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Python application

NERPA

  1. Reformat antismash5 output to antismash3 format
  2. Predict NRPS by 10-aa code
  3. Improve Nrpsp_redictor algorithm

Getting Started

git clone https://github.com/Vasiliy566/NERPA.git

Prerequisites

Requirements in requirements.txt file

install with following command:

pip3 install -r requirements.txt

Running the tests

to run test go to tests fiolder:

cd tests

and ryn pytest:

pytest .

Break down into end to end tests

There are two tests: test Piplines tests/Piplines_test.py and test Dictionary handler -> tests/Dictionary_handler.py

And coding style tests

Testt code style according to flake8

if not flake8 installed

pip install flake8

then run folowwing command in main repo

flake8

Built With

Versioning

For the versions available, see the tags on this repository.

Authors

  • Isaev Vasily - Coding - Vasiliy566

  • Gurevich Alexey - scientific director - Gurevich Alexey

  • Ol'ga kunyavskaya - scientific director

See also the list of contributors who participated in this project.

License

This project is licensed under the MIT License - see the LICENSE.md file for details