule_Type,
                                                                                      -
                                                                                      1105  typename Data_Rule_Dyn_Type
                                                                                      -
                                                                                      1106  >
                                                                                      -
                                                                                      1107 inline Array_Type Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::sample(
                                                                                      -
                                                                                      1108  const size_t & i,
                                                                                      -
                                                                                      1109  const std::vector<double> & params
                                                                                      -
                                                                                      1110 ) {
                                                                                      -
                                                                                      1111 
                                                                                      -
                                                                                      1112  // Are we recording this?
                                                                                      -
                                                                                      1113  if (!this->with_pset)
                                                                                      -
                                                                                      1114  throw std::logic_error("Sampling is only available when store_pset() is active.");
                                                                                      -
                                                                                      1115 
                                                                                      -
                                                                                      1116  if (i >= arrays2support.size())
                                                                                      -
                                                                                      1117  throw std::range_error("The requested support is out of range");
                                                                                      +
                                                                                      1058  }
                                                                                      +
                                                                                      1059 
                                                                                      +
                                                                                      1060  // The vectors in the support reflec the size of nterms x entries
                                                                                      +
                                                                                      1061  max_v /= static_cast<int>(nterms() + 1);
                                                                                      +
                                                                                      1062  min_v /= static_cast<int>(nterms() + 1);
                                                                                      +
                                                                                      1063 
                                                                                      +
                                                                                      1064  printf_barry("Num. of Arrays : %li\n", this->size());
                                                                                      +
                                                                                      1065  printf_barry("Support size : %li\n", this->size_unique());
                                                                                      +
                                                                                      1066  printf_barry("Support size range : [%i, %i]\n", min_v, max_v);
                                                                                      +
                                                                                      1067  printf_barry("Transform. Fun. : %s\n", transform_model_fun ? "yes": "no");
                                                                                      +
                                                                                      1068  printf_barry("Model terms (%li) :\n", this->nterms());
                                                                                      +
                                                                                      1069  for (auto & cn : this->colnames())
                                                                                      +
                                                                                      1070  {
                                                                                      +
                                                                                      1071  printf_barry(" - %s\n", cn.c_str());
                                                                                      +
                                                                                      1072  }
                                                                                      +
                                                                                      1073 
                                                                                      +
                                                                                      1074  if (this->nrules() > 0u)
                                                                                      +
                                                                                      1075  {
                                                                                      +
                                                                                      1076  printf_barry("Model rules (%li) :\n", this->nrules());
                                                                                      +
                                                                                      1077 
                                                                                      +
                                                                                      1078  for (auto & rn : rules->get_names())
                                                                                      +
                                                                                      1079  {
                                                                                      +
                                                                                      1080  printf_barry(" - %s\n", rn.c_str());
                                                                                      +
                                                                                      1081  }
                                                                                      +
                                                                                      1082  }
                                                                                      +
                                                                                      1083 
                                                                                      +
                                                                                      1084  if (this->nrules_dyn() > 0u)
                                                                                      +
                                                                                      1085  {
                                                                                      +
                                                                                      1086  printf_barry("Model rules dyn (%li):\n", this->nrules_dyn());
                                                                                      +
                                                                                      1087 
                                                                                      +
                                                                                      1088  for (auto & rn : rules_dyn->get_names())
                                                                                      +
                                                                                      1089  {
                                                                                      +
                                                                                      1090  printf_barry(" - %s\n", rn.c_str());
                                                                                      +
                                                                                      1091  }
                                                                                      +
                                                                                      1092  }
                                                                                      +
                                                                                      1093 
                                                                                      +
                                                                                      1094  return;
                                                                                      +
                                                                                      1095 
                                                                                      +
                                                                                      1096 }
                                                                                      +
                                                                                      1097 
                                                                                      +
                                                                                      1098 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1099 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: size() const noexcept
                                                                                      +
                                                                                      1100 {
                                                                                      +
                                                                                      1101  // INITIALIZED()
                                                                                      +
                                                                                      1102  return this->stats_target.size();
                                                                                      +
                                                                                      1103 
                                                                                      +
                                                                                      1104 }
                                                                                      +
                                                                                      1105 
                                                                                      +
                                                                                      1106 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1107 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: size_unique() const noexcept
                                                                                      +
                                                                                      1108 {
                                                                                      +
                                                                                      1109 
                                                                                      +
                                                                                      1110  // INITIALIZED()
                                                                                      +
                                                                                      1111  return this->stats_support.size();
                                                                                      +
                                                                                      1112 
                                                                                      +
                                                                                      1113 }
                                                                                      +
                                                                                      1114 
                                                                                      +
                                                                                      1115 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1116 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: nterms() const noexcept
                                                                                      +
                                                                                      1117 {
                                                                                      1118 
                                                                                      -
                                                                                      1119  // Getting the index
                                                                                      -
                                                                                      1120  size_t a = arrays2support[i];
                                                                                      -
                                                                                      1121 
                                                                                      -
                                                                                      1122  // Generating a random
                                                                                      -
                                                                                      1123  std::uniform_real_distribution<> urand(0, 1);
                                                                                      -
                                                                                      1124  double r = urand(*rengine);
                                                                                      -
                                                                                      1125  double cumprob = 0.0;
                                                                                      -
                                                                                      1126 
                                                                                      -
                                                                                      1127  size_t k = params.size();
                                                                                      -
                                                                                      1128 
                                                                                      -
                                                                                      1129  // Sampling an array
                                                                                      -
                                                                                      1130  size_t j = 0u;
                                                                                      -
                                                                                      1131  std::vector< double > & probs = pset_probs[a];
                                                                                      -
                                                                                      1132  if ((probs.size() > 0u) && (vec_equal_approx(params, params_last[a])))
                                                                                      -
                                                                                      1133  // If precomputed, then no need to recalc support
                                                                                      -
                                                                                      1134  {
                                                                                      -
                                                                                      1135 
                                                                                      -
                                                                                      1136  while (cumprob < r)
                                                                                      -
                                                                                      1137  cumprob += probs[j++];
                                                                                      -
                                                                                      1138 
                                                                                      -
                                                                                      1139  if (j > 0u)
                                                                                      -
                                                                                      1140  j--;
                                                                                      +
                                                                                      1119  if (transform_model_fun)
                                                                                      +
                                                                                      1120  return transform_model_term_names.size();
                                                                                      +
                                                                                      1121  else
                                                                                      +
                                                                                      1122  return this->counters->size();
                                                                                      +
                                                                                      1123 
                                                                                      +
                                                                                      1124 }
                                                                                      +
                                                                                      1125 
                                                                                      +
                                                                                      1126 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1127 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: nrules() const noexcept
                                                                                      +
                                                                                      1128 {
                                                                                      +
                                                                                      1129 
                                                                                      +
                                                                                      1130  return this->rules->size();
                                                                                      +
                                                                                      1131 
                                                                                      +
                                                                                      1132 }
                                                                                      +
                                                                                      1133 
                                                                                      +
                                                                                      1134 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1135 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: nrules_dyn() const noexcept
                                                                                      +
                                                                                      1136 {
                                                                                      +
                                                                                      1137 
                                                                                      +
                                                                                      1138  return this->rules_dyn->size();
                                                                                      +
                                                                                      1139 
                                                                                      +
                                                                                      1140 }
                                                                                      1141 
                                                                                      -
                                                                                      1142  } else {
                                                                                      -
                                                                                      1143 
                                                                                      -
                                                                                      1144  probs.resize(pset_arrays[a].size());
                                                                                      -
                                                                                      1145  std::vector< double > temp_stats(params.size());
                                                                                      -
                                                                                      1146  const std::vector< double > & stats = pset_stats[a];
                                                                                      -
                                                                                      1147 
                                                                                      -
                                                                                      1148  int i_matches = -1;
                                                                                      -
                                                                                      1149  for (size_t array = 0u; array < probs.size(); ++array)
                                                                                      -
                                                                                      1150  {
                                                                                      -
                                                                                      1151 
                                                                                      -
                                                                                      1152  // Filling out the parameters
                                                                                      -
                                                                                      1153  for (auto p = 0u; p < params.size(); ++p)
                                                                                      -
                                                                                      1154  temp_stats[p] = stats[array * k + p];
                                                                                      -
                                                                                      1155 
                                                                                      -
                                                                                      1156  probs[array] = this->likelihood(params, temp_stats, i, false);
                                                                                      -
                                                                                      1157  cumprob += probs[array];
                                                                                      -
                                                                                      1158 
                                                                                      -
                                                                                      1159  if (i_matches == -1 && cumprob >= r)
                                                                                      -
                                                                                      1160  i_matches = array;
                                                                                      -
                                                                                      1161  }
                                                                                      -
                                                                                      1162 
                                                                                      -
                                                                                      1163  #ifdef BARRY_DEBUG
                                                                                      -
                                                                                      1164  if (i_matches < 0)
                                                                                      -
                                                                                      1165  throw std::logic_error(
                                                                                      -
                                                                                      1166  std::string(
                                                                                      -
                                                                                      1167  "Something went wrong when sampling from a different set of.") +
                                                                                      -
                                                                                      1168  std::string("parameters. Please report this bug: ") +
                                                                                      -
                                                                                      1169  std::string(" cumprob: ") + std::to_string(cumprob) +
                                                                                      -
                                                                                      1170  std::string(" r: ") + std::to_string(r)
                                                                                      -
                                                                                      1171  );
                                                                                      -
                                                                                      1172  #endif
                                                                                      -
                                                                                      1173 
                                                                                      -
                                                                                      1174  j = i_matches;
                                                                                      -
                                                                                      1175 
                                                                                      -
                                                                                      1176  }
                                                                                      -
                                                                                      1177 
                                                                                      -
                                                                                      1178  #ifdef BARRY_DEBUG
                                                                                      -
                                                                                      1179  return this->pset_arrays.at(a).at(j);
                                                                                      -
                                                                                      1180  #else
                                                                                      -
                                                                                      1181  return this->pset_arrays[a][j];
                                                                                      -
                                                                                      1182  #endif
                                                                                      +
                                                                                      1142 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1143 inline size_t Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: support_size() const noexcept
                                                                                      +
                                                                                      1144 {
                                                                                      +
                                                                                      1145 
                                                                                      +
                                                                                      1146  // INITIALIZED()
                                                                                      +
                                                                                      1147  size_t tot = 0u;
                                                                                      +
                                                                                      1148  for (auto& a : stats_support)
                                                                                      +
                                                                                      1149  tot += a.size();
                                                                                      +
                                                                                      1150 
                                                                                      +
                                                                                      1151  return tot;
                                                                                      +
                                                                                      1152 
                                                                                      +
                                                                                      1153 }
                                                                                      +
                                                                                      1154 
                                                                                      +
                                                                                      1155 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1156 inline std::vector< std::string > Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: colnames() const
                                                                                      +
                                                                                      1157 {
                                                                                      +
                                                                                      1158 
                                                                                      +
                                                                                      1159  if (transform_model_fun)
                                                                                      +
                                                                                      1160  return transform_model_term_names;
                                                                                      +
                                                                                      1161  else
                                                                                      +
                                                                                      1162  return counters->get_names();
                                                                                      +
                                                                                      1163 
                                                                                      +
                                                                                      1164 }
                                                                                      +
                                                                                      1165 
                                                                                      +
                                                                                      1166 template <
                                                                                      +
                                                                                      1167  typename Array_Type,
                                                                                      +
                                                                                      1168  typename Data_Counter_Type,
                                                                                      +
                                                                                      1169  typename Data_Rule_Type,
                                                                                      +
                                                                                      1170  typename Data_Rule_Dyn_Type
                                                                                      +
                                                                                      1171  >
                                                                                      +
                                                                                      1172 inline Array_Type Model<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::sample(
                                                                                      +
                                                                                      1173  const size_t & i,
                                                                                      +
                                                                                      1174  const std::vector<double> & params
                                                                                      +
                                                                                      1175 ) {
                                                                                      +
                                                                                      1176 
                                                                                      +
                                                                                      1177  // Are we recording this?
                                                                                      +
                                                                                      1178  if (!this->with_pset)
                                                                                      +
                                                                                      1179  throw std::logic_error("Sampling is only available when store_pset() is active.");
                                                                                      +
                                                                                      1180 
                                                                                      +
                                                                                      1181  if (i >= arrays2support.size())
                                                                                      +
                                                                                      1182  throw std::range_error("The requested support is out of range");
                                                                                      1183 
                                                                                      -
                                                                                      1184 }
                                                                                      -
                                                                                      1185 
                                                                                      -
                                                                                      1186 MODEL_TEMPLATE(Array_Type, sample)(
                                                                                      -
                                                                                      1187  const Array_Type & Array_,
                                                                                      -
                                                                                      1188  const std::vector<double> & params
                                                                                      -
                                                                                      1189 ) {
                                                                                      -
                                                                                      1190 
                                                                                      -
                                                                                      1191  // Are we recording this?
                                                                                      -
                                                                                      1192  if (!this->with_pset)
                                                                                      -
                                                                                      1193  throw std::logic_error("Sampling is only available when store_pset() is active.");
                                                                                      -
                                                                                      1194 
                                                                                      -
                                                                                      1195  size_t i;
                                                                                      -
                                                                                      1196 
                                                                                      -
                                                                                      1197  // If the data hasn't been analyzed earlier, then we need to compute
                                                                                      -
                                                                                      1198  // the support
                                                                                      -
                                                                                      1199  std::vector< double > key = counters->gen_hash(Array_);
                                                                                      -
                                                                                      1200  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                      -
                                                                                      1201  if (locator == keys2support.end())
                                                                                      -
                                                                                      1202  {
                                                                                      -
                                                                                      1203  // throw std::out_of_range("Sampling from an array that has no support in the model.");
                                                                                      -
                                                                                      1204 
                                                                                      -
                                                                                      1205  // Adding to the map
                                                                                      -
                                                                                      1206  keys2support[key] = stats_support.size();
                                                                                      -
                                                                                      1207  stats_support_n_arrays.push_back(1u); // How many elements now
                                                                                      -
                                                                                      1208  arrays2support.push_back(stats_support.size()); // Map of the array id to the support
                                                                                      -
                                                                                      1209 
                                                                                      -
                                                                                      1210  // Computing support using the counters included in the model
                                                                                      -
                                                                                      1211  support_fun.reset_array(Array_);
                                                                                      -
                                                                                      1212 
                                                                                      -
                                                                                      1215  if (with_pset)
                                                                                      -
                                                                                      1216  {
                                                                                      -
                                                                                      1217 
                                                                                      -
                                                                                      1218  // Making space for storing the support
                                                                                      -
                                                                                      1219  pset_arrays.resize(pset_arrays.size() + 1u);
                                                                                      -
                                                                                      1220  pset_stats.resize(pset_stats.size() + 1u);
                                                                                      -
                                                                                      1221  pset_probs.resize(pset_probs.size() + 1u);
                                                                                      -
                                                                                      1222 
                                                                                      -
                                                                                      1223  try
                                                                                      -
                                                                                      1224  {
                                                                                      -
                                                                                      1225 
                                                                                      -
                                                                                      1226  support_fun.calc(
                                                                                      -
                                                                                      1227  &(pset_arrays[pset_arrays.size() - 1u]),
                                                                                      -
                                                                                      1228  &(pset_stats[pset_stats.size() - 1u])
                                                                                      -
                                                                                      1229  );
                                                                                      -
                                                                                      1230 
                                                                                      -
                                                                                      1231  }
                                                                                      -
                                                                                      1232  catch (const std::exception& e)
                                                                                      -
                                                                                      1233  {
                                                                                      -
                                                                                      1234 
                                                                                      -
                                                                                      1235  printf_barry(
                                                                                      -
                                                                                      1236  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                      -
                                                                                      1237  );
                                                                                      -
                                                                                      1238  printf_barry("with error %s\n", e.what());
                                                                                      -
                                                                                      1239  throw std::logic_error("");
                                                                                      -
                                                                                      1240 
                                                                                      -
                                                                                      1241  }
                                                                                      -
                                                                                      1242 
                                                                                      -
                                                                                      1243  }
                                                                                      -
                                                                                      1244  else
                                                                                      -
                                                                                      1245  {
                                                                                      -
                                                                                      1246  support_fun.calc();
                                                                                      -
                                                                                      1247  }
                                                                                      -
                                                                                      1248 
                                                                                      -
                                                                                      1249  if (transform_model_fun)
                                                                                      -
                                                                                      1250  {
                                                                                      -
                                                                                      1251  auto tmpsupport = support_fun.get_counts();
                                                                                      -
                                                                                      1252  size_t k = counter_fun.size();
                                                                                      -
                                                                                      1253  size_t n = tmpsupport.size() / (k + 1);
                                                                                      -
                                                                                      1254 
                                                                                      -
                                                                                      1255  std::vector< double > s_new(0u);
                                                                                      -
                                                                                      1256  s_new.reserve(tmpsupport.size());
                                                                                      -
                                                                                      1257 
                                                                                      -
                                                                                      1258  for (size_t i = 0u; i < n; ++i)
                                                                                      -
                                                                                      1259  {
                                                                                      +
                                                                                      1184  // Getting the index
                                                                                      +
                                                                                      1185  size_t a = arrays2support[i];
                                                                                      +
                                                                                      1186 
                                                                                      +
                                                                                      1187  // Generating a random
                                                                                      +
                                                                                      1188  std::uniform_real_distribution<> urand(0, 1);
                                                                                      +
                                                                                      1189  double r = urand(*rengine);
                                                                                      +
                                                                                      1190  double cumprob = 0.0;
                                                                                      +
                                                                                      1191 
                                                                                      +
                                                                                      1192  size_t k = params.size();
                                                                                      +
                                                                                      1193 
                                                                                      +
                                                                                      1194  // Sampling an array
                                                                                      +
                                                                                      1195  size_t j = 0u;
                                                                                      +
                                                                                      1196  std::vector< double > & probs = pset_probs[a];
                                                                                      +
                                                                                      1197  if ((probs.size() > 0u) && (vec_equal_approx(params, params_last[a])))
                                                                                      +
                                                                                      1198  // If precomputed, then no need to recalc support
                                                                                      +
                                                                                      1199  {
                                                                                      +
                                                                                      1200 
                                                                                      +
                                                                                      1201  while (cumprob < r)
                                                                                      +
                                                                                      1202  cumprob += probs[j++];
                                                                                      +
                                                                                      1203 
                                                                                      +
                                                                                      1204  if (j > 0u)
                                                                                      +
                                                                                      1205  j--;
                                                                                      +
                                                                                      1206 
                                                                                      +
                                                                                      1207  } else {
                                                                                      +
                                                                                      1208 
                                                                                      +
                                                                                      1209  probs.resize(pset_arrays[a].size());
                                                                                      +
                                                                                      1210  std::vector< double > temp_stats(params.size());
                                                                                      +
                                                                                      1211  const std::vector< double > & stats = pset_stats[a];
                                                                                      +
                                                                                      1212 
                                                                                      +
                                                                                      1213  int i_matches = -1;
                                                                                      +
                                                                                      1214  for (size_t array = 0u; array < probs.size(); ++array)
                                                                                      +
                                                                                      1215  {
                                                                                      +
                                                                                      1216 
                                                                                      +
                                                                                      1217  // Filling out the parameters
                                                                                      +
                                                                                      1218  for (auto p = 0u; p < params.size(); ++p)
                                                                                      +
                                                                                      1219  temp_stats[p] = stats[array * k + p];
                                                                                      +
                                                                                      1220 
                                                                                      +
                                                                                      1221  probs[array] = this->likelihood(params, temp_stats, i, false);
                                                                                      +
                                                                                      1222  cumprob += probs[array];
                                                                                      +
                                                                                      1223 
                                                                                      +
                                                                                      1224  if (i_matches == -1 && cumprob >= r)
                                                                                      +
                                                                                      1225  i_matches = array;
                                                                                      +
                                                                                      1226  }
                                                                                      +
                                                                                      1227 
                                                                                      +
                                                                                      1228  #ifdef BARRY_DEBUG
                                                                                      +
                                                                                      1229  if (i_matches < 0)
                                                                                      +
                                                                                      1230  throw std::logic_error(
                                                                                      +
                                                                                      1231  std::string(
                                                                                      +
                                                                                      1232  "Something went wrong when sampling from a different set of.") +
                                                                                      +
                                                                                      1233  std::string("parameters. Please report this bug: ") +
                                                                                      +
                                                                                      1234  std::string(" cumprob: ") + std::to_string(cumprob) +
                                                                                      +
                                                                                      1235  std::string(" r: ") + std::to_string(r)
                                                                                      +
                                                                                      1236  );
                                                                                      +
                                                                                      1237  #endif
                                                                                      +
                                                                                      1238 
                                                                                      +
                                                                                      1239  j = i_matches;
                                                                                      +
                                                                                      1240 
                                                                                      +
                                                                                      1241  }
                                                                                      +
                                                                                      1242 
                                                                                      +
                                                                                      1243  #ifdef BARRY_DEBUG
                                                                                      +
                                                                                      1244  return this->pset_arrays.at(a).at(j);
                                                                                      +
                                                                                      1245  #else
                                                                                      +
                                                                                      1246  return this->pset_arrays[a][j];
                                                                                      +
                                                                                      1247  #endif
                                                                                      +
                                                                                      1248 
                                                                                      +
                                                                                      1249 }
                                                                                      +
                                                                                      1250 
                                                                                      +
                                                                                      1251 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1252 inline Array_Type Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: sample(
                                                                                      +
                                                                                      1253  const Array_Type & Array_,
                                                                                      +
                                                                                      1254  const std::vector<double> & params
                                                                                      +
                                                                                      1255 ) {
                                                                                      +
                                                                                      1256 
                                                                                      +
                                                                                      1257  // Are we recording this?
                                                                                      +
                                                                                      1258  if (!this->with_pset)
                                                                                      +
                                                                                      1259  throw std::logic_error("Sampling is only available when store_pset() is active.");
                                                                                      1260 
                                                                                      -
                                                                                      1261  // Appending size
                                                                                      -
                                                                                      1262  s_new.push_back(tmpsupport[i * (k + 1u)]);
                                                                                      -
                                                                                      1263 
                                                                                      -
                                                                                      1264  // Applying transformation and adding to the new set
                                                                                      -
                                                                                      1265  auto res = transform_model_fun(&tmpsupport[i * (k + 1u) + 1u], k);
                                                                                      -
                                                                                      1266  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                      -
                                                                                      1267 
                                                                                      -
                                                                                      1268  }
                                                                                      -
                                                                                      1269 
                                                                                      -
                                                                                      1270  stats_support.push_back(s_new);
                                                                                      -
                                                                                      1271 
                                                                                      -
                                                                                      1272  } else
                                                                                      -
                                                                                      1273  stats_support.push_back(support_fun.get_counts());
                                                                                      -
                                                                                      1274 
                                                                                      -
                                                                                      1275  // Making room for the previous parameters. This will be used to check if
                                                                                      -
                                                                                      1276  // the normalizing constant has been updated or not.
                                                                                      -
                                                                                      1277  params_last.push_back(stats_target[0u]);
                                                                                      -
                                                                                      1278  normalizing_constants.push_back(0.0);
                                                                                      -
                                                                                      1279  first_calc_done.push_back(false);
                                                                                      -
                                                                                      1280 
                                                                                      -
                                                                                      1281  i = arrays2support.size() - 1u;
                                                                                      -
                                                                                      1282  } else
                                                                                      -
                                                                                      1283  // Retrieving the corresponding position in the support
                                                                                      -
                                                                                      1284  i = locator->second;
                                                                                      -
                                                                                      1285 
                                                                                      -
                                                                                      1286  // Getting the index
                                                                                      -
                                                                                      1287  size_t a = arrays2support[i];
                                                                                      -
                                                                                      1288 
                                                                                      -
                                                                                      1289  // Generating a random
                                                                                      -
                                                                                      1290  std::uniform_real_distribution<> urand(0, 1);
                                                                                      -
                                                                                      1291  double r = urand(*rengine);
                                                                                      -
                                                                                      1292  double cumprob = 0.0;
                                                                                      -
                                                                                      1293 
                                                                                      -
                                                                                      1294  size_t k = params.size();
                                                                                      -
                                                                                      1295 
                                                                                      -
                                                                                      1296  // Sampling an array
                                                                                      -
                                                                                      1297  size_t j = 0u;
                                                                                      -
                                                                                      1298  std::vector< double > & probs = pset_probs[a];
                                                                                      -
                                                                                      1299  if ((probs.size() > 0u) && (vec_equal_approx(params, params_last[a])))
                                                                                      -
                                                                                      1300  // If precomputed, then no need to recalc support
                                                                                      -
                                                                                      1301  {
                                                                                      -
                                                                                      1302 
                                                                                      -
                                                                                      1303  while (cumprob < r)
                                                                                      -
                                                                                      1304  cumprob += probs[j++];
                                                                                      -
                                                                                      1305 
                                                                                      -
                                                                                      1306  if (j > 0u)
                                                                                      -
                                                                                      1307  j--;
                                                                                      -
                                                                                      1308 
                                                                                      -
                                                                                      1309  } else {
                                                                                      -
                                                                                      1310 
                                                                                      -
                                                                                      1311  probs.resize(pset_arrays[a].size());
                                                                                      -
                                                                                      1312  std::vector< double > temp_stats(params.size());
                                                                                      -
                                                                                      1313  const std::vector< double > & stats = pset_stats[a];
                                                                                      -
                                                                                      1314 
                                                                                      -
                                                                                      1315  int i_matches = -1;
                                                                                      -
                                                                                      1316  for (size_t array = 0u; array < probs.size(); ++array)
                                                                                      -
                                                                                      1317  {
                                                                                      -
                                                                                      1318 
                                                                                      -
                                                                                      1319  // Filling out the parameters
                                                                                      -
                                                                                      1320  for (auto p = 0u; p < params.size(); ++p)
                                                                                      -
                                                                                      1321  temp_stats[p] = stats[array * k + p];
                                                                                      -
                                                                                      1322 
                                                                                      -
                                                                                      1323  probs[array] = this->likelihood(params, temp_stats, i, false);
                                                                                      -
                                                                                      1324  cumprob += probs[array];
                                                                                      -
                                                                                      1325 
                                                                                      -
                                                                                      1326  if (i_matches == -1 && cumprob >= r)
                                                                                      -
                                                                                      1327  i_matches = array;
                                                                                      -
                                                                                      1328  }
                                                                                      +
                                                                                      1261  size_t i;
                                                                                      +
                                                                                      1262 
                                                                                      +
                                                                                      1263  // If the data hasn't been analyzed earlier, then we need to compute
                                                                                      +
                                                                                      1264  // the support
                                                                                      +
                                                                                      1265  std::vector< double > key = counters->gen_hash(Array_);
                                                                                      +
                                                                                      1266  MapVec_type< double, size_t >::const_iterator locator = keys2support.find(key);
                                                                                      +
                                                                                      1267  if (locator == keys2support.end())
                                                                                      +
                                                                                      1268  {
                                                                                      +
                                                                                      1269  // throw std::out_of_range("Sampling from an array that has no support in the model.");
                                                                                      +
                                                                                      1270 
                                                                                      +
                                                                                      1271  // Adding to the map
                                                                                      +
                                                                                      1272  keys2support[key] = stats_support.size();
                                                                                      +
                                                                                      1273  stats_support_n_arrays.push_back(1u); // How many elements now
                                                                                      +
                                                                                      1274  arrays2support.push_back(stats_support.size()); // Map of the array id to the support
                                                                                      +
                                                                                      1275 
                                                                                      +
                                                                                      1276  // Computing support using the counters included in the model
                                                                                      +
                                                                                      1277  support_fun.reset_array(Array_);
                                                                                      +
                                                                                      1278 
                                                                                      +
                                                                                      1281  if (with_pset)
                                                                                      +
                                                                                      1282  {
                                                                                      +
                                                                                      1283 
                                                                                      +
                                                                                      1284  // Making space for storing the support
                                                                                      +
                                                                                      1285  pset_arrays.resize(pset_arrays.size() + 1u);
                                                                                      +
                                                                                      1286  pset_stats.resize(pset_stats.size() + 1u);
                                                                                      +
                                                                                      1287  pset_probs.resize(pset_probs.size() + 1u);
                                                                                      +
                                                                                      1288 
                                                                                      +
                                                                                      1289  try
                                                                                      +
                                                                                      1290  {
                                                                                      +
                                                                                      1291 
                                                                                      +
                                                                                      1292  support_fun.calc(
                                                                                      +
                                                                                      1293  &(pset_arrays[pset_arrays.size() - 1u]),
                                                                                      +
                                                                                      1294  &(pset_stats[pset_stats.size() - 1u])
                                                                                      +
                                                                                      1295  );
                                                                                      +
                                                                                      1296 
                                                                                      +
                                                                                      1297  }
                                                                                      +
                                                                                      1298  catch (const std::exception& e)
                                                                                      +
                                                                                      1299  {
                                                                                      +
                                                                                      1300 
                                                                                      +
                                                                                      1301  printf_barry(
                                                                                      +
                                                                                      1302  "A problem ocurred while trying to add the array (and recording the powerset). "
                                                                                      +
                                                                                      1303  );
                                                                                      +
                                                                                      1304  printf_barry("with error %s\n", e.what());
                                                                                      +
                                                                                      1305  throw std::logic_error("");
                                                                                      +
                                                                                      1306 
                                                                                      +
                                                                                      1307  }
                                                                                      +
                                                                                      1308 
                                                                                      +
                                                                                      1309  }
                                                                                      +
                                                                                      1310  else
                                                                                      +
                                                                                      1311  {
                                                                                      +
                                                                                      1312  support_fun.calc();
                                                                                      +
                                                                                      1313  }
                                                                                      +
                                                                                      1314 
                                                                                      +
                                                                                      1315  if (transform_model_fun)
                                                                                      +
                                                                                      1316  {
                                                                                      +
                                                                                      1317  auto tmpsupport = support_fun.get_counts();
                                                                                      +
                                                                                      1318  size_t k = counter_fun.size();
                                                                                      +
                                                                                      1319  size_t n = tmpsupport.size() / (k + 1);
                                                                                      +
                                                                                      1320 
                                                                                      +
                                                                                      1321  std::vector< double > s_new(0u);
                                                                                      +
                                                                                      1322  s_new.reserve(tmpsupport.size());
                                                                                      +
                                                                                      1323 
                                                                                      +
                                                                                      1324  for (size_t i = 0u; i < n; ++i)
                                                                                      +
                                                                                      1325  {
                                                                                      +
                                                                                      1326 
                                                                                      +
                                                                                      1327  // Appending size
                                                                                      +
                                                                                      1328  s_new.push_back(tmpsupport[i * (k + 1u)]);
                                                                                      1329 
                                                                                      -
                                                                                      1330  #ifdef BARRY_DEBUG
                                                                                      -
                                                                                      1331  if (i_matches < 0)
                                                                                      -
                                                                                      1332  throw std::logic_error(
                                                                                      -
                                                                                      1333  std::string(
                                                                                      -
                                                                                      1334  "Something went wrong when sampling from a different set of.") +
                                                                                      -
                                                                                      1335  std::string("parameters. Please report this bug: ") +
                                                                                      -
                                                                                      1336  std::string(" cumprob: ") + std::to_string(cumprob) +
                                                                                      -
                                                                                      1337  std::string(" r: ") + std::to_string(r)
                                                                                      -
                                                                                      1338  );
                                                                                      -
                                                                                      1339  #endif
                                                                                      -
                                                                                      1340 
                                                                                      -
                                                                                      1341  j = i_matches;
                                                                                      -
                                                                                      1342 
                                                                                      -
                                                                                      1343  }
                                                                                      -
                                                                                      1344 
                                                                                      -
                                                                                      1345 
                                                                                      -
                                                                                      1346  #ifdef BARRY_DEBUG
                                                                                      -
                                                                                      1347  return this->pset_arrays.at(a).at(j);
                                                                                      -
                                                                                      1348  #else
                                                                                      -
                                                                                      1349  return this->pset_arrays[a][j];
                                                                                      -
                                                                                      1350  #endif
                                                                                      +
                                                                                      1330  // Applying transformation and adding to the new set
                                                                                      +
                                                                                      1331  auto res = transform_model_fun(&tmpsupport[i * (k + 1u) + 1u], k);
                                                                                      +
                                                                                      1332  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                      +
                                                                                      1333 
                                                                                      +
                                                                                      1334  }
                                                                                      +
                                                                                      1335 
                                                                                      +
                                                                                      1336  stats_support.push_back(s_new);
                                                                                      +
                                                                                      1337 
                                                                                      +
                                                                                      1338  } else
                                                                                      +
                                                                                      1339  stats_support.push_back(support_fun.get_counts());
                                                                                      +
                                                                                      1340 
                                                                                      +
                                                                                      1341  // Making room for the previous parameters. This will be used to check if
                                                                                      +
                                                                                      1342  // the normalizing constant has been updated or not.
                                                                                      +
                                                                                      1343  params_last.push_back(stats_target[0u]);
                                                                                      +
                                                                                      1344  normalizing_constants.push_back(0.0);
                                                                                      +
                                                                                      1345  first_calc_done.push_back(false);
                                                                                      +
                                                                                      1346 
                                                                                      +
                                                                                      1347  i = arrays2support.size() - 1u;
                                                                                      +
                                                                                      1348  } else
                                                                                      +
                                                                                      1349  // Retrieving the corresponding position in the support
                                                                                      +
                                                                                      1350  i = locator->second;
                                                                                      1351 
                                                                                      -
                                                                                      1352 }
                                                                                      -
                                                                                      1353 
                                                                                      -
                                                                                      1354 MODEL_TEMPLATE(double, conditional_prob)(
                                                                                      -
                                                                                      1355  const Array_Type & Array_,
                                                                                      -
                                                                                      1356  const std::vector< double > & params,
                                                                                      -
                                                                                      1357  size_t i,
                                                                                      -
                                                                                      1358  size_t j
                                                                                      -
                                                                                      1359 ) {
                                                                                      -
                                                                                      1360 
                                                                                      -
                                                                                      1361  // Generating a copy of the array so we can update
                                                                                      -
                                                                                      1362  Array_Type A(Array_, true);
                                                                                      -
                                                                                      1363 
                                                                                      -
                                                                                      1364  // Making sure we add it first
                                                                                      -
                                                                                      1365  A.insert_cell(i, j, A.default_val(), true, false);
                                                                                      -
                                                                                      1366 
                                                                                      -
                                                                                      1367  // Computing the change stats_target
                                                                                      -
                                                                                      1368  std::vector< double > tmp_counts;
                                                                                      -
                                                                                      1369  tmp_counts.reserve(counters->size());
                                                                                      -
                                                                                      1370  for (size_t ii = 0u; ii < counters->size(); ++ii)
                                                                                      -
                                                                                      1371  tmp_counts.push_back(counters->operator[](ii).count(A, i, j));
                                                                                      -
                                                                                      1372 
                                                                                      -
                                                                                      1373  // If there is a transformation function, it needs to be
                                                                                      -
                                                                                      1374  // applied before dealing with the likelihood.
                                                                                      -
                                                                                      1375  if (transform_model_fun)
                                                                                      -
                                                                                      1376  tmp_counts = transform_model_fun(&tmp_counts[0u], tmp_counts.size());
                                                                                      -
                                                                                      1377 
                                                                                      -
                                                                                      1378  return 1.0/
                                                                                      -
                                                                                      1379  (1.0 + std::exp(-vec_inner_prod<double>(
                                                                                      -
                                                                                      1380  &params[0u], &tmp_counts[0u], params.size()
                                                                                      -
                                                                                      1381  )));
                                                                                      -
                                                                                      1382 
                                                                                      -
                                                                                      1383 
                                                                                      -
                                                                                      1384 }
                                                                                      -
                                                                                      1385 
                                                                                      -
                                                                                      1386 MODEL_TEMPLATE(const std::mt19937 *, get_rengine)() const {
                                                                                      -
                                                                                      1387  return this->rengine;
                                                                                      -
                                                                                      1388 }
                                                                                      -
                                                                                      1389 
                                                                                      -
                                                                                      1390 template MODEL_TEMPLATE_ARGS()
                                                                                      -
                                                                                      1391 inline Counters<Array_Type,Data_Counter_Type> * MODEL_TYPE()::get_counters() {
                                                                                      -
                                                                                      1392  return this->counters;
                                                                                      -
                                                                                      1393 }
                                                                                      -
                                                                                      1394 
                                                                                      -
                                                                                      1395 template MODEL_TEMPLATE_ARGS()
                                                                                      -
                                                                                      1396 inline Rules<Array_Type,Data_Rule_Type> * MODEL_TYPE()::get_rules() {
                                                                                      -
                                                                                      1397  return this->rules;
                                                                                      -
                                                                                      1398 }
                                                                                      -
                                                                                      1399 
                                                                                      -
                                                                                      1400 template MODEL_TEMPLATE_ARGS()
                                                                                      -
                                                                                      1401 inline Rules<Array_Type,Data_Rule_Dyn_Type> * MODEL_TYPE()::get_rules_dyn() {
                                                                                      -
                                                                                      1402  return this->rules_dyn;
                                                                                      -
                                                                                      1403 }
                                                                                      -
                                                                                      1404 
                                                                                      -
                                                                                      1405 template MODEL_TEMPLATE_ARGS()
                                                                                      -
                                                                                      1406 inline Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> *
                                                                                      -
                                                                                      1407 MODEL_TYPE()::get_support_fun() {
                                                                                      -
                                                                                      1408  return &this->support_fun;
                                                                                      -
                                                                                      1409 }
                                                                                      -
                                                                                      1410 
                                                                                      -
                                                                                      1411 MODEL_TEMPLATE(std::vector< std::vector< double > > *, get_stats_target)()
                                                                                      -
                                                                                      1412 {
                                                                                      -
                                                                                      1413  return &stats_target;
                                                                                      -
                                                                                      1414 }
                                                                                      -
                                                                                      1415 
                                                                                      -
                                                                                      1416 MODEL_TEMPLATE(std::vector< std::vector< double > > *, get_stats_support)()
                                                                                      -
                                                                                      1417 {
                                                                                      -
                                                                                      1418  return &stats_support;
                                                                                      -
                                                                                      1419 }
                                                                                      -
                                                                                      1420 
                                                                                      -
                                                                                      1421 MODEL_TEMPLATE(std::vector< size_t > *, get_arrays2support)()
                                                                                      -
                                                                                      1422 {
                                                                                      -
                                                                                      1423  return &arrays2support;
                                                                                      -
                                                                                      1424 }
                                                                                      -
                                                                                      1425 
                                                                                      -
                                                                                      1426 MODEL_TEMPLATE(std::vector< std::vector< Array_Type > > *, get_pset_arrays)() {
                                                                                      -
                                                                                      1427  return &pset_arrays;
                                                                                      -
                                                                                      1428 }
                                                                                      -
                                                                                      1429 
                                                                                      -
                                                                                      1430 MODEL_TEMPLATE(std::vector< std::vector<double> > *, get_pset_stats)() {
                                                                                      -
                                                                                      1431  return &pset_stats;
                                                                                      -
                                                                                      1432 }
                                                                                      +
                                                                                      1352  // Getting the index
                                                                                      +
                                                                                      1353  size_t a = arrays2support[i];
                                                                                      +
                                                                                      1354 
                                                                                      +
                                                                                      1355  // Generating a random
                                                                                      +
                                                                                      1356  std::uniform_real_distribution<> urand(0, 1);
                                                                                      +
                                                                                      1357  double r = urand(*rengine);
                                                                                      +
                                                                                      1358  double cumprob = 0.0;
                                                                                      +
                                                                                      1359 
                                                                                      +
                                                                                      1360  size_t k = params.size();
                                                                                      +
                                                                                      1361 
                                                                                      +
                                                                                      1362  // Sampling an array
                                                                                      +
                                                                                      1363  size_t j = 0u;
                                                                                      +
                                                                                      1364  std::vector< double > & probs = pset_probs[a];
                                                                                      +
                                                                                      1365  if ((probs.size() > 0u) && (vec_equal_approx(params, params_last[a])))
                                                                                      +
                                                                                      1366  // If precomputed, then no need to recalc support
                                                                                      +
                                                                                      1367  {
                                                                                      +
                                                                                      1368 
                                                                                      +
                                                                                      1369  while (cumprob < r)
                                                                                      +
                                                                                      1370  cumprob += probs[j++];
                                                                                      +
                                                                                      1371 
                                                                                      +
                                                                                      1372  if (j > 0u)
                                                                                      +
                                                                                      1373  j--;
                                                                                      +
                                                                                      1374 
                                                                                      +
                                                                                      1375  } else {
                                                                                      +
                                                                                      1376 
                                                                                      +
                                                                                      1377  probs.resize(pset_arrays[a].size());
                                                                                      +
                                                                                      1378  std::vector< double > temp_stats(params.size());
                                                                                      +
                                                                                      1379  const std::vector< double > & stats = pset_stats[a];
                                                                                      +
                                                                                      1380 
                                                                                      +
                                                                                      1381  int i_matches = -1;
                                                                                      +
                                                                                      1382  for (size_t array = 0u; array < probs.size(); ++array)
                                                                                      +
                                                                                      1383  {
                                                                                      +
                                                                                      1384 
                                                                                      +
                                                                                      1385  // Filling out the parameters
                                                                                      +
                                                                                      1386  for (auto p = 0u; p < params.size(); ++p)
                                                                                      +
                                                                                      1387  temp_stats[p] = stats[array * k + p];
                                                                                      +
                                                                                      1388 
                                                                                      +
                                                                                      1389  probs[array] = this->likelihood(params, temp_stats, i, false);
                                                                                      +
                                                                                      1390  cumprob += probs[array];
                                                                                      +
                                                                                      1391 
                                                                                      +
                                                                                      1392  if (i_matches == -1 && cumprob >= r)
                                                                                      +
                                                                                      1393  i_matches = array;
                                                                                      +
                                                                                      1394  }
                                                                                      +
                                                                                      1395 
                                                                                      +
                                                                                      1396  #ifdef BARRY_DEBUG
                                                                                      +
                                                                                      1397  if (i_matches < 0)
                                                                                      +
                                                                                      1398  throw std::logic_error(
                                                                                      +
                                                                                      1399  std::string(
                                                                                      +
                                                                                      1400  "Something went wrong when sampling from a different set of.") +
                                                                                      +
                                                                                      1401  std::string("parameters. Please report this bug: ") +
                                                                                      +
                                                                                      1402  std::string(" cumprob: ") + std::to_string(cumprob) +
                                                                                      +
                                                                                      1403  std::string(" r: ") + std::to_string(r)
                                                                                      +
                                                                                      1404  );
                                                                                      +
                                                                                      1405  #endif
                                                                                      +
                                                                                      1406 
                                                                                      +
                                                                                      1407  j = i_matches;
                                                                                      +
                                                                                      1408 
                                                                                      +
                                                                                      1409  }
                                                                                      +
                                                                                      1410 
                                                                                      +
                                                                                      1411 
                                                                                      +
                                                                                      1412  #ifdef BARRY_DEBUG
                                                                                      +
                                                                                      1413  return this->pset_arrays.at(a).at(j);
                                                                                      +
                                                                                      1414  #else
                                                                                      +
                                                                                      1415  return this->pset_arrays[a][j];
                                                                                      +
                                                                                      1416  #endif
                                                                                      +
                                                                                      1417 
                                                                                      +
                                                                                      1418 }
                                                                                      +
                                                                                      1419 
                                                                                      +
                                                                                      1420 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1421 inline double Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: conditional_prob(
                                                                                      +
                                                                                      1422  const Array_Type & Array_,
                                                                                      +
                                                                                      1423  const std::vector< double > & params,
                                                                                      +
                                                                                      1424  size_t i,
                                                                                      +
                                                                                      1425  size_t j
                                                                                      +
                                                                                      1426 ) {
                                                                                      +
                                                                                      1427 
                                                                                      +
                                                                                      1428  // Generating a copy of the array so we can update
                                                                                      +
                                                                                      1429  Array_Type A(Array_, true);
                                                                                      +
                                                                                      1430 
                                                                                      +
                                                                                      1431  // Making sure we add it first
                                                                                      +
                                                                                      1432  A.insert_cell(i, j, A.default_val(), true, false);
                                                                                      1433 
                                                                                      -
                                                                                      1434 MODEL_TEMPLATE(std::vector< std::vector<double> > *, get_pset_probs)() {
                                                                                      -
                                                                                      1435  return &pset_probs;
                                                                                      -
                                                                                      1436 }
                                                                                      -
                                                                                      1437 
                                                                                      -
                                                                                      1438 MODEL_TEMPLATE(void, set_transform_model)(
                                                                                      -
                                                                                      1439  std::function<std::vector<double>(double *,size_t)> fun,
                                                                                      -
                                                                                      1440  std::vector< std::string > names
                                                                                      -
                                                                                      1441  )
                                                                                      -
                                                                                      1442 {
                                                                                      -
                                                                                      1443 
                                                                                      -
                                                                                      1444  if (transform_model_fun)
                                                                                      -
                                                                                      1445  throw std::logic_error("A transformation function for the model has already been established.");
                                                                                      -
                                                                                      1446 
                                                                                      -
                                                                                      1447  transform_model_fun = fun;
                                                                                      -
                                                                                      1448  transform_model_term_names = names;
                                                                                      +
                                                                                      1434  // Computing the change stats_target
                                                                                      +
                                                                                      1435  std::vector< double > tmp_counts;
                                                                                      +
                                                                                      1436  tmp_counts.reserve(counters->size());
                                                                                      +
                                                                                      1437  for (size_t ii = 0u; ii < counters->size(); ++ii)
                                                                                      +
                                                                                      1438  tmp_counts.push_back(counters->operator[](ii).count(A, i, j));
                                                                                      +
                                                                                      1439 
                                                                                      +
                                                                                      1440  // If there is a transformation function, it needs to be
                                                                                      +
                                                                                      1441  // applied before dealing with the likelihood.
                                                                                      +
                                                                                      1442  if (transform_model_fun)
                                                                                      +
                                                                                      1443  tmp_counts = transform_model_fun(&tmp_counts[0u], tmp_counts.size());
                                                                                      +
                                                                                      1444 
                                                                                      +
                                                                                      1445  return 1.0/
                                                                                      +
                                                                                      1446  (1.0 + std::exp(-vec_inner_prod<double>(
                                                                                      +
                                                                                      1447  &params[0u], &tmp_counts[0u], params.size()
                                                                                      +
                                                                                      1448  )));
                                                                                      1449 
                                                                                      -
                                                                                      1450  size_t k = counters->size();
                                                                                      -
                                                                                      1451 
                                                                                      -
                                                                                      1452  // Applying over the support
                                                                                      -
                                                                                      1453  for (auto & s : stats_support)
                                                                                      -
                                                                                      1454  {
                                                                                      -
                                                                                      1455 
                                                                                      -
                                                                                      1456  // Making room for the new support
                                                                                      -
                                                                                      1457  std::vector< double > s_new(0u);
                                                                                      -
                                                                                      1458  s_new.reserve(s.size());
                                                                                      -
                                                                                      1459 
                                                                                      -
                                                                                      1460  size_t n = s.size() / (k + 1u);
                                                                                      -
                                                                                      1461 
                                                                                      -
                                                                                      1462  // Iterating through the unique sets
                                                                                      -
                                                                                      1463  for (size_t i = 0; i < n; ++i)
                                                                                      -
                                                                                      1464  {
                                                                                      -
                                                                                      1465 
                                                                                      -
                                                                                      1466  // Appending size
                                                                                      -
                                                                                      1467  s_new.push_back(s[i * (k + 1u)]);
                                                                                      -
                                                                                      1468 
                                                                                      -
                                                                                      1469  // Applying transformation and adding to the new set
                                                                                      -
                                                                                      1470  auto res = transform_model_fun(&s[i * (k + 1u) + 1u], k);
                                                                                      -
                                                                                      1471 
                                                                                      -
                                                                                      1472  if (res.size() != transform_model_term_names.size())
                                                                                      -
                                                                                      1473  throw std::length_error("The transform vector from -transform_model_fun- does not match the size of -transform_model_term_names-.");
                                                                                      -
                                                                                      1474 
                                                                                      -
                                                                                      1475  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                      -
                                                                                      1476 
                                                                                      -
                                                                                      1477  }
                                                                                      +
                                                                                      1450 
                                                                                      +
                                                                                      1451 }
                                                                                      +
                                                                                      1452 
                                                                                      +
                                                                                      1453 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1454 inline const std::mt19937 * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_rengine() const {
                                                                                      +
                                                                                      1455  return this->rengine;
                                                                                      +
                                                                                      1456 }
                                                                                      +
                                                                                      1457 
                                                                                      +
                                                                                      1458 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1459 inline Counters<Array_Type,Data_Counter_Type> * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_counters() {
                                                                                      +
                                                                                      1460  return this->counters;
                                                                                      +
                                                                                      1461 }
                                                                                      +
                                                                                      1462 
                                                                                      +
                                                                                      1463 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1464 inline Rules<Array_Type,Data_Rule_Type> * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules() {
                                                                                      +
                                                                                      1465  return this->rules;
                                                                                      +
                                                                                      1466 }
                                                                                      +
                                                                                      1467 
                                                                                      +
                                                                                      1468 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1469 inline Rules<Array_Type,Data_Rule_Dyn_Type> * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules_dyn() {
                                                                                      +
                                                                                      1470  return this->rules_dyn;
                                                                                      +
                                                                                      1471 }
                                                                                      +
                                                                                      1472 
                                                                                      +
                                                                                      1473 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1474 inline Support<Array_Type,Data_Counter_Type,Data_Rule_Type,Data_Rule_Dyn_Type> *
                                                                                      +
                                                                                      1475 Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>::get_support_fun() {
                                                                                      +
                                                                                      1476  return &this->support_fun;
                                                                                      +
                                                                                      1477 }
                                                                                      1478 
                                                                                      -
                                                                                      1479  // Exchanging with the original
                                                                                      -
                                                                                      1480  std::swap(s, s_new);
                                                                                      -
                                                                                      1481 
                                                                                      -
                                                                                      1482  }
                                                                                      -
                                                                                      1483 
                                                                                      -
                                                                                      1484  // Applying over the target statistics
                                                                                      -
                                                                                      1485  for (auto & s : stats_target)
                                                                                      -
                                                                                      1486  s = transform_model_fun(&s[0u], k);
                                                                                      -
                                                                                      1487 
                                                                                      -
                                                                                      1488  // Checking if there is support included
                                                                                      -
                                                                                      1489  if (with_pset)
                                                                                      -
                                                                                      1490  {
                                                                                      -
                                                                                      1491 
                                                                                      -
                                                                                      1492  // Applying it to the support
                                                                                      -
                                                                                      1493  for (auto s = 0u; s < pset_arrays.size(); ++s)
                                                                                      -
                                                                                      1494  {
                                                                                      -
                                                                                      1495  std::vector< double > new_stats;
                                                                                      +
                                                                                      1479 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1480 inline std::vector< std::vector< double > > * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_stats_target()
                                                                                      +
                                                                                      1481 {
                                                                                      +
                                                                                      1482  return &stats_target;
                                                                                      +
                                                                                      1483 }
                                                                                      +
                                                                                      1484 
                                                                                      +
                                                                                      1485 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1486 inline std::vector< std::vector< double > > * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_stats_support()
                                                                                      +
                                                                                      1487 {
                                                                                      +
                                                                                      1488  return &stats_support;
                                                                                      +
                                                                                      1489 }
                                                                                      +
                                                                                      1490 
                                                                                      +
                                                                                      1491 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1492 inline std::vector< size_t > * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_arrays2support()
                                                                                      +
                                                                                      1493 {
                                                                                      +
                                                                                      1494  return &arrays2support;
                                                                                      +
                                                                                      1495 }
                                                                                      1496 
                                                                                      -
                                                                                      1497  for (auto a = 0u; a < pset_arrays[s].size(); ++a)
                                                                                      -
                                                                                      1498  {
                                                                                      -
                                                                                      1499  // Computing the transformed version of the data
                                                                                      -
                                                                                      1500  auto tmpstats = transform_model_fun(
                                                                                      -
                                                                                      1501  &pset_stats[s][a * k], k
                                                                                      -
                                                                                      1502  );
                                                                                      -
                                                                                      1503 
                                                                                      -
                                                                                      1504  // Storing the new values
                                                                                      -
                                                                                      1505  for (auto p = 0u; p < k; ++p)
                                                                                      -
                                                                                      1506  new_stats.push_back(tmpstats[p]);
                                                                                      -
                                                                                      1507  }
                                                                                      -
                                                                                      1508 
                                                                                      -
                                                                                      1509  // Updating the dataset
                                                                                      -
                                                                                      1510  std::swap(pset_stats[s], new_stats);
                                                                                      +
                                                                                      1497 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1498 inline std::vector< std::vector< Array_Type > > * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_pset_arrays() {
                                                                                      +
                                                                                      1499  return &pset_arrays;
                                                                                      +
                                                                                      1500 }
                                                                                      +
                                                                                      1501 
                                                                                      +
                                                                                      1502 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1503 inline std::vector< std::vector<double> > * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_pset_stats() {
                                                                                      +
                                                                                      1504  return &pset_stats;
                                                                                      +
                                                                                      1505 }
                                                                                      +
                                                                                      1506 
                                                                                      +
                                                                                      1507 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1508 inline std::vector< std::vector<double> > * Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: get_pset_probs() {
                                                                                      +
                                                                                      1509  return &pset_probs;
                                                                                      +
                                                                                      1510 }
                                                                                      1511 
                                                                                      -
                                                                                      1512  }
                                                                                      -
                                                                                      1513 
                                                                                      -
                                                                                      1514  }
                                                                                      -
                                                                                      1515 
                                                                                      -
                                                                                      1516  // And, resizing the last set of parameters
                                                                                      -
                                                                                      1517  for (auto & p : params_last)
                                                                                      -
                                                                                      1518  p.resize(transform_model_term_names.size());
                                                                                      -
                                                                                      1519 
                                                                                      -
                                                                                      1520  return;
                                                                                      -
                                                                                      1521 
                                                                                      -
                                                                                      1522 }
                                                                                      -
                                                                                      1523 
                                                                                      -
                                                                                      1524 #undef MODEL_TEMPLATE
                                                                                      -
                                                                                      1525 #undef MODEL_TEMPLATE_ARGS
                                                                                      -
                                                                                      1526 #undef MODEL_TYPE
                                                                                      -
                                                                                      1527 
                                                                                      -
                                                                                      1528 #endif
                                                                                      +
                                                                                      1512 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      +
                                                                                      1513 inline void Model<Array_Type,Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type>:: set_transform_model(
                                                                                      +
                                                                                      1514  std::function<std::vector<double>(double *,size_t)> fun,
                                                                                      +
                                                                                      1515  std::vector< std::string > names
                                                                                      +
                                                                                      1516  )
                                                                                      +
                                                                                      1517 {
                                                                                      +
                                                                                      1518 
                                                                                      +
                                                                                      1519  if (transform_model_fun)
                                                                                      +
                                                                                      1520  throw std::logic_error("A transformation function for the model has already been established.");
                                                                                      +
                                                                                      1521 
                                                                                      +
                                                                                      1522  transform_model_fun = fun;
                                                                                      +
                                                                                      1523  transform_model_term_names = names;
                                                                                      +
                                                                                      1524 
                                                                                      +
                                                                                      1525  size_t k = counters->size();
                                                                                      +
                                                                                      1526 
                                                                                      +
                                                                                      1527  // Applying over the support
                                                                                      +
                                                                                      1528  for (auto & s : stats_support)
                                                                                      +
                                                                                      1529  {
                                                                                      +
                                                                                      1530 
                                                                                      +
                                                                                      1531  // Making room for the new support
                                                                                      +
                                                                                      1532  std::vector< double > s_new(0u);
                                                                                      +
                                                                                      1533  s_new.reserve(s.size());
                                                                                      +
                                                                                      1534 
                                                                                      +
                                                                                      1535  size_t n = s.size() / (k + 1u);
                                                                                      +
                                                                                      1536 
                                                                                      +
                                                                                      1537  // Iterating through the unique sets
                                                                                      +
                                                                                      1538  for (size_t i = 0; i < n; ++i)
                                                                                      +
                                                                                      1539  {
                                                                                      +
                                                                                      1540 
                                                                                      +
                                                                                      1541  // Appending size
                                                                                      +
                                                                                      1542  s_new.push_back(s[i * (k + 1u)]);
                                                                                      +
                                                                                      1543 
                                                                                      +
                                                                                      1544  // Applying transformation and adding to the new set
                                                                                      +
                                                                                      1545  auto res = transform_model_fun(&s[i * (k + 1u) + 1u], k);
                                                                                      +
                                                                                      1546 
                                                                                      +
                                                                                      1547  if (res.size() != transform_model_term_names.size())
                                                                                      +
                                                                                      1548  throw std::length_error("The transform vector from -transform_model_fun- does not match the size of -transform_model_term_names-.");
                                                                                      +
                                                                                      1549 
                                                                                      +
                                                                                      1550  std::copy(res.begin(), res.end(), std::back_inserter(s_new));
                                                                                      +
                                                                                      1551 
                                                                                      +
                                                                                      1552  }
                                                                                      +
                                                                                      1553 
                                                                                      +
                                                                                      1554  // Exchanging with the original
                                                                                      +
                                                                                      1555  std::swap(s, s_new);
                                                                                      +
                                                                                      1556 
                                                                                      +
                                                                                      1557  }
                                                                                      +
                                                                                      1558 
                                                                                      +
                                                                                      1559  // Applying over the target statistics
                                                                                      +
                                                                                      1560  for (auto & s : stats_target)
                                                                                      +
                                                                                      1561  s = transform_model_fun(&s[0u], k);
                                                                                      +
                                                                                      1562 
                                                                                      +
                                                                                      1563  // Checking if there is support included
                                                                                      +
                                                                                      1564  if (with_pset)
                                                                                      +
                                                                                      1565  {
                                                                                      +
                                                                                      1566 
                                                                                      +
                                                                                      1567  // Applying it to the support
                                                                                      +
                                                                                      1568  for (auto s = 0u; s < pset_arrays.size(); ++s)
                                                                                      +
                                                                                      1569  {
                                                                                      +
                                                                                      1570  std::vector< double > new_stats;
                                                                                      +
                                                                                      1571 
                                                                                      +
                                                                                      1572  for (auto a = 0u; a < pset_arrays[s].size(); ++a)
                                                                                      +
                                                                                      1573  {
                                                                                      +
                                                                                      1574  // Computing the transformed version of the data
                                                                                      +
                                                                                      1575  auto tmpstats = transform_model_fun(
                                                                                      +
                                                                                      1576  &pset_stats[s][a * k], k
                                                                                      +
                                                                                      1577  );
                                                                                      +
                                                                                      1578 
                                                                                      +
                                                                                      1579  // Storing the new values
                                                                                      +
                                                                                      1580  for (auto p = 0u; p < k; ++p)
                                                                                      +
                                                                                      1581  new_stats.push_back(tmpstats[p]);
                                                                                      +
                                                                                      1582  }
                                                                                      +
                                                                                      1583 
                                                                                      +
                                                                                      1584  // Updating the dataset
                                                                                      +
                                                                                      1585  std::swap(pset_stats[s], new_stats);
                                                                                      +
                                                                                      1586 
                                                                                      +
                                                                                      1587  }
                                                                                      +
                                                                                      1588 
                                                                                      +
                                                                                      1589  }
                                                                                      +
                                                                                      1590 
                                                                                      +
                                                                                      1591  // And, resizing the last set of parameters
                                                                                      +
                                                                                      1592  for (auto & p : params_last)
                                                                                      +
                                                                                      1593  p.resize(transform_model_term_names.size());
                                                                                      +
                                                                                      1594 
                                                                                      +
                                                                                      1595  return;
                                                                                      +
                                                                                      1596 
                                                                                      +
                                                                                      1597 }
                                                                                      +
                                                                                      1598 
                                                                                      +
                                                                                      1599 #undef MODEL_TEMPLATE
                                                                                      +
                                                                                      1600 #undef MODEL_TEMPLATE_ARGS
                                                                                      +
                                                                                      1601 #undef MODEL_TYPE
                                                                                      +
                                                                                      1602 
                                                                                      +
                                                                                      1603 #endif
                                                                                      printf_barry
                                                                                      #define printf_barry
                                                                                      Definition: barry-configuration.hpp:51
                                                                                      BARRY_SAFE_EXP
                                                                                      #define BARRY_SAFE_EXP
                                                                                      Definition: barry-configuration.hpp:33
                                                                                      +
                                                                                      BARRY_NCORES_ARG
                                                                                      #define BARRY_NCORES_ARG(default)
                                                                                      Definition: barry-macros.hpp:15
                                                                                      Counter
                                                                                      A counter function based on change statistics.
                                                                                      Definition: counters-bones.hpp:35
                                                                                      Counters
                                                                                      Vector of counters.
                                                                                      Definition: counters-bones.hpp:108
                                                                                      Model
                                                                                      General framework for discrete exponential models. This class allows generating discrete exponential ...
                                                                                      Definition: model-bones.hpp:34
                                                                                      +
                                                                                      Model::size_unique
                                                                                      size_t size_unique() const noexcept
                                                                                      Definition: model-meat.hpp:1107
                                                                                      Model::transform_model_term_names
                                                                                      std::vector< std::string > transform_model_term_names
                                                                                      Definition: model-bones.hpp:125
                                                                                      +
                                                                                      Model::get_rengine
                                                                                      const std::mt19937 * get_rengine() const
                                                                                      Definition: model-meat.hpp:1454
                                                                                      Model::rules_dyn
                                                                                      Rules< Array_Type, Data_Rule_Dyn_Type > * rules_dyn
                                                                                      Definition: model-bones.hpp:93
                                                                                      Model::rules
                                                                                      Rules< Array_Type, Data_Rule_Type > * rules
                                                                                      Definition: model-bones.hpp:92
                                                                                      Model::counter_fun
                                                                                      StatsCounter< Array_Type, Data_Counter_Type > counter_fun
                                                                                      Definition: model-bones.hpp:95
                                                                                      +
                                                                                      Model::size
                                                                                      size_t size() const noexcept
                                                                                      Definition: model-meat.hpp:1099
                                                                                      +
                                                                                      Model::add_counter
                                                                                      void add_counter(Counter< Array_Type, Data_Counter_Type > &counter)
                                                                                      Definition: model-meat.hpp:334
                                                                                      +
                                                                                      Model::get_counters
                                                                                      Counters< Array_Type, Data_Counter_Type > * get_counters()
                                                                                      Definition: model-meat.hpp:1459
                                                                                      Model::stats_target
                                                                                      std::vector< std::vector< double > > stats_target
                                                                                      Target statistics of the model.
                                                                                      Definition: model-bones.hpp:64
                                                                                      -
                                                                                      Model::sample
                                                                                      Array_Type sample(const Array_Type &Array_, const std::vector< double > &params={})
                                                                                      +
                                                                                      Model::get_pset_probs
                                                                                      std::vector< std::vector< double > > * get_pset_probs()
                                                                                      Definition: model-meat.hpp:1508
                                                                                      +
                                                                                      Model::sample
                                                                                      Array_Type sample(const Array_Type &Array_, const std::vector< double > &params={})
                                                                                      Definition: model-meat.hpp:1252
                                                                                      +
                                                                                      Model::get_stats_support
                                                                                      std::vector< std::vector< double > > * get_stats_support()
                                                                                      Definition: model-meat.hpp:1486
                                                                                      +
                                                                                      Model::add_rule_dyn
                                                                                      void add_rule_dyn(Rule< Array_Type, Data_Rule_Dyn_Type > &rule)
                                                                                      Definition: model-meat.hpp:417
                                                                                      Model::stats_support
                                                                                      std::vector< std::vector< double > > stats_support
                                                                                      Sufficient statistics of the model (support)
                                                                                      Definition: model-bones.hpp:62
                                                                                      -
                                                                                      Model::operator=
                                                                                      Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & operator=(const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
                                                                                      Definition: model-meat.hpp:256
                                                                                      +
                                                                                      Model::store_psets
                                                                                      void store_psets() noexcept
                                                                                      Definition: model-meat.hpp:319
                                                                                      +
                                                                                      Model::conditional_prob
                                                                                      double conditional_prob(const Array_Type &Array_, const std::vector< double > &params, size_t i, size_t j)
                                                                                      Conditional probability ("Gibbs sampler")
                                                                                      Definition: model-meat.hpp:1421
                                                                                      +
                                                                                      Model::likelihood_total
                                                                                      double likelihood_total(const std::vector< double > &params, bool as_log=false,)
                                                                                      Definition: model-meat.hpp:874
                                                                                      +
                                                                                      Model::get_pset_stats
                                                                                      std::vector< std::vector< double > > * get_pset_stats()
                                                                                      Statistics of the support(s)
                                                                                      Definition: model-meat.hpp:1503
                                                                                      +
                                                                                      Model::operator=
                                                                                      Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > & operator=(const Model< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > &Model_)
                                                                                      Definition: model-meat.hpp:269
                                                                                      +
                                                                                      Model::get_stats_target
                                                                                      std::vector< std::vector< double > > * get_stats_target()
                                                                                      Raw pointers to the support and target statistics.
                                                                                      Definition: model-meat.hpp:1480
                                                                                      +
                                                                                      Model::get_pset_arrays
                                                                                      std::vector< std::vector< Array_Type > > * get_pset_arrays()
                                                                                      Definition: model-meat.hpp:1498
                                                                                      +
                                                                                      Model::likelihood
                                                                                      double likelihood(const std::vector< double > &params, const size_t &i, bool as_log=false,)
                                                                                      Definition: model-meat.hpp:594
                                                                                      +
                                                                                      Model::get_support_fun
                                                                                      Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > * get_support_fun()
                                                                                      Definition: model-meat.hpp:1475
                                                                                      +
                                                                                      Model::gen_key
                                                                                      std::vector< double > gen_key(const Array_Type &Array_)
                                                                                      Definition: model-meat.hpp:327
                                                                                      Model::arrays2support
                                                                                      std::vector< size_t > arrays2support
                                                                                      Definition: model-bones.hpp:65
                                                                                      +
                                                                                      Model::add_array
                                                                                      size_t add_array(const Array_Type &Array_, bool force_new=false)
                                                                                      Adds an array to the support of not already included.
                                                                                      Definition: model-meat.hpp:458
                                                                                      +
                                                                                      Model::add_hasher
                                                                                      void add_hasher(Hasher_fun_type< Array_Type, Data_Counter_Type > fun_)
                                                                                      Definition: model-meat.hpp:378
                                                                                      +
                                                                                      Model::colnames
                                                                                      std::vector< std::string > colnames() const
                                                                                      Definition: model-meat.hpp:1156
                                                                                      +
                                                                                      Model::set_rules
                                                                                      void set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)
                                                                                      Definition: model-meat.hpp:399
                                                                                      Model::pset_stats
                                                                                      std::vector< std::vector< double > > pset_stats
                                                                                      Statistics of the support(s)
                                                                                      Definition: model-bones.hpp:82
                                                                                      +
                                                                                      Model::nrules
                                                                                      size_t nrules() const noexcept
                                                                                      Definition: model-meat.hpp:1127
                                                                                      Model::stats_support_n_arrays
                                                                                      std::vector< size_t > stats_support_n_arrays
                                                                                      Number of arrays included per support.
                                                                                      Definition: model-bones.hpp:63
                                                                                      +
                                                                                      Model::print_stats
                                                                                      void print_stats(size_t i) const
                                                                                      Definition: model-meat.hpp:1008
                                                                                      +
                                                                                      Model::nterms
                                                                                      size_t nterms() const noexcept
                                                                                      Definition: model-meat.hpp:1116
                                                                                      +
                                                                                      Model::get_rules
                                                                                      Rules< Array_Type, Data_Rule_Type > * get_rules()
                                                                                      Definition: model-meat.hpp:1464
                                                                                      +
                                                                                      Model::set_counters
                                                                                      void set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)
                                                                                      Definition: model-meat.hpp:360
                                                                                      +
                                                                                      Model::support_size
                                                                                      size_t support_size() const noexcept
                                                                                      Definition: model-meat.hpp:1143
                                                                                      +
                                                                                      Model::nrules_dyn
                                                                                      size_t nrules_dyn() const noexcept
                                                                                      Definition: model-meat.hpp:1135
                                                                                      Model::params_last
                                                                                      std::vector< std::vector< double > > params_last
                                                                                      Vector of the previously used parameters.
                                                                                      Definition: model-bones.hpp:99
                                                                                      -
                                                                                      Model::print
                                                                                      virtual void print() const
                                                                                      Prints information about the model.
                                                                                      Definition: model-meat.hpp:980
                                                                                      +
                                                                                      Model::print
                                                                                      virtual void print() const
                                                                                      Prints information about the model.
                                                                                      Definition: model-meat.hpp:1038
                                                                                      Model::support_fun
                                                                                      Support< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > support_fun
                                                                                      Definition: model-bones.hpp:94
                                                                                      +
                                                                                      Model::set_rules_dyn
                                                                                      void set_rules_dyn(Rules< Array_Type, Data_Rule_Dyn_Type > *rules_)
                                                                                      Definition: model-meat.hpp:441
                                                                                      Model::pset_arrays
                                                                                      std::vector< std::vector< Array_Type > > pset_arrays
                                                                                      Arrays of the support(s)
                                                                                      Definition: model-bones.hpp:81
                                                                                      Model::transform_model_fun
                                                                                      std::function< std::vector< double >double *, size_t k)> transform_model_fun
                                                                                      Transformation of the model.
                                                                                      Definition: model-bones.hpp:123
                                                                                      +
                                                                                      Model::get_arrays2support
                                                                                      std::vector< size_t > * get_arrays2support()
                                                                                      Definition: model-meat.hpp:1492
                                                                                      Model::keys2support
                                                                                      MapVec_type< double, size_t > keys2support
                                                                                      Map of types of arrays to support sets.
                                                                                      Definition: model-bones.hpp:72
                                                                                      - +
                                                                                      Model::normalizing_constants
                                                                                      std::vector< double > normalizing_constants
                                                                                      Definition: model-bones.hpp:100
                                                                                      Model::first_calc_done
                                                                                      std::vector< bool > first_calc_done
                                                                                      Definition: model-bones.hpp:101
                                                                                      +
                                                                                      Model::set_transform_model
                                                                                      void set_transform_model(std::function< std::vector< double >(double *, size_t)> fun, std::vector< std::string > names)
                                                                                      Set the transform_model_fun object.
                                                                                      Definition: model-meat.hpp:1513
                                                                                      Model::counters
                                                                                      Counters< Array_Type, Data_Counter_Type > * counters
                                                                                      Definition: model-bones.hpp:91
                                                                                      +
                                                                                      Model::get_pset
                                                                                      const std::vector< Array_Type > * get_pset(const size_t &i)
                                                                                      Definition: model-meat.hpp:983
                                                                                      +
                                                                                      Model::get_norm_const
                                                                                      double get_norm_const(const std::vector< double > &params, const size_t &i, bool as_log=false)
                                                                                      Definition: model-meat.hpp:946
                                                                                      +
                                                                                      Model::add_rule
                                                                                      void add_rule(Rule< Array_Type, Data_Rule_Type > &rule)
                                                                                      Definition: model-meat.hpp:389
                                                                                      +
                                                                                      Model::get_rules_dyn
                                                                                      Rules< Array_Type, Data_Rule_Dyn_Type > * get_rules_dyn()
                                                                                      Definition: model-meat.hpp:1469
                                                                                      Rule
                                                                                      Rule for determining if a cell should be included in a sequence.
                                                                                      Definition: rules-bones.hpp:20
                                                                                      Rules
                                                                                      Vector of objects of class Rule.
                                                                                      Definition: rules-bones.hpp:71
                                                                                      StatsCounter
                                                                                      Count stats for a single Array.
                                                                                      Definition: statscounter-bones.hpp:14
                                                                                      +
                                                                                      StatsCounter::set_counters
                                                                                      void set_counters(Counters< Array_Type, Data_Type > *counters_)
                                                                                      +
                                                                                      StatsCounter::count_all
                                                                                      std::vector< double > count_all()
                                                                                      Definition: statscounter-meat.hpp:99
                                                                                      Support
                                                                                      Compute the support of sufficient statistics.
                                                                                      Definition: support-bones.hpp:42
                                                                                      fun
                                                                                      Data_Type fun
                                                                                      Definition: counters-meat.hpp:111
                                                                                      +
                                                                                      count_fun_
                                                                                      Data_Type count_fun_
                                                                                      Definition: counters-meat.hpp:179
                                                                                      res
                                                                                      return res
                                                                                      Definition: counters-meat.hpp:265
                                                                                      +
                                                                                      init_fun_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > init_fun_
                                                                                      Definition: counters-meat.hpp:180
                                                                                      +
                                                                                      fun_
                                                                                      Data_Type fun_
                                                                                      Definition: counters-meat.hpp:271
                                                                                      +
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84
                                                                                      +
                                                                                      counter
                                                                                      Data_Type counter
                                                                                      Definition: counters-meat.hpp:171
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      noexcept
                                                                                      Data_Type &&counter_ noexcept
                                                                                      Definition: counters-meat.hpp:27
                                                                                      -
                                                                                      stats_support_n_arrays
                                                                                      stats_support_n_arrays[locator->second]
                                                                                      Definition: model-meat.hpp:560
                                                                                      -
                                                                                      i_matches
                                                                                      int i_matches
                                                                                      Definition: model-meat.hpp:1315
                                                                                      -
                                                                                      rules_
                                                                                      Data_Rule_Type * rules_
                                                                                      Definition: model-meat.hpp:380
                                                                                      -
                                                                                      count_fun_
                                                                                      Data_Counter_Type count_fun_
                                                                                      Definition: model-meat.hpp:327
                                                                                      +
                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
                                                                                      update_normalizing_constant
                                                                                      double update_normalizing_constant(const double *params, const double *support, size_t k, size_t n)
                                                                                      Definition: model-meat.hpp:9
                                                                                      -
                                                                                      force_new
                                                                                      bool force_new
                                                                                      Definition: model-meat.hpp:437
                                                                                      -
                                                                                      j
                                                                                      size_t j
                                                                                      Definition: model-meat.hpp:1297
                                                                                      -
                                                                                      likelihood_
                                                                                      double likelihood_(const double *stats_target, const std::vector< double > &params, const double normalizing_constant, size_t n_params, bool log_=false)
                                                                                      Definition: model-meat.hpp:63
                                                                                      -
                                                                                      Data_Counter_Type
                                                                                      template Data_Counter_Type
                                                                                      Definition: model-meat.hpp:1406
                                                                                      -
                                                                                      counter
                                                                                      Data_Counter_Type & counter
                                                                                      Definition: model-meat.hpp:320
                                                                                      -
                                                                                      a
                                                                                      size_t a
                                                                                      Definition: model-meat.hpp:1287
                                                                                      -
                                                                                      r
                                                                                      double r
                                                                                      Definition: model-meat.hpp:1291
                                                                                      -
                                                                                      set_counters
                                                                                      support_fun set_counters(counters)
                                                                                      -
                                                                                      delete_rules_dyn
                                                                                      this delete_rules_dyn
                                                                                      Definition: model-meat.hpp:425
                                                                                      -
                                                                                      params
                                                                                      const std::vector< double > & params
                                                                                      Definition: model-meat.hpp:1189
                                                                                      -
                                                                                      size
                                                                                      return arrays2support size() - 1u
                                                                                      -
                                                                                      rules
                                                                                      Data_Rule_Type & rules
                                                                                      Definition: model-meat.hpp:371
                                                                                      -
                                                                                      k
                                                                                      size_t k
                                                                                      Definition: model-meat.hpp:1294
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: model-meat.hpp:1195
                                                                                      -
                                                                                      MODEL_TEMPLATE_ARGS
                                                                                      #define MODEL_TEMPLATE_ARGS()
                                                                                      Definition: model-meat.hpp:128
                                                                                      -
                                                                                      delete_rules
                                                                                      this delete_rules
                                                                                      Definition: model-meat.hpp:386
                                                                                      -
                                                                                      counters_
                                                                                      Data_Counter_Type * counters_
                                                                                      Definition: model-meat.hpp:344
                                                                                      -
                                                                                      init_fun_
                                                                                      Data_Counter_Type Counter_fun_type< Array_Type, Data_Counter_Type > init_fun_
                                                                                      Definition: model-meat.hpp:328
                                                                                      -
                                                                                      rules_dyn
                                                                                      this rules_dyn
                                                                                      Definition: model-meat.hpp:424
                                                                                      -
                                                                                      tmp_counts
                                                                                      std::vector< double > tmp_counts
                                                                                      Definition: model-meat.hpp:1368
                                                                                      -
                                                                                      probs
                                                                                      std::vector< double > & probs
                                                                                      Definition: model-meat.hpp:1298
                                                                                      -
                                                                                      set_rules
                                                                                      support_fun set_rules(rules)
                                                                                      -
                                                                                      Data_Rule_Type
                                                                                      template Data_Rule_Type
                                                                                      Definition: model-meat.hpp:1406
                                                                                      -
                                                                                      fun_
                                                                                      Data_Counter_Type fun_
                                                                                      Definition: model-meat.hpp:361
                                                                                      -
                                                                                      urand
                                                                                      std::uniform_real_distribution urand(0, 1)
                                                                                      -
                                                                                      MODEL_TYPE
                                                                                      #define MODEL_TYPE()
                                                                                      Definition: model-meat.hpp:125
                                                                                      -
                                                                                      locator
                                                                                      MapVec_type< double, size_t >::const_iterator locator
                                                                                      Definition: model-meat.hpp:456
                                                                                      -
                                                                                      rule_fun_
                                                                                      Data_Rule_Dyn_Type rule_fun_
                                                                                      Definition: model-meat.hpp:404
                                                                                      -
                                                                                      stats
                                                                                      const std::vector< double > & stats
                                                                                      Definition: model-meat.hpp:1313
                                                                                      -
                                                                                      pset_arrays
                                                                                      return this pset_arrays[a][j]
                                                                                      Definition: model-meat.hpp:1349
                                                                                      -
                                                                                      data_
                                                                                      Data_Counter_Type Counter_fun_type< Array_Type, Data_Counter_Type > Data_Counter_Type data_
                                                                                      Definition: model-meat.hpp:330
                                                                                      -
                                                                                      temp_stats
                                                                                      std::vector< double > temp_stats(params.size())
                                                                                      -
                                                                                      set_rules_dyn
                                                                                      support_fun set_rules_dyn(rules_dyn)
                                                                                      -
                                                                                      cumprob
                                                                                      double cumprob
                                                                                      Definition: model-meat.hpp:1292
                                                                                      -
                                                                                      key
                                                                                      std::vector< double > key
                                                                                      Definition: model-meat.hpp:455
                                                                                      -
                                                                                      MODEL_TEMPLATE
                                                                                      #define MODEL_TEMPLATE(a, b)
                                                                                      Definition: model-meat.hpp:131
                                                                                      +
                                                                                      likelihood_
                                                                                      double likelihood_(const double *stats_target, const std::vector< double > &params, const double normalizing_constant, size_t n_params, bool log_=false)
                                                                                      Definition: model-meat.hpp:85
                                                                                      +
                                                                                      counters_
                                                                                      Data_Type * counters_
                                                                                      Definition: statscounter-meat.hpp:54
                                                                                      MapVec_type
                                                                                      std::unordered_map< std::vector< Ta >, Tb, vecHasher< Ta > > MapVec_type
                                                                                      Definition: typedefs.hpp:128
                                                                                      Rule_fun_type
                                                                                      std::function< bool(const Array_Type &, size_t, size_t, Data_Type &)> Rule_fun_type
                                                                                      Definition: typedefs.hpp:190
                                                                                      @@ -1699,7 +1781,7 @@ diff --git a/modules.html b/modules.html index 1dac8357d..4766c8fbe 100644 --- a/modules.html +++ b/modules.html @@ -110,7 +110,7 @@ diff --git a/namespace_c_h_e_c_k.html b/namespace_c_h_e_c_k.html index 4d4d95bc9..7fc7ab0eb 100644 --- a/namespace_c_h_e_c_k.html +++ b/namespace_c_h_e_c_k.html @@ -186,7 +186,7 @@

                                                                                      • CHECK
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                      diff --git a/namespace_e_x_i_s_t_s.html b/namespace_e_x_i_s_t_s.html index 8fca7a9d4..774bb8099 100644 --- a/namespace_e_x_i_s_t_s.html +++ b/namespace_e_x_i_s_t_s.html @@ -240,7 +240,7 @@

                                                                                      • EXISTS
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                      diff --git a/namespacebarry.html b/namespacebarry.html index 530af7e71..f87f24c8b 100644 --- a/namespacebarry.html +++ b/namespacebarry.html @@ -116,7 +116,7 @@ diff --git a/namespacebarry_1_1counters.html b/namespacebarry_1_1counters.html index e9086be0a..eceaca2cd 100644 --- a/namespacebarry_1_1counters.html +++ b/namespacebarry_1_1counters.html @@ -115,7 +115,7 @@ diff --git a/namespacebarry_1_1counters_1_1network.html b/namespacebarry_1_1counters_1_1network.html index 3065b3b2b..00b315bc9 100644 --- a/namespacebarry_1_1counters_1_1network.html +++ b/namespacebarry_1_1counters_1_1network.html @@ -102,7 +102,7 @@ diff --git a/namespacedefm.html b/namespacedefm.html index 337ee925d..0db6ec95a 100644 --- a/namespacedefm.html +++ b/namespacedefm.html @@ -102,7 +102,7 @@ diff --git a/namespacegeese.html b/namespacegeese.html index 08f9e0976..ebe17925f 100644 --- a/namespacegeese.html +++ b/namespacegeese.html @@ -102,7 +102,7 @@ diff --git a/namespacemembers.html b/namespacemembers.html index 1409dbc9d..0106ef07a 100644 --- a/namespacemembers.html +++ b/namespacemembers.html @@ -124,7 +124,7 @@ diff --git a/namespacemembers_vars.html b/namespacemembers_vars.html index 496ba6391..e52f4adab 100644 --- a/namespacemembers_vars.html +++ b/namespacemembers_vars.html @@ -124,7 +124,7 @@ diff --git a/navtreedata.js b/navtreedata.js index d705cef23..28b7e18fc 100644 --- a/navtreedata.js +++ b/navtreedata.js @@ -45,7 +45,7 @@ var NAVTREE = [ "File List", "files.html", "files_dup" ], [ "File Members", "globals.html", [ [ "All", "globals.html", "globals_dup" ], - [ "Functions", "globals_func.html", "globals_func" ], + [ "Functions", "globals_func.html", null ], [ "Variables", "globals_vars.html", null ], [ "Typedefs", "globals_type.html", null ], [ "Macros", "globals_defs.html", null ] @@ -57,12 +57,11 @@ var NAVTREE = var NAVTREEINDEX = [ "annotated.html", 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-"typedefs_8hpp.html#ab1d4f47a245caa5ee58da49231c054ca":[3,0,0,0,40,9], -"typedefs_8hpp.html#ab9ddeecf87d68d3f44dd6a94b10aa786":[3,0,0,0,40,13], -"typedefs_8hpp.html#acf8ecf93ddfb75456112712630f8f722":[3,0,0,0,40,20], -"typedefs_8hpp.html#ad7626021d4acb1dfc9419e667923a01f":[3,0,0,0,40,3], -"typedefs_8hpp.html#ad76d02e8eb6d20715d333b72394b0648":[3,0,0,0,40,23], -"typedefs_8hpp.html#adfb2ee3c0edfa46d47dc24cbbfabb11b":[3,0,0,0,40,2], -"typedefs_8hpp.html#aed8ddfe5ae95bf4d6f76221ce06566fb":[3,0,0,0,40,11], -"typedefs_8hpp.html#af6f9c021aa2e49b1cb82fbd32026f1dc":[3,0,0,0,40,12], -"typedefs_8hpp_source.html":[3,0,0,0,40] -}; diff --git a/network-css_8hpp.html b/network-css_8hpp.html index bd59d09b7..6dfce319e 100644 --- a/network-css_8hpp.html +++ b/network-css_8hpp.html @@ -118,11 +118,11 @@   #define CSS_MATCH_TYPE()   -#define CSS_CASE_TRUTH()   if ((i < n) && (j < n)) +#define CSS_CASE_TRUTH()   if ((i < n) && (j < n))   #define CSS_TRUE_CELLS()   -#define CSS_CASE_PERCEIVED()   else if (((i >= s) && (i < e)) & ((j >= s) && (j < e))) +#define CSS_CASE_PERCEIVED()   else if (((i >= s) && (i < e)) & ((j >= s) && (j < e)))   #define CSS_PERCEIVED_CELLS()   @@ -207,16 +207,16 @@

                                                                                      Value:
                                                                                      std::string name_ = (name);\
                                                                                      -
                                                                                      for (size_t i = 0u; i < end_.size(); ++i) { \
                                                                                      -
                                                                                      std::string tmpname = name_ + " (" + std::to_string(i) + ")" + \
                                                                                      +
                                                                                      for (size_t i = 0u; i < end_.size(); ++i) { \
                                                                                      +
                                                                                      std::string tmpname = name_ + " (" + std::to_string(i) + ")" + \
                                                                                      ((counter_type == 1u) ? " (only perceiver)" : ((counter_type == 2u)? " (only alters)": ""));\
                                                                                      counters->add_counter(tmp_count, tmp_init, nullptr, \
                                                                                      -
                                                                                      NetCounterData({netsize, i == 0u ? netsize : end_[i-1], end_[i], counter_type, i}, {}),\
                                                                                      +
                                                                                      NetCounterData({netsize, i == 0u ? netsize : end_[i-1], end_[i], counter_type, i}, {}),\
                                                                                      tmpname);}
                                                                                      NetCounterData
                                                                                      Data class used to store arbitrary size_t or double vectors.
                                                                                      Definition: network.hpp:56
                                                                                      name
                                                                                      Data_Type &&counter_ name(std::move(counter_.name))
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      name_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string name_
                                                                                      Definition: counters-meat.hpp:183
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83

                                                                                      Definition at line 81 of file network-css.hpp.

                                                                                      @@ -251,7 +251,7 @@

                                                                                      #define CSS_CASE_PERCEIVED ( ) -    else if (((i >= s) && (i < e)) & ((j >= s) && (j < e))) +    else if (((i >= s) && (i < e)) & ((j >= s) && (j < e)))
                                                                                      @@ -270,7 +270,7 @@

                                                                                      #define CSS_CASE_TRUTH ( ) -    if ((i < n) && (j < n)) +    if ((i < n) && (j < n))

                                                                                      @@ -293,9 +293,9 @@

                                                                                      -Value:
                                                                                      for (size_t i = 0u; i < end_.size(); ++i) {\
                                                                                      -
                                                                                      if (i == 0u) continue; \
                                                                                      -
                                                                                      else if (end_[i] < end_[i-1u]) \
                                                                                      +Value:
                                                                                      for (size_t i = 0u; i < end_.size(); ++i) {\
                                                                                      +
                                                                                      if (i == 0u) continue; \
                                                                                      +
                                                                                      else if (end_[i] < end_[i-1u]) \
                                                                                      throw std::logic_error("Endpoints should be specified in order.");}

                                                                                      Definition at line 76 of file network-css.hpp.

                                                                                      @@ -390,12 +390,12 @@

                                                                                      -Value:
                                                                                      size_t i_ = i - s; \
                                                                                      +Value:
                                                                                      size_t i_ = i - s; \
                                                                                      size_t j_ = j - s; \
                                                                                      CSS_MATCH_TYPE() \
                                                                                      -
                                                                                      double tji = static_cast<double>(Array(j - s, i - s, false)); \
                                                                                      -
                                                                                      double pji = static_cast<double>(Array(j, i, false)); \
                                                                                      -
                                                                                      double tij = static_cast<double>(Array(i - s, j - s, false));
                                                                                      +
                                                                                      double tji = static_cast<double>(Array(j - s, i - s, false)); \
                                                                                      +
                                                                                      double pji = static_cast<double>(Array(j, i, false)); \
                                                                                      +
                                                                                      double tij = static_cast<double>(Array(i - s, j - s, false));
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84

                                                                                      Definition at line 55 of file network-css.hpp.

                                                                                      @@ -442,12 +442,12 @@

                                                                                      -Value:
                                                                                      size_t i_ = i; \
                                                                                      +Value:
                                                                                      size_t i_ = i; \
                                                                                      size_t j_ = j; \
                                                                                      CSS_MATCH_TYPE() \
                                                                                      -
                                                                                      double tji = static_cast<double>(Array(j, i, false)); \
                                                                                      -
                                                                                      double pij = static_cast<double>(Array(i + s, j + s, false)); \
                                                                                      -
                                                                                      double pji = static_cast<double>(Array(j + s, i + s, false));
                                                                                      +
                                                                                      double tji = static_cast<double>(Array(j, i, false)); \
                                                                                      +
                                                                                      double pij = static_cast<double>(Array(i + s, j + s, false)); \
                                                                                      +
                                                                                      double pji = static_cast<double>(Array(j + s, i + s, false));

                                                                                      Definition at line 39 of file network-css.hpp.

                                                                                      @@ -1259,7 +1259,7 @@

                                                                                      • include
                                                                                      • barry
                                                                                      • counters
                                                                                      • network-css.hpp
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

                                                                                      diff --git a/network-css_8hpp_source.html b/network-css_8hpp_source.html index 7d77ff745..8efacc3c7 100644 --- a/network-css_8hpp_source.html +++ b/network-css_8hpp_source.html @@ -874,7 +874,7 @@ diff --git a/network_8hpp.html b/network_8hpp.html index 7334ce260..23829c6bf 100644 --- a/network_8hpp.html +++ b/network_8hpp.html @@ -133,21 +133,21 @@

                                                                                      Macros

                                                                                      -#define NET_C_DATA_IDX(i)   (data.indices[i]) +#define NET_C_DATA_IDX(i)   (data.indices[i])   -#define NET_C_DATA_NUM(i)   (data.numbers[i]) +#define NET_C_DATA_NUM(i)   (data.numbers[i])  
                                                                                      Macros for defining counters
                                                                                      -#define NETWORK_COUNTER(a) +#define NETWORK_COUNTER(a)   -#define NETWORK_COUNTER_LAMBDA(a) +#define NETWORK_COUNTER_LAMBDA(a)   -#define NETWORKDENSE_COUNTER_LAMBDA(a) +#define NETWORKDENSE_COUNTER_LAMBDA(a)  
                                                                                      Macros for defining rules
                                                                                      -#define NETWORK_RULE(a) +#define NETWORK_RULE(a)   -#define NETWORK_RULE_LAMBDA(a) +#define NETWORK_RULE_LAMBDA(a)   - +

                                                                                      @@ -255,7 +255,7 @@

                                                                                      template<typename Tnet = Network>
                                                                                      void rules_zerodiag (NetRules< Tnet > *rules)
                                                                                      void rules_zerodiag (NetRules< Tnet > *rules)
                                                                                       Number of edges. More...
                                                                                       
                                                                                      @@ -333,8 +333,8 @@

                                                                                      #define NET_C_DATA_IDX

                                                                                      - - + +
                                                                                      (  i)   (data.indices[i])i)   (data.indices[i])

                                                                                      @@ -353,8 +353,8 @@

                                                                                      #define NET_C_DATA_NUM (   - i) -    (data.numbers[i]) + i) +    (data.numbers[i])

                                                                                      @@ -373,18 +373,17 @@

                                                                                      #define NETWORK_COUNTER (   - a) + a)

                                                                                      Value:
                                                                                      template<typename Tnet = Network>\
                                                                                      -
                                                                                      inline double (a) (const Tnet & Array, size_t i, size_t j, NetCounterData & data)
                                                                                      +
                                                                                      inline double (a) (const Tnet & Array, size_t i, size_t j, NetCounterData & data)
                                                                                      NetCounterData
                                                                                      Data class used to store arbitrary size_t or double vectors.
                                                                                      Definition: network.hpp:56
                                                                                      data
                                                                                      Data_Type &&counter_ data(std::move(counter_.data))
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84
                                                                                      -
                                                                                      a
                                                                                      size_t a
                                                                                      Definition: model-meat.hpp:1287
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83

                                                                                      Function for definition of a network counter function

                                                                                      Definition at line 114 of file network.hpp.

                                                                                      @@ -401,13 +400,13 @@

                                                                                      #define NETWORK_COUNTER_LAMBDA (   - a) + a)

                                                                                      -Value:
                                                                                      Counter_fun_type<Tnet, NetCounterData> a = \
                                                                                      -
                                                                                      [](const Tnet & Array, size_t i, size_t j, NetCounterData & data)
                                                                                      +Value:
                                                                                      Counter_fun_type<Tnet, NetCounterData> a = \
                                                                                      +
                                                                                      [](const Tnet & Array, size_t i, size_t j, NetCounterData & data)
                                                                                      Counter_fun_type
                                                                                      std::function< double(const Array_Type &, size_t, size_t, Data_Type &)> Counter_fun_type
                                                                                      Counter and rule functions.
                                                                                      Definition: typedefs.hpp:187

                                                                                      Lambda function for definition of a network counter function

                                                                                      @@ -425,13 +424,13 @@

                                                                                      #define NETWORK_RULE (   - a) + a)

                                                                                      Value:
                                                                                      template<typename Tnet = Network>\
                                                                                      -
                                                                                      inline bool (a) (const Tnet & Array, size_t i, size_t j, bool & data)
                                                                                      +
                                                                                      inline bool (a) (const Tnet & Array, size_t i, size_t j, bool & data)

                                                                                      Function for definition of a network counter function

                                                                                      Definition at line 133 of file network.hpp.

                                                                                      @@ -448,13 +447,13 @@

                                                                                      #define NETWORK_RULE_LAMBDA (   - a) + a)

                                                                                      -Value:
                                                                                      Rule_fun_type<Tnet, bool> a = \
                                                                                      -
                                                                                      [](const Tnet & Array, size_t i, size_t j, bool & data)
                                                                                      +Value:
                                                                                      Rule_fun_type<Tnet, bool> a = \
                                                                                      +
                                                                                      [](const Tnet & Array, size_t i, size_t j, bool & data)
                                                                                      Rule_fun_type
                                                                                      std::function< bool(const Array_Type &, size_t, size_t, Data_Type &)> Rule_fun_type
                                                                                      Definition: typedefs.hpp:190

                                                                                      Lambda function for definition of a network counter function

                                                                                      @@ -472,13 +471,13 @@

                                                                                      #define NETWORKDENSE_COUNTER_LAMBDA (   - a) + a)

                                                                                      -Value:
                                                                                      Counter_fun_type<NetworkDense, NetCounterData> a = \
                                                                                      -
                                                                                      [](const NetworkDense & Array, size_t i, size_t j, NetCounterData & data)
                                                                                      +Value:
                                                                                      Counter_fun_type<NetworkDense, NetCounterData> a = \
                                                                                      +
                                                                                      [](const NetworkDense & Array, size_t i, size_t j, NetCounterData & data)
                                                                                      BArrayDense
                                                                                      Baseline class for binary arrays.
                                                                                      Definition: barraydense-bones.hpp:33

                                                                                      Definition at line 123 of file network.hpp.

                                                                                      @@ -683,7 +682,7 @@

                                                                                      • include
                                                                                      • barry
                                                                                      • counters
                                                                                      • network.hpp
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

                                                                                      diff --git a/network_8hpp_source.html b/network_8hpp_source.html index d72d417a7..9450c7f0a 100644 --- a/network_8hpp_source.html +++ b/network_8hpp_source.html @@ -224,13 +224,13 @@
                                                                                      178  NETWORK_COUNTER_LAMBDA(tmp_count)
                                                                                      179  {
                                                                                      180 
                                                                                      -
                                                                                      181  if (i == j)
                                                                                      +
                                                                                      181  if (i == j)
                                                                                      182  return 0.0;
                                                                                      183 
                                                                                      184  double res = 0.0;
                                                                                      185 
                                                                                      186  // i is sending its first tie
                                                                                      -
                                                                                      187  if (Array.row(i).size() == 1u && Array.col(i).size() == 0u)
                                                                                      +
                                                                                      187  if (Array.row(i).size() == 1u && Array.col(i).size() == 0u)
                                                                                      188  res -= 1.0;
                                                                                      189 
                                                                                      190  // j is receiving its first tie, meaning that he
                                                                                      @@ -264,13 +264,13 @@
                                                                                      218  NETWORKDENSE_COUNTER_LAMBDA(tmp_count)
                                                                                      219  {
                                                                                      220 
                                                                                      -
                                                                                      221  if (i == j)
                                                                                      +
                                                                                      221  if (i == j)
                                                                                      222  return 0.0;
                                                                                      223 
                                                                                      224  double res = 0.0;
                                                                                      225 
                                                                                      226  // Checking the in and out degree
                                                                                      -
                                                                                      227  if (Array.rowsum(i) == 1u && Array.colsum(i) == 0u)
                                                                                      +
                                                                                      227  if (Array.rowsum(i) == 1u && Array.colsum(i) == 0u)
                                                                                      228  res -= 1.0;
                                                                                      229 
                                                                                      230  // Now looking at j
                                                                                      @@ -307,11 +307,11 @@
                                                                                      262  // Is there any tie at ji? If not, then we have a new mutual!
                                                                                      263  // but this only makes sence if the jth row and ith column exists
                                                                                      264  // if ((Array.nrow() > j) && (Array.ncol() > i))
                                                                                      -
                                                                                      265  if (i == j)
                                                                                      +
                                                                                      265  if (i == j)
                                                                                      266  return 0.0;
                                                                                      267 
                                                                                      268  // printf_barry("Checking if it is empty or not at (%i, %i)... ", i, j);
                                                                                      -
                                                                                      269  if (!Array.is_empty(j, i, false))
                                                                                      +
                                                                                      269  if (!Array.is_empty(j, i, false))
                                                                                      270  {
                                                                                      271  // printf_barry("Yes, mutual.\n");
                                                                                      272  return 1.0;
                                                                                      @@ -427,10 +427,10 @@
                                                                                      382  // Need to check the receiving, if he/she is getting a new set of stars
                                                                                      383  // when looking at triads
                                                                                      384 
                                                                                      -
                                                                                      385  if (Array.row(i).size() == 1u)
                                                                                      +
                                                                                      385  if (Array.row(i).size() == 1u)
                                                                                      386  return 0.0;
                                                                                      387 
                                                                                      -
                                                                                      388  return static_cast<double>( Array.row(i).size() - 1.0);
                                                                                      +
                                                                                      388  return static_cast<double>( Array.row(i).size() - 1.0);
                                                                                      389 
                                                                                      390  };
                                                                                      391 
                                                                                      @@ -465,7 +465,7 @@
                                                                                      420  // return 0.0;
                                                                                      421 
                                                                                      422  // return static_cast<double>(nties - 1.0);
                                                                                      -
                                                                                      423  return static_cast<double>(Array.rowsum(i) - 1);
                                                                                      +
                                                                                      423  return static_cast<double>(Array.rowsum(i) - 1);
                                                                                      424 
                                                                                      425  };
                                                                                      426 
                                                                                      @@ -490,55 +490,55 @@
                                                                                      445  {
                                                                                      446 
                                                                                      447  // Self ties do not count
                                                                                      -
                                                                                      448  if (i == j)
                                                                                      +
                                                                                      448  if (i == j)
                                                                                      449  return 0.0;
                                                                                      450 
                                                                                      451  double ans = 0.0;
                                                                                      452 
                                                                                      453  // Case 1: i-j, i-k, j-k
                                                                                      -
                                                                                      454  if (Array.row(j).size() < Array.row(i).size())
                                                                                      +
                                                                                      454  if (Array.row(j).size() < Array.row(i).size())
                                                                                      455  {
                                                                                      456 
                                                                                      457  for (auto j_row = Array.row(j).begin(); j_row != Array.row(j).end(); ++j_row)
                                                                                      -
                                                                                      458  if ((j != j_row->first) && (i != j_row->first) && !Array.is_empty(i, j_row->first, false))
                                                                                      +
                                                                                      458  if ((j != j_row->first) && (i != j_row->first) && !Array.is_empty(i, j_row->first, false))
                                                                                      459  ans += 1.0;
                                                                                      460 
                                                                                      461  } else {
                                                                                      462 
                                                                                      -
                                                                                      463  for (auto i_row = Array.row(i).begin(); i_row != Array.row(i).end(); ++i_row)
                                                                                      -
                                                                                      464  if ((i != i_row->first) && (i_row->first != j) && !Array.is_empty(j, i_row->first, false))
                                                                                      +
                                                                                      463  for (auto i_row = Array.row(i).begin(); i_row != Array.row(i).end(); ++i_row)
                                                                                      +
                                                                                      464  if ((i != i_row->first) && (i_row->first != j) && !Array.is_empty(j, i_row->first, false))
                                                                                      465  ans += 1.0;
                                                                                      466 
                                                                                      467  }
                                                                                      468 
                                                                                      469  // Case 2: i-j, i-k, k-j
                                                                                      -
                                                                                      470  if (Array.row(i).size() > Array.col(j).size())
                                                                                      +
                                                                                      470  if (Array.row(i).size() > Array.col(j).size())
                                                                                      471  {
                                                                                      472 
                                                                                      473  for (auto j_col = Array.col(j).begin(); j_col != Array.col(j).end(); ++j_col)
                                                                                      -
                                                                                      474  if ((j != j_col->first) && (i != j_col->first) && !Array.is_empty(i, j_col->first, false))
                                                                                      +
                                                                                      474  if ((j != j_col->first) && (i != j_col->first) && !Array.is_empty(i, j_col->first, false))
                                                                                      475  ans += 1.0;
                                                                                      476 
                                                                                      477  } else {
                                                                                      478 
                                                                                      -
                                                                                      479  for (auto i_row = Array.row(i).begin(); i_row != Array.row(i).end(); ++i_row)
                                                                                      -
                                                                                      480  if ((i != i_row->first) && (j != i_row->first) && !Array.is_empty(i_row->first, j, false))
                                                                                      +
                                                                                      479  for (auto i_row = Array.row(i).begin(); i_row != Array.row(i).end(); ++i_row)
                                                                                      +
                                                                                      480  if ((i != i_row->first) && (j != i_row->first) && !Array.is_empty(i_row->first, j, false))
                                                                                      481  ans += 1.0;
                                                                                      482 
                                                                                      483  }
                                                                                      484 
                                                                                      485  // Case 3: i->j, k->j, k->i
                                                                                      -
                                                                                      486  if (Array.col(i).size() > Array.col(j).size())
                                                                                      +
                                                                                      486  if (Array.col(i).size() > Array.col(j).size())
                                                                                      487  {
                                                                                      488 
                                                                                      489  for (auto j_col = Array.col(j).begin(); j_col != Array.col(j).end(); ++j_col)
                                                                                      -
                                                                                      490  if ((j != j_col->first) && (i != j_col->first) && !Array.is_empty(j_col->first, i, false))
                                                                                      +
                                                                                      490  if ((j != j_col->first) && (i != j_col->first) && !Array.is_empty(j_col->first, i, false))
                                                                                      491  ans += 1.0;
                                                                                      492 
                                                                                      493  } else {
                                                                                      494 
                                                                                      -
                                                                                      495  for (auto i_col = Array.col(i).begin(); i_col != Array.col(i).end(); ++i_col)
                                                                                      -
                                                                                      496  if ((i != i_col->first) && (j != i_col->first) && !Array.is_empty(i_col->first, j, false))
                                                                                      +
                                                                                      495  for (auto i_col = Array.col(i).begin(); i_col != Array.col(i).end(); ++i_col)
                                                                                      +
                                                                                      496  if ((i != i_col->first) && (j != i_col->first) && !Array.is_empty(i_col->first, j, false))
                                                                                      497  ans += 1.0;
                                                                                      498 
                                                                                      499  }
                                                                                      @@ -583,38 +583,38 @@
                                                                                      538  size_t N = Array.nrow();
                                                                                      539 
                                                                                      540  // Self ties do not count
                                                                                      -
                                                                                      541  if (i == j)
                                                                                      +
                                                                                      541  if (i == j)
                                                                                      542  return 0.0;
                                                                                      543 
                                                                                      544  // This is the first i sends, so nothing will change
                                                                                      -
                                                                                      545  if (Array.rowsum(i) == BARRY_ZERO_NETWORK_DENSE)
                                                                                      +
                                                                                      545  if (Array.rowsum(i) == BARRY_ZERO_NETWORK_DENSE)
                                                                                      546  return 0.0;
                                                                                      547 
                                                                                      548 
                                                                                      549  double ans = 0.0;
                                                                                      -
                                                                                      550  for (size_t k = 0u; k < N; ++k)
                                                                                      +
                                                                                      550  for (size_t k = 0u; k < N; ++k)
                                                                                      551  {
                                                                                      552 
                                                                                      553  // In all cases k receives, so if not, then continue
                                                                                      -
                                                                                      554  if ((Array.colsum(k) == BARRY_ZERO_NETWORK_DENSE) && (Array.rowsum(k) == BARRY_ZERO_NETWORK_DENSE))
                                                                                      +
                                                                                      554  if ((Array.colsum(k) == BARRY_ZERO_NETWORK_DENSE) && (Array.rowsum(k) == BARRY_ZERO_NETWORK_DENSE))
                                                                                      555  continue;
                                                                                      556 
                                                                                      -
                                                                                      557  if ((j != k) & (i != k))
                                                                                      +
                                                                                      557  if ((j != k) & (i != k))
                                                                                      558  {
                                                                                      559 
                                                                                      -
                                                                                      560  if (dat[k * N + i] != BARRY_ZERO_NETWORK_DENSE)
                                                                                      +
                                                                                      560  if (dat[k * N + i] != BARRY_ZERO_NETWORK_DENSE)
                                                                                      561  {
                                                                                      562  // Case 1: i-j, i-k, j-k
                                                                                      -
                                                                                      563  if (dat[k * N + j])
                                                                                      +
                                                                                      563  if (dat[k * N + j])
                                                                                      564  ans += 1.0;
                                                                                      565 
                                                                                      566  // Case 2: i-j, i-k, k-j
                                                                                      -
                                                                                      567  if (dat[j * N + k] != BARRY_ZERO_NETWORK_DENSE)
                                                                                      +
                                                                                      567  if (dat[j * N + k] != BARRY_ZERO_NETWORK_DENSE)
                                                                                      568  ans += 1.0;
                                                                                      569  }
                                                                                      570 
                                                                                      571  // Case 3: i-j, k-i, k-j
                                                                                      -
                                                                                      572  if ((dat[i * N + k] != BARRY_ZERO_NETWORK_DENSE) && (dat[j * N + k] != BARRY_ZERO_NETWORK_DENSE))
                                                                                      +
                                                                                      572  if ((dat[i * N + k] != BARRY_ZERO_NETWORK_DENSE) && (dat[j * N + k] != BARRY_ZERO_NETWORK_DENSE))
                                                                                      573  ans += 1.0;
                                                                                      574 
                                                                                      575  }
                                                                                      @@ -658,21 +658,21 @@
                                                                                      613  NETWORK_COUNTER_LAMBDA(tmp_count)
                                                                                      614  {
                                                                                      615 
                                                                                      -
                                                                                      616  if (i == j)
                                                                                      +
                                                                                      616  if (i == j)
                                                                                      617  return 0.0;
                                                                                      618 
                                                                                      619  double ans = 0.0;
                                                                                      -
                                                                                      620  if (Array.col(i).size() < Array.row(j).size())
                                                                                      +
                                                                                      620  if (Array.col(i).size() < Array.row(j).size())
                                                                                      621  {
                                                                                      622 
                                                                                      -
                                                                                      623  for (auto i_col = Array.col(i).begin(); i_col != Array.col(i).end(); ++i_col)
                                                                                      -
                                                                                      624  if ((i != i_col->first) && (j != i_col->first) && !Array.is_empty(j, i_col->first, false))
                                                                                      +
                                                                                      623  for (auto i_col = Array.col(i).begin(); i_col != Array.col(i).end(); ++i_col)
                                                                                      +
                                                                                      624  if ((i != i_col->first) && (j != i_col->first) && !Array.is_empty(j, i_col->first, false))
                                                                                      625  ans += 1.0;
                                                                                      626 
                                                                                      627  } else {
                                                                                      628 
                                                                                      629  for (auto j_row = Array.row(j).begin(); j_row != Array.row(j).end(); ++j_row)
                                                                                      -
                                                                                      630  if ((j != j_row->first) && (i != j_row->first) && !Array.is_empty(j_row->first, i, false))
                                                                                      +
                                                                                      630  if ((j != j_row->first) && (i != j_row->first) && !Array.is_empty(j_row->first, i, false))
                                                                                      631  ans += 1.0;
                                                                                      632 
                                                                                      633  }
                                                                                      @@ -713,7 +713,7 @@
                                                                                      668  NETWORKDENSE_COUNTER_LAMBDA(tmp_count)
                                                                                      669  {
                                                                                      670 
                                                                                      -
                                                                                      671  if (i == j)
                                                                                      +
                                                                                      671  if (i == j)
                                                                                      672  return 0.0;
                                                                                      673 
                                                                                      674  // i->j->k->i
                                                                                      @@ -721,20 +721,20 @@
                                                                                      676  #ifdef __OPENM
                                                                                      677  #pragma omp simd reduction(+:ans)
                                                                                      678  #endif
                                                                                      -
                                                                                      679  for (size_t k = 0u; k < Array.nrow(); ++k)
                                                                                      +
                                                                                      679  for (size_t k = 0u; k < Array.nrow(); ++k)
                                                                                      680  {
                                                                                      681 
                                                                                      682  // If isolated, then next
                                                                                      -
                                                                                      683  if (Array.colsum(k) == BARRY_ZERO_NETWORK_DENSE)
                                                                                      +
                                                                                      683  if (Array.colsum(k) == BARRY_ZERO_NETWORK_DENSE)
                                                                                      684  continue;
                                                                                      685 
                                                                                      -
                                                                                      686  if (Array.rowsum(k) == BARRY_ZERO_NETWORK_DENSE)
                                                                                      +
                                                                                      686  if (Array.rowsum(k) == BARRY_ZERO_NETWORK_DENSE)
                                                                                      687  continue;
                                                                                      688 
                                                                                      -
                                                                                      689  if (i != k && j != k)
                                                                                      +
                                                                                      689  if (i != k && j != k)
                                                                                      690  {
                                                                                      691 
                                                                                      -
                                                                                      692  if ((Array(j, k) != BARRY_ZERO_NETWORK_DENSE) && (Array(k, i) != BARRY_ZERO_NETWORK_DENSE))
                                                                                      +
                                                                                      692  if ((Array(j, k) != BARRY_ZERO_NETWORK_DENSE) && (Array(k, i) != BARRY_ZERO_NETWORK_DENSE))
                                                                                      693  ans += 1.0;
                                                                                      694 
                                                                                      695  }
                                                                                      @@ -835,12 +835,12 @@
                                                                                      790 
                                                                                      791  // In case of the first, we need to add
                                                                                      792  int ideg = 0;
                                                                                      -
                                                                                      793  for (size_t k = 0u; k < Array.nrow(); ++k)
                                                                                      +
                                                                                      793  for (size_t k = 0u; k < Array.nrow(); ++k)
                                                                                      794  {
                                                                                      -
                                                                                      795  if (k == j)
                                                                                      +
                                                                                      795  if (k == j)
                                                                                      796  continue;
                                                                                      797 
                                                                                      -
                                                                                      798  if (Array(k, j) != BARRY_ZERO_NETWORK_DENSE)
                                                                                      +
                                                                                      798  if (Array(k, j) != BARRY_ZERO_NETWORK_DENSE)
                                                                                      799  ideg++;
                                                                                      800 
                                                                                      801  }
                                                                                      @@ -883,12 +883,12 @@
                                                                                      838  {
                                                                                      839 
                                                                                      840  // In case of the first, we need to add
                                                                                      -
                                                                                      841  if (Array.row(i).size() == 1u)
                                                                                      +
                                                                                      841  if (Array.row(i).size() == 1u)
                                                                                      842  return 1.0;
                                                                                      843 
                                                                                      844  return
                                                                                      -
                                                                                      845  pow(static_cast<double>(Array.row(i).size()), 1.5) -
                                                                                      -
                                                                                      846  pow(static_cast<double>(Array.row(i).size() - 1), 1.5)
                                                                                      +
                                                                                      845  pow(static_cast<double>(Array.row(i).size()), 1.5) -
                                                                                      +
                                                                                      846  pow(static_cast<double>(Array.row(i).size() - 1), 1.5)
                                                                                      847  ;
                                                                                      848 
                                                                                      849  };
                                                                                      @@ -912,13 +912,13 @@
                                                                                      867 
                                                                                      868  // In case of the first, we need to add
                                                                                      869  int odeg = 0;
                                                                                      -
                                                                                      870  for (size_t k = 0u; k < Array.ncol(); ++k)
                                                                                      +
                                                                                      870  for (size_t k = 0u; k < Array.ncol(); ++k)
                                                                                      871  {
                                                                                      872 
                                                                                      -
                                                                                      873  if (k == i)
                                                                                      +
                                                                                      873  if (k == i)
                                                                                      874  continue;
                                                                                      875 
                                                                                      -
                                                                                      876  if (Array(i, k) != BARRY_ZERO_NETWORK_DENSE)
                                                                                      +
                                                                                      876  if (Array(i, k) != BARRY_ZERO_NETWORK_DENSE)
                                                                                      877  odeg++;
                                                                                      878 
                                                                                      879  }
                                                                                      @@ -959,7 +959,7 @@
                                                                                      915  {
                                                                                      916 
                                                                                      917  return std::pow(std::fabs(
                                                                                      -
                                                                                      918  Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][i] -
                                                                                      +
                                                                                      918  Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][i] -
                                                                                      919  Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][j]
                                                                                      920  ), NET_C_DATA_NUM(0u));
                                                                                      921 
                                                                                      @@ -1004,7 +1004,7 @@
                                                                                      961  {
                                                                                      962 
                                                                                      963  return std::pow(NET_C_DATA_NUM(1u) * (
                                                                                      -
                                                                                      964  Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][i] -
                                                                                      +
                                                                                      964  Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][i] -
                                                                                      965  Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][j]
                                                                                      966  ), NET_C_DATA_NUM(0u));
                                                                                      967 
                                                                                      @@ -1089,7 +1089,7 @@
                                                                                      1046  NETWORK_COUNTER_LAMBDA(tmp_count)
                                                                                      1047  {
                                                                                      1048 
                                                                                      -
                                                                                      1049  return Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][i];
                                                                                      +
                                                                                      1049  return Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][i];
                                                                                      1050 
                                                                                      1051  };
                                                                                      1052 
                                                                                      @@ -1114,7 +1114,7 @@
                                                                                      1071  NETWORK_COUNTER_LAMBDA(tmp_count)
                                                                                      1072  {
                                                                                      1073 
                                                                                      -
                                                                                      1074  return Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][i] +
                                                                                      +
                                                                                      1074  return Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][i] +
                                                                                      1075  Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][j];
                                                                                      1076 
                                                                                      1077  };
                                                                                      @@ -1141,7 +1141,7 @@
                                                                                      1098 
                                                                                      1099  return
                                                                                      1100  (
                                                                                      -
                                                                                      1101  Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][i] ==
                                                                                      +
                                                                                      1101  Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][i] ==
                                                                                      1102  Array.D_ptr()->vertex_attr[NET_C_DATA_IDX(0u)][j]
                                                                                      1103  )? 1.0 : 0.0;
                                                                                      1104 
                                                                                      @@ -1218,8 +1218,8 @@
                                                                                      1176  {
                                                                                      1177 
                                                                                      1178  size_t indeg = 0u;
                                                                                      -
                                                                                      1179  for (size_t k = 0u; k < Array.nrow(); ++k)
                                                                                      -
                                                                                      1180  if (Array(k, j) != BARRY_ZERO_NETWORK_DENSE)
                                                                                      +
                                                                                      1179  for (size_t k = 0u; k < Array.nrow(); ++k)
                                                                                      +
                                                                                      1180  if (Array(k, j) != BARRY_ZERO_NETWORK_DENSE)
                                                                                      1181  indeg++;
                                                                                      1182 
                                                                                      1183  if (indeg == NET_C_DATA_IDX(0u))
                                                                                      @@ -1269,7 +1269,7 @@
                                                                                      1228  NETWORK_COUNTER_LAMBDA(tmp_count)
                                                                                      1229  {
                                                                                      1230 
                                                                                      -
                                                                                      1231  size_t d = Array.row(i).size();
                                                                                      +
                                                                                      1231  size_t d = Array.row(i).size();
                                                                                      1232  if (d == NET_C_DATA_IDX(0u))
                                                                                      1233  return 1.0;
                                                                                      1234  else if (d == (NET_C_DATA_IDX(0u) + 1))
                                                                                      @@ -1318,8 +1318,8 @@
                                                                                      1277  {
                                                                                      1278 
                                                                                      1279  size_t d = 0;
                                                                                      -
                                                                                      1280  for (size_t k = 0u; k < Array.ncol(); ++k)
                                                                                      -
                                                                                      1281  if (Array(i, k) != BARRY_ZERO_NETWORK_DENSE)
                                                                                      +
                                                                                      1280  for (size_t k = 0u; k < Array.ncol(); ++k)
                                                                                      +
                                                                                      1281  if (Array(i, k) != BARRY_ZERO_NETWORK_DENSE)
                                                                                      1282  d++;
                                                                                      1283 
                                                                                      1284  if (d == NET_C_DATA_IDX(0u))
                                                                                      @@ -1370,7 +1370,7 @@
                                                                                      1330 
                                                                                      1331  NETWORK_COUNTER_LAMBDA(tmp_count) {
                                                                                      1332 
                                                                                      -
                                                                                      1333  size_t d = Array.row(i).size();
                                                                                      +
                                                                                      1333  size_t d = Array.row(i).size();
                                                                                      1334  if (d == NET_C_DATA_IDX(0u))
                                                                                      1335  return 1.0;
                                                                                      1336  else if (d == (NET_C_DATA_IDX(0u) + 1))
                                                                                      @@ -1411,13 +1411,13 @@
                                                                                      1372 
                                                                                      1378 // -----------------------------------------------------------------------------
                                                                                      1380 template<typename Tnet = Network>
                                                                                      -
                                                                                      1381 inline void rules_zerodiag(NetRules<Tnet> * rules) {
                                                                                      +
                                                                                      1381 inline void rules_zerodiag(NetRules<Tnet> * rules) {
                                                                                      1382 
                                                                                      1383  NETWORK_RULE_LAMBDA(no_self_tie) {
                                                                                      -
                                                                                      1384  return i != j;
                                                                                      +
                                                                                      1384  return i != j;
                                                                                      1385  };
                                                                                      1386 
                                                                                      -
                                                                                      1387  rules->add_rule(
                                                                                      +
                                                                                      1387  rules->add_rule(
                                                                                      1388  no_self_tie, false,
                                                                                      1389  "No self-ties",
                                                                                      1390  "No self-ties"
                                                                                      @@ -1452,12 +1452,13 @@
                                                                                      Rule
                                                                                      Rule for determining if a cell should be included in a sequence.
                                                                                      Definition: rules-bones.hpp:20
                                                                                      Rules
                                                                                      Vector of objects of class Rule.
                                                                                      Definition: rules-bones.hpp:71
                                                                                      +
                                                                                      Rules::add_rule
                                                                                      void add_rule(Rule< Array_Type, Data_Type > rule)
                                                                                      Definition: rules-meat.hpp:72
                                                                                      StatsCounter
                                                                                      Count stats for a single Array.
                                                                                      Definition: statscounter-bones.hpp:14
                                                                                      Support
                                                                                      Compute the support of sufficient statistics.
                                                                                      Definition: support-bones.hpp:42
                                                                                      res
                                                                                      return res
                                                                                      Definition: counters-meat.hpp:265
                                                                                      return
                                                                                      return
                                                                                      Definition: counters-meat.hpp:175
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      counter_nodematch
                                                                                      void counter_nodematch(NetCounters< Tnet > *counters, size_t attr_id)
                                                                                      Definition: network.hpp:1091
                                                                                      counter_idegree
                                                                                      void counter_idegree(NetCounters< Tnet > *counters, std::vector< size_t > d)
                                                                                      Counts number of vertices with a given in-degree.
                                                                                      Definition: network.hpp:1123
                                                                                      counter_istar2
                                                                                      void counter_istar2(NetCounters< Tnet > *counters)
                                                                                      Definition: network.hpp:312
                                                                                      @@ -1477,8 +1478,6 @@
                                                                                      counter_nodeocov
                                                                                      void counter_nodeocov(NetCounters< Tnet > *counters, size_t attr_id)
                                                                                      Definition: network.hpp:1041
                                                                                      counter_odegree15
                                                                                      void counter_odegree15(NetCounters< Tnet > *counters)
                                                                                      Definition: network.hpp:834
                                                                                      counter_idegree15
                                                                                      void counter_idegree15(NetCounters< Tnet > *counters)
                                                                                      Definition: network.hpp:757
                                                                                      -
                                                                                      rules
                                                                                      Data_Rule_Type & rules
                                                                                      Definition: model-meat.hpp:371
                                                                                      -
                                                                                      k
                                                                                      size_t k
                                                                                      Definition: model-meat.hpp:1294
                                                                                      NETWORKDENSE_COUNTER_LAMBDA
                                                                                      #define NETWORKDENSE_COUNTER_LAMBDA(a)
                                                                                      Definition: network.hpp:123
                                                                                      BARRY_ZERO_NETWORK_DENSE
                                                                                      #define BARRY_ZERO_NETWORK_DENSE
                                                                                      Definition: network.hpp:86
                                                                                      @@ -1497,7 +1496,7 @@ diff --git a/powerset-bones_8hpp.html b/powerset-bones_8hpp.html index ecfe6f0af..c188be031 100644 --- a/powerset-bones_8hpp.html +++ b/powerset-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/powerset-bones_8hpp_source.html b/powerset-bones_8hpp_source.html index 38409f54b..d56c49abc 100644 --- a/powerset-bones_8hpp_source.html +++ b/powerset-bones_8hpp_source.html @@ -121,10 +121,10 @@
                                                                                      29  size_t n_locked;
                                                                                      30 
                                                                                      36  PowerSet() :
                                                                                      -
                                                                                      37  EmptyArray(), data(0u), rules(new Rules<Array_Type,Data_Rule_Type>()), N(0u), M(0u) {};
                                                                                      +
                                                                                      37  EmptyArray(), data(0u), rules(new Rules<Array_Type,Data_Rule_Type>()), N(0u), M(0u) {};
                                                                                      38  PowerSet(size_t N_, size_t M_) :
                                                                                      39  EmptyArray(N_, M_), data(0u),
                                                                                      -
                                                                                      40  rules(new Rules<Array_Type,Data_Rule_Type>()), N(N_), M(M_) {};
                                                                                      +
                                                                                      40  rules(new Rules<Array_Type,Data_Rule_Type>()), N(N_), M(M_) {};
                                                                                      41  PowerSet(const Array_Type & array);
                                                                                      42 
                                                                                      43  ~PowerSet();
                                                                                      @@ -136,7 +136,7 @@
                                                                                      56  void add_rule(Rule<Array_Type, Data_Rule_Type> rule);
                                                                                      57  void add_rule(
                                                                                      58  Rule_fun_type<Array_Type,Data_Rule_Type> count_fun_,
                                                                                      -
                                                                                      59  Data_Rule_Type data_
                                                                                      +
                                                                                      59  Data_Rule_Type data_
                                                                                      60  );
                                                                                      62 
                                                                                      63 
                                                                                      @@ -145,7 +145,7 @@
                                                                                      68  typename std::vector< Array_Type >::iterator begin() {return data.begin();};
                                                                                      69  typename std::vector< Array_Type >::iterator end() {return data.end();};
                                                                                      70  std::size_t size() const noexcept {return data.size();};
                                                                                      -
                                                                                      71  const Array_Type& operator[](const size_t & i) const {return data.at(i);};
                                                                                      +
                                                                                      71  const Array_Type& operator[](const size_t & i) const {return data.at(i);};
                                                                                      73 
                                                                                      74 };
                                                                                      75 
                                                                                      @@ -177,10 +177,9 @@
                                                                                      Rule
                                                                                      Rule for determining if a cell should be included in a sequence.
                                                                                      Definition: rules-bones.hpp:20
                                                                                      Rules
                                                                                      Vector of objects of class Rule.
                                                                                      Definition: rules-bones.hpp:71
                                                                                      count_fun_
                                                                                      Data_Type count_fun_
                                                                                      Definition: counters-meat.hpp:179
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      -
                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      noexcept
                                                                                      Data_Type &&counter_ noexcept
                                                                                      Definition: counters-meat.hpp:27
                                                                                      -
                                                                                      Data_Rule_Type
                                                                                      template Data_Rule_Type
                                                                                      Definition: model-meat.hpp:1406
                                                                                      +
                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
                                                                                      Rule_fun_type
                                                                                      std::function< bool(const Array_Type &, size_t, size_t, Data_Type &)> Rule_fun_type
                                                                                      Definition: typedefs.hpp:190
                                                                                      @@ -188,7 +187,7 @@ diff --git a/powerset-meat_8hpp.html b/powerset-meat_8hpp.html index 33bddadfc..0a0dbdbf1 100644 --- a/powerset-meat_8hpp.html +++ b/powerset-meat_8hpp.html @@ -113,7 +113,7 @@ diff --git a/powerset-meat_8hpp_source.html b/powerset-meat_8hpp_source.html index 53c1630ce..ee58e0dc5 100644 --- a/powerset-meat_8hpp_source.html +++ b/powerset-meat_8hpp_source.html @@ -103,14 +103,14 @@
                                                                                      5 inline PowerSet<Array_Type,Data_Rule_Type>::PowerSet(
                                                                                      6  const Array_Type & array
                                                                                      7 ) : EmptyArray(array), data(0u),
                                                                                      -
                                                                                      8  rules(new Rules<Array_Type,Data_Rule_Type>()), N(array.nrow()), M(array.ncol()) {
                                                                                      +
                                                                                      8  rules(new Rules<Array_Type,Data_Rule_Type>()), N(array.nrow()), M(array.ncol()) {
                                                                                      9 
                                                                                      10 }
                                                                                      11 
                                                                                      12 template <typename Array_Type, typename Data_Rule_Type>
                                                                                      13 inline PowerSet<Array_Type,Data_Rule_Type>::~PowerSet() {
                                                                                      14  if (!this->rules_deleted)
                                                                                      -
                                                                                      15  delete rules;
                                                                                      +
                                                                                      15  delete rules;
                                                                                      16 }
                                                                                      17 
                                                                                      18 template <typename Array_Type, typename Data_Rule_Type>
                                                                                      @@ -120,7 +120,7 @@
                                                                                      22  // Computing the locations
                                                                                      23  coordinates_free.clear();
                                                                                      24  coordinates_locked.clear();
                                                                                      -
                                                                                      25  rules->get_seq(EmptyArray, &coordinates_free, &coordinates_locked);
                                                                                      +
                                                                                      25  rules->get_seq(EmptyArray, &coordinates_free, &coordinates_locked);
                                                                                      26 
                                                                                      27  n_free = coordinates_free.size() / 2u;
                                                                                      28  n_locked = coordinates_locked.size() / 2u;
                                                                                      @@ -132,20 +132,20 @@
                                                                                      34  if (EmptyArray.is_dense())
                                                                                      35  {
                                                                                      36 
                                                                                      -
                                                                                      37  for (size_t i = 0u; i < n_free; ++i)
                                                                                      +
                                                                                      37  for (size_t i = 0u; i < n_free; ++i)
                                                                                      38  EmptyArray(
                                                                                      -
                                                                                      39  coordinates_free[i * 2u],
                                                                                      -
                                                                                      40  coordinates_free[i * 2u + 1u]
                                                                                      +
                                                                                      39  coordinates_free[i * 2u],
                                                                                      +
                                                                                      40  coordinates_free[i * 2u + 1u]
                                                                                      41  ) = 0;
                                                                                      42 
                                                                                      43  }
                                                                                      44  else
                                                                                      45  {
                                                                                      46 
                                                                                      -
                                                                                      47  for (size_t i = 0u; i < n_free; ++i)
                                                                                      +
                                                                                      47  for (size_t i = 0u; i < n_free; ++i)
                                                                                      48  EmptyArray.rm_cell(
                                                                                      -
                                                                                      49  coordinates_free[i * 2u],
                                                                                      -
                                                                                      50  coordinates_free[i * 2u + 1u],
                                                                                      +
                                                                                      49  coordinates_free[i * 2u],
                                                                                      +
                                                                                      50  coordinates_free[i * 2u + 1u],
                                                                                      51  false,
                                                                                      52  true
                                                                                      53  );
                                                                                      @@ -279,19 +279,19 @@
                                                                                      181  Rule<Array_Type, Data_Rule_Type> rule
                                                                                      182 ) {
                                                                                      183 
                                                                                      -
                                                                                      184  rules->add_rule(rule);
                                                                                      +
                                                                                      184  rules->add_rule(rule);
                                                                                      185  return;
                                                                                      186 }
                                                                                      187 
                                                                                      188 template <typename Array_Type, typename Data_Rule_Type>
                                                                                      189 inline void PowerSet<Array_Type,Data_Rule_Type>::add_rule(
                                                                                      -
                                                                                      190  Rule_fun_type<Array_Type,Data_Rule_Type> rule_fun_,
                                                                                      -
                                                                                      191  Data_Rule_Type data_
                                                                                      +
                                                                                      190  Rule_fun_type<Array_Type,Data_Rule_Type> rule_fun_,
                                                                                      +
                                                                                      191  Data_Rule_Type data_
                                                                                      192 ) {
                                                                                      193 
                                                                                      -
                                                                                      194  rules->add_rule(
                                                                                      -
                                                                                      195  rule_fun_,
                                                                                      -
                                                                                      196  data_
                                                                                      +
                                                                                      194  rules->add_rule(
                                                                                      +
                                                                                      195  rule_fun_,
                                                                                      +
                                                                                      196  data_
                                                                                      197  );
                                                                                      198 
                                                                                      199  return;
                                                                                      @@ -309,11 +309,8 @@
                                                                                      Rule
                                                                                      Rule for determining if a cell should be included in a sequence.
                                                                                      Definition: rules-bones.hpp:20
                                                                                      Rules
                                                                                      Vector of objects of class Rule.
                                                                                      Definition: rules-bones.hpp:71
                                                                                      data
                                                                                      Data_Type &&counter_ data(std::move(counter_.data))
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      -
                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
                                                                                      -
                                                                                      rules
                                                                                      Data_Rule_Type & rules
                                                                                      Definition: model-meat.hpp:371
                                                                                      -
                                                                                      Data_Rule_Type
                                                                                      template Data_Rule_Type
                                                                                      Definition: model-meat.hpp:1406
                                                                                      -
                                                                                      rule_fun_
                                                                                      Data_Rule_Dyn_Type rule_fun_
                                                                                      Definition: model-meat.hpp:404
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      +
                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
                                                                                      Rule_fun_type
                                                                                      std::function< bool(const Array_Type &, size_t, size_t, Data_Type &)> Rule_fun_type
                                                                                      Definition: typedefs.hpp:190

                                                                                      @@ -322,7 +319,7 @@ diff --git a/progress_8hpp.html b/progress_8hpp.html index 51f1fd170..b3b54ac7e 100644 --- a/progress_8hpp.html +++ b/progress_8hpp.html @@ -146,7 +146,7 @@

                                                                                      • include
                                                                                      • barry
                                                                                      • progress.hpp
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                      diff --git a/progress_8hpp_source.html b/progress_8hpp_source.html index 98e1ff9a2..99fe2314d 100644 --- a/progress_8hpp_source.html +++ b/progress_8hpp_source.html @@ -164,7 +164,7 @@ diff --git a/rules-bones_8hpp.html b/rules-bones_8hpp.html index 074dca1f9..769b99ba9 100644 --- a/rules-bones_8hpp.html +++ b/rules-bones_8hpp.html @@ -123,7 +123,7 @@

                                                                                      Functions

                                                                                      template<typename Array_Type , typename Data_Type > -bool rule_fun_default (const Array_Type *array, size_t i, size_t j, Data_Type *dat) +bool rule_fun_default (const Array_Type *array, size_t i, size_t j, Data_Type *dat)  

                                                                                      Function Documentation

                                                                                      @@ -177,7 +177,7 @@

                                                                                      • include
                                                                                      • barry
                                                                                      • rules-bones.hpp
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                      diff --git a/rules-bones_8hpp_source.html b/rules-bones_8hpp_source.html index 079d95e50..cc369ed1d 100644 --- a/rules-bones_8hpp_source.html +++ b/rules-bones_8hpp_source.html @@ -100,7 +100,7 @@
                                                                                      2 #define BARRY_RULES_BONES_HPP 1
                                                                                      3 
                                                                                      4 template <typename Array_Type, typename Data_Type>
                                                                                      -
                                                                                      5 bool rule_fun_default(const Array_Type * array, size_t i, size_t j, Data_Type * dat) {
                                                                                      +
                                                                                      5 bool rule_fun_default(const Array_Type * array, size_t i, size_t j, Data_Type * dat) {
                                                                                      6  return false;
                                                                                      7 }
                                                                                      8 
                                                                                      @@ -128,7 +128,7 @@
                                                                                      51 
                                                                                      52  Data_Type & D();
                                                                                      53 
                                                                                      -
                                                                                      54  bool operator()(const Array_Type & a, size_t i, size_t j);
                                                                                      +
                                                                                      54  bool operator()(const Array_Type & a, size_t i, size_t j);
                                                                                      55 
                                                                                      56  std::string & get_name();
                                                                                      57  std::string & get_description();
                                                                                      @@ -147,8 +147,8 @@
                                                                                      76 public:
                                                                                      77  Rules() {};
                                                                                      78 
                                                                                      -
                                                                                      79  Rules(const Rules<Array_Type,Data_Type> & rules_);
                                                                                      -
                                                                                      80  Rules<Array_Type,Data_Type> operator=(const Rules<Array_Type,Data_Type> & rules_);
                                                                                      +
                                                                                      79  Rules(const Rules<Array_Type,Data_Type> & rules_);
                                                                                      +
                                                                                      80  Rules<Array_Type,Data_Type> operator=(const Rules<Array_Type,Data_Type> & rules_);
                                                                                      81 
                                                                                      82  ~Rules() {};
                                                                                      83 
                                                                                      @@ -159,15 +159,15 @@
                                                                                      94  void add_rule(Rule<Array_Type, Data_Type> rule);
                                                                                      95  void add_rule(
                                                                                      96  Rule_fun_type<Array_Type,Data_Type> rule_,
                                                                                      -
                                                                                      97  Data_Type data_,
                                                                                      +
                                                                                      97  Data_Type data_,
                                                                                      98  std::string name_ = "",
                                                                                      99  std::string description_ = ""
                                                                                      100  );
                                                                                      102 
                                                                                      -
                                                                                      113  bool operator()(const Array_Type & a, size_t i, size_t j);
                                                                                      +
                                                                                      113  bool operator()(const Array_Type & a, size_t i, size_t j);
                                                                                      114 
                                                                                      124  void get_seq(
                                                                                      -
                                                                                      125  const Array_Type & a,
                                                                                      +
                                                                                      125  const Array_Type & a,
                                                                                      126  std::vector< size_t > * free,
                                                                                      127  std::vector< size_t > * locked = nullptr
                                                                                      128  );
                                                                                      @@ -213,13 +213,11 @@
                                                                                      data
                                                                                      Data_Type &&counter_ data(std::move(counter_.data))
                                                                                      fun_
                                                                                      Data_Type fun_
                                                                                      Definition: counters-meat.hpp:271
                                                                                      desc_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string std::string desc_
                                                                                      Definition: counters-meat.hpp:186
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      name_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string name_
                                                                                      Definition: counters-meat.hpp:183
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84
                                                                                      -
                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      noexcept
                                                                                      Data_Type &&counter_ noexcept
                                                                                      Definition: counters-meat.hpp:27
                                                                                      -
                                                                                      rules_
                                                                                      Data_Rule_Type * rules_
                                                                                      Definition: model-meat.hpp:380
                                                                                      -
                                                                                      a
                                                                                      size_t a
                                                                                      Definition: model-meat.hpp:1287
                                                                                      +
                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
                                                                                      rule_fun_default
                                                                                      bool rule_fun_default(const Array_Type *array, size_t i, size_t j, Data_Type *dat)
                                                                                      Definition: rules-bones.hpp:5
                                                                                      Rule_fun_type
                                                                                      std::function< bool(const Array_Type &, size_t, size_t, Data_Type &)> Rule_fun_type
                                                                                      Definition: typedefs.hpp:190
                                                                                      @@ -228,7 +226,7 @@ diff --git a/rules-meat_8hpp.html b/rules-meat_8hpp.html index 7ed1f4708..a26bb0018 100644 --- a/rules-meat_8hpp.html +++ b/rules-meat_8hpp.html @@ -113,7 +113,7 @@ diff --git a/rules-meat_8hpp_source.html b/rules-meat_8hpp_source.html index f903660ba..64276bc7a 100644 --- a/rules-meat_8hpp_source.html +++ b/rules-meat_8hpp_source.html @@ -101,13 +101,13 @@
                                                                                      3 
                                                                                      4 template <typename Array_Type, typename Data_Type>
                                                                                      5 inline Rules<Array_Type,Data_Type>::Rules(
                                                                                      -
                                                                                      6  const Rules<Array_Type,Data_Type> & rules_
                                                                                      +
                                                                                      6  const Rules<Array_Type,Data_Type> & rules_
                                                                                      7 ) {
                                                                                      8 
                                                                                      9  // Copy all rules, if a rule is tagged as
                                                                                      10  // to be deleted, then copy the value
                                                                                      -
                                                                                      11  for (auto i = 0u; i != rules_.size(); ++i)
                                                                                      -
                                                                                      12  this->add_rule(rules_.data[i]);
                                                                                      +
                                                                                      11  for (auto i = 0u; i != rules_.size(); ++i)
                                                                                      +
                                                                                      12  this->add_rule(rules_.data[i]);
                                                                                      13 
                                                                                      14  return;
                                                                                      15 
                                                                                      @@ -115,15 +115,15 @@
                                                                                      17 
                                                                                      18 template <typename Array_Type, typename Data_Type>
                                                                                      19 Rules<Array_Type,Data_Type> Rules<Array_Type,Data_Type>::operator=(
                                                                                      -
                                                                                      20  const Rules<Array_Type,Data_Type> & rules_
                                                                                      +
                                                                                      20  const Rules<Array_Type,Data_Type> & rules_
                                                                                      21 ) {
                                                                                      22 
                                                                                      -
                                                                                      23  if (this != &rules_) {
                                                                                      +
                                                                                      23  if (this != &rules_) {
                                                                                      24 
                                                                                      25  // Copy all rules, if a rule is tagged as
                                                                                      26  // to be deleted, then copy the value
                                                                                      -
                                                                                      27  for (auto i = 0u; i != rules_.size(); ++i)
                                                                                      -
                                                                                      28  this->add_rule(rules_.data[i]);
                                                                                      +
                                                                                      27  for (auto i = 0u; i != rules_.size(); ++i)
                                                                                      +
                                                                                      28  this->add_rule(rules_.data[i]);
                                                                                      29 
                                                                                      30  }
                                                                                      31 
                                                                                      @@ -138,8 +138,8 @@
                                                                                      40 }
                                                                                      41 
                                                                                      42 template<typename Array_Type, typename Data_Type>
                                                                                      -
                                                                                      43 inline bool Rule<Array_Type,Data_Type>::operator()(const Array_Type & a, size_t i, size_t j) {
                                                                                      -
                                                                                      44  return fun(a, i, j, dat);
                                                                                      +
                                                                                      43 inline bool Rule<Array_Type,Data_Type>::operator()(const Array_Type & a, size_t i, size_t j) {
                                                                                      +
                                                                                      44  return fun(a, i, j, dat);
                                                                                      45 }
                                                                                      46 
                                                                                      47 template<typename Array_Type, typename Data_Type>
                                                                                      @@ -179,14 +179,14 @@
                                                                                      81 template <typename Array_Type, typename Data_Type>
                                                                                      82 inline void Rules<Array_Type,Data_Type>::add_rule(
                                                                                      83  Rule_fun_type<Array_Type,Data_Type> rule_,
                                                                                      -
                                                                                      84  Data_Type data_,
                                                                                      +
                                                                                      84  Data_Type data_,
                                                                                      85  std::string name_,
                                                                                      86  std::string description_
                                                                                      87 ) {
                                                                                      88 
                                                                                      89  data.push_back(Rule<Array_Type,Data_Type>(
                                                                                      90  rule_,
                                                                                      -
                                                                                      91  data_,
                                                                                      +
                                                                                      91  data_,
                                                                                      92  name_,
                                                                                      93  description_
                                                                                      94  ));
                                                                                      @@ -197,14 +197,14 @@
                                                                                      99 
                                                                                      100 template <typename Array_Type, typename Data_Type>
                                                                                      101 inline bool Rules<Array_Type,Data_Type>::operator()(
                                                                                      -
                                                                                      102  const Array_Type & a, size_t i, size_t j
                                                                                      +
                                                                                      102  const Array_Type & a, size_t i, size_t j
                                                                                      103 ) {
                                                                                      104 
                                                                                      105  if (data.size()==0u)
                                                                                      106  return true;
                                                                                      107 
                                                                                      108  for (auto & f: data)
                                                                                      -
                                                                                      109  if (!f.operator()(a, i, j))
                                                                                      +
                                                                                      109  if (!f.operator()(a, i, j))
                                                                                      110  return false;
                                                                                      111 
                                                                                      112  return true;
                                                                                      @@ -213,33 +213,33 @@
                                                                                      115 
                                                                                      116 template <typename Array_Type, typename Data_Type>
                                                                                      117 inline void Rules<Array_Type,Data_Type>::get_seq(
                                                                                      -
                                                                                      118  const Array_Type & a,
                                                                                      +
                                                                                      118  const Array_Type & a,
                                                                                      119  std::vector< size_t > * free,
                                                                                      120  std::vector< size_t > * locked
                                                                                      121 ) {
                                                                                      122 
                                                                                      123 
                                                                                      -
                                                                                      124  size_t N = a.nrow();
                                                                                      -
                                                                                      125  size_t K = a.ncol();
                                                                                      +
                                                                                      124  size_t N = a.nrow();
                                                                                      +
                                                                                      125  size_t K = a.ncol();
                                                                                      126 
                                                                                      127  // Reserving some space
                                                                                      128  (void) free->empty();
                                                                                      129  (void) free->reserve(2u * N * K);
                                                                                      130 
                                                                                      -
                                                                                      131  for (size_t i = 0u; i < N; ++i)
                                                                                      +
                                                                                      131  for (size_t i = 0u; i < N; ++i)
                                                                                      132  {
                                                                                      133 
                                                                                      134  for (size_t j = 0u; j < K; ++j)
                                                                                      135  {
                                                                                      136 
                                                                                      137  // Locked cells are skipped
                                                                                      -
                                                                                      138  if (!this->operator()(a, i, j))
                                                                                      +
                                                                                      138  if (!this->operator()(a, i, j))
                                                                                      139  {
                                                                                      140 
                                                                                      141  if (locked != nullptr)
                                                                                      142  {
                                                                                      143 
                                                                                      -
                                                                                      144  locked->push_back(i);
                                                                                      +
                                                                                      144  locked->push_back(i);
                                                                                      145  locked->push_back(j);
                                                                                      146 
                                                                                      147  }
                                                                                      @@ -248,7 +248,7 @@
                                                                                      150 
                                                                                      151  }
                                                                                      152 
                                                                                      -
                                                                                      153  free->push_back(i);
                                                                                      +
                                                                                      153  free->push_back(i);
                                                                                      154  free->push_back(j);
                                                                                      155 
                                                                                      156  }
                                                                                      @@ -266,9 +266,9 @@
                                                                                      168 {
                                                                                      169 
                                                                                      170  std::vector< std::string > out;
                                                                                      -
                                                                                      171  out.reserve(this->size());
                                                                                      -
                                                                                      172  for (size_t i = 0u; i < out.size(); ++i)
                                                                                      -
                                                                                      173  out.push_back(this->data.at(i).get_name());
                                                                                      +
                                                                                      171  out.reserve(this->size());
                                                                                      +
                                                                                      172  for (size_t i = 0u; i < out.size(); ++i)
                                                                                      +
                                                                                      173  out.push_back(this->data.at(i).get_name());
                                                                                      174 
                                                                                      175  return out;
                                                                                      176 
                                                                                      @@ -279,9 +279,9 @@
                                                                                      181 {
                                                                                      182 
                                                                                      183  std::vector< std::string > out;
                                                                                      -
                                                                                      184  out.reserve(this->size());
                                                                                      -
                                                                                      185  for (size_t i = 0u; i < out.size(); ++i)
                                                                                      -
                                                                                      186  out.push_back(data.at(i).get_description());
                                                                                      +
                                                                                      184  out.reserve(this->size());
                                                                                      +
                                                                                      185  for (size_t i = 0u; i < out.size(); ++i)
                                                                                      +
                                                                                      186  out.push_back(data.at(i).get_description());
                                                                                      187 
                                                                                      188  return out;
                                                                                      189 
                                                                                      @@ -295,6 +295,7 @@
                                                                                      Rule::get_description
                                                                                      std::string & get_description()
                                                                                      Definition: rules-meat.hpp:54
                                                                                      Rule::get_name
                                                                                      std::string & get_name()
                                                                                      Definition: rules-meat.hpp:48
                                                                                      Rules
                                                                                      Vector of objects of class Rule.
                                                                                      Definition: rules-bones.hpp:71
                                                                                      +
                                                                                      Rules::size
                                                                                      size_t size() const noexcept
                                                                                      Definition: rules-bones.hpp:84
                                                                                      Rules::operator()
                                                                                      bool operator()(const Array_Type &a, size_t i, size_t j)
                                                                                      Check whether a given cell is free or locked.
                                                                                      Definition: rules-meat.hpp:101
                                                                                      Rules::add_rule
                                                                                      void add_rule(Rule< Array_Type, Data_Type > rule)
                                                                                      Definition: rules-meat.hpp:72
                                                                                      Rules::get_descriptions
                                                                                      std::vector< std::string > get_descriptions() const
                                                                                      Definition: rules-meat.hpp:180
                                                                                      @@ -306,13 +307,10 @@
                                                                                      name
                                                                                      Data_Type &&counter_ name(std::move(counter_.name))
                                                                                      fun
                                                                                      Data_Type fun
                                                                                      Definition: counters-meat.hpp:111
                                                                                      data
                                                                                      Data_Type &&counter_ data(std::move(counter_.data))
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      name_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type std::string name_
                                                                                      Definition: counters-meat.hpp:183
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84
                                                                                      -
                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
                                                                                      -
                                                                                      rules_
                                                                                      Data_Rule_Type * rules_
                                                                                      Definition: model-meat.hpp:380
                                                                                      -
                                                                                      a
                                                                                      size_t a
                                                                                      Definition: model-meat.hpp:1287
                                                                                      -
                                                                                      size
                                                                                      return arrays2support size() - 1u
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      +
                                                                                      data_
                                                                                      Data_Type Counter_fun_type< Array_Type, Data_Type > Hasher_fun_type< Array_Type, Data_Type > Data_Type data_
                                                                                      Definition: counters-meat.hpp:182
                                                                                      Rule_fun_type
                                                                                      std::function< bool(const Array_Type &, size_t, size_t, Data_Type &)> Rule_fun_type
                                                                                      Definition: typedefs.hpp:190
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                                                                                      68  void reset_array(const Array_Type * Array_);
                                                                                      69 
                                                                                      70  void add_counter(Counter<Array_Type,Data_Type> f_);
                                                                                      -
                                                                                      71  void set_counters(Counters<Array_Type,Data_Type> * counters_);
                                                                                      +
                                                                                      71  void set_counters(Counters<Array_Type,Data_Type> * counters_);
                                                                                      72 
                                                                                      -
                                                                                      78  void count_init(size_t i, size_t j);
                                                                                      -
                                                                                      79  void count_current(size_t i, size_t j);
                                                                                      +
                                                                                      78  void count_init(size_t i, size_t j);
                                                                                      +
                                                                                      79  void count_current(size_t i, size_t j);
                                                                                      80  std::vector< double > count_all();
                                                                                      81 
                                                                                      82  Counters<Array_Type,Data_Type> * get_counters();
                                                                                      @@ -175,10 +175,10 @@
                                                                                      StatsCounter::add_counter
                                                                                      void add_counter(Counter< Array_Type, Data_Type > f_)
                                                                                      StatsCounter::get_counters
                                                                                      Counters< Array_Type, Data_Type > * get_counters()
                                                                                      StatsCounter::StatsCounter
                                                                                      StatsCounter(const StatsCounter< Array_Type, Data_Type > &counter)
                                                                                      Copy constructor.
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84
                                                                                      counter
                                                                                      Data_Type counter
                                                                                      Definition: counters-meat.hpp:171
                                                                                      -
                                                                                      counters_
                                                                                      Data_Counter_Type * counters_
                                                                                      Definition: model-meat.hpp:344
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      +
                                                                                      counters_
                                                                                      Data_Type * counters_
                                                                                      Definition: statscounter-meat.hpp:54
                                                                                      f_
                                                                                      Data_Type f_
                                                                                      Definition: statscounter-meat.hpp:45
                                                                                      @@ -188,7 +188,7 @@ diff --git a/statscounter-meat_8hpp.html b/statscounter-meat_8hpp.html index d49d7727d..c9c6902f6 100644 --- a/statscounter-meat_8hpp.html +++ b/statscounter-meat_8hpp.html @@ -118,7 +118,7 @@   #define STATSCOUNTER_TEMPLATE_ARGS()   <typename Array_Type, typename Data_Type>   -#define STATSCOUNTER_TEMPLATE(a, b)    template STATSCOUNTER_TEMPLATE_ARGS() inline a STATSCOUNTER_TYPE()::b +#define STATSCOUNTER_TEMPLATE(a, b)    template STATSCOUNTER_TEMPLATE_ARGS() inline a STATSCOUNTER_TYPE()::b   - + - + - + - + - + @@ -180,7 +180,7 @@

                                                                                      #define STATSCOUNTER_TEMPLATE

                                                                                      - + @@ -191,7 +191,7 @@

                                                                                      STATSCOUNTER_TEMPLATE_ARGS() inline a STATSCOUNTER_TYPE()::b +

                                                                                      @@ -133,15 +133,15 @@

                                                                                       
                                                                                       STATSCOUNTER_TEMPLATE (void, add_counter)(Counter< Array_Type
                                                                                       
                                                                                       STATSCOUNTER_TEMPLATE (void, set_counters)(Counters< Array_Type
                                                                                       STATSCOUNTER_TEMPLATE (void, set_counters)(Counters< Array_Type
                                                                                       
                                                                                       STATSCOUNTER_TEMPLATE (void, count_init)(size_t i
                                                                                       STATSCOUNTER_TEMPLATE (void, count_init)(size_t i
                                                                                       
                                                                                      current_stats resize (counters->size(), 0.0)
                                                                                      current_stats resize (counters->size(), 0.0)
                                                                                       
                                                                                       for (size_t n=0u;n< counters->size();++n) current_stats[n]
                                                                                       for (size_t n=0u;n< counters->size();++n) current_stats[n]
                                                                                       
                                                                                       STATSCOUNTER_TEMPLATE (void, count_current)(size_t i
                                                                                       STATSCOUNTER_TEMPLATE (void, count_current)(size_t i
                                                                                       
                                                                                       STATSCOUNTER_TEMPLATE (std::vector< std::string >, get_names)() const
                                                                                       
                                                                                      (  a, a,
                                                                                          template STATSCOUNTER_TEMPLATE_ARGS() inline a STATSCOUNTER_TYPE()::b
                                                                                      @@ -266,7 +266,7 @@

                                                                                      for ( size_t  - n = 0u;n< counters->size();++n) + n = 0u;n< counters->size();++n) @@ -529,7 +529,7 @@

                                                                                      - set_counters  + set_counters    @@ -713,7 +713,7 @@

                                                                                      • include
                                                                                      • barry
                                                                                      • statscounter-meat.hpp
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1

                                                                                      diff --git a/statscounter-meat_8hpp_source.html b/statscounter-meat_8hpp_source.html index 8ac113cd6..d50cb1197 100644 --- a/statscounter-meat_8hpp_source.html +++ b/statscounter-meat_8hpp_source.html @@ -148,7 +148,7 @@
                                                                                      50 
                                                                                      51 }
                                                                                      52 
                                                                                      -
                                                                                      53 STATSCOUNTER_TEMPLATE(void, set_counters)(Counters<Array_Type,Data_Type> * counters_)
                                                                                      +
                                                                                      53 STATSCOUNTER_TEMPLATE(void, set_counters)(Counters<Array_Type,Data_Type> * counters_)
                                                                                      54 {
                                                                                      55 
                                                                                      56  // Cleaning up before replacing the memory
                                                                                      @@ -161,7 +161,7 @@
                                                                                      63 
                                                                                      64 }
                                                                                      65 
                                                                                      -
                                                                                      66 STATSCOUNTER_TEMPLATE(void, count_init)(size_t i,size_t j)
                                                                                      +
                                                                                      66 STATSCOUNTER_TEMPLATE(void, count_init)(size_t i,size_t j)
                                                                                      67 {
                                                                                      68 
                                                                                      69  // Do we have any counter?
                                                                                      @@ -173,12 +173,12 @@
                                                                                      75  current_stats.resize(counters->size(), 0.0);
                                                                                      76  // change_stats.resize(counters->size(), 0.0);
                                                                                      77  for (size_t n = 0u; n < counters->size(); ++n)
                                                                                      -
                                                                                      78  current_stats[n] = counters->operator[](n).init(EmptyArray, i, j);
                                                                                      +
                                                                                      78  current_stats[n] = counters->operator[](n).init(EmptyArray, i, j);
                                                                                      79 
                                                                                      80  return;
                                                                                      81 }
                                                                                      82 
                                                                                      -
                                                                                      83 STATSCOUNTER_TEMPLATE(void, count_current)(size_t i, size_t j)
                                                                                      +
                                                                                      83 STATSCOUNTER_TEMPLATE(void, count_current)(size_t i, size_t j)
                                                                                      84 {
                                                                                      85 
                                                                                      86  // Iterating through the functions, and updating the set of
                                                                                      @@ -186,7 +186,7 @@
                                                                                      88  for (size_t n = 0u; n < counters->size(); ++n) {
                                                                                      89  // change_stats[n] = counters->operator[](n).count(EmptyArray, i, j);
                                                                                      90  // current_stats[n] += change_stats[n];
                                                                                      -
                                                                                      91  current_stats[n] += counters->operator[](n).count(EmptyArray, i, j);
                                                                                      +
                                                                                      91  current_stats[n] += counters->operator[](n).count(EmptyArray, i, j);
                                                                                      92  }
                                                                                      93 
                                                                                      94  return;
                                                                                      @@ -226,10 +226,10 @@
                                                                                      128  #endif
                                                                                      129 
                                                                                      130  // Start iterating through the data
                                                                                      -
                                                                                      131  for (size_t i = 0; i < Array->nrow(); ++i)
                                                                                      +
                                                                                      131  for (size_t i = 0; i < Array->nrow(); ++i)
                                                                                      132  {
                                                                                      133 
                                                                                      -
                                                                                      134  const auto & row = Array->row(i, false);
                                                                                      +
                                                                                      134  const auto & row = Array->row(i, false);
                                                                                      135 
                                                                                      136  // Any element?
                                                                                      137  if (row.size() == 0u)
                                                                                      @@ -244,14 +244,14 @@
                                                                                      146  continue;
                                                                                      147 
                                                                                      148  // Adding a cell
                                                                                      -
                                                                                      149  EmptyArray.insert_cell(i, col.first, col.second, false, false);
                                                                                      +
                                                                                      149  EmptyArray.insert_cell(i, col.first, col.second, false, false);
                                                                                      150 
                                                                                      151  #ifdef BARRY_DEBUG_LEVEL
                                                                                      152  #if (BARRY_DEBUG_LEVEL >= 1)
                                                                                      153  BARRY_DEBUG_MSG("================================================================================")
                                                                                      154  BARRY_DEBUG_MSG("Debugging Stats counter: current_stats (before)")
                                                                                      155  std::string tmpmgs = "Inserting cell (" +
                                                                                      -
                                                                                      156  std::to_string(i) + ", " + std::to_string(col.first) + ")";
                                                                                      +
                                                                                      156  std::to_string(i) + ", " + std::to_string(col.first) + ")";
                                                                                      157  BARRY_DEBUG_MSG(tmpmgs.c_str());
                                                                                      158  BARRY_DEBUG_VEC_PRINT(current_stats);
                                                                                      159  #if (BARRY_DEBUG_LEVEL >= 2)
                                                                                      @@ -262,7 +262,7 @@
                                                                                      164  #endif
                                                                                      165 
                                                                                      166  // Computing the change statistics
                                                                                      -
                                                                                      167  count_current(i, col.first);
                                                                                      +
                                                                                      167  count_current(i, col.first);
                                                                                      168  #ifdef BARRY_DEBUG_LEVEL
                                                                                      169  #if (BARRY_DEBUG_LEVEL >= 1)
                                                                                      170  BARRY_DEBUG_MSG("Debugging Stats counter: current_stats (after)")
                                                                                      @@ -297,24 +297,24 @@
                                                                                      199  #endif
                                                                                      200 
                                                                                      201  // Start iterating through the data
                                                                                      -
                                                                                      202  for (size_t i = 0u; i < Array->nrow(); ++i)
                                                                                      +
                                                                                      202  for (size_t i = 0u; i < Array->nrow(); ++i)
                                                                                      203  {
                                                                                      204 
                                                                                      205  for (size_t j = 0u; j < Array->ncol(); ++j)
                                                                                      206  {
                                                                                      207  // We only insert if it is different from zero
                                                                                      -
                                                                                      208  if (Array->is_empty(i,j))
                                                                                      +
                                                                                      208  if (Array->is_empty(i,j))
                                                                                      209  continue;
                                                                                      210 
                                                                                      211  // Adding a cell
                                                                                      -
                                                                                      212  EmptyArray.insert_cell(i, j, 1, false, false);
                                                                                      +
                                                                                      212  EmptyArray.insert_cell(i, j, 1, false, false);
                                                                                      213 
                                                                                      214  #ifdef BARRY_DEBUG_LEVEL
                                                                                      215  #if (BARRY_DEBUG_LEVEL >= 1)
                                                                                      216  BARRY_DEBUG_MSG("================================================================================")
                                                                                      217  BARRY_DEBUG_MSG("Debugging Stats counter: current_stats (before)")
                                                                                      218  std::string tmpmgs = "Inserting cell (" +
                                                                                      -
                                                                                      219  std::to_string(i) + ", " + std::to_string(col.first) + ")";
                                                                                      +
                                                                                      219  std::to_string(i) + ", " + std::to_string(col.first) + ")";
                                                                                      220  BARRY_DEBUG_MSG(tmpmgs.c_str());
                                                                                      221  BARRY_DEBUG_VEC_PRINT(current_stats);
                                                                                      222  #if (BARRY_DEBUG_LEVEL >= 2)
                                                                                      @@ -325,7 +325,7 @@
                                                                                      227  #endif
                                                                                      228 
                                                                                      229  // Computing the change statistics
                                                                                      -
                                                                                      230  count_current(i, j);
                                                                                      +
                                                                                      230  count_current(i, j);
                                                                                      231  #ifdef BARRY_DEBUG_LEVEL
                                                                                      232  #if (BARRY_DEBUG_LEVEL >= 1)
                                                                                      233  BARRY_DEBUG_MSG("Debugging Stats counter: current_stats (after)")
                                                                                      @@ -366,8 +366,7 @@
                                                                                      StatsCounter
                                                                                      Count stats for a single Array.
                                                                                      Definition: statscounter-bones.hpp:14
                                                                                      StatsCounter::count_all
                                                                                      std::vector< double > count_all()
                                                                                      Definition: statscounter-meat.hpp:99
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      -
                                                                                      set_counters
                                                                                      support_fun set_counters(counters)
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      counters_
                                                                                      Data_Type * counters_
                                                                                      Definition: statscounter-meat.hpp:54
                                                                                      STATSCOUNTER_TEMPLATE
                                                                                      #define STATSCOUNTER_TEMPLATE(a, b)
                                                                                      Definition: statscounter-meat.hpp:8
                                                                                      counter_deleted
                                                                                      counter_deleted
                                                                                      Definition: statscounter-meat.hpp:23
                                                                                      @@ -385,7 +384,7 @@ diff --git a/structvec_hasher-members.html b/structvec_hasher-members.html index e9fc03e60..1f62626e3 100644 --- a/structvec_hasher-members.html +++ b/structvec_hasher-members.html @@ -105,7 +105,7 @@ diff --git a/structvec_hasher.html b/structvec_hasher.html index d56a55b84..a20798e6b 100644 --- a/structvec_hasher.html +++ b/structvec_hasher.html @@ -153,7 +153,7 @@

                                                                                      • vecHasher
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                      diff --git a/support-bones_8hpp.html b/support-bones_8hpp.html index dbf38806d..4b2f7c692 100644 --- a/support-bones_8hpp.html +++ b/support-bones_8hpp.html @@ -122,7 +122,7 @@ diff --git a/support-bones_8hpp_source.html b/support-bones_8hpp_source.html index fd0dc6e9e..1c901a3d5 100644 --- a/support-bones_8hpp_source.html +++ b/support-bones_8hpp_source.html @@ -116,8 +116,8 @@
                                                                                      18 
                                                                                      36 template <
                                                                                      37  typename Array_Type = BArray<bool, bool>,
                                                                                      -
                                                                                      38  typename Data_Counter_Type = bool,
                                                                                      -
                                                                                      39  typename Data_Rule_Type = bool,
                                                                                      +
                                                                                      38  typename Data_Counter_Type = bool,
                                                                                      +
                                                                                      39  typename Data_Rule_Type = bool,
                                                                                      40  typename Data_Rule_Dyn_Type = bool
                                                                                      41  >
                                                                                      42 class Support {
                                                                                      @@ -164,23 +164,23 @@
                                                                                      86 
                                                                                      89  Support(const Array_Type & Array_) :
                                                                                      90  EmptyArray(Array_),
                                                                                      -
                                                                                      91  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                      -
                                                                                      92  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                      -
                                                                                      93  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                      +
                                                                                      91  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                      +
                                                                                      92  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                      +
                                                                                      93  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                      94  N(Array_.nrow()), M(Array_.ncol()), current_stats() {};
                                                                                      95 
                                                                                      98  Support(size_t N_, size_t M_) :
                                                                                      99  EmptyArray(N_, M_),
                                                                                      -
                                                                                      100  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                      -
                                                                                      101  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                      -
                                                                                      102  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                      +
                                                                                      100  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                      +
                                                                                      101  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                      +
                                                                                      102  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                      103  N(N_), M(M_), current_stats() {};
                                                                                      104 
                                                                                      105  Support() :
                                                                                      106  EmptyArray(0u, 0u),
                                                                                      -
                                                                                      107  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                      -
                                                                                      108  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                      -
                                                                                      109  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                      +
                                                                                      107  counters(new Counters<Array_Type,Data_Counter_Type>()),
                                                                                      +
                                                                                      108  rules(new Rules<Array_Type,Data_Rule_Type>()),
                                                                                      +
                                                                                      109  rules_dyn(new Rules<Array_Type,Data_Rule_Dyn_Type>()),
                                                                                      110  N(0u), M(0u), current_stats() {};
                                                                                      111 
                                                                                      112  ~Support() {
                                                                                      @@ -188,9 +188,9 @@
                                                                                      114  if (delete_counters)
                                                                                      115  delete counters;
                                                                                      116  if (delete_rules)
                                                                                      -
                                                                                      117  delete rules;
                                                                                      +
                                                                                      117  delete rules;
                                                                                      118  if (delete_rules_dyn)
                                                                                      -
                                                                                      119  delete rules_dyn;
                                                                                      +
                                                                                      119  delete rules_dyn;
                                                                                      120 
                                                                                      121  };
                                                                                      122 
                                                                                      @@ -203,15 +203,15 @@
                                                                                      137  void reset_array(const Array_Type & Array_);
                                                                                      139 
                                                                                      147  void add_counter(Counter<Array_Type,Data_Counter_Type> f_);
                                                                                      -
                                                                                      148  void set_counters(Counters<Array_Type,Data_Counter_Type> * counters_);
                                                                                      +
                                                                                      148  void set_counters(Counters<Array_Type,Data_Counter_Type> * counters_);
                                                                                      150 
                                                                                      157  void add_rule(Rule<Array_Type, Data_Rule_Type> * f_);
                                                                                      158  void add_rule(Rule<Array_Type,Data_Rule_Type> f_);
                                                                                      -
                                                                                      159  void set_rules(Rules<Array_Type,Data_Rule_Type> * rules_);
                                                                                      +
                                                                                      159  void set_rules(Rules<Array_Type,Data_Rule_Type> * rules_);
                                                                                      160  void add_rule_dyn(Rule<Array_Type, Data_Rule_Dyn_Type> * f_);
                                                                                      161  void add_rule_dyn(Rule<Array_Type,Data_Rule_Dyn_Type> f_);
                                                                                      -
                                                                                      162  void set_rules_dyn(Rules<Array_Type,Data_Rule_Dyn_Type> * rules_);
                                                                                      -
                                                                                      163  bool eval_rules_dyn(const std::vector<double> & counts, const size_t & i, const size_t & j);
                                                                                      +
                                                                                      162  void set_rules_dyn(Rules<Array_Type,Data_Rule_Dyn_Type> * rules_);
                                                                                      +
                                                                                      163  bool eval_rules_dyn(const std::vector<double> & counts, const size_t & i, const size_t & j);
                                                                                      164  // bool eval_rules_dyn(const double * counts, const size_t & i, const size_t & j);
                                                                                      166 
                                                                                      180  void calc(
                                                                                      @@ -277,14 +277,9 @@
                                                                                      Support::set_rules
                                                                                      void set_rules(Rules< Array_Type, Data_Rule_Type > *rules_)
                                                                                      Definition: support-meat.hpp:463
                                                                                      Support::set_counters
                                                                                      void set_counters(Counters< Array_Type, Data_Counter_Type > *counters_)
                                                                                      Definition: support-meat.hpp:426
                                                                                      Support::get_current_stats
                                                                                      std::vector< double > * get_current_stats()
                                                                                      List current statistics.
                                                                                      Definition: support-meat.hpp:571
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84
                                                                                      -
                                                                                      rules_
                                                                                      Data_Rule_Type * rules_
                                                                                      Definition: model-meat.hpp:380
                                                                                      -
                                                                                      Data_Counter_Type
                                                                                      template Data_Counter_Type
                                                                                      Definition: model-meat.hpp:1406
                                                                                      -
                                                                                      rules
                                                                                      Data_Rule_Type & rules
                                                                                      Definition: model-meat.hpp:371
                                                                                      -
                                                                                      counters_
                                                                                      Data_Counter_Type * counters_
                                                                                      Definition: model-meat.hpp:344
                                                                                      -
                                                                                      rules_dyn
                                                                                      this rules_dyn
                                                                                      Definition: model-meat.hpp:424
                                                                                      -
                                                                                      Data_Rule_Type
                                                                                      template Data_Rule_Type
                                                                                      Definition: model-meat.hpp:1406
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      +
                                                                                      counters_
                                                                                      Data_Type * counters_
                                                                                      Definition: statscounter-meat.hpp:54
                                                                                      f_
                                                                                      Data_Type f_
                                                                                      Definition: statscounter-meat.hpp:45
                                                                                      @@ -294,7 +289,7 @@ diff --git a/support-meat_8hpp.html b/support-meat_8hpp.html index 591a315dc..f9fd4fa05 100644 --- a/support-meat_8hpp.html +++ b/support-meat_8hpp.html @@ -138,7 +138,7 @@

                                                                                      • include
                                                                                      • barry
                                                                                      • support-meat.hpp
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                      diff --git a/support-meat_8hpp_source.html b/support-meat_8hpp_source.html index 47ef073bd..091d34f26 100644 --- a/support-meat_8hpp_source.html +++ b/support-meat_8hpp_source.html @@ -111,7 +111,7 @@
                                                                                      13  // Computing the locations
                                                                                      14  coordinates_free.clear();
                                                                                      15  coordinates_locked.clear();
                                                                                      -
                                                                                      16  rules->get_seq(EmptyArray, &coordinates_free, &coordinates_locked);
                                                                                      +
                                                                                      16  rules->get_seq(EmptyArray, &coordinates_free, &coordinates_locked);
                                                                                      17 
                                                                                      18  coordiantes_n_free = coordinates_free.size() / 2u;
                                                                                      19  coordiantes_n_locked = coordinates_locked.size() / 2u;
                                                                                      @@ -124,10 +124,10 @@
                                                                                      26  if (EmptyArray.nnozero() > 0u)
                                                                                      27  {
                                                                                      28 
                                                                                      -
                                                                                      29  for (size_t i = 0u; i < coordiantes_n_free; ++i)
                                                                                      +
                                                                                      29  for (size_t i = 0u; i < coordiantes_n_free; ++i)
                                                                                      30  EmptyArray.rm_cell(
                                                                                      -
                                                                                      31  coordinates_free[i * 2u],
                                                                                      -
                                                                                      32  coordinates_free[i * 2u + 1u],
                                                                                      +
                                                                                      31  coordinates_free[i * 2u],
                                                                                      +
                                                                                      32  coordinates_free[i * 2u + 1u],
                                                                                      33  false, true
                                                                                      34  );
                                                                                      35 
                                                                                      @@ -135,16 +135,16 @@
                                                                                      37 
                                                                                      38  // Looked coordinates should still be removed if these are
                                                                                      39  // equivalent to zero
                                                                                      -
                                                                                      40  for (size_t i = 0u; i < coordiantes_n_locked; ++i)
                                                                                      +
                                                                                      40  for (size_t i = 0u; i < coordiantes_n_locked; ++i)
                                                                                      41  {
                                                                                      42 
                                                                                      43  if (static_cast<int>(EmptyArray(
                                                                                      -
                                                                                      44  coordinates_locked[i * 2u], coordinates_locked[i * 2u + 1u]
                                                                                      +
                                                                                      44  coordinates_locked[i * 2u], coordinates_locked[i * 2u + 1u]
                                                                                      45  )) == 0)
                                                                                      46 
                                                                                      47  EmptyArray.rm_cell(
                                                                                      -
                                                                                      48  coordinates_locked[i * 2u],
                                                                                      -
                                                                                      49  coordinates_locked[i * 2u + 1u],
                                                                                      +
                                                                                      48  coordinates_locked[i * 2u],
                                                                                      +
                                                                                      49  coordinates_locked[i * 2u + 1u],
                                                                                      50  false, true
                                                                                      51  );
                                                                                      52 
                                                                                      @@ -189,7 +189,7 @@
                                                                                      91  );
                                                                                      92 
                                                                                      93  // Adding to the overall count
                                                                                      -
                                                                                      94  bool include_it = rules_dyn->operator()(EmptyArray, 0u, 0u);
                                                                                      +
                                                                                      94  bool include_it = rules_dyn->operator()(EmptyArray, 0u, 0u);
                                                                                      95  if (include_it)
                                                                                      96  data.add(current_stats, nullptr);
                                                                                      97 
                                                                                      @@ -288,10 +288,10 @@
                                                                                      190 
                                                                                      191  // Adding to the overall count
                                                                                      192  BARRY_CHECK_SUPPORT(data, max_num_elements)
                                                                                      -
                                                                                      193  if (rules_dyn->size() > 0u)
                                                                                      +
                                                                                      193  if (rules_dyn->size() > 0u)
                                                                                      194  {
                                                                                      195 
                                                                                      -
                                                                                      196  if (rules_dyn->operator()(
                                                                                      +
                                                                                      196  if (rules_dyn->operator()(
                                                                                      197  EmptyArray,
                                                                                      198  coord_i,
                                                                                      199  coord_j
                                                                                      @@ -342,7 +342,7 @@
                                                                                      244 
                                                                                      245  if (change_stats_different > 0u)
                                                                                      246  {
                                                                                      -
                                                                                      247  #ifdef __OPENMP
                                                                                      +
                                                                                      247  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      248  #pragma omp simd
                                                                                      249  #endif
                                                                                      250  for (size_t n = 0u; n < n_counters; ++n)
                                                                                      @@ -417,10 +417,10 @@
                                                                                      319 
                                                                                      320  // Adding to the overall count
                                                                                      321  BARRY_CHECK_SUPPORT(data, max_num_elements)
                                                                                      -
                                                                                      322  if (rules_dyn->size() > 0u)
                                                                                      +
                                                                                      322  if (rules_dyn->size() > 0u)
                                                                                      323  {
                                                                                      324 
                                                                                      -
                                                                                      325  if (rules_dyn->operator()(EmptyArray, coord_i, coord_j))
                                                                                      +
                                                                                      325  if (rules_dyn->operator()(EmptyArray, coord_i, coord_j))
                                                                                      326  {
                                                                                      327 
                                                                                      328  if (change_stats_different > 0u)
                                                                                      @@ -465,7 +465,7 @@
                                                                                      367 
                                                                                      368  if (change_stats_different > 0u)
                                                                                      369  {
                                                                                      -
                                                                                      370  #ifdef __OPENMP
                                                                                      +
                                                                                      370  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      371  #pragma omp simd
                                                                                      372  #endif
                                                                                      373  for (size_t n = 0u; n < n_counters; ++n)
                                                                                      @@ -522,14 +522,14 @@
                                                                                      424 
                                                                                      425 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      426 inline void Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::set_counters(
                                                                                      -
                                                                                      427  Counters<Array_Type,Data_Counter_Type> * counters_
                                                                                      +
                                                                                      427  Counters<Array_Type,Data_Counter_Type> * counters_
                                                                                      428 ) {
                                                                                      429 
                                                                                      430  // Cleaning up before replacing the memory
                                                                                      431  if (delete_counters)
                                                                                      432  delete counters;
                                                                                      433  delete_counters = false;
                                                                                      -
                                                                                      434  counters = counters_;
                                                                                      +
                                                                                      434  counters = counters_;
                                                                                      435 
                                                                                      436  return;
                                                                                      437 
                                                                                      @@ -541,7 +541,7 @@
                                                                                      444  Rule<Array_Type, Data_Rule_Type> * f_
                                                                                      445 ) {
                                                                                      446 
                                                                                      -
                                                                                      447  rules->add_rule(f_);
                                                                                      +
                                                                                      447  rules->add_rule(f_);
                                                                                      448  return;
                                                                                      449 
                                                                                      450 }
                                                                                      @@ -551,21 +551,21 @@
                                                                                      454  Rule<Array_Type,Data_Rule_Type> f_
                                                                                      455 ) {
                                                                                      456 
                                                                                      -
                                                                                      457  rules->add_rule(f_);
                                                                                      +
                                                                                      457  rules->add_rule(f_);
                                                                                      458  return;
                                                                                      459 
                                                                                      460 }
                                                                                      461 
                                                                                      462 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      463 inline void Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::set_rules(
                                                                                      -
                                                                                      464  Rules<Array_Type,Data_Rule_Type> * rules_
                                                                                      +
                                                                                      464  Rules<Array_Type,Data_Rule_Type> * rules_
                                                                                      465 ) {
                                                                                      466 
                                                                                      467  // Cleaning up before replacing the memory
                                                                                      -
                                                                                      468  if (delete_rules)
                                                                                      -
                                                                                      469  delete rules;
                                                                                      -
                                                                                      470  delete_rules = false;
                                                                                      -
                                                                                      471  rules = rules_;
                                                                                      +
                                                                                      468  if (delete_rules)
                                                                                      +
                                                                                      469  delete rules;
                                                                                      +
                                                                                      470  delete_rules = false;
                                                                                      +
                                                                                      471  rules = rules_;
                                                                                      472 
                                                                                      473  return;
                                                                                      474 
                                                                                      @@ -576,7 +576,7 @@
                                                                                      479  Rule<Array_Type, Data_Rule_Dyn_Type> * f_
                                                                                      480 ) {
                                                                                      481 
                                                                                      -
                                                                                      482  rules_dyn->add_rule(f_);
                                                                                      +
                                                                                      482  rules_dyn->add_rule(f_);
                                                                                      483  return;
                                                                                      484 
                                                                                      485 }
                                                                                      @@ -586,21 +586,21 @@
                                                                                      489  Rule<Array_Type,Data_Rule_Dyn_Type> f_
                                                                                      490 ) {
                                                                                      491 
                                                                                      -
                                                                                      492  rules_dyn->add_rule(f_);
                                                                                      +
                                                                                      492  rules_dyn->add_rule(f_);
                                                                                      493  return;
                                                                                      494 
                                                                                      495 }
                                                                                      496 
                                                                                      497 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      498 inline void Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::set_rules_dyn(
                                                                                      -
                                                                                      499  Rules<Array_Type,Data_Rule_Dyn_Type> * rules_
                                                                                      +
                                                                                      499  Rules<Array_Type,Data_Rule_Dyn_Type> * rules_
                                                                                      500 ) {
                                                                                      501 
                                                                                      502  // Cleaning up before replacing the memory
                                                                                      -
                                                                                      503  if (delete_rules_dyn)
                                                                                      -
                                                                                      504  delete rules_dyn;
                                                                                      -
                                                                                      505  delete_rules_dyn = false;
                                                                                      -
                                                                                      506  rules_dyn = rules_;
                                                                                      +
                                                                                      503  if (delete_rules_dyn)
                                                                                      +
                                                                                      504  delete rules_dyn;
                                                                                      +
                                                                                      505  delete_rules_dyn = false;
                                                                                      +
                                                                                      506  rules_dyn = rules_;
                                                                                      507 
                                                                                      508  return;
                                                                                      509 
                                                                                      @@ -609,18 +609,18 @@
                                                                                      512 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      513 inline bool Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::eval_rules_dyn(
                                                                                      514  const std::vector< double > & counts,
                                                                                      -
                                                                                      515  const size_t & i,
                                                                                      +
                                                                                      515  const size_t & i,
                                                                                      516  const size_t & j
                                                                                      517 ) {
                                                                                      518 
                                                                                      -
                                                                                      519  if (rules_dyn->size() == 0u)
                                                                                      +
                                                                                      519  if (rules_dyn->size() == 0u)
                                                                                      520  return true;
                                                                                      521 
                                                                                      522  // Swapping pointers for a while
                                                                                      523  std::vector< double > tmpstats = current_stats;
                                                                                      524  current_stats = counts;
                                                                                      525 
                                                                                      -
                                                                                      526  bool rule_res = rules_dyn->operator()(EmptyArray, i, j);
                                                                                      +
                                                                                      526  bool rule_res = rules_dyn->operator()(EmptyArray, i, j);
                                                                                      527  current_stats = tmpstats;
                                                                                      528 
                                                                                      529  return rule_res;
                                                                                      @@ -673,8 +673,8 @@
                                                                                      577 
                                                                                      578  // Starting from the name of the stats
                                                                                      579  printf_barry("Position of variables:\n");
                                                                                      -
                                                                                      580  for (size_t i = 0u; i < n_counters; ++i) {
                                                                                      -
                                                                                      581  printf_barry("[% 2li] %s\n", i, counters->operator[](i).name.c_str());
                                                                                      +
                                                                                      580  for (size_t i = 0u; i < n_counters; ++i) {
                                                                                      +
                                                                                      581  printf_barry("[% 2li] %s\n", i, counters->operator[](i).name.c_str());
                                                                                      582  }
                                                                                      583 
                                                                                      584  data.print();
                                                                                      @@ -692,12 +692,12 @@
                                                                                      596 
                                                                                      597 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      598 inline Rules<Array_Type,Data_Rule_Type> * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules() {
                                                                                      -
                                                                                      599  return this->rules;
                                                                                      +
                                                                                      599  return this->rules;
                                                                                      600 }
                                                                                      601 
                                                                                      602 template <typename Array_Type, typename Data_Counter_Type, typename Data_Rule_Type, typename Data_Rule_Dyn_Type>
                                                                                      603 inline Rules<Array_Type,Data_Rule_Dyn_Type> * Support<Array_Type,Data_Counter_Type,Data_Rule_Type, Data_Rule_Dyn_Type>::get_rules_dyn() {
                                                                                      -
                                                                                      604  return this->rules_dyn;
                                                                                      +
                                                                                      604  return this->rules_dyn;
                                                                                      605 }
                                                                                      606 
                                                                                      607 
                                                                                      @@ -733,15 +733,9 @@
                                                                                      Support::get_current_stats
                                                                                      std::vector< double > * get_current_stats()
                                                                                      List current statistics.
                                                                                      Definition: support-meat.hpp:571
                                                                                      data
                                                                                      Data_Type &&counter_ data(std::move(counter_.data))
                                                                                      if
                                                                                      if(add_dims)
                                                                                      Definition: counters-meat.hpp:248
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      j
                                                                                      size_t size_t j
                                                                                      Definition: counters-meat.hpp:84
                                                                                      -
                                                                                      rules_
                                                                                      Data_Rule_Type * rules_
                                                                                      Definition: model-meat.hpp:380
                                                                                      -
                                                                                      delete_rules_dyn
                                                                                      this delete_rules_dyn
                                                                                      Definition: model-meat.hpp:425
                                                                                      -
                                                                                      size
                                                                                      return arrays2support size() - 1u
                                                                                      -
                                                                                      rules
                                                                                      Data_Rule_Type & rules
                                                                                      Definition: model-meat.hpp:371
                                                                                      -
                                                                                      delete_rules
                                                                                      this delete_rules
                                                                                      Definition: model-meat.hpp:386
                                                                                      -
                                                                                      counters_
                                                                                      Data_Counter_Type * counters_
                                                                                      Definition: model-meat.hpp:344
                                                                                      -
                                                                                      rules_dyn
                                                                                      this rules_dyn
                                                                                      Definition: model-meat.hpp:424
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      +
                                                                                      counters_
                                                                                      Data_Type * counters_
                                                                                      Definition: statscounter-meat.hpp:54
                                                                                      current_stats
                                                                                      current_stats
                                                                                      Definition: statscounter-meat.hpp:19
                                                                                      @@ -752,7 +746,7 @@ diff --git a/typedefs_8hpp.html b/typedefs_8hpp.html index 2fa170251..37dd79b96 100644 --- a/typedefs_8hpp.html +++ b/typedefs_8hpp.html @@ -177,18 +177,18 @@  Ascending sorting an array. More...
                                                                                        template<typename T > -T vec_inner_prod (const T *a, const T *b, size_t n) +T vec_inner_prod (const T *a, const T *b, size_t n)   template<> -double vec_inner_prod (const double *a, const double *b, size_t n) +double vec_inner_prod (const double *a, const double *b, size_t n)  
                                                                                      template<typename T > -bool vec_equal (const std::vector< T > &a, const std::vector< T > &b) +bool vec_equal (const std::vector< T > &a, const std::vector< T > &b)  Compares if -a- and -b- are equal. More...
                                                                                        template<typename T > -bool vec_equal_approx (const std::vector< T > &a, const std::vector< T > &b, double eps=1e-100) +bool vec_equal_approx (const std::vector< T > &a, const std::vector< T > &b, double eps=1e-100)  

                                                                                      @@ -624,7 +624,7 @@

                                                                                      • include
                                                                                      • barry
                                                                                      • typedefs.hpp
                                                                                        • -
                                                                                      • Generated on Wed Sep 27 2023 05:36:06 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                        • +
                                                                                      • Generated on Wed Sep 27 2023 22:53:07 for barry: Your go-to motif accountant by doxygen 1.9.1
                                                                                      diff --git a/typedefs_8hpp_source.html b/typedefs_8hpp_source.html index 20fe644a4..eb7370214 100644 --- a/typedefs_8hpp_source.html +++ b/typedefs_8hpp_source.html @@ -200,8 +200,8 @@
                                                                                      115  // 0x9e3779b9 is a 32 bit constant (comes from the golden ratio)
                                                                                      116  // << is a shift operator, something like lhs * 2^(rhs)
                                                                                      117  if (dat.size() > 1u)
                                                                                      -
                                                                                      118  for (size_t i = 1u; i < dat.size(); ++i)
                                                                                      -
                                                                                      119  hash ^= hasher(dat[i]) + 0x9e3779b9 + (hash<<6) + (hash>>2);
                                                                                      +
                                                                                      118  for (size_t i = 1u; i < dat.size(); ++i)
                                                                                      +
                                                                                      119  hash ^= hasher(dat[i]) + 0x9e3779b9 + (hash<<6) + (hash>>2);
                                                                                      120 
                                                                                      121  return hash;
                                                                                      122 
                                                                                      @@ -259,23 +259,23 @@
                                                                                      202 // Misc ------------------------------------------------------------------------
                                                                                      208 template <typename T>
                                                                                      210 inline bool vec_equal(
                                                                                      -
                                                                                      211  const std::vector< T > & a,
                                                                                      +
                                                                                      211  const std::vector< T > & a,
                                                                                      212  const std::vector< T > & b
                                                                                      213 ) {
                                                                                      214 
                                                                                      -
                                                                                      215  if (a.size() != b.size())
                                                                                      +
                                                                                      215  if (a.size() != b.size())
                                                                                      216  {
                                                                                      217 
                                                                                      218  std::string err = "-a- and -b- should have the same length. length(a) = " +
                                                                                      -
                                                                                      219  std::to_string(a.size()) + " and length(b) = " + std::to_string(b.size()) +
                                                                                      +
                                                                                      219  std::to_string(a.size()) + " and length(b) = " + std::to_string(b.size()) +
                                                                                      220  std::string(".");
                                                                                      221  throw std::length_error(err);
                                                                                      222 
                                                                                      223  }
                                                                                      224 
                                                                                      -
                                                                                      225  size_t i = 0;
                                                                                      -
                                                                                      226  while (a[i] == b[i]) {
                                                                                      -
                                                                                      227  if (++i == a.size())
                                                                                      +
                                                                                      225  size_t i = 0;
                                                                                      +
                                                                                      226  while (a[i] == b[i]) {
                                                                                      +
                                                                                      227  if (++i == a.size())
                                                                                      228  return true;
                                                                                      229  }
                                                                                      230 
                                                                                      @@ -284,22 +284,22 @@
                                                                                      233 
                                                                                      234 template <typename T>
                                                                                      235 inline bool vec_equal_approx(
                                                                                      -
                                                                                      236  const std::vector< T > & a,
                                                                                      +
                                                                                      236  const std::vector< T > & a,
                                                                                      237  const std::vector< T > & b,
                                                                                      238  double eps = 1e-100
                                                                                      239 ) {
                                                                                      240 
                                                                                      -
                                                                                      241  if (a.size() != b.size())
                                                                                      +
                                                                                      241  if (a.size() != b.size())
                                                                                      242  {
                                                                                      243  std::string err = "-a- and -b- should have the same length. length(a) = " +
                                                                                      -
                                                                                      244  std::to_string(a.size()) + " and length(b) = " + std::to_string(b.size()) +
                                                                                      +
                                                                                      244  std::to_string(a.size()) + " and length(b) = " + std::to_string(b.size()) +
                                                                                      245  std::string(".");
                                                                                      246  throw std::length_error(err);
                                                                                      247  }
                                                                                      248 
                                                                                      -
                                                                                      249  size_t i = 0;
                                                                                      -
                                                                                      250  while (static_cast<double>(std::fabs(a[i] - b[i])) < eps) {
                                                                                      -
                                                                                      251  if (++i == a.size())
                                                                                      +
                                                                                      249  size_t i = 0;
                                                                                      +
                                                                                      250  while (static_cast<double>(std::fabs(a[i] - b[i])) < eps) {
                                                                                      +
                                                                                      251  if (++i == a.size())
                                                                                      252  return true;
                                                                                      253  }
                                                                                      254 
                                                                                      @@ -311,7 +311,7 @@
                                                                                      261 #endif
                                                                                      262 template <typename T>
                                                                                      263 inline T vec_inner_prod(
                                                                                      -
                                                                                      264  const T * a,
                                                                                      +
                                                                                      264  const T * a,
                                                                                      265  const T * b,
                                                                                      266  size_t n
                                                                                      267 ) {
                                                                                      @@ -326,8 +326,8 @@
                                                                                      276  #endif
                                                                                      277  #endif
                                                                                      278  #endif
                                                                                      -
                                                                                      279  for (size_t i = 0u; i < n; ++i)
                                                                                      -
                                                                                      280  res += (*(a + i) * *(b + i));
                                                                                      +
                                                                                      279  for (size_t i = 0u; i < n; ++i)
                                                                                      +
                                                                                      280  res += (*(a + i) * *(b + i));
                                                                                      281 
                                                                                      282  return res;
                                                                                      283 
                                                                                      @@ -338,13 +338,13 @@
                                                                                      288 #endif
                                                                                      289 template <>
                                                                                      290 inline double vec_inner_prod(
                                                                                      -
                                                                                      291  const double * a,
                                                                                      +
                                                                                      291  const double * a,
                                                                                      292  const double * b,
                                                                                      293  size_t n
                                                                                      294 ) {
                                                                                      295 
                                                                                      296  double res = 0.0;
                                                                                      -
                                                                                      297  #ifdef __OPENMP
                                                                                      +
                                                                                      297  #if defined(__OPENMP) || defined(_OPENMP)
                                                                                      298  #pragma omp simd reduction(+:res)
                                                                                      299  #else
                                                                                      300  #ifdef __GNUC__
                                                                                      @@ -353,8 +353,8 @@
                                                                                      303  #endif
                                                                                      304  #endif
                                                                                      305  #endif
                                                                                      -
                                                                                      306  for (size_t i = 0u; i < n; ++i)
                                                                                      -
                                                                                      307  res += (*(a + i) * *(b + i));
                                                                                      +
                                                                                      306  for (size_t i = 0u; i < n; ++i)
                                                                                      +
                                                                                      307  res += (*(a + i) * *(b + i));
                                                                                      308 
                                                                                      309  return res;
                                                                                      310 
                                                                                      @@ -378,10 +378,9 @@
                                                                                      Entries::val
                                                                                      std::vector< Cell_Type > val
                                                                                      Definition: typedefs.hpp:82
                                                                                      Entries::~Entries
                                                                                      ~Entries()
                                                                                      Definition: typedefs.hpp:92
                                                                                      res
                                                                                      return res
                                                                                      Definition: counters-meat.hpp:265
                                                                                      -
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      hasher
                                                                                      Data_Type hasher(counter_.hasher)
                                                                                      Definition: counters-meat.hpp:141
                                                                                      +
                                                                                      i
                                                                                      size_t i
                                                                                      Definition: counters-meat.hpp:83
                                                                                      noexcept
                                                                                      Data_Type &&counter_ noexcept
                                                                                      Definition: counters-meat.hpp:27
                                                                                      -
                                                                                      a
                                                                                      size_t a
                                                                                      Definition: model-meat.hpp:1287
                                                                                      CHECK
                                                                                      Integer constants used to specify which cell should be check.
                                                                                      Definition: typedefs.hpp:26
                                                                                      CHECK::TWO
                                                                                      const int TWO
                                                                                      Definition: typedefs.hpp:30
                                                                                      CHECK::NONE
                                                                                      const int NONE
                                                                                      Definition: typedefs.hpp:28
                                                                                      @@ -415,7 +414,7 @@