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fix doi/relative links in docs
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malcolmbarrett committed May 24, 2020
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4 changes: 2 additions & 2 deletions README.Rmd
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Expand Up @@ -28,7 +28,7 @@ references:
page: 676-681
volume: '36'
issue: '3'
URL: 10.1093/bioinformatics/btz661
URL: 'https://doi.org/10.1093/bioinformatics/btz661'
params:
invalidate_cache: false
---
Expand Down Expand Up @@ -202,7 +202,7 @@ For more information, see [our paper in Bioinformatics](https://doi.org/10.1093/

## Contributing

Please read the [Contributor Guidelines](.github/CODE_OF_CONDUCT.md) prior to submitting a pull request to partition. Also note that this project is released with a [Contributor Code of Conduct](.github/CODE_OF_CONDUCT.md). By participating in this project you agree to abide by its terms.
Please read the [Contributor Guidelines](https://github.com/USCbiostats/partition/blob/master/.github/CONTRIBUTING.md) prior to submitting a pull request to partition. Also note that this project is released with a [Contributor Code of Conduct](https://github.com/USCbiostats/partition/blob/master/.github/CODE_OF_CONDUCT.md). By participating in this project you agree to abide by its terms.

## References

11 changes: 6 additions & 5 deletions README.md
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Expand Up @@ -221,23 +221,24 @@ discusses these issues in more depth (Millstein et al. 2020).

## Contributing

Please read the [Contributor Guidelines](.github/CODE_OF_CONDUCT.md)
Please read the [Contributor
Guidelines](https://github.com/USCbiostats/partition/blob/master/.github/CONTRIBUTING.md)
prior to submitting a pull request to partition. Also note that this
project is released with a [Contributor Code of
Conduct](.github/CODE_OF_CONDUCT.md). By participating in this project
you agree to abide by its terms.
Conduct](https://github.com/USCbiostats/partition/blob/master/.github/CODE_OF_CONDUCT.md).
By participating in this project you agree to abide by its terms.

## References

<div id="refs" class="references">
<div id="refs" class="references hanging-indent">

<div id="ref-R-partition">

Millstein, Joshua, Francesca Battaglin, Malcolm Barrett, Shu Cao, Wu
Zhang, Sebastian Stintzing, Volker Heinemann, and Heinz-Josef Lenz.
2020. “Partition: A Surjective Mapping Approach for Dimensionality
Reduction.” *Bioinformatics* 36 (3): 676–81.
[10.1093/bioinformatics/btz661](10.1093/bioinformatics/btz661).
<https://doi.org/10.1093/bioinformatics/btz661>.

</div>

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4 changes: 2 additions & 2 deletions inst/CITATION
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Expand Up @@ -9,7 +9,7 @@ citEntry(
volume = 36,
number = 3,
pages = "676–681",
url = "10.1093/bioinformatics/btz661",
url = "https://doi.org/10.1093/bioinformatics/btz661",
textVersion = "Millstein et al., (2020). Partition: a surjective mapping approach for dimensionality reduction. Bioinformatics, 36(3) 3, 676–681, https://doi.org/10.1093/bioinformatics/btz661"
)

Expand All @@ -22,7 +22,7 @@ citEntry(
volume = 5,
number = 47,
pages = "1991",
url = "1991",
url = "https://doi.org/10.21105/joss.01991",
textVersion = "Barrett et al., (2020). partition: A fast and flexible framework for data reduction in R. Journal of Open Source Software, 5(47), 1991, https://doi.org/10.21105/joss.01991"
)

5 changes: 5 additions & 0 deletions inst/WORDLIST
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Expand Up @@ -8,8 +8,11 @@ caae
Cao
COC
colonic
customizable
doi
DOI
et
ggcorplot
ggplot
ggplots
Heinemann
Expand All @@ -18,6 +21,7 @@ immunochemical
interpretable
intraclass
Intraclass
joss
kmeans
Lenz
LLoyd
Expand All @@ -26,6 +30,7 @@ microbiome
Microbiome
microbiomes
Microbiota
Millstein
nrow
OTU
OTUs
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2 changes: 1 addition & 1 deletion vignettes/introduction-to-partition.Rmd
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Expand Up @@ -31,7 +31,7 @@ references:
page: 676-681
volume: '36'
issue: '3'
URL: 10.1093/bioinformatics/btz661
URL: https://doi.org/10.1093/bioinformatics/btz661
vignette: >
%\VignetteIndexEntry{Introduction to Partition}
%\VignetteEngine{knitr::rmarkdown}
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