v0.1.0-alpha
Pre-release
Pre-release
·
380 commits
to develop
since this release
This is the first pre-release of EPATADA on GitHub. It is linked to the 6/14/24 deployment of the TADAShiny application in the Posit Connect staging environment (EPA internal access only: https://rstudio-connect.dmap-stage.aws.epa.gov/content/da3ffe2f-b443-4051-a029-3adb491434cb).
What's Changed
- EPA-develop by @cristinamullin in #1
- Created TADA_AutoClean.R by @jakegreif in #2
- Update DESCRIPTION by @mthawley in #4
- Updated AutoClean; added ProfileCheck function by @jakegreif in #3
- Documented functions by @jakegreif in #5
- Setting up test folder. by @mthawley in #6
- Added internal data, functions that use internal data by @jakegreif in #7
- 1st draft of 4 flag page functions by @jakegreif in #13
- Draft MediaNotWater function by @cristinamullin in #14
- Updated .R files; AggregatedContinuousData function by @jakegreif in #23
- Simply moving to independent for now by @cristinamullin in #24
- General function updates by @jakegreif in #25
- QAPP functions by @cristinamullin in #26
- Updated ResultValueSpecialCharacters function by @jakegreif in #27
- Completed WQX threshold functions by @jakegreif in #28
- Updated QAPP functions and created censored data function placeholder by @cristinamullin in #29
- DepthProfileData function by @jakegreif in #35
- Draft InvalidCoordinates function by @cristinamullin in #36
- updated invalid coords by @cristinamullin in #38
- Created WQXTargetUnits; added it to WQX threshold functions by @jakegreif in #39
- Updated Special char and WQX target unit functions by @jakegreif in #43
- minor changes by @cristinamullin in #45
- Completed HarmonizationRefTable by @jakegreif in #65
- Added readWQPWebService function, updated license and description by @cristinamullin in #68
- Completed HarmonizeData function by @jakegreif in #78
- Added vignettes and data retrieval functions by @cristinamullin in #77
- Small updates by @jakegreif in #80
- testing vignette by @cristinamullin in #81
- minor documentation edits by @cristinamullin in #82
- Polished documentation by @jakegreif in #84
- Updating vignette and minor edits to function defaults by @cristinamullin in #87
- A few updates by @jakegreif in #90
- minor tweaks by @cristinamullin in #89
- Small vignette updates by @jakegreif in #91
- Added filter functions by @jakegreif in #92
- Internal data updates by @jakegreif in #93
- updating testing vignette by @cristinamullin in #94
- Cm may23 by @cristinamullin in #96
- Cm may25 by @cristinamullin in #97
- More vignette updates by @cristinamullin in #99
- Cm 7 5 by @cristinamullin in #100
- I recommend using the tidyverse style guide by @zsmith27 in #103
- Cm july13 by @cristinamullin in #104
- Nondetects by @cristinamullin in #106
- cleaning up by @cristinamullin in #107
- Testthat by @mthawley in #108
- Aug3 cm by @cristinamullin in #109
- Aug11cm by @cristinamullin in #110
- Updated contributing.md by @cristinamullin in #111
- Removed duplicate license file by @cristinamullin in #112
- Cm develop by @cristinamullin in #114
- pkgdown updates by @cristinamullin in #115
- Rebuilt GH pages by @cristinamullin in #116
- readme updates by @cristinamullin in #117
- GitHub pages by @cristinamullin in #118
- Deleted dependency section by @zsmith27 in #119
- Censoreddata by @cristinamullin in #120
- ignore_attributes in readWQPdata by @ldecicco-USGS in #121
- Documentation by @cristinamullin in #122
- Cmullin sept21 by @cristinamullin in #123
- Lazy load newest ref tables (fixes #72) by @nx10 in #127
- removed donttest by @cristinamullin in #128
- Cm develop oct4 by @cristinamullin in #133
- Update readme.md by @jbousquin in #135
- Reduced install and load to bare minimum given dependencies in DESCRIPTION. by @jbousquin in #136
- Additional r file types to ignore by @jbousquin in #134
- DepthProfileData Fix issue #137 by @jbousquin in #138
- Cm troubleshooting by @cristinamullin in #139
- Depth profile data by @jbousquin in #141
- Testdata by @cristinamullin in #142
- Cm depth by @cristinamullin in #146
- Check functions by @jbousquin in #154
- Cm nov3 by @cristinamullin in #156
- Flagfunctions by @cristinamullin in #160
- 11142022cm by @cristinamullin in #161
- Cm12012022 by @cristinamullin in #166
- Retrievaledits cm by @cristinamullin in #168
- update staging by @cristinamullin in #169
- Vignettes proofreading kh by @katiehealy in #171
- InvalidFraction example by @cristinamullin in #172
- Added examples to completed functions by @katiehealy in #173
- small changes by @cristinamullin in #174
- Update ResultFlagsDependent.R by @katiehealy in #175
- option to change sign of lat/long outside USA by @katiehealy in #178
- update staging by @cristinamullin in #180
- Update develop by @cristinamullin in #181
- Invalidcoordinatesvignette kh by @katiehealy in #184
- Retrieval updates by @cristinamullin in #185
- Update DataDiscoveryRetrieval.R by @ehinman in #187
- TADAbigdataRet chunking by site by @ehinman in #193
- Vignette and map animation updates by @cristinamullin in #195
- Troubleshooting cm by @cristinamullin in #203
- Update flag functions kh by @katiehealy in #201
- automated workflows by @cristinamullin in #207
- formatting by @cristinamullin in #208
- InvalidResultUnit function update by @cristinamullin in #209
- InvalidResultUnit function update by @katiehealy in #206
- Inputs spec chars eh by @ehinman in #205
- Update issue templates by @cristinamullin in #216
- Censored data eh by @ehinman in #217
- Flag names, min-function, minor clean ups to tests, vignette by @ehinman in #219
- small documentation update by @cristinamullin in #220
- Cleanup eh by @ehinman in #223
- Censored data 2 eh by @ehinman in #224
- Flagging prep eh by @ehinman in #228
- Update ResultFlagsIndependent.R by @ehinman in #232
- HarmonizationTemplate.csv updates by @cristinamullin in #231
- Created TADA boxplot function by @katiehealy in #234
- edits to data retrieval by @ehinman in #236
- Misc updates cm by @cristinamullin in #235
- QC Flag Function by @katiehealy in #237
- add hard coded limits by @ehinman in #238
- added char_type to big data query by @ehinman in #243
- updated censored functions, etc by @ehinman in #246
- Vignette review by @cristinamullin in #240
- build gh pages by @cristinamullin in #248
- Update harmonization vignette by @cristinamullin in #251
- new workflow by @cristinamullin in #252
- Map function, big data retrieval updates, etc. by @ehinman in #254
- Nmc review by @cristinamullin in #255
- Updates to censored data messages and small little tweaks. by @ehinman in #256
- Nwqmc updates cm by @cristinamullin in #258
- Flagging funcs by @ehinman in #259
- Histogram function by @katiehealy in #261
- utilities updates by @ehinman in #262
- update convert result units by @ehinman in #264
- Char ranges eh by @ehinman in #267
- Update Utilities.R by @ehinman in #266
- Filter alt eh by @ehinman in #268
- Update DataDiscoveryRetrieval.R by @ehinman in #269
- Newactions by @cristinamullin in #270
- Pseudo develop by @ehinman in #272
- Update TADAModule1.Rmd by @ehinman in #276
- contributing by @cristinamullin in #277
- Training eh by @ehinman in #278
- Small edits by @cristinamullin in #279
- Small edits by @cristinamullin in #280
- Training eh more by @ehinman in #281
- Cm training by @cristinamullin in #282
- Add units autoclean eh by @ehinman in #285
- Update TADATrainingShepherdstown.Rmd by @ehinman in #286
- Fixing minor error in InvalidResultUnit by @katiehealy in #288
- Updates cm by @cristinamullin in #287
- docs by @cristinamullin in #289
- Training feedback eh by @ehinman in #290
- id nearby sites and id potential duplicates by @ehinman in #283
- Vignettes by @cristinamullin in #291
- Desc eh by @ehinman in #294
- Update TADAModule1.Rmd by @ehinman in #295
- Update Figures.R by @ehinman in #296
- Cm updates by @cristinamullin in #300
- Function names eh by @ehinman in #299
- Small change by @cristinamullin in #301
- Deprecated chars eh by @ehinman in #302
- Update CensoredDataSuite.R by @ehinman in #304
- Exports and data names by @cristinamullin in #305
- combined stats and censored data summaries by @ehinman in #306
- Unit speciation eh by @ehinman in #308
- Harmonization template eh by @ehinman in #309
- Within org dups eh by @ehinman in #310
- Updated Activity Type Reference Table by @katiehealy in #312
- update figures by @ehinman in #311
- Small changes eh by @ehinman in #313
- Harmonization updates eh by @ehinman in #314
- Nsummation eh by @ehinman in #315
- 080223 cm by @cristinamullin in #316
- Update CensoredDataSuite.R by @ehinman in #320
- None 2 na by @ehinman in #324
- Small summation tweaks by @ehinman in #327
- Update Measure Qualifier Flag by @cristinamullin in #322
- Smol updates by @ehinman in #328
- 081023 cm by @cristinamullin in #329
- Smol updates by @ehinman in #330
- Smol updates by @ehinman in #335
- Contributing files, depth unit conversion update by @cristinamullin in #337
- Update ref files by @cristinamullin in #340
- Update README.md by @cristinamullin in #341
- correct ref by @cristinamullin in #342
- Cm by @cristinamullin in #343
- Fixes figure bug by @cristinamullin in #347
- Fixes plotting issues by @cristinamullin in #348
- populate scatter2 hoover text by @cristinamullin in #349
- 10302023 cm by @cristinamullin in #352
- change color of circle marker border by @renaemyers in #354
- add button to reset zoom on overview map by @renaemyers in #355
- fixes single org bug by @cristinamullin in #357
- add provider option to DR by @cristinamullin in #359
- Update Utilities.R by @hillarymarler in #365
- 12 7 23 cm by @cristinamullin in #368
- Update USGS_units_speciation.csv by @hillarymarler in #366
- 358 measurequalifiercode definitions by @hillarymarler in #369
- Builds consistency by @cristinamullin in #371
- 323 identifying censored data by @hillarymarler in #370
- Update TADAModule1.Rmd by @jesseboormanpadgett in #374
- Update Filtering.R by @hillarymarler in #373
- Updates by @cristinamullin in #379
- 158 remove empty all na columns by @hillarymarler in #376
- update deprecated chars function by @cristinamullin in #380
- Update Filtering.R by @hillarymarler in #382
- 336 original vs tada columns copies by @hillarymarler in #377
- Update Utilities.R by @hillarymarler in #385
- 378 detection limit unit conversions by @hillarymarler in #381
- 297 dynamic site radii based on dataset by @hillarymarler in #389
- Create required columns list and order by @cristinamullin in #388
- Pair Replicates Function by @katiehealy in #331
- Update vignettes hm by @hillarymarler in #390
- 372 create function to remove groundwater results by @hillarymarler in #391
- Fix TADA_HarmonizeSynonyms issue by @cristinamullin in #395
- fix max and min flags by @cristinamullin in #396
- Update setup instructions hm by @hillarymarler in #400
- TADA Dataretrieval multiple states by @hillarymarler in #406
- Updates from Shiny review by @cristinamullin in #404
- #346 - Add tribal boundaries to overview map by @renaemyers in #405
- 402 tada analysisdatafilter bug by @hillarymarler in #407
- Scatterplot issues by @hillarymarler in #408
- R5 package demo by @hillarymarler in #411
- R5 package demo by @hillarymarler in #412
- Update TADAR5.Rmd by @hillarymarler in #414
- Update TADAR5.Rmd by @hillarymarler in #415
- Update TADAR5.Rmd by @hillarymarler in #416
- 410 whole numbers for characteristic and measurement legends in tada overviewmap by @hillarymarler in #413
- 417 overview map bug by @hillarymarler in #418
- Fix pkgdown action by @cristinamullin in #419
- Maintenance by @cristinamullin in #421
- update export by @cristinamullin in #422
- 344 data retrieval updates by @cristinamullin in #428
- 375 range percent values 26 50 not handled correctly in tada convertspecialchars by @hillarymarler in #420
- Maintenance by @cristinamullin in #432
- tribal layers always load under circle markers by @renaemyers in #430
- 334 flag duplicates for multiple orgs weird behavior to check by @hillarymarler in #431
- Update test-ResultFlagsIndependent.R by @hillarymarler in #433
- merges 3 open PR's by @cristinamullin in #437
- Progress towards linking WQP to ATTAINS data by @kathryn-willi in #434
- 409 tada overviewmap tribal layer bug by @cristinamullin in #435
- 226 special characters function handling of percentages by @hillarymarler in #436
- 440 cant transform a data frame with duplicate names by @hillarymarler in #443
- show maps and figs by @cristinamullin in #444
- Update TADA_FlagContinuousData by @cristinamullin in #445
- Update continuous flag and training rmds by @cristinamullin in #453
- 398 remove unit conversions from tada harmonization template by @hillarymarler in #448
- Documentation updates from R8 review by @cristinamullin in #456
- Markdown demo by @hillarymarler in #455
- shapefile storage by @cristinamullin in #458
- Rmd review by @cristinamullin in #460
- Update TADAAssessmentUnitUseCase.Rmd by @hillarymarler in #461
- Color Palette Set Up by @hillarymarler in #462
- Trainingupdates by @hillarymarler in #468
- Update TADAModule1_BeginnerTraining.Rmd by @cristinamullin in #469
- Trainingupdates by @hillarymarler in #470
- GitHub release updates & review by @cristinamullin in #479
- 476 tada depthprofileplot title overlaps plot by @hillarymarler in #483
- 473 tada twocharacteristicscatterplot legend should not include fraction andor speciation if they are na by @hillarymarler in #480
New Contributors
- @jakegreif made their first contribution in #2
- @mthawley made their first contribution in #4
- @zsmith27 made their first contribution in #103
- @ldecicco-USGS made their first contribution in #121
- @nx10 made their first contribution in #127
- @jbousquin made their first contribution in #135
- @katiehealy made their first contribution in #171
- @ehinman made their first contribution in #187
- @renaemyers made their first contribution in #354
- @hillarymarler made their first contribution in #365
- @jesseboormanpadgett made their first contribution in #374
- @kathryn-willi made their first contribution in #434
Full Changelog: https://github.com/USEPA/EPATADA/commits/v0.1.0-alpha
Contributors
ldecicco-USGS, mthawley, and 11 other contributors