This is a collection of small library/scripts based on ete/biopython for phylogenetic analysis that I wrote for other projects. Some of them have proven to be quite useful, as I reuse them often. I don't want to maintain a repository for each of them so I am bundling them together into one super repository. Each parent-level folder is home to a module. This list will gradually grow (whenever I have some time to reorganize old code scattered across my hard-drive). The main objective is to prevent future students of the lab to unnecessary rewrite code ...
Warning : Missing documentation ...
- TreeLib : Extension of ete Tree module with several useful functions and code to perform tree simulation, distance-based clustering, etc ...
- SelBias : Module to assess (purifying/positive) selection and relaxation on branches of a tree.