DESCRIPTION

Package: tcpl
Title: ToxCast Data Analysis Pipeline
Version: 3.2.0.9000
Authors@R: c(
    person("Richard S", "Judson",role = c("ctb","ths"), comment = c(ORCID = "0000-0002-2348-9633")),
    person("Dayne L", "Filer", role = "aut"),
    person("Jason","Brown", role = "cre", email = "brown.jason@epa.gov", comment = c(ORCID = "0009-0000-2294-641X")),
    person("Sarah E","Davidson-Fritz", role = "ctb",email = "davidsonfritz.sarah@epa.gov", comment = c(ORCID = "0000-0002-2891-9380")),
    person("Madison","Feshuk",role = "ctb",email = "feshuk.madison@epa.gov", comment = c(ORCID = "0000-0002-1390-6405")),
    person("Carter", "Thunes", role = "ctb", email = "thunes.carter@epa.gov"),
    person("Ashley", "Ko", role = "ctb", email = "ko.ashley@epa.gov"),
    person("Kelly", "Carstens", role = "ctb", email = "carstens.kelly@epa.gov", comment = c(ORCID = "0000-0002-1746-5379")),
    person("Todd", "Zurlinden", role="ctb", comment = c(ORCID = "0000-0003-1372-3913")),
    person("Lori","Kolaczkowski",role = "ctb"),
    person("Kurt", "Dunham", role = "ctb"),
    person("Parth", "Kothiya", role = "ctb"),
    person("Woodrow R", "Setzer", role = "ctb"),
    person("Matthew T", "Martin", role = c("ctb", "ths")),
    person("Katie", "Paul Friedman", role=c("ctb"), email = "paul-friedman.katie@epa.gov", comment = c(ORCID = "0000-0002-2710-1691"))
    )
Description: The ToxCast Data Analysis Pipeline ('tcpl') is an R package that manages, curve-fits, plots, and stores ToxCast data to populate its linked MySQL database, 'invitrodb'. The package was developed for the chemical screening data curated by the US EPA's Toxicity Forecaster (ToxCast) program, but 'tcpl' can be used to support diverse chemical screening efforts.
URL: https://github.com/USEPA/CompTox-ToxCast-tcpl, https://www.epa.gov/comptox-tools/toxicity-forecasting-toxcast
Depends:
    R (>= 3.5.0)
Imports:
    data.table (>= 1.15.0),
    DBI,
    RMariaDB,
    numDeriv,
    RColorBrewer,
    utils,
    stats,
    methods,
    graphics,
    grDevices,
    sqldf,
    dplyr,
    tidyr,
    plotly,
    tcplfit2,
    ggplot2,
    gridExtra,
    stringr,
    rlang,
    ctxR
Suggests:
    roxygen2,
    knitr,
    prettydoc,
    rmarkdown,
    htmlTable,
    testthat (>= 3.0.0),
    reshape2,
    viridis,
    kableExtra,
    colorspace,
    magrittr,
    vdiffr,
    httptest,
    rmdformats
License: MIT + file LICENSE
LazyData: true
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Encoding: UTF-8
Config/testthat/edition: 3
BugReports: https://github.com/USEPA/CompTox-ToxCast-tcpl/issues