From 5c086b1b525af6bad372cc7e539cd414b0100368 Mon Sep 17 00:00:00 2001 From: "Michael T. Wolfinger" Date: Fri, 6 Jan 2023 23:01:53 +0100 Subject: [PATCH] This release features 165 viruses of the VEE serocomplex --- auspice/VEE.json | 52354 +++++++++ auspice/VEE_root-sequence.json | 12 + ...quencies.json => VEE_tip-frequencies.json} | 2444 +- auspice/automated_lineage_designations.tsv | 146 - auspice/veev.json | 88508 ---------------- auspice/veev_root-sequence.json | 12 - 6 files changed, 53381 insertions(+), 90095 deletions(-) create mode 100644 auspice/VEE.json create mode 100644 auspice/VEE_root-sequence.json rename auspice/{veev_tip-frequencies.json => VEE_tip-frequencies.json} (92%) delete mode 100644 auspice/automated_lineage_designations.tsv delete mode 100644 auspice/veev.json delete mode 100644 auspice/veev_root-sequence.json diff --git a/auspice/VEE.json b/auspice/VEE.json new file mode 100644 index 0000000..0dc744b --- /dev/null +++ b/auspice/VEE.json @@ -0,0 +1,52354 @@ +{ + "version": "v2", + "meta": { + "title": "Molecular epidemiology of Venezuelan equine encephalitis (VEE) complex viruses", + "updated": "2023-01-06", + "build_url": "https://github.com/ViennaRNA/VEEnext", + "maintainers": [ + { + "name": "Adriano de Bernardi Schneider", + "url": "https://adrianoschneider.com" + }, + { + "name": "Michael T. Wolfinger", + "url": "https://michaelwolfinger.com" + } + ], + "display_defaults": { + "color_by": "subtype", + "map_triplicate": true, + "geo_resolution": "place_of_collection" + }, + "genome_annotations": { + "nuc": { + "end": 11444, + "start": 1, + "strand": "+", + "seqid": "11036/reference.gb", + "type": "source" + }, + "6k": { + "end": 10000, + "seqid": "11036/reference.gb", + "start": 9833, + "strand": "+", + "type": "CDS" + }, + "CP": { + "end": 8386, + "seqid": "11036/reference.gb", + "start": 7562, + "strand": "+", + "type": "CDS" + }, + "E1": { + "end": 11326, + "seqid": "11036/reference.gb", + "start": 10001, + "strand": "+", + "type": "CDS" + }, + "E2": { + "end": 9832, + "seqid": "11036/reference.gb", + "start": 8564, + "strand": "+", + "type": "CDS" + }, + "E3": { + "end": 8563, + "seqid": "11036/reference.gb", + "start": 8387, + "strand": "+", + "type": "CDS" + }, + "nsP1": { + "end": 1649, + "seqid": "11036/reference.gb", + "start": 45, + "strand": "+", + "type": "CDS" + }, + "nsP2": { + "end": 4031, + "seqid": "11036/reference.gb", + "start": 1650, + "strand": "+", + "type": "CDS" + }, + "nsP3": { + "end": 5702, + "seqid": "11036/reference.gb", + "start": 4032, + "strand": "+", + "type": "CDS" + }, + "nsP4": { + "end": 7520, + "seqid": "11036/reference.gb", + "start": 5703, + "strand": "+", + "type": "CDS" + } + }, + "description": "*This work is made possible by the open sharing of genetic data by research groups from all over the world. We gratefully acknowledge their contributions. We thank Barbara Rath and Michael Passegger for their help with a preliminary version of this build.* \n\n**Citation**\n\nIf you use data provided here in your own work please link back to this site - Thank you! \n\n**Region Code** \n\n|||\n|---------------------------|-----|\n|IAB_VEEV |- Venezuelan equine encephalitis virus subtype IAB |\n|IC_VEEV |- Venezuelan equine encephalitis virus subtype IC |\n|ID_VEEV |- Venezuelan equine encephalitis virus subtype ID |\n|IE_VEEV |- Venezuelan equine encephalitis virus subtype IE |\n|II_EVEV |- Everglades virus |\n|IIIA_MUCV |- Mucambo virus subtype IIIA |\n|IIIB_TONV |- Tonate virus |\n|IIIC_MUCV |- Mucambo virus subtype IIIC |\n|IIID_MUCV |- Mucambo virus subtype IIID |\n|IV_PIXV |- Pixuna virus |\n|V_CABV |- Cabassou virus |\n|VI_RNV |- Rio Negro virus |\n|IF_MDPV |- Mosso das Pedras virus |\n|PIRAV |- Pirahy virus |\n", + "colorings": [ + { + "key": "gt", + "title": "Genotype", + "type": "categorical" + }, + { + "key": "subtype", + "title": "Subtype", + "type": "categorical", + "scale": [ + [ + "IE_VEEV", + "#3288C2" + ], + [ + "ID_VEEV", + "#2E548A" + ], + [ + "IC_VEEV", + "#AE6618" + ], + [ + "IAB_VEEV", + "#E0A500" + ], + [ + "II_EVEV", + "#5B3758" + ], + [ + "VI_RNV", + "#5A7D22" + ], + [ + "PIRAV", + "#36443F" + ], + [ + "IIIA_MUCV", + "#FBB2CA" + ], + [ + "IIIB_TONV", + "#9BC53D" + ], + [ + "IIIC_MUCV", + "#A24936" + ], + [ + "IIID_MUCV", + "#5F817F" + ], + [ + "IV_PIXV", + "#EA7317" + ], + [ + "V_CABV", + "#FDE74C" + ], + [ + "IF_MDPV", + "#8E4E9B" + ] + ] + }, + { + "key": "host", + "title": "Host", + "type": "categorical" + }, + { + "key": "num_date", + "title": "Sampling date", + "type": "continuous" + }, + { + "key": "region", + "title": "Region", + "type": "categorical", + "scale": [ + [ + "NAm", + "#d4ac0d" + ], + [ + "LA,C", + "#FFA630" + ] + ] + }, + { + "key": "country", + "title": "Country", + "type": "categorical" + }, + { + "key": "year", + "title": "Year", + "type": "categorical" + }, + { + "key": "author", + "title": "Author", + "type": "categorical" + } + ], + "filters": [ + "country", + "region", + "subtype", + "host", + "year", + "author" + ], + "geo_resolutions": [ + { + "key": "country", + "demes": { + "Peru": { + "latitude": -9.189967, + "longitude": -75.015152 + }, + "French_Guiana": { + "latitude": 3.933889, + "longitude": -53.125782 + }, + "Brazil": { + "latitude": -14.235004, + "longitude": -51.92528 + }, + "USA": { + "latitude": 37.09024, + "longitude": -95.712891 + }, + "Honduras": { + "latitude": 15.199999, + "longitude": -86.241905 + }, + "Colombia": { + "latitude": 4.570868, + "longitude": -74.297333 + }, + "Argentina": { + "latitude": -38.416097, + "longitude": -63.616672 + }, + "Panama": { + "latitude": 8.537981, + "longitude": -80.782127 + }, + "Trinidad_and_Tobago": { + "latitude": 10.691803, + "longitude": -61.222503 + }, + "Mexico": { + "latitude": 23.634501, + "longitude": -102.552784 + }, + "Nicaragua": { + "latitude": 12.865416, + "longitude": -85.207229 + }, + "Costa_Rica": { + "latitude": 9.748917, + "longitude": -83.753428 + }, + "Ecuador": { + "latitude": -1.831239, + "longitude": -78.183406 + }, + "Guatemala": { + "latitude": 15.783471, + "longitude": -90.230759 + }, + "Guyana": { + "latitude": 4.860416, + "longitude": -58.93018 + }, + "Venezuela": { + "latitude": 6.42375, + "longitude": -66.58973 + }, + "Belize": { + "latitude": 17.189877, + "longitude": -88.49765 + } + } + }, + { + "key": "region", + "demes": { + "NAm": { + "latitude": 47.0, + "longitude": -94.0 + }, + "LA,C": { + "latitude": -13.0, + "longitude": -59.0 + } + } + }, + { + "key": "place_of_collection", + "demes": { + "Santa_Rosa_Department": { + "latitude": 14.146807, + "longitude": -90.332254 + }, + "Las_Coaches": { + "latitude": 15.689053, + "longitude": -93.220384 + }, + "Izabal_Department": { + "latitude": 15.70828, + "longitude": -89.231588 + }, + "Tacoteno": { + "latitude": 18.003774, + "longitude": -94.522729 + }, + "French_Guiana": { + "latitude": 3.933889, + "longitude": -53.125782 + }, + "Brazil": { + "latitude": -14.235004, + "longitude": -51.92528 + }, + "Goajira": { + "latitude": 10.71393, + "longitude": -71.68142 + }, + "Falcon_State": { + "latitude": 11.27662, + "longitude": -69.560937 + }, + "Iquitos": { + "latitude": -3.766135, + "longitude": -73.296105 + }, + "Verzacruz": { + "latitude": 19.044638, + "longitude": -96.023045 + }, + "Bocas_del_Toro": { + "latitude": 9.406407, + "longitude": -82.280674 + }, + "Barinas": { + "latitude": 8.631844, + "longitude": -70.273489 + }, + "Cuninamarca": { + "latitude": 5.069592, + "longitude": -74.204289 + }, + "Puerto_Boyaca": { + "latitude": 5.977592, + "longitude": -74.577816 + }, + "Sontecomapan": { + "latitude": 18.504859, + "longitude": -95.023888 + }, + "Costa_Rica": { + "latitude": 9.748917, + "longitude": -83.753428 + }, + "Delta_Amacuso": { + "latitude": 9.163692, + "longitude": -61.331421 + }, + "Guatemala": { + "latitude": 15.783471, + "longitude": -90.230759 + }, + "Felipillo": { + "latitude": 9.097692, + "longitude": -79.323202 + }, + "El_Rincon": { + "latitude": 8.206137, + "longitude": -81.416975 + }, + "N_Santander": { + "latitude": 8.836646, + "longitude": -73.148812 + }, + "Gamboa": { + "latitude": 9.119205, + "longitude": -79.696091 + }, + "La_Guajira": { + "latitude": 11.376194, + "longitude": -72.653001 + }, + "Valle_del_Cauca": { + "latitude": 3.50585, + "longitude": -76.843911 + }, + "Melga\u00e7o": { + "latitude": -1.7375, + "longitude": -51.4554 + }, + "Piura": { + "latitude": -5.213048, + "longitude": -80.668479 + }, + "Chaco": { + "latitude": -26.496728, + "longitude": -60.683887 + }, + "Nicaragua": { + "latitude": 12.865416, + "longitude": -85.207229 + }, + "Minatitlan": { + "latitude": 17.985042, + "longitude": -94.569683 + }, + "Tumaco": { + "latitude": 1.793096, + "longitude": -78.797027 + }, + "Venezuela": { + "latitude": 6.42375, + "longitude": -66.58973 + }, + "Lozania": { + "latitude": 3.921049, + "longitude": -74.77829 + }, + "Canito": { + "latitude": 9.036388, + "longitude": -79.790278 + }, + "Oaxaca": { + "latitude": 17.064171, + "longitude": -96.713547 + }, + "Zulia": { + "latitude": 9.458024, + "longitude": -72.070622 + }, + "Aragua": { + "latitude": 10.290146, + "longitude": -67.461124 + }, + "Loreto": { + "latitude": -4.746511, + "longitude": -74.625466 + }, + "Texas": { + "latitude": 30.183564, + "longitude": -96.700261 + }, + "Honduras": { + "latitude": 15.199999, + "longitude": -86.241905 + }, + "Sinamaica": { + "latitude": 11.081439, + "longitude": -71.85575 + }, + "Argentina": { + "latitude": -38.416097, + "longitude": -63.616672 + }, + "Almirante": { + "latitude": 9.31149, + "longitude": -82.419068 + }, + "Chiapas_State": { + "latitude": 15.987823, + "longitude": -92.969953 + }, + "Panama": { + "latitude": 8.537981, + "longitude": -80.782127 + }, + "El_Dorado": { + "latitude": 16.846747, + "longitude": -93.71322 + }, + "Cali": { + "latitude": 3.424247, + "longitude": -76.536205 + }, + "Monte_San_Miguel": { + "latitude": 5.734744, + "longitude": -74.729561 + }, + "Pto_Concha": { + "latitude": 9.023975, + "longitude": -71.748667 + }, + "Miranda_State": { + "latitude": 10.270357, + "longitude": -66.263864 + }, + "Vinches": { + "latitude": -1.550879, + "longitude": -79.759868 + }, + "Darien": { + "latitude": 8.111861, + "longitude": -77.73558 + }, + "Guyana": { + "latitude": 4.860416, + "longitude": -58.93018 + }, + "Santa_Fe": { + "latitude": 8.645615, + "longitude": -78.152021 + }, + "Monagas": { + "latitude": 9.641098, + "longitude": -62.9963 + }, + "Yavari": { + "latitude": -4.682964, + "longitude": -72.431896 + }, + "Amazon_Basin": { + "latitude": -3.115454, + "longitude": -58.868824 + }, + "Yaviza": { + "latitude": 8.18493, + "longitude": -77.698113 + }, + "Catatumbo": { + "latitude": 9.062738, + "longitude": -72.236863 + }, + "Barranqueras": { + "latitude": -27.471321, + "longitude": -58.910033 + }, + "Ma\u00f1anitas": { + "latitude": 9.122888, + "longitude": -79.421175 + }, + "Colombia": { + "latitude": 4.570868, + "longitude": -74.297333 + }, + "Hoja_Redonda": { + "latitude": -13.546, + "longitude": -76.132 + }, + "Trinidad_and_Tobago": { + "latitude": 10.691803, + "longitude": -61.222503 + }, + "Ecuador": { + "latitude": -1.831239, + "longitude": -78.183406 + }, + "Pirai_do_Sul": { + "latitude": -24.557469, + "longitude": -49.929225 + }, + "Puerto_Barrios": { + "latitude": 15.692961, + "longitude": -88.60198 + }, + "Everglades": { + "latitude": 25.517982, + "longitude": -80.873633 + }, + "Bayana": { + "latitude": 9.169522, + "longitude": -78.774963 + }, + "Belize": { + "latitude": 17.189877, + "longitude": -88.49765 + }, + "La_Avellana": { + "latitude": 13.921746, + "longitude": -90.469506 + } + } + } + ], + "panels": [ + "tree", + "map", + "frequencies", + "entropy" + ] + }, + "tree": { + "name": "NODE_0000001", + "node_attrs": { + "div": 0, + "num_date": { + "value": 1801.9852743558768, + "confidence": [ + 1789.316391016616, + 1813.0408922206166 + ] + }, + "country": { + "value": "Brazil", + "confidence": { + "Brazil": 0.0714757408687338, + "Honduras": 0.05979482849055209, + "Mexico": 0.06347573886602371, + "Peru": 0.0657969813561896 + }, + "entropy": 2.830694884696146 + }, + "year": { + "value": "1997", + "confidence": { + "1971": 0.02222249814527879, + "1973": 0.022086596476355753, + "1997": 0.02243800069201953, + "2017": 0.02217991173710412 + }, + "entropy": 3.8498269689109903 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9881216952291642, + "NAm": 0.011878304770835933 + }, + "entropy": 0.06446449674270555 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "OK539813.1", + "node_attrs": { + "div": 0.9475853885858311, + "num_date": { + "value": 2017.313698630137, + "confidence": [ + 2017.313698630137, + 2017.313698630137 + ] + }, + "author": { + "author": "Tscha,M.K., Suzukawa,A.A., Rodrigues-Luiz,G.F., da Silva,A.M., Cataneo,A.H.D., Coelho,G.M., Ferreira,A.C., Medeiros,L.C.S., Mansur,D., Zanluca,C. and Duarte dos Santos,C.N.", + "value": "Tscha,M.K., Suzukawa,A.A., Rodrigues-Luiz,G.F., da Silva,A.M., Cataneo,A.H.D., Coelho,G.M., Ferreira,A.C., Medeiros,L.C.S., Mansur,D., Zanluca,C. and Duarte dos Santos,C.N." + }, + "country": { + "value": "Brazil", + "confidence": { + "Brazil": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Trichoprosopon sp." + }, + "year": { + "value": "2017", + "confidence": { + "2017": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "PIRAV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Pirai_do_Sul" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T2C", + "G3C", + "G7C", + "C11T", + "A12C", + "T13C", + "G18C", + "T19A", + "A20G", + "C22T", + "C24T", + "C29T", + "A30T", + "A31G", + "A32G", + "T33C", + "A34T", + "C35T", + "T37A", + "A43G", + "A53G", + "C65T", + "C68T", + "G71A", + "C81G", + "C87T", + "C89G", + "A90C", + "A92C", + "G93T", + "T96C", + "G116A", + "A125T", + "T146C", + "T161C", + "T185A", + "C188A", + "T192C", + "G194A", + "C197T", + "A200G", + "A201T", + "A209G", + "T221C", + "C223T", + "G224A", + "C227T", + "C228T", + "A236C", + "G245A", + "C248G", + "C251A", + "A255C", + "A257C", + "T266A", + "G269C", + "T281C", + "T290C", + "G293A", + "A297C", + "A298G", + "A299T", + "A308G", + "G314A", + "A320G", + "T321C", + "A323C", + "C326T", + "T332C", + "A335T", + "G336A", + "C338G", + "T356C", + "A357C", + "A358T", + "G360A", + "A361C", + "C362T", + "A365C", + "G375A", + "G380A", + "C383T", + "A384G", + "A385G", + "G386T", + "G389A", + "G393C", + "C401A", + "G402T", + "C403T", + "A404G", + "G405A", + "T412C", + "G413T", + "A414T", + "G423A", + "C432A", + "G433C", + "A437G", + "T443C", + "G449A", + "G453A", + "A454C", + "C455G", + "C458T", + "A460C", + "T462A", + "C470T", + "T471C", + "G474A", + "A476G", + "A482G", + "C491A", + "C503G", + "A512C", + "C515T", + "T521A", + "C524T", + "C527T", + "T530G", + "A532T", + "T533C", + "T536C", + "A539G", + "C542A", + "A543G", + "A544T", + "A548G", + "G551C", + "A555C", + "A557G", + "C560T", + "C563T", + "A572C", + "C575G", + "C584A", + "T593C", + "C606A", + "T611A", + "A614T", + "A617T", + "T624A", + "C626A", + "T630A", + "C631G", + "C635T", + "C644A", + "A653C", + "G656C", + "A660G", + "C661G", + "G662C", + "T665C", + "C678T", + "T687G", + "T695C", + "C702A", + "G703A", + "G704A", + "G710C", + "A711G", + "G712C", + "A713T", + "A716T", + "C717A", + "G719T", + "C722A", + "T728A", + "G731A", + "A737G", + "A743G", + "C752A", + "A753G", + "T758C", + "C761T", + "A762T", + "A764G", + "T767C", + "T770A", + "C776A", + "T779C", + "C785T", + "C788T", + "C791T", + "G794A", + "G797A", + "C803T", + "A806G", + "C807T", + "A810C", + "G812A", + "C815T", + "A824G", + "G827A", + "C840T", + "C848G", + "A850C", + "A853G", + "C854T", + "A855G", + "T857A", + "A859T", + "A863C", + "C867A", + "T872C", + "T883C", + "T887C", + "A909C", + "G911C", + "A947C", + "C950G", + "T953C", + "G957T", + "G962A", + "A963C", + "C968T", + "C971A", + "T981C", + "G983T", + "T984A", + "G992A", + "G998T", + "C1005T", + "T1007G", + "G1013T", + "C1022A", + "T1025C", + "C1037T", + "G1040C", + "C1043T", + "G1046C", + "T1052C", + "C1054T", + "C1055T", + "T1056C", + "C1061T", + "C1064T", + "A1073G", + "C1076T", + "C1080A", + "A1088C", + "C1094G", + "A1100T", + "C1103A", + "C1106T", + "T1109G", + "G1148C", + "C1155A", + "C1157A", + "T1160A", + "A1164C", + "G1166C", + "T1169C", + "T1172C", + "T1175C", + "T1178G", + "T1187C", + "C1190T", + "A1202G", + "G1211A", + "T1217C", + "C1220A", + "G1223C", + "T1229A", + "A1231G", + "A1232G", + "G1235A", + "G1242C", + "T1247C", + "A1250G", + "T1256C", + "A1259G", + "A1260C", + "A1262G", + "A1271C", + "G1274C", + "A1279G", + "C1280T", + "C1283T", + "C1284A", + "G1292A", + "A1293C", + "G1298A", + "C1304T", + "G1308A", + "G1310C", + "G1316C", + "A1317C", + "A1318G", + "A1319C", + "C1322T", + "G1325A", + "T1328A", + "A1331T", + "T1334A", + "G1335A", + "C1340T", + "A1343G", + "G1345A", + "G1349A", + "C1355G", + "C1367A", + "A1370G", + "G1373C", + "C1379T", + "C1385T", + "T1389A", + "G1395C", + "G1397C", + "A1403G", + "A1407C", + "T1408C", + "T1409G", + "G1410A", + "G1411A", + "G1412C", + "A1413T", + "G1414C", + "G1417T", + "C1418A", + "A1421G", + "T1422C", + "C1434T", + "G1436T", + "G1438T", + "A1439C", + "C1442G", + "C1448A", + "A1452C", + "A1453T", + "A1454G", + "T1455C", + "G1457C", + "T1459C", + "G1460T", + "G1461A", + "A1462C", + "G1463T", + "G1464A", + "C1466G", + "A1468G", + "A1469G", + "A1470G", + "G1472A", + "G1473C", + "A1474C", + "G1475A", + "G1478A", + "C1479G", + "A1481G", + "T1484A", + "C1485T", + "T1486G", + "G1487C", + "A1488G", + "T1490A", + "A1491C", + "C1492G", + "G1494T", + "C1496A", + "A1499G", + "C1506T", + "A1507C", + "G1509C", + "A1520G", + "A1523T", + "G1527A", + "A1529G", + "G1532C", + "G1535A", + "A1536G", + "A1537C", + "G1538A", + "G1542C", + "T1543G", + "A1545C", + "A1546T", + "G1547C", + "G1550A", + "C1553A", + "A1558C", + "G1559T", + "T1560G", + "C1563A", + "G1565A", + "A1571G", + "C1572T", + "A1574G", + "T1580A", + "G1584C", + "C1585A", + "T1586G", + "T1589A", + "G1593C", + "T1595C", + "A1597C", + "G1598C", + "G1604T", + "A1605G", + "C1606T", + "T1607G", + "C1616T", + "C1622T", + "G1628C", + "C1632T", + "G1634A", + "A1640T", + "A1643T", + "G1658A", + "A1664G", + "C1668A", + "G1673T", + "C1674A", + "T1685A", + "C1688G", + "A1689T", + "A1695G", + "T1700A", + "G1703A", + "G1704C", + "G1706A", + "G1709A", + "C1712T", + "C1715A", + "C1718G", + "T1724G", + "G1725A", + "G1727T", + "A1733T", + "T1736A", + "A1739G", + "C1742A", + "C1746T", + "A1748G", + "G1751A", + "A1763G", + "C1766A", + "C1772A", + "G1781A", + "T1784A", + "A1790G", + "G1791A", + "A1794G", + "G1799T", + "A1802G", + "C1805G", + "T1811C", + "G1817T", + "T1823C", + "G1830A", + "A1832C", + "G1835A", + "T1841A", + "C1850T", + "G1857A", + "G1859T", + "G1868A", + "G1871A", + "C1872G", + "A1873T", + "T1874G", + "C1883G", + "G1889C", + "T1895C", + "T1907C", + "G1910A", + "C1916G", + "C1919T", + "T1922A", + "G1946A", + "C1956T", + "G1958A", + "C1961T", + "C1967T", + "C1970A", + "C1973T", + "A1979G", + "A1982G", + "T1985G", + "G1988C", + "C1991T", + "T1997C", + "G2003A", + "G2013A", + "T2014C", + "G2015A", + "G2016A", + "A2021G", + "C2022G", + "T2024C", + "A2030G", + "A2042G", + "C2046A", + "T2051C", + "C2054T", + "A2055G", + "A2062C", + "G2063T", + "A2065G", + "A2066G", + "G2069A", + "T2072C", + "C2075G", + "A2081G", + "A2084G", + "C2085G", + "T2086C", + "G2088C", + "C2090G", + "C2093A", + "G2096T", + "G2102A", + "G2105A", + "A2106G", + "C2107T", + "A2108T", + "T2111A", + "C2115T", + "A2123C", + "T2126C", + "G2129A", + "G2150A", + "C2153T", + "C2154T", + "G2156A", + "G2159A", + "C2161T", + "A2163C", + "A2165T", + "C2175G", + "T2177A", + "T2178C", + "A2179T", + "C2180G", + "G2184A", + "C2192G", + "T2198A", + "A2207T", + "A2210G", + "A2213G", + "C2222T", + "G2225A", + "T2228C", + "C2234A", + "A2237T", + "A2240G", + "C2243T", + "C2252A", + "A2256C", + "A2258C", + "C2262A", + "G2267C", + "A2294T", + "A2298G", + "C2300G", + "A2301C", + "T2302A", + "G2306C", + "C2312G", + "A2319T", + "T2320C", + "G2321A", + "A2324G", + "G2327A", + "C2328A", + "G2330A", + "C2333T", + "C2336G", + "C2341T", + "T2348A", + "C2354T", + "A2357G", + "G2363T", + "C2364T", + "T2369C", + "C2382G", + "A2384C", + "A2400G", + "T2405C", + "T2411A", + "G2424T", + "G2429C", + "T2432A", + "C2433T", + "C2436A", + "G2437A", + "C2438G", + "G2441T", + "T2442C", + "G2444C", + "T2447A", + "C2450T", + "T2453G", + "T2456C", + "T2462C", + "A2477T", + "C2480T", + "A2483T", + "C2501A", + "C2520T", + "A2525G", + "T2531C", + "T2533A", + "C2534T", + "T2540C", + "G2552C", + "A2555G", + "G2558C", + "A2573C", + "T2576C", + "A2594T", + "C2606G", + "C2612G", + "C2615T", + "T2624C", + "A2633G", + "A2639G", + "C2645T", + "C2650A", + "A2651G", + "A2652T", + "A2653C", + "A2654T", + "A2658G", + "C2659A", + "A2661C", + "A2662C", + "G2663C", + "T2666A", + "A2668T", + "A2670G", + "T2672G", + "C2684T", + "A2685T", + "G2686T", + "T2687C", + "C2690T", + "G2693A", + "A2696C", + "A2698G", + "G2699A", + "G2702A", + "T2708C", + "G2711T", + "C2715T", + "C2717G", + "T2720G", + "C2723T", + "A2727C", + "G2729T", + "G2732C", + "G2738T", + "G2741A", + "G2744A", + "T2753A", + "C2765T", + "A2766G", + "A2767C", + "T2768G", + "A2771G", + "G2780A", + "G2783A", + "A2786C", + "G2795A", + "G2801C", + "C2805A", + "A2809G", + "G2810C", + "T2819C", + "C2822A", + "C2825T", + "C2831T", + "C2837A", + "G2843A", + "T2846C", + "G2856T", + "C2858A", + "A2863C", + "C2864A", + "C2867T", + "G2876C", + "T2879C", + "G2885A", + "G2888T", + "T2891G", + "G2897A", + "G2900C", + "G2901A", + "C2903T", + "G2910A", + "T2911C", + "G2912A", + "C2922T", + "G2924A", + "C2927T", + "G2936C", + "A2940G", + "T2942A", + "G2954C", + "G2955A", + "G2960A", + "A2966G", + "A2969C", + "C2972T", + "C2981A", + "G2987T", + "A2990G", + "T3011C", + "G3012A", + "C3013A", + "C3014T", + "C3026T", + "T3030C", + "G3032T", + "G3035C", + "A3036T", + "A3037G", + "A3038C", + "G3042A", + "A3043T", + "C3045A", + "C3046A", + "T3047G", + "C3049A", + "C3050T", + "G3054C", + "T3055C", + "C3056T", + "A3068G", + "G3071C", + "C3074T", + "G3077C", + "C3086G", + "A3092G", + "A3095G", + "G3098A", + "C3101G", + "G3107T", + "G3110A", + "C3113A", + "C3119T", + "T3122A", + "G3123A", + "A3124C", + "C3125A", + "A3126C", + "G3128T", + "C3131T", + "G3132A", + "A3134C", + "G3140A", + "G3150A", + "T3152C", + "G3153T", + "C3154T", + "T3156G", + "A3157C", + "T3158A", + "A3164G", + "A3171C", + "A3172G", + "G3173A", + "A3176C", + "C3177A", + "C3179T", + "A3182T", + "G3188A", + "T3193C", + "C3195T", + "C3200T", + "C3204A", + "G3206C", + "C3221T", + "A3224C", + "C3225G", + "T3231C", + "T3236C", + "A3239C", + "T3242C", + "C3243A", + "G3245C", + "T3248C", + "T3251C", + "A3260C", + "A3263G", + "C3264T", + "G3266C", + "G3269C", + "C3272A", + "A3273T", + "G3278A", + "C3287T", + "C3296T", + "A3299T", + "G3302T", + "C3307A", + "A3316T", + "C3317T", + "C3326T", + "A3327C", + "G3329C", + "G3330T", + "A3331G", + "A3332T", + "C3338T", + "G3340A", + "G3341C", + "C3342G", + "G3344A", + "A3347G", + "C3350A", + "C3363A", + "A3364T", + "G3368A", + "C3370G", + "A3371C", + "A3374T", + "G3377C", + "T3379C", + "G3381A", + "A3384T", + "T3386G", + "A3389T", + "A3390C", + "A3392C", + "G3393A", + "T3396C", + "C3401G", + "G3404A", + "A3405G", + "A3406G", + "C3410A", + "T3413A", + "A3414C", + "C3415G", + "C3417G", + "G3419T", + "C3420A", + "T3425G", + "T3431C", + "G3436C", + "C3437G", + "T3439C", + "A3440T", + "C3443T", + "C3444T", + "A3446G", + "G3449C", + "G3452A", + "G3455C", + "C3458T", + "T3461A", + "A3464G", + "G3467A", + "T3473C", + "T3476G", + "C3477T", + "C3485A", + "A3487G", + "G3495A", + "A3497C", + "C3503T", + "C3506A", + "C3520G", + "A3538G", + "G3539A", + "C3542A", + "C3543A", + "G3545A", + "T3548C", + "A3551G", + "C3560G", + "T3566G", + "A3567C", + "A3568G", + "G3569A", + "C3579A", + "C3580A", + "C3581A", + "G3587A", + "A3588C", + "C3589A", + "T3590C", + "T3593A", + "C3596G", + "C3600T", + "G3602A", + "T3603G", + "G3606A", + "A3608C", + "C3609T", + "T3620C", + "C3623G", + "T3625A", + "A3627T", + "G3628T", + "A3629T", + "T3630C", + "C3631A", + "T3632C", + "C3633A", + "C3635G", + "C3636T", + "T3641C", + "C3650T", + "C3655A", + "C3656A", + "G3657T", + "A3658C", + "G3659A", + "C3665T", + "T3671C", + "C3674T", + "A3675G", + "T3677G", + "G3678A", + "G3680T", + "G3684A", + "T3686C", + "G3692A", + "A3693C", + "G3695C", + "G3701C", + "T3704C", + "T3719C", + "A3731G", + "T3743C", + "C3752T", + "G3758C", + "C3760T", + "T3761G", + "G3764A", + "A3766G", + "A3770G", + "C3773T", + "C3774G", + "T3775C", + "G3776C", + "T3785C", + "A3791G", + "C3797T", + "T3800C", + "C3803G", + "A3804T", + "G3805C", + "C3806G", + "T3809C", + "C3812G", + "A3818G", + "A3828C", + "A3830C", + "T3845A", + "G3849A", + "G3850A", + "T3851C", + "T3854G", + "T3857C", + "T3860A", + "A3863T", + "C3864G", + "A3865G", + "G3866T", + "C3869T", + "T3874A", + "G3876A", + "C3878G", + "G3884C", + "C3887T", + "G3893C", + "A3896T", + "G3897T", + "T3898G", + "A3899C", + "C3902T", + "C3903A", + "T3904A", + "G3905A", + "G3908A", + "A3914T", + "A3923C", + "A3929G", + "A3935G", + "A3947C", + "A3948G", + "A3949C", + "A3951C", + "A3953G", + "C3954A", + "T3956G", + "C3958T", + "C3959T", + "C3960T", + "T3965C", + "C3968A", + "C3971T", + "A3973G", + "C3975G", + "T3976C", + "G3977A", + "C3980A", + "T3983A", + "T3987C", + "G3989C", + "C3992A", + "C3995T", + "C4007T", + "A4010G", + "G4011C", + "G4012A", + "A4013G", + "C4014G", + "T4015C", + "G4016T", + "T4019C", + "A4022G", + "C4025G", + "G4030C", + "C4031T", + "T4034C", + "C4037G", + "A4040G", + "T4046C", + "G4049C", + "G4052C", + "A4055C", + "T4064A", + "A4068C", + "C4069A", + "G4071T", + "C4073T", + "G4074A", + "A4076G", + "G4081C", + "A4082C", + "G4083C", + "G4089A", + "C4094T", + "A4097C", + "T4103C", + "A4104T", + "G4105C", + "A4112G", + "A4121T", + "T4124A", + "A4127T", + "G4136T", + "C4154T", + "G4157T", + "G4158A", + "G4160T", + "A4161T", + "C4166T", + "C4170T", + "C4173A", + "G4175A", + "A4181T", + "A4191G", + "A4192G", + "G4193A", + "G4203A", + "T4211G", + "C4213A", + "G4214A", + "A4219G", + "G4220A", + "C4226T", + "A4227G", + "T4228C", + "T4229A", + "A4235T", + "T4247C", + "A4251T", + "A4252C", + "C4253A", + "G4257A", + "T4258C", + "G4259A", + "A4262C", + "G4266C", + "C4277T", + "A4279G", + "A4282T", + "G4286T", + "G4290T", + "A4291C", + "G4295A", + "T4298C", + "T4302G", + "T4304A", + "T4310A", + "A4313G", + "A4316C", + "G4317A", + "C4325A", + "A4326G", + "A4327G", + "C4328G", + "C4334T", + "C4335A", + "A4337T", + "T4338A", + "C4339G", + "G4343T", + "G4352A", + "C4353T", + "A4364T", + "C4367A", + "A4370T", + "G4374T", + "A4379C", + "A4380G", + "A4381G", + "C4382A", + "A4385G", + "A4391G", + "C4394G", + "G4400A", + "T4404G", + "A4406T", + "C4409T", + "C4413T", + "G4415A", + "C4416T", + "A4424G", + "A4425C", + "C4430T", + "C4433A", + "A4442T", + "G4448C", + "G4462T", + "A4463G", + "A4479G", + "C4480T", + "C4483A", + "A4484G", + "G4490A", + "A4496G", + "A4499C", + "G4505A", + "A4506C", + "A4511G", + "G4514T", + "A4517G", + "A4526C", + "T4529C", + "A4530C", + "A4538G", + "T4541C", + "G4542A", + "C4547G", + "T4549C", + "A4550G", + "G4551T", + "T4559A", + "C4564T", + "G4565A", + "G4571A", + "T4574C", + "A4575C", + "G4577C", + "G4580C", + "T4583C", + "G4586T", + "G4589T", + "C4600T", + "G4607A", + "A4615T", + "C4619T", + "C4621T", + "A4623G", + "C4624T", + "C4625G", + "T4628C", + "A4631C", + "G4634A", + "T4638G", + "T4639A", + "T4640G", + "A4643G", + "C4647T", + "G4655A", + "T4658G", + "G4661A", + "G4671A", + "G4676C", + "A4683G", + "A4688G", + "T4694A", + "A4695C", + "C4697A", + "C4700A", + "G4709A", + "A4715C", + "A4716T", + "A4718C", + "G4721C", + "T4724C", + "A4725C", + "G4733A", + "T4740C", + "G4742C", + "C4745T", + "G4754T", + "A4758G", + "A4764G", + "C4766T", + "T4778C", + "A4781G", + "C4787A", + "T4799G", + "A4802G", + "A4805T", + "C4808T", + "A4809T", + "A4811T", + "A4814C", + "A4817G", + "A4818T", + "T4820A", + "A4823T", + "C4824T", + "C4841G", + "C4842T", + "T4847A", + "A4853C", + "T4856A", + "A4859G", + "C4860A", + "A4862G", + "G4863A", + "A4868T", + "G4874C", + "C4880A", + "A4883C", + "C4884A", + "C4886A", + "T4889A", + "A4895G", + "T4908A", + "A4910C", + "G4925C", + "C4931T", + "A4934G", + "C4937A", + "C4939G", + "T4940C", + "T4943G", + "A4950C", + "A4953G", + "T4955G", + "A4958G", + "T4962A", + "T4964A", + "C4965A", + "C4967A", + "A4971C", + "A4973G", + "T4976C", + "A4982C", + "G4988A", + "T4994G", + "A4996T", + "G4997C", + "A4999T", + "T5006C", + "C5010A", + "G5015A", + "C5019A", + "T5021A", + "A5026G", + "A5027T", + "C5028G", + "C5029T", + "C5032G", + "C5034T", + "C5036A", + "C5038T", + "G5043C", + "A5063G", + "A5066C", + "G5067A", + "A5068T", + "A5071T", + "A5072C", + "T5073G", + "C5074A", + "A5076C", + "A5078T", + "A5080C", + "G5083C", + "G5084A", + "G5085C", + "C5086A", + "G5091C", + "A5092C", + "A5094C", + "A5096G", + "G5100C", + "A5102G", + "T5105A", + "A5106G", + "T5107C", + "A5110T", + "G5114C", + "A5116C", + "T5117C", + "T5182C", + "G5184C", + "G5186A", + "T5187G", + "A5189G", + "G5190A", + "A5191C", + "A5192G", + "T5197C", + "G5200A", + "C5201T", + "C5205T", + "A5206G", + "A5207G", + "T5209G", + "G5210T", + "A5216G", + "C5219G", + "G5220A", + "G5222C", + "A5225T", + "T5228G", + "G5238A", + "C5239T", + "A5240T", + "C5241T", + "C5242G", + "T5243A", + "T5246G", + "G5247A", + "C5248T", + "G5249T", + "T5251C", + "C5252A", + "C5255A", + "A5259G", + "A5267G", + "T5270C", + "C5274T", + "A5275G", + "T5279C", + "T5280A", + "C5281G", + "C5285A", + "T5291A", + "T5293G", + "G5294T", + "C5360G", + "A5361T", + "T5363C", + "A5364C", + "G5366A", + "T5369C", + "A5370C", + "G5371A", + "T5373C", + "T5374C", + "A5376C", + "T5377C", + "G5378A", + "T5398G", + "A5402G", + "T5405A", + "G5408T", + "T5411C", + "G5412A", + "C5413T", + "C5416G", + "T5417C", + "G5424A", + "T5426C", + "A5430C", + "G5431C", + "C5433G", + "A5434T", + "A5435C", + "G5436C", + "C5437T", + "A5438T", + "T5444C", + "G5447T", + "A5448G", + "A5449C", + "A5450G", + "G5453C", + "C5454A", + "C5456G", + "A5457C", + "C5458T", + "C5460A", + "C5464G", + "G5487A", + "C5488G", + "C5489T", + "G5491T", + "C5492A", + "A5496G", + "G5497T", + "A5498G", + "A5499G", + "C5500T", + "A5502C", + "G5503C", + "C5505T", + "G5508A", + "A5585T", + "A5586T", + "G5587C", + "T5589C", + "C5590A", + "C5591G", + "G5592T", + "G5593C", + "C5594G", + "A5598T", + "G5599T", + "G5610T", + "T5611C", + "G5621A", + "A5627T", + "A5630G", + "A5632G", + "C5633G", + "G5637A", + "T5638G", + "C5642A", + "C5645T", + "C5662A", + "T5665A", + "C5666T", + "C5669G", + "A5675G", + "A5689T", + "A5702G", + "C5705T", + "C5708T", + "T5711C", + "T5720C", + "C5723G", + "A5728C", + "A5729G", + "T5735C", + "T5736C", + "A5744G", + "A5747G", + "G5756A", + "G5762A", + "G5763C", + "T5764C", + "G5765A", + "C5766T", + "C5771T", + "G5775A", + "G5777A", + "G5780C", + "C5781T", + "G5793A", + "A5794C", + "A5795C", + "T5796G", + "T5804C", + "G5805A", + "C5806T", + "C5826G", + "T5827A", + "A5830C", + "A5837G", + "G5838C", + "A5841C", + "T5842A", + "A5846T", + "T5856C", + "G5858A", + "T5863A", + "C5870T", + "T5879A", + "C5882T", + "G5885A", + "G5897A", + "C5901A", + "G5909T", + "G5912A", + "T5915C", + "A5924T", + "A5935C", + "T5942C", + "C5943T", + "A5946C", + "A5947G", + "A5948C", + "C5952T", + "T5957G", + "A5962T", + "T5963C", + "G5976A", + "G5977T", + "A5979G", + "A5980G", + "T5984C", + "C5996T", + "C5999A", + "T6000C", + "G6002C", + "T6005C", + "T6008A", + "C6011G", + "T6014C", + "T6015G", + "G6017T", + "A6026T", + "A6027G", + "G6028C", + "A6033G", + "G6037A", + "A6038C", + "G6039C", + "C6040A", + "T6044C", + "T6045C", + "C6046G", + "C6051T", + "G6057T", + "G6059C", + "A6062T", + "A6071T", + "G6078T", + "G6083C", + "C6084A", + "G6086A", + "T6098C", + "A6101G", + "G6107A", + "T6110G", + "T6117A", + "G6118A", + "A6122C", + "T6124C", + "A6125C", + "A6128T", + "A6133T", + "T6137C", + "C6140T", + "T6143C", + "C6144A", + "G6146A", + "C6161A", + "T6165G", + "C6166T", + "C6170T", + "C6173T", + "T6174C", + "A6182C", + "C6185T", + "G6187A", + "T6191C", + "C6194T", + "T6197A", + "T6204C", + "T6209C", + "C6212T", + "T6215C", + "C6227T", + "C6230G", + "T6233C", + "G6237C", + "C6242A", + "C6244A", + "A6248C", + "C6249A", + "A6254T", + "A6257G", + "G6260T", + "A6266C", + "G6267C", + "T6269A", + "T6272A", + "A6281T", + "C6282T", + "G6287A", + "T6290C", + "A6293C", + "G6297T", + "A6299T", + "T6302A", + "C6305A", + "A6308T", + "C6317T", + "T6326C", + "A6329C", + "A6336C", + "A6338C", + "G6344A", + "A6347G", + "T6351C", + "G6353A", + "C6359T", + "T6368C", + "G6377A", + "C6380T", + "T6392C", + "C6398T", + "T6401C", + "A6402G", + "T6404C", + "A6407C", + "T6410C", + "C6422T", + "A6425G", + "A6428G", + "T6434A", + "T6437A", + "T6441C", + "G6443A", + "T6446G", + "G6447C", + "A6449C", + "A6458C", + "A6459T", + "T6470A", + "T6473A", + "T6477C", + "A6479C", + "A6482G", + "G6488A", + "A6494G", + "T6497A", + "T6506C", + "G6507T", + "A6509C", + "G6512A", + "A6515G", + "C6516G", + "C6518A", + "T6521C", + "C6527T", + "G6533C", + "G6536A", + "C6539T", + "C6545T", + "C6551T", + "T6557C", + "T6566C", + "T6567C", + "A6593T", + "C6599A", + "A6602G", + "T6605C", + "C6615A", + "C6620T", + "G6623A", + "T6641G", + "A6650T", + "T6656A", + "G6662A", + "C6665T", + "G6668T", + "G6674C", + "C6677T", + "T6680C", + "C6681A", + "C6687T", + "G6689A", + "G6695A", + "A6710G", + "A6713G", + "C6722T", + "G6723A", + "C6725T", + "A6731T", + "G6734T", + "A6749T", + "C6758T", + "C6764T", + "T6770A", + "C6773A", + "C6782T", + "C6786T", + "A6787T", + "T6788C", + "A6795C", + "G6796C", + "T6797A", + "T6809A", + "C6812T", + "C6815T", + "G6818A", + "G6821A", + "C6824T", + "T6827C", + "C6839T", + "G6845A", + "G6848A", + "G6854T", + "A6860T", + "C6861T", + "C6869A", + "C6870T", + "A6875G", + "A6881T", + "C6890T", + "A6893C", + "G6896A", + "C6897T", + "G6899A", + "G6902A", + "G6905A", + "A6911T", + "A6914G", + "G6917A", + "A6920C", + "T6923C", + "G6926A", + "T6933A", + "C6944T", + "C6945T", + "G6947A", + "C6950G", + "T6953A", + "A6954G", + "A6955G", + "A6956C", + "G6959A", + "A6962G", + "A6968G", + "T6971C", + "A6974T", + "A6986G", + "T6989G", + "C6992T", + "G7001C", + "C7004G", + "G7013C", + "T7016C", + "A7019C", + "T7025C", + "C7034T", + "C7040G", + "A7041T", + "G7049A", + "T7050C", + "G7052C", + "T7055C", + "C7059A", + "G7061A", + "A7065C", + "C7066G", + "A7068G", + "C7070T", + "T7076A", + "C7091T", + "A7094C", + "T7097C", + "C7106A", + "A7112G", + "A7115T", + "C7118A", + "A7119G", + "A7120T", + "A7121C", + "C7127T", + "A7128G", + "G7130A", + "C7131T", + "C7139T", + "A7169G", + "T7181A", + "C7193G", + "C7196T", + "A7198T", + "G7199C", + "A7202G", + "A7208T", + "T7217C", + "C7220T", + "G7223T", + "C7230A", + "G7232T", + "C7238T", + "A7239T", + "G7241T", + "G7244C", + "C7250G", + "A7253C", + "T7259C", + "G7262C", + "G7265A", + "T7268C", + "T7271C", + "C7274T", + "C7275T", + "A7283G", + "C7284T", + "A7286G", + "A7298T", + "G7308C", + "C7316T", + "T7319C", + "G7322A", + "T7325C", + "T7328C", + "C7337G", + "C7341A", + "A7343G", + "A7346G", + "G7349A", + "C7350G", + "T7352G", + "G7355A", + "G7362A", + "C7363A", + "A7364G", + "C7374A", + "G7379C", + "T7386C", + "C7388G", + "G7389C", + "C7390A", + "A7391T", + "C7395A", + "G7397C", + "T7400C", + "A7401C", + "A7402T", + "G7403C", + "A7406T", + "G7418T", + "T7421C", + "A7425G", + "T7429A", + "G7431C", + "G7432A", + "C7439A", + "C7442G", + "A7448C", + "A7449G", + "T7450C", + "C7454A", + "T7460A", + "C7463A", + "G7466T", + "C7469T", + "T7477A", + "T7478A", + "G7481A", + "C7483A", + "G7489A", + "C7491A", + "A7492C", + "C7493G", + "A7499G", + "G7502T", + "A7511T", + "C7514A", + "A7525G", + "G7534A", + "C7537T", + "T7538C", + "G7539T", + "C7540A", + "G7541T", + "A7542T", + "C7543A", + "G7547T", + "C7549A", + "C7550T", + "T7553A", + "C7554T", + "T7570A", + "A7584T", + "C7595T", + "C7596A", + "A7597T", + "A7598C", + "T7599C", + "G7600A", + "C7603T", + "T7604G", + "C7606T", + "T7618C", + "G7619C", + "C7620A", + "G7622C", + "T7624A", + "T7627G", + "G7636A", + "T7640G", + "T7645A", + "A7646C", + "C7651G", + "G7652A", + "C7654T", + "C7655T", + "C7657T", + "T7659A", + "C7660T", + "G7663T", + "G7666A", + "A7667G", + "T7668C", + "G7669C", + "G7673A", + "G7675A", + "T7682C", + "G7684C", + "G7685A", + "C7688A", + "G7689A", + "C7693A", + "G7696T", + "C7699G", + "A7701G", + "C7703T", + "G7708T", + "T7709A", + "C7711G", + "G7714A", + "C7718A", + "C7720A", + "C7721T", + "G7723C", + "G7724A", + "A7725C", + "A7727G", + "C7728A", + "G7729A", + "C7731A", + "A7737G", + "G7738A", + "G7741T", + "T7747G", + "G7748C", + "C7749G", + "T7750C", + "A7757C", + "G7762A", + "A7764C", + "G7765T", + "G7766A", + "A7767G", + "C7771T", + "A7773C", + "C7775A", + "A7777T", + "C7782A", + "T7783C", + "G7788A", + "G7789T", + "T7792C", + "G7795A", + "A7796C", + "G7799C", + "G7800C", + "G7801A", + "A7802C", + "A7803C", + "A7809G", + "T7813C", + "A7814G", + "A7815G", + "A7816C", + "G7820A", + "G7821A", + "G7822A", + "A7823G", + "A7824G", + "A7832C", + "G7834A", + "G7837A", + "A7838C", + "G7841C", + "G7842A", + "C7845A", + "C7846A", + "A7849G", + "C7851A", + "C7854A", + "A7855G", + "A7859T", + "A7860C", + "C7861A", + "C7862G", + "A7863G", + "A7865C", + "T7867G", + "G7868A", + "G7869A", + "C7870A", + "A7871C", + "A7872C", + "A7874G", + "A7875G", + "G7879A", + "A7880G", + "A7881G", + "G7883A", + "C7884A", + "T7897A", + "C7900G", + "A7904C", + "A7912C", + "T7925C", + "T7933A", + "C7936T", + "A7942C", + "C7945T", + "T7948A", + "T7951C", + "G7954T", + "C7955T", + "C7960T", + "A7963G", + "T7968C", + "T7969C", + "G7975C", + "T7981A", + "G7987T", + "T7996G", + "G7999A", + "T8000C", + "A8002G", + "A8008C", + "A8012C", + "G8014T", + "C8038T", + "C8041G", + "C8050A", + "G8051T", + "G8059A", + "T8080C", + "G8089A", + "A8095G", + "C8098T", + "T8101C", + "C8104A", + "C8110T", + "A8119G", + "A8125T", + "C8137T", + "C8149G", + "A8152G", + "A8179G", + "T8194C", + "G8197C", + "G8200A", + "A8218G", + "A8221C", + "A8224T", + "G8227C", + "A8230G", + "C8243A", + "C8245A", + "C8248G", + "C8252A", + "G8266T", + "C8272T", + "G8275C", + "T8278G", + "A8290G", + "T8295C", + "A8305T", + "T8308C", + "A8309C", + "A8311C", + "C8317T", + "G8320A", + "G8327A", + "C8329A", + "T8331C", + "G8332A", + "C8356G", + "G8359A", + "T8365G", + "T8368G", + "T8389C", + "A8392C", + "T8395C", + "C8401A", + "C8408A", + "G8410C", + "C8416A", + "C8422G", + "A8431T", + "T8435A", + "C8436A", + "C8437T", + "C8438A", + "A8447C", + "G8449T", + "G8460A", + "A8462C", + "A8467C", + "A8470T", + "G8471A", + "G8473A", + "T8476A", + "C8481A", + "A8482G", + "C8488T", + "G8492C", + "C8493G", + "G8498A", + "A8500C", + "G8509T", + "G8511A", + "C8512T", + "T8515C", + "G8519C", + "G8521A", + "G8524C", + "A8529G", + "A8530C", + "C8533T", + "A8540C", + "A8541G", + "A8542G", + "C8546G", + "C8547G", + "A8548T", + "C8551T", + "A8555G", + "A8556G", + "G8557C", + "A8561C", + "A8563T", + "C8568T", + "G8569C", + "G8572T", + "G8575C", + "C8576T", + "G8584A", + "C8590T", + "G8593A", + "G8602A", + "G8605A", + "A8609T", + "T8610C", + "G8611T", + "A8616G", + "C8620T", + "A8621G", + "T8622C", + "A8624C", + "G8626A", + "C8632A", + "T8635C", + "C8638G", + "C8644T", + "T8647C", + "A8665G", + "G8668A", + "C8677T", + "C8680G", + "G8683C", + "T8686C", + "C8692T", + "G8696A", + "A8698C", + "C8699A", + "A8704G", + "G8707A", + "A8710C", + "A8713C", + "G8716T", + "G8719A", + "C8722T", + "A8725C", + "T8726A", + "C8732G", + "C8733T", + "T8735G", + "C8736G", + "C8737G", + "A8746C", + "C8752T", + "T8758A", + "A8762C", + "G8764C", + "C8767T", + "C8770T", + "A8771T", + "T8772A", + "G8773T", + "C8774A", + "T8776C", + "A8779G", + "A8780G", + "A8781T", + "T8785C", + "G8786T", + "A8787C", + "A8788C", + "A8792C", + "A8794G", + "A8797G", + "C8798T", + "T8803C", + "A8806G", + "T8809A", + "T8810C", + "C8811A", + "A8812G", + "C8815G", + "A8817G", + "A8821G", + "A8824C", + "C8825G", + "G8826C", + "G8827A", + "G8830A", + "T8833C", + "C8836T", + "T8839C", + "G8840A", + "A8842T", + "T8854C", + "C8863T", + "T8869A", + "A8870C", + "A8872C", + "T8878A", + "G8879C", + "G8885A", + "C8887T", + "C8896A", + "A8897C", + "G8899T", + "T8905C", + "G8908A", + "G8911A", + "T8914A", + "A8917G", + "A8920T", + "C8922T", + "A8923C", + "C8929A", + "T8937C", + "C8941G", + "T8944C", + "G8945A", + "A8946C", + "A8947C", + "G8950T", + "A8951G", + "A8952C", + "A8953T", + "C8958A", + "C8961A", + "G8965T", + "A8969C", + "A8971T", + "A8974G", + "C8975G", + "T8976A", + "G8977A", + "C8986A", + "C8989G", + "A8995G", + "A9001G", + "C9003T", + "A9004C", + "A9007G", + "C9010T", + "G9013A", + "C9017A", + "G9018T", + "C9019G", + "G9026T", + "T9028C", + "C9038A", + "A9039C", + "G9040C", + "A9041C", + "G9043C", + "G9045A", + "A9046G", + "T9049C", + "T9052A", + "T9055C", + "A9061G", + "C9068G", + "C9073T", + "A9076G", + "T9077C", + "C9079G", + "A9082G", + "G9085A", + "A9094G", + "C9100T", + "C9103T", + "A9104T", + "G9106A", + "A9107T", + "G9108C", + "C9109A", + "A9112G", + "G9114C", + "T9115C", + "G9116A", + "C9117A", + "T9118G", + "G9121A", + "C9122T", + "A9123T", + "G9124A", + "T9126C", + "G9127C", + "C9133G", + "G9137T", + "A9139G", + "G9142A", + "A9145G", + "G9147C", + "C9148A", + "G9149A", + "C9151A", + "C9163T", + "A9164C", + "C9172T", + "G9174A", + "C9177A", + "C9179A", + "A9181T", + "A9182T", + "T9183A", + "A9187C", + "C9193A", + "A9198G", + "A9200C", + "G9202A", + "G9203T", + "A9213T", + "C9214T", + "A9215G", + "A9230G", + "C9231T", + "A9232G", + "A9235T", + "G9238A", + "C9241T", + "G9244C", + "A9247G", + "C9254G", + "A9260G", + "G9274C", + "C9277T", + "A9285C", + "C9286A", + "A9288G", + "A9289G", + "G9292T", + "G9295A", + "C9300G", + "A9301C", + "G9302A", + "A9304C", + "A9307C", + "G9316A", + "A9322T", + "A9325G", + "G9328T", + "T9331C", + "A9337G", + "C9341G", + "C9343G", + "A9347G", + "G9350A", + "A9352G", + "G9355A", + "A9364G", + "A9370G", + "G9373T", + "A9379T", + "A9381C", + "G9382T", + "T9387A", + "G9388A", + "G9389T", + "T9394A", + "G9399A", + "G9400T", + "T9402A", + "A9404C", + "A9406G", + "T9407A", + "C9408A", + "A9409G", + "G9412A", + "T9413A", + "T9415C", + "C9416A", + "A9419G", + "A9421G", + "G9424T", + "A9430G", + "G9433C", + "A9434G", + "A9435C", + "C9436A", + "T9443C", + "T9445A", + "G9448C", + "C9451A", + "C9455A", + "C9457A", + "C9460G", + "G9463C", + "A9465G", + "T9466C", + "G9467C", + "G9468C", + "A9471T", + "A9472C", + "G9478T", + "T9479G", + "A9480T", + "C9481G", + "T9484G", + "C9487T", + "G9490A", + "C9491G", + "T9496A", + "T9497G", + "C9498A", + "T9499C", + "G9500C", + "C9505A", + "G9509A", + "T9510C", + "T9511C", + "A9514G", + "A9516C", + "C9517G", + "G9524A", + "C9526A", + "A9527G", + "C9528G", + "G9530A", + "G9532C", + "A9533G", + "T9538G", + "A9544G", + "G9550C", + "C9563G", + "G9568C", + "A9572C", + "G9574T", + "G9581C", + "A9583G", + "A9598T", + "A9602G", + "A9607T", + "T9610C", + "A9613G", + "C9614A", + "G9626A", + "A9628C", + "A9632G", + "C9633A", + "T9634G", + "C9640T", + "C9643T", + "C9644A", + "A9645G", + "C9655A", + "T9657G", + "C9661A", + "A9665G", + "C9667G", + "A9673G", + "T9674G", + "T9675G", + "G9676T", + "T9677A", + "C9678T", + "C9679T", + "T9682C", + "C9688G", + "A9692G", + "A9694G", + "G9695C", + "A9697C", + "C9699T", + "A9701C", + "G9706A", + "T9709C", + "A9712G", + "C9714G", + "G9715A", + "C9718T", + "A9719C", + "C9720T", + "C9721T", + "C9725A", + "T9728C", + "T9730G", + "A9736G", + "G9739T", + "A9742C", + "G9743A", + "G9748C", + "C9752T", + "C9757A", + "G9765A", + "A9766G", + "G9769C", + "C9772A", + "C9778T", + "C9781A", + "C9782A", + "A9783G", + "T9785G", + "T9790A", + "T9791C", + "T9793C", + "T9794C", + "G9795T", + "C9796G", + "C9797G", + "A9802G", + "G9808T", + "C9811T", + "A9817C", + "A9821C", + "C9822A", + "T9823G", + "G9826T", + "G9829A", + "A9835G", + "G9841C", + "A9847T", + "C9857T", + "C9859T", + "C9862A", + "C9869A", + "T9871C", + "C9874T", + "G9877A", + "A9881T", + "G9883T", + "C9892G", + "A9895G", + "C9896T", + "G9901A", + "G9910T", + "C9913T", + "C9917A", + "A9920G", + "C9922G", + "G9925C", + "T9927C", + "A9929G", + "C9930T", + "C9935A", + "G9937T", + "C9938T", + "G9940A", + "C9946T", + "G9947A", + "G9949C", + "G9956C", + "G9958T", + "G9971T", + "C9973G", + "C9974G", + "C9979A", + "G9989A", + "C9993T", + "G10006A", + "C10015T", + "G10018A", + "C10022G", + "G10024C", + "G10030A", + "G10031C", + "T10032C", + "G10036A", + "A10037G", + "C10048G", + "C10051A", + "A10054T", + "C10057G", + "A10058C", + "C10060A", + "G10064C", + "A10066G", + "G10069C", + "C10072T", + "C10079T", + "C10087T", + "C10095A", + "C10097A", + "C10098T", + "A10100G", + "A10103C", + "G10106C", + "A10110G", + "G10111T", + "C10112A", + "T10114A", + "A10115G", + "T10117C", + "T10120A", + "A10121G", + "C10122A", + "C10124G", + "G10126C", + "A10128G", + "C10129G", + "A10132T", + "T10141C", + "A10144C", + "G10156A", + "A10159G", + "G10160C", + "G10161A", + "A10162C", + "C10163G", + "T10165A", + "T10168G", + "C10174A", + "G10175T", + "C10177T", + "C10180A", + "A10192G", + "C10194T", + "C10204T", + "A10205G", + "C10206G", + "T10207C", + "G10208A", + "A10210T", + "G10211A", + "C10213A", + "A10215C", + "T10216A", + "A10217C", + "G10219C", + "T10225C", + "A10228G", + "G10231C", + "G10237A", + "C10240G", + "A10258T", + "T10273A", + "T10279C", + "C10303T", + "G10309C", + "A10313G", + "A10314T", + "A10315G", + "C10317T", + "A10318T", + "C10321T", + "A10325G", + "T10326A", + "G10327C", + "A10328C", + "A10329G", + "T10331G", + "C10336T", + "C10344G", + "C10345T", + "G10346A", + "T10348C", + "T10357C", + "C10358T", + "A10359C", + "G10360C", + "A10365T", + "A10369G", + "A10372C", + "A10378G", + "C10381A", + "G10385T", + "T10386C", + "C10387A", + "C10388A", + "A10389C", + "T10394A", + "T10395A", + "G10399C", + "A10405C", + "C10407G", + "T10408C", + "G10409A", + "C10411T", + "A10420T", + "T10421A", + "C10422G", + "C10426A", + "C10428A", + "C10429T", + "C10431T", + "A10432T", + "G10433C", + "T10434A", + "C10435T", + "G10438C", + "G10444C", + "T10447C", + "A10450C", + "T10456A", + "T10459A", + "C10462G", + "A10463T", + "A10464C", + "C10465G", + "A10474G", + "G10475A", + "C10477T", + "A10484C", + "A10489T", + "C10492G", + "C10496A", + "A10498T", + "C10503A", + "A10513G", + "C10516T", + "T10519C", + "C10523A", + "A10525C", + "A10536T", + "C10542G", + "C10543G", + "G10545A", + "A10546C", + "G10549A", + "C10552T", + "T10558C", + "A10560T", + "A10563C", + "C10564T", + "A10570C", + "G10573A", + "A10575T", + "A10579T", + "C10586G", + "A10587C", + "T10588A", + "G10589C", + "A10591G", + "A10594G", + "A10603C", + "A10607T", + "T10609G", + "A10612G", + "A10621G", + "A10622G", + "C10623T", + "C10624T", + "C10630T", + "A10631G", + "C10632A", + "T10633C", + "G10639A", + "T10654C", + "C10655A", + "A10660T", + "A10665T", + "G10666T", + "A10675C", + "G10676T", + "C10678T", + "C10683A", + "C10684T", + "A10685C", + "C10687G", + "G10696A", + "G10705A", + "G10706T", + "T10717C", + "G10723A", + "A10735G", + "A10747C", + "A10750C", + "T10751C", + "G10753T", + "G10756A", + "C10762T", + "C10765G", + "T10768C", + "G10778A", + "A10779G", + "A10780C", + "A10781G", + "A10783C", + "C10784T", + "A10785T", + "A10786G", + "G10787A", + "T10788C", + "G10789A", + "C10799A", + "C10810T", + "T10816G", + "T10825A", + "T10828C", + "A10831T", + "C10832T", + "A10834G", + "C10837T", + "C10846A", + "C10849A", + "C10852T", + "C10855T", + "C10856T", + "G10858C", + "T10861C", + "C10864T", + "A10865C", + "G10867A", + "G10870T", + "A10873T", + "A10876G", + "A10879G", + "G10882C", + "A10885C", + "C10886T", + "T10889G", + "A10891C", + "A10893G", + "C10897T", + "G10898T", + "A10899C", + "A10900C", + "C10903T", + "T10906C", + "C10907A", + "T10909C", + "T10918C", + "G10919A", + "T10920C", + "A10927G", + "T10928G", + "C10933T", + "T10936C", + "C10939A", + "G10942T", + "A10943G", + "G10952C", + "C10954G", + "A10956C", + "G10957T", + "T10961C", + "C10962A", + "G10963A", + "C10966T", + "A10967T", + "G10968C", + "T10969A", + "A10971G", + "A10972G", + "T10973C", + "A10975G", + "C10978T", + "A10979T", + "A10980C", + "C10984T", + "A10987C", + "G10988A", + "A10990T", + "A10994T", + "T10995C", + "A10996G", + "A10999G", + "A11002T", + "G11003A", + "G11004A", + "C11005G", + "A11006G", + "C11007T", + "A11012G", + "C11015A", + "G11017T", + "A11018C", + "A11020G", + "T11024A", + "G11027A", + "T11028C", + "G11030T", + "C11032G", + "G11033T", + "A11034C", + "T11035A", + "C11036T", + "G11039C", + "C11040A", + "C11041G", + "G11042A", + "A11044C", + "C11045T", + "A11046C", + "A11047G", + "T11051G", + "C11054T", + "T11059C", + "A11060T", + "G11062C", + "T11065C", + "T11068C", + "G11077A", + "A11079G", + "T11080C", + "C11086T", + "G11089C", + "G11097A", + "G11098A", + "C11099G", + "A11105T", + "C11107A", + "A11116C", + "T11117G", + "A11118T", + "T11119G", + "T11122C", + "A11125C", + "C11128T", + "A11129G", + "A11130C", + "T11140C", + "C11143T", + "G11146A", + "T11149C", + "T11155C", + "T11158C", + "A11159G", + "G11162A", + "G11164T", + "A11165G", + "C11166A", + "A11173G", + "A11175G", + "G11176T", + "T11177C", + "C11179G", + "C11184A", + "C11185A", + "C11186T", + "A11187C", + "G11188C", + "A11189T", + "A11191G", + "A11195T", + "G11198T", + "G11204A", + "C11206G", + "T11209A", + "A11210T", + "A11211C", + "A11212T", + "A11213T", + "T11228C", + "A11230G", + "A11233C", + "C11237T", + "C11240T", + "G11242T", + "G11243A", + "A11245T", + "G11248C", + "T11249A", + "A11251C", + "G11255A", + "T11256C", + "A11257T", + "T11260G", + "A11261C", + "T11263A", + "A11264G", + "A11266C", + "C11273A", + "A11275T", + "G11276A", + "T11279C", + "G11281A", + "A11285G", + "C11286T", + "T11287A", + "G11291A", + "G11293A", + "G11294A", + "C11296A", + "A11297G", + "T11298C", + "G11299C", + "G11303A", + "C11306G", + "T11307C", + "G11308A", + "C11310T", + "C11311T", + "A11312C", + "A11313G" + ], + "6k": [ + "E5D", + "H9Y", + "H13N", + "M17F", + "I20M", + "L29M", + "I30V", + "V32A", + "T33V", + "L35I", + "V39I", + "V42L", + "V47L", + "L48V", + "G53S", + "A54V" + ], + "CP": [ + "Y8F", + "P12Y", + "M13P", + "F15V", + "A20Q", + "A21P", + "F27V", + "D31N", + "P32S", + "F33Y", + "M36A", + "V38I", + "A42T", + "R43K", + "M45I", + "N47S", + "F50M", + "R54C", + "D55T", + "T56E", + "P57Q", + "E59G", + "A63R", + "K66Q", + "K68T", + "D69S", + "Q71P", + "Q72N", + "A74D", + "R76N", + "N79H", + "G80P", + "K81P", + "K83R", + "K85G", + "G87K", + "K88G", + "K91Q", + "K93Q", + "G94Q", + "P95Q", + "P97Q", + "T98K", + "N100S", + "Q101G", + "N102Q", + "G103K", + "N104P", + "K105G", + "K107G", + "A108K", + "M131I", + "I136T", + "M151L", + "D160E", + "A164S", + "L231M", + "V245A", + "V256I", + "M257T" + ], + "E1": [ + "P8A", + "V11P", + "I13V", + "N16K", + "N20Q", + "A22P", + "T32N", + "P33I", + "T34A", + "K35Q", + "V36L", + "K37S", + "L38I", + "I39V", + "T41E", + "L42V", + "N43R", + "G54H", + "L55V", + "D56E", + "A59S", + "T65M", + "T69G", + "A70T", + "V71I", + "Y72S", + "Q77H", + "K105V", + "A106V", + "M109D", + "K110R", + "S111A", + "A115G", + "A116T", + "Q120S", + "Y122F", + "V129S", + "Q130T", + "L132K", + "T136S", + "V137I", + "Q140H", + "T143N", + "A144V", + "V145H", + "N155S", + "V159I", + "M162L", + "L166I", + "T168N", + "R175S", + "Q179L", + "A181G", + "G182D", + "Y187F", + "D188A", + "Y192F", + "H196A", + "A197P", + "I203L", + "T208V", + "T211D", + "L219I", + "Q222L", + "K225N", + "A226S", + "T228N", + "I229L", + "A236S", + "E260S", + "I261V", + "Q262L", + "V263T", + "L286F", + "S297A", + "N298S", + "E300S", + "L303I", + "V307T", + "S310A", + "I315V", + "V318L", + "K319T", + "S321Q", + "K324R", + "S325P", + "K327S", + "V330I", + "I332S", + "G335K", + "T336V", + "T338A", + "L339I", + "K340Q", + "S342T", + "V343T", + "V344L", + "D345S", + "A347Q", + "E348N", + "Q349S", + "S351A", + "M354F", + "N360S", + "R366K", + "L367V", + "I369L", + "Y373V", + "K377A", + "I387V", + "V388I", + "T389E", + "Q392R", + "Y393Q", + "A395E", + "Q396S", + "T397S", + "T399S", + "A400S", + "V402M", + "K404S", + "T405S", + "L414F", + "G415S", + "S417T", + "V419T", + "I420M", + "I421L", + "I422V", + "L425I", + "V426I", + "T429V", + "V431I", + "A432T", + "M433A", + "V435M", + "L436A", + "T437I", + "N438R" + ], + "E2": [ + "T2I", + "E3D", + "E4D", + "M16S", + "K18R", + "I20A", + "D39E", + "V45I", + "L55M", + "P57V", + "S58G", + "M70Y", + "H71N", + "K73V", + "E75S", + "I77L", + "S83Q", + "H85R", + "R88A", + "V93I", + "A106P", + "D108N", + "M112L", + "D117E", + "P120L", + "V125A", + "E128T", + "K130A", + "T132N", + "P133H", + "L138E", + "H141Q", + "A147V", + "R152M", + "A155S", + "Q159T", + "K160H", + "R161K", + "L169V", + "S172P", + "M181L", + "S184T", + "A185K", + "Q187L", + "V188A", + "A192S", + "S195T", + "V196I", + "K201Q", + "G204D", + "T205K", + "Q206N", + "I207Y", + "N212S", + "K213Q", + "A214S", + "Y217F", + "N218D", + "T223V", + "L231V", + "N233D", + "D241A", + "K242R", + "A246G", + "A247T", + "L260V", + "T262A", + "E263K", + "E273A", + "M275K", + "V276L", + "G279D", + "F280Y", + "S282K", + "S284T", + "L285M", + "K286E", + "K290N", + "N291A", + "Y294Q", + "H299Q", + "D301G", + "G302P", + "E303V", + "E305D", + "Y306V", + "L310V", + "S312D", + "E313Q", + "V316T", + "N318T", + "V321I", + "T322G", + "E323N", + "K324E", + "P334A", + "A340P", + "N347D", + "L351M", + "V355I", + "T357E", + "H361S", + "M365R", + "I368V", + "L371G", + "S372I", + "I377V", + "V378L", + "T379M", + "I380L", + "A384G", + "T386L", + "L388M", + "F389L", + "D394N", + "R401Q", + "Q407R", + "L408V", + "F410L", + "C411L", + "L412V", + "T420Q" + ], + "E3": [ + "L8I", + "S17N", + "Q18K", + "M21L", + "R25K", + "K26Q", + "E29K", + "A32E", + "A36R", + "V38I", + "G42D", + "E45Q", + "E48G", + "K52R", + "P54G", + "K57G" + ], + "nsP1": [ + "P13A", + "A17S", + "T53S", + "T60I", + "K75N", + "K85R", + "A98T", + "K105L", + "D106T", + "D111N", + "K114G", + "E117Q", + "A120L", + "A121T", + "M123T", + "T124S", + "D127N", + "R130T", + "D137T", + "E139A", + "S140T", + "Y143H", + "E144K", + "Y163F", + "N167V", + "L188M", + "S194T", + "T206G", + "S215A", + "R220K", + "R223A", + "L225I", + "N237D", + "I240L", + "K269T", + "H270R", + "N271E", + "Y272F", + "V280A", + "A305S", + "M307L", + "C314S", + "T337I", + "L346M", + "D353E", + "K396R", + "E400Q", + "D412G", + "Q414K", + "M417L", + "A422T", + "K424N", + "K425R", + "V431M", + "R434K", + "S449T", + "V451L", + "I455P", + "G456N", + "S458I", + "L464F", + "R465I", + "D466E", + "K470L", + "M472T", + "E473T", + "D474K", + "Q475R", + "K476E", + "E477P", + "P479A", + "L481C", + "I482V", + "T483R", + "A484S", + "Q488S", + "E489Q", + "E495K", + "E496D", + "K498A", + "V500R", + "K501L", + "E505A", + "L506V", + "A514Q", + "V517L", + "E518A", + "T521V", + "E532D" + ], + "nsP2": [ + "L9M", + "S14C", + "T16A", + "E19Q", + "V26I", + "V48I", + "I49V", + "I51M", + "A61T", + "V70I", + "H75V", + "V122T", + "V123M", + "P125A", + "L133M", + "I136V", + "K138T", + "K139R", + "L146A", + "V147L", + "T153V", + "E158D", + "T171I", + "P176A", + "Y177L", + "V179I", + "L205M", + "I217V", + "I218Q", + "M224S", + "L227I", + "A231V", + "P245A", + "M251V", + "A259S", + "R263K", + "I268M", + "F295Y", + "P334Q", + "K335S", + "T337E", + "K338P", + "E340V", + "I341V", + "S346F", + "K350R", + "N373A", + "K387S", + "A403S", + "N405T", + "E417D", + "D418N", + "V421T", + "I431V", + "A436T", + "A455N", + "E462D", + "K463C", + "D465I", + "P466K", + "A467D", + "V469P", + "D492T", + "M493L", + "A495T", + "V501I", + "A502L", + "Y503A", + "K508R", + "H510N", + "V515A", + "L519I", + "L526V", + "L532I", + "P539S", + "I542L", + "P553Q", + "Y556F", + "K560H", + "E561C", + "R564N", + "Q565E", + "Q572M", + "P574R", + "V577A", + "A578T", + "T579S", + "V582M", + "D584E", + "M585I", + "N586G", + "T589R", + "L590V", + "R591S", + "D592E", + "S596T", + "V597A", + "S604R", + "H613R", + "E616N", + "A624G", + "K630R", + "D639E", + "K640R", + "P644K", + "T647H", + "D649E", + "S652A", + "E653N", + "H654Y", + "F659Y", + "R660F", + "S661H", + "A669E", + "E670S", + "I676V", + "V677I", + "V679I", + "T704M", + "K706R", + "L709A", + "G734N", + "Q739G", + "F742Y", + "A743T", + "K749N", + "V750C", + "L752K", + "I762M", + "K767A", + "K768Q", + "T770I", + "H771Y", + "K775R", + "L776A", + "G788Q", + "L789A", + "C794S" + ], + "nsP3": [ + "T13Q", + "A14S", + "E15K", + "G17A", + "V18L", + "V20I", + "E43N", + "S44C", + "Q48K", + "K54G", + "V58I", + "A61E", + "K63R", + "I66A", + "N74S", + "V76T", + "V79L", + "K83R", + "Q84L", + "E87S", + "S91A", + "V96I", + "D98E", + "N99G", + "R102S", + "A115S", + "N117G", + "L125V", + "M132L", + "R144M", + "T150V", + "T151K", + "I167L", + "A171T", + "V173A", + "A174S", + "A178V", + "K186N", + "A190V", + "Y195F", + "T197M", + "T198V", + "F203E", + "A214T", + "M218V", + "N222Q", + "T229S", + "E230D", + "N232H", + "S243G", + "S245G", + "T260S", + "T263S", + "I270M", + "H271Y", + "V278I", + "Q279H", + "S293T", + "T303S", + "K307Q", + "I308V", + "S311T", + "H312K", + "I314L", + "E322V", + "Y323F", + "L330I", + "K332S", + "P333V", + "A334G", + "P335S", + "T336I", + "E338Q", + "E345D", + "D346I", + "E347V", + "S348E", + "T349P", + "E350A", + "G351A", + "A352Q", + "E354P", + "T355P", + "A357P", + "I359A", + "N360I", + "R361S", + "D362A", + "L384S", + "A385P", + "S386A", + "E387T", + "M389T", + "S390N", + "Q392W", + "M393S", + "E397N", + "D399E", + "A403I", + "P404*", + "A406I", + "F407S", + "T410A", + "H415C", + "D418E", + "D420E", + "L421C", + "D443E", + "T444S", + "K445Q", + "S447H", + "F448P", + "M449P", + "V456G", + "A461M", + "P462R", + "V465I", + "R467P", + "Q468V", + "A469L", + "K473A", + "T476L", + "T478R", + "A486S", + "S487I", + "R489V", + "T490V", + "S491P", + "V493I", + "R518S", + "R519S", + "S520Q", + "G521S", + "R523L", + "V527S", + "N534R", + "V536R", + "A544E", + "F545Y", + "Y553F" + ], + "nsP4": [ + "Q9P", + "V21P", + "V25I", + "E31T", + "L32V", + "A35M", + "L42E", + "D43A", + "E46Q", + "I47Q", + "V54E", + "K78T", + "K82R", + "Y87F", + "G92I", + "K93G", + "L105V", + "S109A", + "N111D", + "R112H", + "A113Q", + "S115R", + "P117S", + "V119F", + "V126L", + "L128I", + "C139N", + "I141T", + "Y144F", + "L148I", + "S155V", + "S162N", + "E179Q", + "T181N", + "A189P", + "A199S", + "N234D", + "E235D", + "A249P", + "T253S", + "A269S", + "H272E", + "V341I", + "H362F", + "S365P", + "M382I", + "Q397H", + "S411T", + "K418G", + "S447C", + "T455R", + "N456D", + "K473V", + "K476E", + "E499V", + "L510I", + "T513S", + "A536P", + "H550E", + "A554K", + "F562L", + "A563H", + "L565I", + "K567L", + "M575V", + "V576E", + "G577H", + "M583A", + "V592E", + "A594D", + "R596K", + "H597T" + ] + }, + "labels": { + "aa": "6k: E5D, H9Y, H13N, M17F, I20M, L29M, I30V, V32A, T33V, L35I, V39I, V42L, V47L, L48V, G53S, A54V; CP: Y8F, P12Y, M13P, F15V, A20Q, A21P, F27V, D31N, P32S, F33Y, M36A, V38I, A42T, R43K, M45I, N47S, F50M, R54C, D55T, T56E, P57Q, E59G, A63R, K66Q, K68T, D69S, Q71P, Q72N, A74D, R76N, N79H, G80P, K81P, K83R, K85G, G87K, K88G, K91Q, K93Q, G94Q, P95Q, P97Q, T98K, N100S, Q101G, N102Q, G103K, N104P, K105G, K107G, A108K, M131I, I136T, M151L, D160E, A164S, L231M, V245A, V256I, M257T; E1: P8A, V11P, I13V, N16K, N20Q, A22P, T32N, P33I, T34A, K35Q, V36L, K37S, L38I, I39V, T41E, L42V, N43R, G54H, L55V, D56E, A59S, T65M, T69G, A70T, V71I, Y72S, Q77H, K105V, A106V, M109D, K110R, S111A, A115G, A116T, Q120S, Y122F, V129S, Q130T, L132K, T136S, V137I, Q140H, T143N, A144V, V145H, N155S, V159I, M162L, L166I, T168N, R175S, Q179L, A181G, G182D, Y187F, D188A, Y192F, H196A, A197P, I203L, T208V, T211D, L219I, Q222L, K225N, A226S, T228N, I229L, A236S, E260S, I261V, Q262L, V263T, L286F, S297A, N298S, E300S, L303I, V307T, S310A, I315V, V318L, K319T, S321Q, K324R, S325P, K327S, V330I, I332S, G335K, T336V, T338A, L339I, K340Q, S342T, V343T, V344L, D345S, A347Q, E348N, Q349S, S351A, M354F, N360S, R366K, L367V, I369L, Y373V, K377A, I387V, V388I, T389E, Q392R, Y393Q, A395E, Q396S, T397S, T399S, A400S, V402M, K404S, T405S, L414F, G415S, S417T, V419T, I420M, I421L, I422V, L425I, V426I, T429V, V431I, A432T, M433A, V435M, L436A, T437I, N438R; E2: T2I, E3D, E4D, M16S, K18R, I20A, D39E, V45I, L55M, P57V, S58G, M70Y, H71N, K73V, E75S, I77L, S83Q, H85R, R88A, V93I, A106P, D108N, M112L, D117E, P120L, V125A, E128T, K130A, T132N, P133H, L138E, H141Q, A147V, R152M, A155S, Q159T, K160H, R161K, L169V, S172P, M181L, S184T, A185K, Q187L, V188A, A192S, S195T, V196I, K201Q, G204D, T205K, Q206N, I207Y, N212S, K213Q, A214S, Y217F, N218D, T223V, L231V, N233D, D241A, K242R, A246G, A247T, L260V, T262A, E263K, E273A, M275K, V276L, G279D, F280Y, S282K, S284T, L285M, K286E, K290N, N291A, Y294Q, H299Q, D301G, G302P, E303V, E305D, Y306V, L310V, S312D, E313Q, V316T, N318T, V321I, T322G, E323N, K324E, P334A, A340P, N347D, L351M, V355I, T357E, H361S, M365R, I368V, L371G, S372I, I377V, V378L, T379M, I380L, A384G, T386L, L388M, F389L, D394N, R401Q, Q407R, L408V, F410L, C411L, L412V, T420Q; E3: L8I, S17N, Q18K, M21L, R25K, K26Q, E29K, A32E, A36R, V38I, G42D, E45Q, E48G, K52R, P54G, K57G; nsP1: P13A, A17S, T53S, T60I, K75N, K85R, A98T, K105L, D106T, D111N, K114G, E117Q, A120L, A121T, M123T, T124S, D127N, R130T, D137T, E139A, S140T, Y143H, E144K, Y163F, N167V, L188M, S194T, T206G, S215A, R220K, R223A, L225I, N237D, I240L, K269T, H270R, N271E, Y272F, V280A, A305S, M307L, C314S, T337I, L346M, D353E, K396R, E400Q, D412G, Q414K, M417L, A422T, K424N, K425R, V431M, R434K, S449T, V451L, I455P, G456N, S458I, L464F, R465I, D466E, K470L, M472T, E473T, D474K, Q475R, K476E, E477P, P479A, L481C, I482V, T483R, A484S, Q488S, E489Q, E495K, E496D, K498A, V500R, K501L, E505A, L506V, A514Q, V517L, E518A, T521V, E532D; nsP2: L9M, S14C, T16A, E19Q, V26I, V48I, I49V, I51M, A61T, V70I, H75V, V122T, V123M, P125A, L133M, I136V, K138T, K139R, L146A, V147L, T153V, E158D, T171I, P176A, Y177L, V179I, L205M, I217V, I218Q, M224S, L227I, A231V, P245A, M251V, A259S, R263K, I268M, F295Y, P334Q, K335S, T337E, K338P, E340V, I341V, S346F, K350R, N373A, K387S, A403S, N405T, E417D, D418N, V421T, I431V, A436T, A455N, E462D, K463C, D465I, P466K, A467D, V469P, D492T, M493L, A495T, V501I, A502L, Y503A, K508R, H510N, V515A, L519I, L526V, L532I, P539S, I542L, P553Q, Y556F, K560H, E561C, R564N, Q565E, Q572M, P574R, V577A, A578T, T579S, V582M, D584E, M585I, N586G, T589R, L590V, R591S, D592E, S596T, V597A, S604R, H613R, E616N, A624G, K630R, D639E, K640R, P644K, T647H, D649E, S652A, E653N, H654Y, F659Y, R660F, S661H, A669E, E670S, I676V, V677I, V679I, T704M, K706R, L709A, G734N, Q739G, F742Y, A743T, K749N, V750C, L752K, I762M, K767A, K768Q, T770I, H771Y, K775R, L776A, G788Q, L789A, C794S; nsP3: T13Q, A14S, E15K, G17A, V18L, V20I, E43N, S44C, Q48K, K54G, V58I, A61E, K63R, I66A, N74S, V76T, V79L, K83R, Q84L, E87S, S91A, V96I, D98E, N99G, R102S, A115S, N117G, L125V, M132L, R144M, T150V, T151K, I167L, A171T, V173A, A174S, A178V, K186N, A190V, Y195F, T197M, T198V, F203E, A214T, M218V, N222Q, T229S, E230D, N232H, S243G, S245G, T260S, T263S, I270M, H271Y, V278I, Q279H, S293T, T303S, K307Q, I308V, S311T, H312K, I314L, E322V, Y323F, L330I, K332S, P333V, A334G, P335S, T336I, E338Q, E345D, D346I, E347V, S348E, T349P, E350A, G351A, A352Q, E354P, T355P, A357P, I359A, N360I, R361S, D362A, L384S, A385P, S386A, E387T, M389T, S390N, Q392W, M393S, E397N, D399E, A403I, P404*, A406I, F407S, T410A, H415C, D418E, D420E, L421C, D443E, T444S, K445Q, S447H, F448P, M449P, V456G, A461M, P462R, V465I, R467P, Q468V, A469L, K473A, T476L, T478R, A486S, S487I, R489V, T490V, S491P, V493I, R518S, R519S, S520Q, G521S, R523L, V527S, N534R, V536R, A544E, F545Y, Y553F; nsP4: Q9P, V21P, V25I, E31T, L32V, A35M, L42E, D43A, E46Q, I47Q, V54E, K78T, K82R, Y87F, G92I, K93G, L105V, S109A, N111D, R112H, A113Q, S115R, P117S, V119F, V126L, L128I, C139N, I141T, Y144F, L148I, S155V, S162N, E179Q, T181N, A189P, A199S, N234D, E235D, A249P, T253S, A269S, H272E, V341I, H362F, S365P, M382I, Q397H, S411T, K418G, S447C, T455R, N456D, K473V, K476E, E499V, L510I, T513S, A536P, H550E, A554K, F562L, A563H, L565I, K567L, M575V, V576E, G577H, M583A, V592E, A594D, R596K, H597T" + } + } + }, + { + "name": "NODE_0000084", + "node_attrs": { + "div": 0.33082020141416885, + "num_date": { + "value": 1864.7903971962921, + "confidence": [ + 1855.7185664273616, + 1869.9923332739538 + ] + }, + "country": { + "value": "Brazil", + "confidence": { + "Argentina": 0.06635789799133206, + "Brazil": 0.08922281289153243, + "Peru": 0.07123609928666433, + "Venezuela": 0.06766593539272364 + }, + "entropy": 2.818635355772281 + }, + "year": { + "value": "1997", + "confidence": { + "1971": 0.02222249814527878, + "1973": 0.02208659647635575, + "1997": 0.02243800069201951, + "2017": 0.02217991173710413 + }, + "entropy": 3.8498269689109907 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9997225111594097 + }, + "entropy": 0.0025500089729595 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "NODE_0000085", + "node_attrs": { + "div": 0.4754733314141688, + "num_date": { + "value": 1897.3314582787912, + "confidence": [ + 1889.9883536316877, + 1900.7834623491724 + ] + }, + "country": { + "value": "Brazil", + "confidence": { + "Argentina": 0.08275914652930211, + "Brazil": 0.09805863059335919, + "Guyana": 0.059475831928793216, + "Peru": 0.06539155621100609 + }, + "entropy": 2.813714960528658 + }, + "year": { + "value": "1997", + "confidence": { + "1971": 0.02222249814527878, + "1973": 0.022086596476355753, + "1997": 0.022438000692019514, + "2017": 0.022179911737104114 + }, + "entropy": 3.84982696891099 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9995758845454589 + }, + "entropy": 0.003717496118396334 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T149C", + "C164T", + "G182A", + "A212C", + "C248T", + "G269A", + "T302C", + "A305C", + "G336T", + "C342T", + "G375A", + "C401G", + "G434A", + "A464C", + "C470A", + "T488C", + "C494T", + "G497A", + "A539G", + "T545C", + "C563A", + "T590G", + "G608T", + "T611G", + "A617C", + "G642T", + "A651G", + "C652T", + "A659G", + "C686T", + "T695C", + "C707A", + "T728G", + "G734A", + "C755T", + "C782T", + "C807T", + "G811A", + "A830C", + "C848A", + "G851A", + "C852A", + "T857C", + "C935T", + "T953C", + "G962T", + "T1052A", + "C1055T", + "G1082A", + "A1088T", + "C1103T", + "C1119T", + "C1191T", + "C1208G", + "A1214G", + "C1220G", + "A1232G", + "G1268A", + "A1271G", + "G1286A", + "G1316A", + "A1326G", + "G1345A", + "C1376A", + "A1404C", + "G1417C", + "C1418G", + "A1421G", + "T1422C", + "A1450G", + "C1467A", + "T1493A", + "A1519C", + "A1536C", + "A1537G", + "G1538C", + "A1546G", + "G1583A", + "T1586A", + "A1601G", + "A1605G", + "T1607C", + "G1634A", + "A1637G", + "A1643C", + "A1652T", + "G1661A", + "C1667T", + "G1676T", + "C1688T", + "G1750A", + "C1765G", + "C1775T", + "A1794G", + "G1826A", + "G1835A", + "G1856A", + "A1862T", + "G1868A", + "C1887A", + "C1892T", + "G1910A", + "C1973G", + "A2000G", + "A2025T", + "G2069A", + "C2097T", + "G2118A", + "G2144C", + "A2189C", + "C2234T", + "A2303C", + "C2309T", + "A2316C", + "A2317G", + "T2339A", + "A2357C", + "C2361T", + "C2379T", + "C2399T", + "A2400G", + "A2417T", + "G2424A", + "G2441A", + "G2469A", + "C2480T", + "C2564T", + "A2589C", + "A2590C", + "A2600C", + "G2604A", + "G2630A", + "A2632G", + "C2649A", + "A2652C", + "A2653G", + "G2657T", + "C2709T", + "A2807T", + "C2831T", + "C2882A", + "G2900A", + "G2918A", + "C2933T", + "C2957A", + "A2976T", + "G2984C", + "G3000C", + "C3029A", + "G3048A", + "C3056G", + "G3089A", + "A3095G", + "G3102A", + "A3109G", + "G3110C", + "C3131T", + "G3153C", + "T3161C", + "A3203G", + "C3204T", + "A3254C", + "T3270G", + "C3284T", + "T3348G", + "A3362T", + "C3366T", + "C3372A", + "A3374G", + "G3378A", + "T3379C", + "A3392G", + "G3393A", + "C3422A", + "T3445C", + "A3459C", + "C3482A", + "A3487C", + "T3514A", + "A3521C", + "T3530C", + "G3554T", + "C3578T", + "G3584A", + "G3602T", + "C3611T", + "A3617T", + "A3653G", + "A3675C", + "G3692C", + "T3704C", + "T3708C", + "T3713C", + "T3719C", + "C3734T", + "T3737C", + "C3752T", + "A3783C", + "T3785A", + "C3821T", + "A3839G", + "G3841A", + "T3851G", + "C3861A", + "G3872A", + "G3881A", + "A3953C", + "A3974G", + "C3975T", + "A4028C", + "T4029A", + "A4040C", + "T4046C", + "A4075C", + "G4080A", + "A4082T", + "T4088A", + "C4176G", + "G4187T", + "C4213G", + "T4232C", + "G4238C", + "A4241G", + "T4260G", + "A4265G", + "A4289C", + "A4314C", + "A4337G", + "G4343A", + "G4352T", + "C4353T", + "A4381G", + "A4385G", + "C4416T", + "C4457T", + "A4463G", + "C4547T", + "G4548A", + "A4550C", + "C4552A", + "G4568A", + "A4643C", + "G4655T", + "T4664C", + "T4682C", + "G4685A", + "G4730A", + "C4769T", + "C4787T", + "A4805C", + "A4811G", + "T4833C", + "A4901C", + "C4907T", + "C4917G", + "A4932C", + "A4934T", + "C4937T", + "G4997T", + "A5005C", + "T5006A", + "A5013C", + "A5065G", + "C5069T", + "A5076G", + "A5099C", + "A5125C", + "G5126T", + "A5130C", + "G5135A", + "A5145G", + "C5150T", + "A5151C", + "A5199T", + "C5214T", + "G5220C", + "A5225G", + "C5260A", + "T5270A", + "C5274T", + "A5275C", + "A5316G", + "C5317G", + "C5319T", + "G5322A", + "G5328T", + "C5333T", + "T5335C", + "T5338C", + "A5344C", + "G5345T", + "C5347G", + "T5349A", + "C5353T", + "G5354T", + "G5355T", + "A5357C", + "G5358A", + "A5359T", + "T5363C", + "G5368T", + "G5371A", + "G5399T", + "C5409A", + "G5414T", + "A5430G", + "A5434C", + "T5443C", + "C5451G", + "G5455A", + "A5463G", + "G5526A", + "G5561T", + "A5565G", + "C5574A", + "C5580A", + "T5711C", + "A5750G", + "A5753G", + "A5774G", + "G5783A", + "C5826T", + "G5864C", + "A5873C", + "A5883C", + "G5885T", + "C5888T", + "A5889C", + "A5891C", + "C5900A", + "G5903C", + "G5905A", + "A5927C", + "A5934C", + "A5936G", + "C5952T", + "T5960C", + "G5987A", + "C5993T", + "T6020C", + "A6033G", + "G6041A", + "G6049A", + "A6056G", + "T6074C", + "G6081A", + "C6095T", + "G6107T", + "G6108A", + "T6117G", + "C6144T", + "C6149T", + "C6161T", + "T6188C", + "T6191C", + "C6227T", + "C6294T", + "T6302G", + "G6344A", + "A6395C", + "A6402C", + "T6404G", + "A6421T", + "C6431T", + "G6447A", + "C6467T", + "A6476G", + "A6525G", + "C6527A", + "C6542T", + "A6573C", + "A6575C", + "C6581T", + "A6602G", + "T6605C", + "G6617T", + "C6620T", + "G6623A", + "C6635A", + "T6659C", + "C6671T", + "C6722T", + "C6740T", + "T6746A", + "C6758T", + "G6776A", + "C6782T", + "A6784C", + "T6788A", + "G6791T", + "T6794C", + "C6815T", + "C6878T", + "A6893G", + "G6905A", + "C6906T", + "G6917A", + "C6944T", + "A6956G", + "T6965C", + "C6999T", + "C7005T", + "T7025C", + "C7028T", + "C7043T", + "A7044C", + "C7070T", + "C7088T", + "A7094T", + "C7106T", + "G7107A", + "G7145A", + "C7151A", + "C7196T", + "C7214T", + "G7244T", + "C7250T", + "C7260A", + "C7274A", + "A7301G", + "A7310C", + "G7358A", + "C7373T", + "T7385C", + "A7425G", + "A7458G", + "A7461G", + "G7476A", + "C7487T", + "C7537T", + "A7551G", + "G7552A", + "C7567T", + "C7578G", + "C7607A", + "C7609A", + "A7631C", + "C7642T", + "C7651T", + "A7671G", + "G7724A", + "G7738C", + "A7758G", + "A7767C", + "C7769A", + "G7774A", + "C7775G", + "A7776G", + "A7777G", + "C7778A", + "G7780T", + "C7782G", + "A7784C", + "G7822A", + "A7829C", + "A7840G", + "G7841A", + "G7842A", + "C7850A", + "A7855C", + "C7873G", + "G7879T", + "A7894G", + "A7952C", + "G7954A", + "T7969A", + "C7972T", + "C7990A", + "C8038T", + "C8043T", + "G8044T", + "C8045T", + "G8068A", + "C8092T", + "A8131G", + "G8197A", + "G8206T", + "C8245T", + "C8260T", + "T8295C", + "T8331C", + "G8359A", + "C8362T", + "T8365A", + "C8416T", + "G8425T", + "T8434C", + "C8437A", + "C8455T", + "G8460A", + "A8470G", + "T8476C", + "A8483C", + "C8488A", + "A8541G", + "G8587A", + "T8622C", + "T8635A", + "A8672C", + "A8704G", + "G8707A", + "A8713T", + "A8788G", + "A8794T", + "T8810A", + "A8817G", + "C8818A", + "G8826A", + "G8827A", + "A8842G", + "T8851C", + "A8917C", + "C8922T", + "T8933A", + "C8941T", + "A8947G", + "C8980T", + "A8981T", + "C8986G", + "C9003T", + "G9018A", + "G9022C", + "A9041G", + "A9042T", + "G9050T", + "C9100G", + "C9109T", + "C9122A", + "G9124A", + "A9144C", + "A9145G", + "C9151G", + "C9152T", + "G9154C", + "G9170A", + "G9173A", + "A9176G", + "C9177G", + "A9178G", + "A9227C", + "G9238A", + "A9253G", + "A9261C", + "C9286T", + "G9295A", + "A9322G", + "A9325G", + "A9337C", + "A9364C", + "A9386G", + "C9393A", + "A9421G", + "A9434C", + "C9442G", + "G9464A", + "A9465C", + "C9481T", + "A9502G", + "C9505T", + "A9533C", + "G9565T", + "G9574A", + "A9589G", + "A9602G", + "G9625A", + "T9637C", + "A9656C", + "G9658A", + "T9666C", + "C9667T", + "G9670A", + "A9698G", + "G9707T", + "T9708G", + "A9742G", + "G9743A", + "C9849G", + "C9850T", + "C9913T", + "C9916A", + "G9928A", + "C9932A", + "G9940C", + "G9947C", + "C10000A", + "A10075C", + "T10099G", + "G10252A", + "T10294C", + "G10346C", + "T10351C", + "C10393A", + "T10468C", + "C10477A", + "C10567T", + "C10615T", + "A10631C", + "C10648T", + "C10672T", + "C10702A", + "C10795G", + "C10798A", + "G10819A", + "A10876C", + "T10924C", + "A11029G", + "G11033A", + "A11212G", + "A11284G", + "A11329G", + "C11331A", + "A11362G" + ], + "6k": [ + "T6S", + "V39L" + ], + "CP": [ + "P6R", + "Q37R", + "D55N", + "E59D", + "K66R", + "D69A", + "H70N", + "Q72G", + "Q73N", + "A74G", + "N75H", + "K90Q", + "G94K", + "P97T", + "N104K", + "K106N", + "M131L", + "T161I", + "V245A", + "M257T" + ], + "E1": [ + "A116P", + "T211P", + "E292D", + "D345N" + ], + "E2": [ + "I20T", + "S83T", + "H85R", + "R88Q", + "P120L", + "S124T", + "T140S", + "H141Q", + "A147V", + "R152H", + "K160V", + "A163S", + "Q187K", + "K194T", + "L197F", + "G203S", + "G204S", + "T205G", + "K222Q", + "N233T", + "M275V", + "T277N", + "N291H", + "D301T", + "K324Q", + "N347D", + "M365L", + "I368T", + "T379A", + "V382C", + "D394N" + ], + "E3": [ + "R25K", + "M33L", + "K52R" + ], + "nsP1": [ + "E56D", + "A98S", + "D111N", + "A200S", + "T203V", + "I228M", + "R256K", + "H270N", + "I428V", + "R434K", + "S458T", + "K469R", + "Q475K", + "E492A", + "K498R", + "K501R", + "T521A" + ], + "nsP2": [ + "R34K", + "T39S", + "I49V", + "P80T", + "T126S", + "V157I", + "K223R", + "H244Y", + "M251V", + "A259T", + "A274T", + "K314P", + "V319I", + "K328R", + "P334T", + "K335R", + "E336D", + "T443S", + "E451Q", + "A467T", + "V485I", + "Q487R", + "A502P", + "S541A", + "S567A", + "V577T", + "V582M", + "L599P", + "S604R", + "H613P", + "F622Y", + "E656D", + "I676L", + "Y687H", + "N712Q", + "S731N", + "K768N", + "C794S" + ], + "nsP3": [ + "E15A", + "G17S", + "P49A", + "A61G", + "S77A", + "I95L", + "N117S", + "V173I", + "A174E", + "M218I", + "P296A", + "E322D", + "H325P", + "E345G", + "T349A", + "E365A", + "T372A", + "I374L", + "S390C", + "E397Q", + "T410K", + "H415S", + "T429G", + "G431S", + "A433S", + "I435T", + "I436T", + "K438T", + "A439G", + "S440T", + "S441F", + "A442S", + "D443I", + "C446F", + "S447N", + "P460T", + "R467G", + "Q468P", + "V471A", + "P474A", + "R475H", + "T478A", + "V499I", + "T512A", + "R515S", + "P517T" + ], + "nsP4": [ + "R68K", + "K78Q", + "N111D", + "S116N", + "V127M", + "A136T", + "C139G", + "N234Q", + "Y240F", + "A249T", + "T275A", + "Q361P", + "H362Q", + "V469I", + "M575V", + "T586A", + "T587A", + "V592I" + ] + }, + "labels": { + "aa": "6k: T6S, V39L; CP: P6R, Q37R, D55N, E59D, K66R, D69A, H70N, Q72G, Q73N, A74G, N75H, K90Q, G94K, P97T, N104K, K106N, M131L, T161I, V245A, M257T; E1: A116P, T211P, E292D, D345N; E2: I20T, S83T, H85R, R88Q, P120L, S124T, T140S, H141Q, A147V, R152H, K160V, A163S, Q187K, K194T, L197F, G203S, G204S, T205G, K222Q, N233T, M275V, T277N, N291H, D301T, K324Q, N347D, M365L, I368T, T379A, V382C, D394N; E3: R25K, M33L, K52R; nsP1: E56D, A98S, D111N, A200S, T203V, I228M, R256K, H270N, I428V, R434K, S458T, K469R, Q475K, E492A, K498R, K501R, T521A; nsP2: R34K, T39S, I49V, P80T, T126S, V157I, K223R, H244Y, M251V, A259T, A274T, K314P, V319I, K328R, P334T, K335R, E336D, T443S, E451Q, A467T, V485I, Q487R, A502P, S541A, S567A, V577T, V582M, L599P, S604R, H613P, F622Y, E656D, I676L, Y687H, N712Q, S731N, K768N, C794S; nsP3: E15A, G17S, P49A, A61G, S77A, I95L, N117S, V173I, A174E, M218I, P296A, E322D, H325P, E345G, T349A, E365A, T372A, I374L, S390C, E397Q, T410K, H415S, T429G, G431S, A433S, I435T, I436T, K438T, A439G, S440T, S441F, A442S, D443I, C446F, S447N, P460T, R467G, Q468P, V471A, P474A, R475H, T478A, V499I, T512A, R515S, P517T; nsP4: R68K, K78Q, N111D, S116N, V127M, A136T, C139G, N234Q, Y240F, A249T, T275A, Q361P, H362Q, V469I, M575V, T586A, T587A, V592I" + } + }, + "children": [ + { + "name": "MK028854.1", + "node_attrs": { + "div": 1.1610195814141688, + "num_date": { + "value": 1978.9986301369863, + "confidence": [ + 1978.101095890411, + 1978.9986301369863 + ] + }, + "author": { + "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", + "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." + }, + "country": { + "value": "Brazil", + "confidence": { + "Brazil": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Aedes" + }, + "year": { + "value": "1798", + "confidence": { + "1798": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IF_MDPV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Brazil" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G18T", + "A27T", + "A30T", + "A31C", + "A83C", + "T143C", + "G170C", + "C188T", + "A191G", + "G245A", + "C254T", + "G275A", + "C278T", + "G293A", + "A299G", + "T311C", + "A323G", + "T332C", + "A335G", + "C338T", + "A349G", + "C353T", + "C362G", + "A365T", + "C371T", + "G380A", + "C383G", + "A414T", + "C416A", + "T422G", + "G423A", + "C425T", + "C426T", + "A437T", + "A438T", + "T443G", + "C446T", + "G449T", + "T452C", + "A472T", + "T473C", + "A476G", + "G479A", + "C485G", + "G489A", + "C503G", + "G509A", + "A512G", + "C524T", + "T530A", + "C542A", + "G551A", + "A554C", + "A570G", + "C584A", + "G587C", + "C620T", + "A623C", + "C626A", + "C644A", + "G650A", + "A653G", + "C671T", + "C689A", + "A707G", + "C708A", + "A713G", + "A716T", + "A737G", + "A743G", + "A757G", + "A764C", + "T767C", + "T770G", + "G773T", + "C776T", + "A798C", + "A800T", + "C803T", + "G809A", + "T822C", + "T836C", + "A842G", + "T905A", + "A908G", + "G911A", + "G944T", + "T956A", + "G957T", + "T962C", + "A977T", + "C986T", + "G1013T", + "T1028C", + "G1040T", + "C1076T", + "T1085G", + "C1094T", + "T1097C", + "A1112G", + "A1115G", + "C1137A", + "T1142A", + "C1157T", + "T1160G", + "G1184A", + "C1190T", + "A1193G", + "A1196C", + "A1202T", + "G1205A", + "G1223A", + "C1238T", + "T1247C", + "A1250G", + "T1265C", + "C1280T", + "G1298T", + "G1310T", + "T1313C", + "G1325A", + "T1328C", + "A1343G", + "A1346G", + "G1349C", + "C1355T", + "C1367T", + "A1370G", + "C1375A", + "T1382C", + "C1388T", + "A1391G", + "C1398T", + "G1400A", + "A1406C", + "G1412A", + "A1419T", + "T1427C", + "C1430A", + "G1433T", + "C1448T", + "A1449C", + "G1451T", + "T1455C", + "G1473A", + "G1475C", + "C1479A", + "C1485A", + "G1487C", + "T1490C", + "C1502T", + "C1505T", + "A1508C", + "G1511A", + "G1517A", + "A1523C", + "A1529C", + "G1532A", + "G1535A", + "C1544G", + "G1547A", + "C1553T", + "G1556A", + "T1560C", + "C1563A", + "A1568T", + "A1571G", + "A1574C", + "A1577T", + "T1589C", + "T1595A", + "T1619A", + "G1646A", + "A1649C", + "G1673T", + "C1679T", + "A1682G", + "T1685G", + "C1691T", + "C1696A", + "C1715A", + "C1718T", + "G1727A", + "T1730G", + "C1742A", + "C1746T", + "T1754C", + "C1761T", + "C1772T", + "C1779T", + "T1784C", + "G1787A", + "C1793G", + "C1796T", + "G1799A", + "A1800G", + "A1802G", + "C1805G", + "T1823G", + "A1824C", + "A1832C", + "C1850T", + "T1874C", + "T1880A", + "C1886G", + "A1901C", + "C1902A", + "C1913T", + "G1925C", + "C1935A", + "C1943T", + "C1956T", + "C1970T", + "A1982C", + "C1991T", + "C1994G", + "T1997C", + "A2012G", + "G2015A", + "T2024G", + "C2027A", + "T2033C", + "A2039T", + "C2045T", + "G2063A", + "A2081G", + "A2084G", + "T2086A", + "A2099G", + "G2102C", + "G2105A", + "A2108G", + "T2126G", + "G2129A", + "T2135C", + "G2156A", + "T2177G", + "A2183G", + "C2192T", + "T2198A", + "A2207G", + "A2210C", + "G2216A", + "A2219C", + "C2222A", + "G2225A", + "T2228A", + "A2237C", + "A2246T", + "A2249G", + "C2252A", + "A2258G", + "G2270C", + "A2282G", + "C2288T", + "C2312T", + "A2318T", + "A2324G", + "C2336T", + "T2338C", + "G2342C", + "C2345A", + "C2354T", + "T2369C", + "A2372T", + "C2375T", + "G2378A", + "C2381T", + "C2383T", + "A2384G", + "A2387G", + "C2393G", + "G2396C", + "T2405C", + "T2411G", + "T2414C", + "T2432A", + "C2438T", + "T2442C", + "G2444A", + "T2456C", + "A2471T", + "A2477T", + "A2483T", + "G2489T", + "G2492A", + "C2501T", + "C2519T", + "G2522T", + "A2525G", + "C2537T", + "T2540C", + "G2552C", + "C2570T", + "A2573T", + "A2580C", + "C2585T", + "A2591G", + "A2594C", + "T2603C", + "C2606T", + "C2642G", + "A2654G", + "G2655A", + "T2666A", + "T2672A", + "A2678C", + "C2684T", + "C2690T", + "G2699A", + "C2715T", + "C2717A", + "T2720C", + "G2741A", + "T2746C", + "A2772G", + "A2774G", + "G2780T", + "G2783A", + "A2786C", + "C2792T", + "A2798G", + "C2799T", + "G2801A", + "G2810A", + "C2822A", + "C2825G", + "A2826C", + "G2828A", + "G2834A", + "G2843A", + "C2849A", + "C2858T", + "C2859T", + "C2883T", + "T2891A", + "C2922T", + "G2930T", + "G2936C", + "A2940G", + "T2942G", + "C2949T", + "G2951A", + "G2954A", + "A2959G", + "C2975T", + "T2978A", + "T3008C", + "T3011C", + "C3017T", + "T3030A", + "A3038G", + "T3041G", + "C3049T", + "C3050T", + "G3051A", + "G3062A", + "T3065C", + "A3068G", + "G3071C", + "G3098C", + "C3101G", + "C3105T", + "G3107A", + "C3113G", + "C3119A", + "G3123A", + "T3152A", + "T3185C", + "G3188A", + "A3191T", + "C3195T", + "A3197G", + "G3210A", + "T3211C", + "G3212A", + "C3213A", + "C3218T", + "G3227T", + "G3233A", + "T3242G", + "C3243T", + "C3257G", + "A3260G", + "G3266C", + "G3269A", + "A3275C", + "A3276C", + "G3278T", + "T3281C", + "C3296T", + "A3305T", + "G3308C", + "T3311C", + "G3323A", + "A3328G", + "G3329T", + "C3338G", + "C3349T", + "C3350G", + "C3351A", + "G3352A", + "C3353G", + "G3356T", + "G3373A", + "A3384G", + "C3410A", + "T3413A", + "C3415A", + "G3416T", + "A3422G", + "T3431C", + "A3435G", + "G3436T", + "A3440G", + "C3444A", + "A3446T", + "G3452A", + "C3465T", + "T3473C", + "C3486G", + "C3487T", + "C3488T", + "G3495C", + "C3500G", + "C3503T", + "T3518A", + "T3524C", + "C3543A", + "C3560G", + "G3587A", + "T3593A", + "T3614A", + "T3632A", + "A3638G", + "C3650A", + "G3659A", + "C3665T", + "C3674T", + "G3701T", + "A3707C", + "G3722A", + "T3743C", + "T3749G", + "G3758T", + "A3770T", + "C3774T", + "C3779T", + "G3782C", + "A3791C", + "A3818G", + "A3824T", + "C3833G", + "C3842T", + "T3845A", + "T3854G", + "G3855A", + "T3860C", + "G3876A", + "G3884T", + "C3887T", + "A3896G", + "C3902T", + "G3905A", + "G3908A", + "G3920A", + "A3923T", + "A3929G", + "C3932T", + "A3935C", + "T3941C", + "A3947G", + "A3949G", + "C3954A", + "T3956G", + "T3965C", + "T3983C", + "C3992T", + "C3998A", + "C4007A", + "A4010G", + "C4031T", + "T4034A", + "C4037T", + "G4058T", + "T4064C", + "C4067T", + "G4070C", + "C4073G", + "G4074T", + "G4081C", + "C4085T", + "C4091T", + "C4094T", + "A4097T", + "C4106T", + "A4109G", + "A4112G", + "T4124A", + "A4127G", + "G4130T", + "G4142C", + "C4145T", + "C4169T", + "G4175A", + "T4187C", + "A4190C", + "G4199A", + "G4202T", + "A4205T", + "G4209A", + "G4210A", + "T4211C", + "A4217G", + "T4229C", + "A4235C", + "C4253T", + "A4256G", + "G4259T", + "G4268C", + "A4271G", + "T4274A", + "A4279G", + "G4301A", + "T4304A", + "C4307T", + "A4316G", + "C4319T", + "C4328T", + "T4331C", + "C4340T", + "T4349A", + "G4358T", + "C4361G", + "A4380G", + "A4389C", + "A4391G", + "A4403G", + "T4404G", + "A4406G", + "C4409T", + "G4415T", + "C4433T", + "A4442C", + "C4466T", + "C4480T", + "C4485T", + "G4487A", + "A4499C", + "A4508G", + "G4514C", + "T4516C", + "G4520A", + "A4526C", + "C4532T", + "C4535T", + "A4538T", + "T4549G", + "T4559G", + "G4580T", + "G4586A", + "G4589A", + "C4596T", + "C4601A", + "G4613A", + "G4622A", + "A4623G", + "C4624T", + "A4631T", + "T4640C", + "A4652G", + "T4655C", + "T4658A", + "G4670A", + "G4673A", + "G4691A", + "T4694C", + "C4697T", + "C4700T", + "T4712G", + "C4714A", + "A4718G", + "G4721A", + "A4734G", + "C4748T", + "G4754C", + "C4766T", + "T4775C", + "T4778C", + "A4781G", + "T4799G", + "C4808T", + "A4814G", + "A4817G", + "T4820G", + "A4823G", + "G4826C", + "G4829A", + "G4835A", + "C4838T", + "A4853C", + "T4856C", + "A4859G", + "A4862G", + "A4865C", + "C4880A", + "A4883T", + "G4892A", + "T4904C", + "T4919G", + "A4938G", + "T4955C", + "A4958G", + "T4970C", + "A4973C", + "A4982G", + "T4994G", + "C5003T", + "T5009C", + "G5015T", + "C5019T", + "T5021G", + "A5025G", + "A5026C", + "C5028A", + "A5030C", + "G5031C", + "C5032T", + "G5040C", + "G5042A", + "G5043A", + "C5055T", + "G5060C", + "G5061C", + "A5063T", + "A5068G", + "A5071C", + "C5074G", + "A5080G", + "G5081A", + "C5088G", + "T5090C", + "A5092G", + "A5094G", + "A5096G", + "A5097G", + "G5100A", + "A5102T", + "C5103A", + "T5105C", + "A5106T", + "T5107G", + "A5110T", + "G5114A", + "A5116C", + "T5117C", + "T5126C", + "C5127T", + "C5137G", + "T5138A", + "A5140G", + "G5148T", + "T5152G", + "T5197G", + "G5198A", + "G5200A", + "C5201A", + "A5206G", + "C5211T", + "A5212G", + "G5213A", + "C5219G", + "G5231T", + "C5234T", + "G5235A", + "C5236T", + "T5243A", + "G5247A", + "C5255G", + "T5258A", + "A5259G", + "A5268G", + "T5276G", + "T5279C", + "C5282A", + "A5307G", + "C5310T", + "T5320C", + "G5321A", + "G5326A", + "A5337T", + "C5339A", + "A5340G", + "G5341A", + "A5343G", + "T5348C", + "G5351A", + "C5357T", + "A5364T", + "A5370G", + "T5373C", + "T5374G", + "C5375G", + "A5376T", + "T5377A", + "G5380C", + "G5381T", + "G5383A", + "T5386C", + "G5388A", + "G5390T", + "T5391A", + "T5393A", + "A5394G", + "T5395C", + "G5396A", + "T5398C", + "A5400C", + "C5403G", + "G5406A", + "T5407C", + "C5410G", + "G5412C", + "C5415A", + "T5417A", + "G5420T", + "A5423G", + "T5425C", + "T5426G", + "T5427G", + "G5431T", + "A5432C", + "C5433T", + "A5438T", + "C5439G", + "T5441C", + "C5445T", + "G5447C", + "A5449G", + "G5453A", + "C5454A", + "A5457T", + "G5465T", + "C5466T", + "G5468C", + "C5489T", + "A5490G", + "T5495A", + "A5496G", + "A5502G", + "C5504T", + "C5505T", + "T5506C", + "A5507T", + "C5510A", + "T5511C", + "C5512A", + "A5515C", + "C5517A", + "C5520T", + "T5522C", + "G5523A", + "T5554A", + "G5558T", + "G5559A", + "G5562C", + "T5563G", + "A5564T", + "C5568G", + "C5569A", + "C5572T", + "T5579A", + "C5581A", + "T5582C", + "A5585G", + "A5586G", + "G5587T", + "G5588A", + "T5589G", + "C5591T", + "G5592A", + "G5610A", + "T5611C", + "G5621A", + "A5624C", + "A5630C", + "C5633T", + "G5639C", + "G5648A", + "C5657T", + "G5660A", + "C5666T", + "C5669T", + "G5687C", + "C5714T", + "T5726A", + "A5744G", + "G5762C", + "G5765C", + "C5766T", + "G5778A", + "G5780T", + "T5796C", + "G5801A", + "A5830C", + "A5840G", + "A5841C", + "A5843G", + "A5846G", + "A5855G", + "C5867T", + "C5870A", + "G5876T", + "C5882T", + "G5897A", + "A5900G", + "G5909A", + "G5925C", + "C5929T", + "C5933G", + "A5939G", + "T5942G", + "G5945A", + "T5963C", + "A5967C", + "A5968G", + "A5969T", + "A5978G", + "G5981A", + "T5984C", + "C5990T", + "C5996T", + "C5999T", + "A6026T", + "A6027T", + "T6032A", + "G6055A", + "G6057T", + "G6059C", + "G6086A", + "A6101T", + "G6113T", + "C6116T", + "A6123G", + "A6128G", + "C6134T", + "G6146A", + "G6155A", + "A6164G", + "T6167G", + "C6170T", + "G6176A", + "C6185T", + "T6204C", + "G6206T", + "C6207A", + "T6209G", + "T6215C", + "A6224G", + "G6228T", + "T6234C", + "A6239T", + "C6245T", + "G6260A", + "G6263A", + "A6266G", + "T6269A", + "T6272C", + "G6275A", + "C6278T", + "A6281T", + "C6282T", + "A6308T", + "A6311G", + "G6350C", + "T6351C", + "G6353T", + "T6356C", + "C6359T", + "T6362A", + "G6374T", + "T6392C", + "C6398T", + "T6401C", + "G6416C", + "C6422T", + "A6428T", + "T6446A", + "A6449T", + "T6455C", + "T6473A", + "G6488T", + "A6491G", + "T6500A", + "G6524A", + "A6527G", + "G6554T", + "T6557C", + "A6572G", + "T6578C", + "G6587T", + "A6593G", + "C6599A", + "T6608A", + "A6611G", + "A6614G", + "T6617C", + "G6629A", + "A6650G", + "G6662A", + "A6683T", + "T6692C", + "A6696C", + "G6698C", + "A6701G", + "T6704C", + "A6710G", + "C6711T", + "G6716T", + "T6728C", + "A6731G", + "G6734A", + "T6761C", + "T6767C", + "T6770C", + "T6779C", + "C6783G", + "C6784T", + "T6791C", + "G6800A", + "G6803A", + "G6806A", + "G6836A", + "G6845A", + "G6857C", + "G6863A", + "A6875G", + "A6881T", + "C6890T", + "C6897T", + "T6900C", + "G6926A", + "A6929G", + "A6932T", + "A6935C", + "C6938T", + "A6939G", + "T6941G", + "G6947A", + "A6962G", + "T6989C", + "C6992T", + "C6998T", + "C7004A", + "G7007A", + "C7022T", + "C7034T", + "C7040A", + "A7046C", + "G7052A", + "T7055C", + "C7059A", + "G7061A", + "C7062T", + "C7067A", + "A7068C", + "A7073T", + "T7079C", + "G7080T", + "C7091T", + "C7100T", + "C7103T", + "C7109A", + "G7124A", + "C7127T", + "C7131T", + "C7139T", + "C7148T", + "A7187T", + "C7193T", + "G7199A", + "A7208T", + "G7223A", + "T7235C", + "A7256G", + "T7259C", + "G7265A", + "T7268G", + "A7274G", + "C7275T", + "A7283G", + "A7286G", + "T7289C", + "C7293T", + "T7295G", + "A7298T", + "A7304G", + "C7305T", + "C7313T", + "C7331T", + "C7340T", + "C7341A", + "T7352G", + "T7359A", + "A7364T", + "C7365A", + "G7367A", + "C7374A", + "G7379C", + "C7388T", + "C7390A", + "A7391G", + "G7397A", + "G7409T", + "G7412A", + "C7416A", + "T7421C", + "G7427A", + "A7430C", + "C7433T", + "T7436A", + "C7439G", + "C7463A", + "T7477C", + "T7478C", + "G7479T", + "G7482T", + "C7484T", + "A7490G", + "C7491T", + "A7492G", + "A7525G", + "C7560A", + "C7601A", + "C7602G", + "T7605A", + "G7615A", + "G7621A", + "T7627C", + "C7630T", + "A7633T", + "G7636T", + "A7648G", + "C7649T", + "C7661T", + "G7666T", + "C7670A", + "G7681A", + "C7702T", + "G7705T", + "G7708T", + "C7711T", + "G7717A", + "C7720A", + "C7721A", + "G7723A", + "A7725G", + "C7728A", + "G7729T", + "G7732A", + "A7735T", + "G7741A", + "A7755G", + "A7760C", + "A7761G", + "G7762T", + "A7764G", + "G7766A", + "T7768C", + "T7780C", + "T7783G", + "T7786G", + "G7788C", + "G7789C", + "T7792C", + "T7798C", + "G7799A", + "G7800A", + "G7801T", + "A7802G", + "A7803G", + "A7805C", + "A7809G", + "G7810A", + "A7812G", + "T7813C", + "A7815G", + "A7816T", + "C7817A", + "G7821A", + "A7823G", + "A7824C", + "G7825A", + "G7828A", + "A7832C", + "C7846A", + "A7850G", + "A7853G", + "A7859G", + "A7860G", + "C7861A", + "A7863C", + "A7864C", + "T7867G", + "G7868A", + "G7869A", + "C7870T", + "A7872C", + "A7874C", + "G7883T", + "G7885A", + "T7891C", + "C7900T", + "A7904C", + "A7906C", + "G7909A", + "C7910A", + "T7914C", + "T7917C", + "C7918G", + "A7924G", + "T7925C", + "G7927A", + "C7936T", + "C7945T", + "T7948G", + "T7953G", + "G7957A", + "A7963C", + "T7981C", + "C7984T", + "A7990G", + "A7993C", + "A8002G", + "A8008G", + "A8012C", + "G8020T", + "G8029A", + "T8044C", + "G8047A", + "C8050A", + "C8053A", + "C8054T", + "C8084T", + "T8101A", + "C8116T", + "A8119G", + "A8125C", + "C8128T", + "C8134T", + "C8137G", + "A8151G", + "C8155T", + "A8163G", + "A8176G", + "A8179T", + "C8182G", + "T8188C", + "A8191G", + "T8194C", + "G8209C", + "A8212G", + "A8233G", + "C8252T", + "G8254A", + "G8266C", + "G8284A", + "G8287C", + "T8293A", + "A8305G", + "T8308G", + "A8309C", + "A8311T", + "C8317G", + "C8318T", + "G8320A", + "C8323A", + "G8332T", + "A8343G", + "A8382C", + "T8389C", + "T8395A", + "C8398T", + "C8411T", + "T8419C", + "G8420A", + "C8424G", + "A8431G", + "A8437G", + "C8441T", + "A8443C", + "A8446T", + "A8447C", + "C8452T", + "G8473C", + "C8483T", + "G8494A", + "C8512T", + "G8519T", + "A8520T", + "G8524A", + "A8530G", + "G8531T", + "A8542T", + "G8554A", + "G8560A", + "G8569A", + "G8572A", + "G8575A", + "C8576T", + "C8581T", + "C8590T", + "A8596T", + "G8601C", + "A8616G", + "A8621T", + "G8626A", + "C8632A", + "A8674C", + "C8680T", + "T8686C", + "G8716C", + "T8726C", + "G8728A", + "C8732T", + "C8737A", + "A8740C", + "G8744T", + "C8770T", + "A8782G", + "T8785A", + "A8797T", + "C8798T", + "A8800G", + "T8803C", + "T8809C", + "A8812C", + "C8815A", + "A8824C", + "C8836T", + "C8845T", + "G8848A", + "T8854C", + "C8861T", + "C8863A", + "A8866G", + "T8869A", + "C8875T", + "T8878C", + "G8879C", + "A8881T", + "A8891G", + "A8902G", + "T8914G", + "T8915A", + "C8916G", + "C8917T", + "C8926T", + "G8938C", + "G8950C", + "T8959G", + "T8964C", + "G8965T", + "C8968A", + "C8975T", + "C8989T", + "A8995G", + "A9004C", + "C9010A", + "C9019T", + "C9031T", + "T9034C", + "A9037T", + "C9038A", + "A9039T", + "T9049A", + "C9058A", + "C9067T", + "C9068A", + "C9073A", + "A9076G", + "A9082G", + "G9085T", + "A9094C", + "C9103A", + "A9113T", + "G9114C", + "T9115A", + "G9116T", + "T9130C", + "G9142T", + "C9144T", + "G9160C", + "A9181G", + "T9185A", + "C9193G", + "A9194G", + "A9201G", + "G9202T", + "C9204A", + "A9208G", + "G9211C", + "C9214T", + "A9216G", + "C9223T", + "A9226C", + "C9234G", + "A9235G", + "C9241T", + "G9244C", + "C9250T", + "G9259A", + "A9260T", + "T9262C", + "G9263A", + "A9264C", + "C9265A", + "T9280C", + "C9283A", + "G9292A", + "A9296C", + "A9297G", + "A9298T", + "A9301G", + "A9304T", + "A9307G", + "G9313T", + "C9314T", + "A9319G", + "G9328T", + "C9337T", + "A9349T", + "G9355C", + "C9361T", + "G9367T", + "A9370G", + "G9373T", + "C9376T", + "G9382A", + "G9388C", + "G9391T", + "T9394G", + "T9396A", + "C9403T", + "A9406G", + "G9412A", + "G9424T", + "C9427T", + "C9439T", + "C9451T", + "C9455A", + "C9457A", + "T9466A", + "A9472T", + "A9477G", + "C9487T", + "C9493T", + "T9499G", + "T9521A", + "G9524A", + "T9538C", + "A9544G", + "T9546A", + "C9559T", + "G9568A", + "T9575C", + "C9577G", + "A9583C", + "G9586A", + "A9592G", + "A9595G", + "A9598C", + "A9601G", + "C9604T", + "A9607T", + "C9614T", + "G9619T", + "G9626T", + "A9629G", + "C9643T", + "C9646T", + "A9647C", + "C9652T", + "C9661G", + "G9664A", + "A9665T", + "G9668A", + "T9674G", + "C9685T", + "C9687T", + "G9689T", + "A9691G", + "A9697G", + "C9699T", + "G9715T", + "G9727A", + "C9733T", + "C9740A", + "G9748T", + "G9779A", + "C9781A", + "C9782A", + "T9793G", + "C9796T", + "C9797T", + "G9800A", + "A9802C", + "C9806T", + "C9811G", + "C9814G", + "G9815A", + "A9821T", + "G9824A", + "C9825T", + "A9827T", + "G9830A", + "A9832G", + "G9833A", + "C9838T", + "A9839T", + "C9840T", + "A9848G", + "C9851T", + "G9854A", + "A9855G", + "C9856T", + "C9857A", + "A9858C", + "C9860T", + "A9866G", + "A9867G", + "C9868T", + "C9869T", + "C9892T", + "A9894G", + "G9898A", + "C9899T", + "T9900A", + "C9904T", + "T9907C", + "C9908T", + "C9915T", + "A9916G", + "T9918C", + "A9920G", + "G9923A", + "A9929T", + "C9930A", + "A9932G", + "G9933C", + "T9939A", + "A9942C", + "A9943T", + "G9945A", + "G9951C", + "G9954A", + "G9956T", + "G9959C", + "T9960C", + "C9963G", + "T9965A", + "T9969G", + "T9972A", + "C9973T", + "T9975C", + "A9976C", + "G9980A", + "G9981A", + "C9982A", + "C9984T", + "G9986A", + "C9987G", + "G9989A", + "C9991A", + "C9993T", + "C9994A", + "G9996A", + "T10001C", + "G10006T", + "C10007T", + "C10009A", + "A10013T", + "C10014A", + "G10018T", + "A10019C", + "C10023T", + "A10025G", + "C10028A", + "G10030C", + "G10033C", + "G10036T", + "A10037G", + "C10039T", + "C10040T", + "G10042A", + "A10046G", + "C10048T", + "A10052C", + "A10054G", + "C10057G", + "G10062A", + "A10063G", + "G10069A", + "C10072G", + "G10073A", + "T10092C", + "C10095T", + "C10096T", + "A10100G", + "A10103C", + "A10104T", + "A10105C", + "G10106A", + "T10107C", + "C10108A", + "A10109G", + "A10110G", + "C10112T", + "T10116C", + "T10117A", + "C10118T", + "C10119G", + "A10123C", + "C10124T", + "T10125C", + "A10127C", + "T10131C", + "G10133A", + "G10135C", + "T10136G", + "A10137G", + "A10139G", + "T10140C", + "T10141G", + "A10142G", + "C10143T", + "A10144G", + "G10146A", + "C10148T", + "A10149T", + "T10151A", + "C10153A", + "A10154G", + "A10157G", + "C10158G", + "A10159C", + "A10162T", + "C10163T", + "T10165G", + "G10175T", + "A10178T", + "A10182C", + "A10183C", + "T10184C", + "G10185A", + "C10189G", + "G10191A", + "C10194A", + "G10195T", + "A10197C", + "T10202G", + "C10204G", + "A10205G", + "T10207C", + "G10208T", + "C10209G", + "C10213G", + "A10217G", + "C10220A", + "A10227G", + "C10229T", + "A10230G", + "T10232A", + "A10235C", + "G10238A", + "C10240T", + "T10242C", + "C10245G", + "A10246G", + "G10247T", + "G10248T", + "G10249C", + "A10254T", + "C10255T", + "C10256G", + "T10260A", + "T10263G", + "G10266C", + "G10274A", + "C10275G", + "A10276T", + "T10277C", + "A10278C", + "T10280C", + "C10285G", + "T10286G", + "G10287A", + "C10288T", + "A10290T", + "G10295A", + "G10297A", + "A10298T", + "A10299G", + "A10301T", + "C10304T", + "A10305G", + "C10344T", + "T10348G", + "G10349C", + "G10355A", + "C10362G", + "T10364A", + "A10365G", + "A10367C", + "A10369T", + "G10370A", + "C10371G", + "A10372T", + "C10373T", + "A10374G", + "C10375T", + "C10377A", + "G10379C", + "C10381T", + "T10382C", + "T10386C", + "C10388T", + "A10389G", + "G10390C", + "C10392T", + "T10398A", + "G10399C", + "C10402T", + "A10403C", + "A10405T", + "T10408G", + "G10412A", + "G10413A", + "G10415A", + "A10416G", + "A10417G", + "C10418G", + "A10419G", + "T10421C", + "C10423A", + "A10424G", + "C10425G", + "G10444C", + "A10445G", + "G10448A", + "G10449A", + "A10452G", + "A10453G", + "A10454C", + "C10457G", + "T10459A", + "G10460A", + "T10461C", + "C10465T", + "A10470C", + "C10471T", + "G10472C", + "G10473C", + "G10475T", + "A10480G", + "G10483A", + "G10486A", + "C10488G", + "G10491T", + "C10493T", + "T10497C", + "C10500T", + "C10501A", + "A10526T", + "A10528G", + "A10531G", + "A10536G", + "G10537C", + "A10539G", + "C10542G", + "C10543T", + "G10544A", + "G10545A", + "A10548T", + "T10553C", + "A10554C", + "A10556C", + "T10558C", + "T10559C", + "A10560G", + "G10562A", + "T10565G", + "T10608A", + "T10609C", + "C10610T", + "A10611G", + "C10616T", + "A10618C", + "A10621G", + "A10622G", + "C10623A", + "T10625G", + "C10627A", + "A10628G", + "G10629T", + "C10630G", + "C10631T", + "C10632G", + "A10635C", + "C10636T", + "C10637T", + "T10642C", + "A10645G", + "A10646G", + "A10649G", + "A10652T", + "T10654A", + "C10655T", + "G10658T", + "T10659G", + "A10660G", + "C10661G", + "A10667T", + "G10668C", + "A10669G", + "C10670T", + "A10673G", + "A10675T", + "G10676T", + "C10677T", + "G10679A", + "G10680T", + "A10681G", + "G10691A", + "C10695T", + "G10696T", + "A10700T", + "A10704T", + "G10705T", + "A10708G", + "C10709T", + "T10719C", + "G10721C", + "A10722G", + "C10724T", + "A10726T", + "T10727C", + "G10728A", + "G10729C", + "G10732A", + "A10734G", + "A10735C", + "G10736A", + "C10738T", + "A10741G", + "C10743T", + "T10768A", + "T10769C", + "T10770A", + "G10773A", + "G10774A", + "T10775C", + "G10800A", + "A10801C", + "G10802A", + "T10804C", + "A10806G", + "A10807T", + "A10808G", + "C10810A", + "T10811C", + "G10812A", + "G10814C", + "C10815T", + "T10818C", + "G10820A", + "T10859C", + "T10861C", + "C10863T", + "G10868T", + "T10869C", + "C10872G", + "A10873T", + "A10875G", + "A10877G", + "C10878G", + "A10879G", + "C10880A", + "C10881G", + "G10882A", + "G10888C", + "T10889C", + "C10890T", + "A10891G", + "A10892G", + "A10893G", + "C10894T", + "C10903T", + "T10908C", + "T10909A", + "A10911G", + "G10913C", + "T10920G", + "A10921G", + "T10922C", + "T10925C", + "C10926A", + "C10929T", + "G10937T", + "C10939T", + "C11010T", + "T11014G", + "T11031C", + "C11036G", + "T11037G", + "A11038T", + "C11041G", + "G11042T", + "A11044G", + "A11046C", + "T11051C", + "C11052T", + "G11053A", + "C11054T", + "G11056C", + "C11063G", + "A11064T", + "T11065G", + "G11132C", + "G11135C", + "G11139C", + "T11140C", + "C11145T", + "C11147A", + "C11148T", + "A11150C", + "A11151G", + "A11152G", + "G11153C", + "A11157G", + "A11197G", + "C11199T", + "T11200C", + "G11204T", + "T11205G", + "C11206T", + "T11209G", + "A11213G", + "A11278G", + "T11279C", + "T11280C", + "A11285C", + "A11288G", + "T11289C", + "T11290G", + "T11292C", + "A11312G", + "A11313G", + "A11318C", + "A11320C", + "C11321T", + "T11323A", + "T11326A", + "T11327A", + "A11328G", + "A11330C", + "A11332C", + "A11334T", + "G11335A", + "A11341C", + "T11342A", + "T11365A", + "G11370T", + "T11374A", + "T11375C", + "G11376A", + "G11377C", + "C11378A", + "C11382T", + "G11384A" + ], + "6k": [ + "E1K", + "T3L", + "S6G", + "D8S", + "H9T", + "L10F", + "N12G", + "H13Y", + "Q21R", + "L23*", + "A28V", + "L29P", + "I30V", + "V31M", + "T33Y", + "R34A", + "L36H", + "K37T", + "C38Y", + "C40S", + "C41Y", + "V42L", + "V43P", + "P44R", + "F45I", + "L46*", + "V47D", + "L48P", + "G50K", + "A51V", + "A52R", + "G53R", + "A54V", + "G55D" + ], + "CP": [ + "P14S", + "F15Y", + "P30S", + "N55S", + "T56N", + "K65R", + "K67R", + "K68R", + "A69T", + "H75Q", + "R76T", + "G80N", + "K81G", + "K82Q", + "K83R", + "N84S", + "K85S", + "Q86K", + "G87E", + "K88A", + "K91Q", + "T97A", + "T98A", + "N100G", + "Q101P", + "N102K", + "G103N", + "K104T", + "K105Q", + "A108S", + "M118T", + "V119A", + "L131R", + "M151L", + "Q197R", + "N201S", + "K261R", + "Q274P" + ], + "E1": [ + "F1L", + "E2D", + "H3*", + "T5Y", + "M7L", + "P8L", + "N9D", + "Q10N", + "I13V", + "P14S", + "N16D", + "I18L", + "R21K", + "Y24*", + "A25T", + "I31T", + "T32I", + "T34A", + "K35L", + "V36T", + "K37G", + "L38F", + "I39T", + "P40C", + "L42S", + "N43H", + "L44P", + "E45N", + "Y46G", + "I47A", + "T48V", + "C49Y", + "H50F", + "Y51K", + "K52E", + "T53G", + "A59S", + "I60F", + "K61T", + "C62H", + "C63W", + "G64E", + "T65N", + "Q66P", + "C68G", + "T69A", + "A70*", + "R73G", + "P74T", + "E76G", + "Q77W", + "C78S", + "K79Q", + "V80I", + "F81S", + "T82R", + "G83F", + "Y85F", + "P86A", + "F87Y", + "M88R", + "W89S", + "A92S", + "Y93P", + "C94R", + "F95L", + "C96D", + "D97V", + "E99K", + "N100C", + "T101S", + "Q102W", + "A115V", + "D117H", + "A119T", + "A121G", + "Y122S", + "K123H", + "A124S", + "H125C", + "T126K", + "A127P", + "S128P", + "V129A", + "Q130C", + "A131V", + "L133H", + "I135L", + "G138K", + "E139R", + "Q140G", + "S141P", + "T142G", + "N149D", + "G150K", + "E151G", + "T152P", + "P153A", + "V154T", + "N157T", + "G158P", + "V159L", + "M162I", + "A163G", + "G164V", + "P165S", + "L166P", + "S167L", + "K176*", + "I177M", + "Q179R", + "Y180C", + "A181G", + "G182K", + "E183V", + "Y185P", + "N186H", + "Y187R", + "D188N", + "F189V", + "I203N", + "Q204*", + "R206C", + "T208D", + "S209A", + "S210V", + "P211C", + "D212A", + "N216D", + "T217A", + "N218*", + "L219F", + "V220W", + "L221V", + "R223S", + "P224S", + "K225D", + "A226F", + "G227M", + "V231M", + "P232L", + "T234S", + "Q235L", + "P237S", + "F240S", + "E241R", + "Q242Y", + "W243H", + "K245S", + "D246N", + "P248L", + "F257H", + "G258E", + "C259R", + "R267H", + "A268T", + "E269G", + "N270E", + "C271H", + "A272L", + "V273A", + "G274R", + "F287L", + "T288I", + "V290S", + "S291C", + "D292G", + "T293G", + "P294R", + "S297L", + "N298G", + "L303P", + "N304S", + "E305Q", + "V307G", + "Y308H", + "S309Q", + "S310L", + "G313C", + "A337V", + "V344A", + "L346G", + "E348*", + "Q349P", + "S351L", + "L352F", + "H355V", + "G378R", + "D379H", + "C380S", + "P382L", + "P383I", + "K384R", + "D385H", + "H386R", + "A400V", + "V402C", + "T405A", + "L427P", + "T429P", + "I430A", + "V431A", + "N438G", + "K440H", + "H441*", + "N442K" + ], + "E2": [ + "R13T", + "K18R", + "T20S", + "P57S", + "V61L", + "A106P", + "I110V", + "D117E", + "V134A", + "H149Q", + "Q159M", + "L169M", + "A185S", + "T194M", + "E199D", + "S208T", + "I211V", + "K213S", + "A214E", + "N218S", + "A224G", + "T233S", + "D234T", + "K245R", + "N277K", + "F278Y", + "E303D", + "E305G", + "S320T", + "V321I", + "F328Y", + "F338L", + "V355L", + "I356V", + "T368S", + "V369I", + "L371V", + "A375V", + "A376S", + "A379V", + "A406T", + "Q407K", + "F410L", + "A413T", + "C416W", + "C417W", + "A418T", + "T420S", + "A421M", + "R422W", + "A423T" + ], + "E3": [ + "V12I", + "T13S", + "P19S", + "M21L", + "E29D", + "E45L", + "A49S", + "R52S" + ], + "nsP1": [ + "K102R", + "D106E", + "D113E", + "T124S", + "D127N", + "E131D", + "T132S", + "I133M", + "Y143F", + "V149I", + "I176V", + "N238S", + "A305S", + "P444Q", + "T459S", + "E477N", + "P479T", + "L481I", + "Q488H", + "E495D", + "D525E" + ], + "nsP2": [ + "T16K", + "I51V", + "L85M", + "L146Q", + "I230T", + "P245L", + "D336N", + "L366P", + "I375V", + "P404S", + "I431V", + "K437R", + "L461M", + "T467I", + "D468N", + "D492N", + "V521T", + "K560S", + "A567V", + "R568K", + "R575K", + "T579A", + "T589N", + "S596V", + "P599T", + "P613V", + "E616Q", + "H617Q", + "V736I", + "A743T", + "K767R" + ], + "nsP3": [ + "A15S", + "S17T", + "G60N", + "K83R", + "S117G", + "L125V", + "T150M", + "V162A", + "E169D", + "I173S", + "T198V", + "N227K", + "A228E", + "I235V", + "T303A", + "K332A", + "P333T", + "A334L", + "E337Q", + "E338K", + "A344P", + "D346G", + "E347A", + "S348W", + "E350G", + "P353A", + "E354G", + "T355A", + "T356A", + "A357T", + "R358S", + "I359*", + "N360I", + "D362A", + "P366S", + "P369R", + "E370G", + "A373S", + "L374R", + "M389R", + "C390*", + "Q392R", + "Q394*", + "A402M", + "A406T", + "I408M", + "K410E", + "I413V", + "I426V", + "L430S", + "G432E", + "T436S", + "S437D", + "T438A", + "K445*", + "N447D", + "F448R", + "M449*", + "R450T", + "S451N", + "L452S", + "E453N", + "F454I", + "M455A", + "V456A", + "P458A", + "V459T", + "T460S", + "A461P", + "P462T", + "R463S", + "V465A", + "F466V", + "G467V", + "P468S", + "P470A", + "P472S", + "K473R", + "H475N", + "T476S", + "P479S", + "S487G", + "R489G", + "S491G", + "L492S", + "S494H", + "N495T", + "P496T", + "P497S", + "G498S", + "L508H", + "E509D", + "A510T", + "V511R", + "P513E", + "S514F", + "T517N", + "R519V", + "S520A", + "G521S", + "V527T" + ], + "nsP4": [ + "V26I", + "D43A", + "I47L", + "V75L", + "T76I", + "I80M", + "K89R", + "S109C", + "R118K", + "V119F", + "I141V", + "A176S", + "E179D", + "E238D", + "E242D", + "P361V", + "I413V", + "N456H", + "A460S", + "H550Q", + "S553T", + "A563E", + "I592T", + "A593S", + "A594S", + "H597C" + ] + }, + "labels": { + "aa": "6k: E1K, T3L, S6G, D8S, H9T, L10F, N12G, H13Y, Q21R, L23*, A28V, L29P, I30V, V31M, T33Y, R34A, L36H, K37T, C38Y, C40S, C41Y, V42L, V43P, P44R, F45I, L46*, V47D, L48P, G50K, A51V, A52R, G53R, A54V, G55D; CP: P14S, F15Y, P30S, N55S, T56N, K65R, K67R, K68R, A69T, H75Q, R76T, G80N, K81G, K82Q, K83R, N84S, K85S, Q86K, G87E, K88A, K91Q, T97A, T98A, N100G, Q101P, N102K, G103N, K104T, K105Q, A108S, M118T, V119A, L131R, M151L, Q197R, N201S, K261R, Q274P; E1: F1L, E2D, H3*, T5Y, M7L, P8L, N9D, Q10N, I13V, P14S, N16D, I18L, R21K, Y24*, A25T, I31T, T32I, T34A, K35L, V36T, K37G, L38F, I39T, P40C, L42S, N43H, L44P, E45N, Y46G, I47A, T48V, C49Y, H50F, Y51K, K52E, T53G, A59S, I60F, K61T, C62H, C63W, G64E, T65N, Q66P, C68G, T69A, A70*, R73G, P74T, E76G, Q77W, C78S, K79Q, V80I, F81S, T82R, G83F, Y85F, P86A, F87Y, M88R, W89S, A92S, Y93P, C94R, F95L, C96D, D97V, E99K, N100C, T101S, Q102W, A115V, D117H, A119T, A121G, Y122S, K123H, A124S, H125C, T126K, A127P, S128P, V129A, Q130C, A131V, L133H, I135L, G138K, E139R, Q140G, S141P, T142G, N149D, G150K, E151G, T152P, P153A, V154T, N157T, G158P, V159L, M162I, A163G, G164V, P165S, L166P, S167L, K176*, I177M, Q179R, Y180C, A181G, G182K, E183V, Y185P, N186H, Y187R, D188N, F189V, I203N, Q204*, R206C, T208D, S209A, S210V, P211C, D212A, N216D, T217A, N218*, L219F, V220W, L221V, R223S, P224S, K225D, A226F, G227M, V231M, P232L, T234S, Q235L, P237S, F240S, E241R, Q242Y, W243H, K245S, D246N, P248L, F257H, G258E, C259R, R267H, A268T, E269G, N270E, C271H, A272L, V273A, G274R, F287L, T288I, V290S, S291C, D292G, T293G, P294R, S297L, N298G, L303P, N304S, E305Q, V307G, Y308H, S309Q, S310L, G313C, A337V, V344A, L346G, E348*, Q349P, S351L, L352F, H355V, G378R, D379H, C380S, P382L, P383I, K384R, D385H, H386R, A400V, V402C, T405A, L427P, T429P, I430A, V431A, N438G, K440H, H441*, N442K; E2: R13T, K18R, T20S, P57S, V61L, A106P, I110V, D117E, V134A, H149Q, Q159M, L169M, A185S, T194M, E199D, S208T, I211V, K213S, A214E, N218S, A224G, T233S, D234T, K245R, N277K, F278Y, E303D, E305G, S320T, V321I, F328Y, F338L, V355L, I356V, T368S, V369I, L371V, A375V, A376S, A379V, A406T, Q407K, F410L, A413T, C416W, C417W, A418T, T420S, A421M, R422W, A423T; E3: V12I, T13S, P19S, M21L, E29D, E45L, A49S, R52S; nsP1: K102R, D106E, D113E, T124S, D127N, E131D, T132S, I133M, Y143F, V149I, I176V, N238S, A305S, P444Q, T459S, E477N, P479T, L481I, Q488H, E495D, D525E; nsP2: T16K, I51V, L85M, L146Q, I230T, P245L, D336N, L366P, I375V, P404S, I431V, K437R, L461M, T467I, D468N, D492N, V521T, K560S, A567V, R568K, R575K, T579A, T589N, S596V, P599T, P613V, E616Q, H617Q, V736I, A743T, K767R; nsP3: A15S, S17T, G60N, K83R, S117G, L125V, T150M, V162A, E169D, I173S, T198V, N227K, A228E, I235V, T303A, K332A, P333T, A334L, E337Q, E338K, A344P, D346G, E347A, S348W, E350G, P353A, E354G, T355A, T356A, A357T, R358S, I359*, N360I, D362A, P366S, P369R, E370G, A373S, L374R, M389R, C390*, Q392R, Q394*, A402M, A406T, I408M, K410E, I413V, I426V, L430S, G432E, T436S, S437D, T438A, K445*, N447D, F448R, M449*, R450T, S451N, L452S, E453N, F454I, M455A, V456A, P458A, V459T, T460S, A461P, P462T, R463S, V465A, F466V, G467V, P468S, P470A, P472S, K473R, H475N, T476S, P479S, S487G, R489G, S491G, L492S, S494H, N495T, P496T, P497S, G498S, L508H, E509D, A510T, V511R, P513E, S514F, T517N, R519V, S520A, G521S, V527T; nsP4: V26I, D43A, I47L, V75L, T76I, I80M, K89R, S109C, R118K, V119F, I141V, A176S, E179D, E238D, E242D, P361V, I413V, N456H, A460S, H550Q, S553T, A563E, I592T, A593S, A594S, H597C" + } + } + }, + { + "name": "NODE_0000086", + "node_attrs": { + "div": 0.8335012814141688, + "num_date": { + "value": 1980.0030352516894, + "confidence": [ + 1979.960862472905, + 1980.5684062171104 + ] + }, + "country": { + "value": "Argentina", + "confidence": { + "Argentina": 0.9999932124947686 + }, + "entropy": 0.00010499548110690893 + }, + "year": { + "value": "1980", + "confidence": { + "1980": 0.9995594417798246 + }, + "entropy": 0.00552928265645942 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999990994086 + }, + "entropy": 1.7584192993098982e-07 + }, + "place_of_collection": { + "value": "Chaco" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A32T", + "T33A", + "C35A", + "T44C", + "G74A", + "T77C", + "C80T", + "A83G", + "C107T", + "C110T", + "G113A", + "T143A", + "T146C", + "G194A", + "A209T", + "C227T", + "C228T", + "T263C", + "T266G", + "T281C", + "C326T", + "G341A", + "G344A", + "T356C", + "G359A", + "A368T", + "C377T", + "C383T", + "G389A", + "C410G", + "C416T", + "C419G", + "T422C", + "C426A", + "G428C", + "A431G", + "A441C", + "T443A", + "C455T", + "C458T", + "C464T", + "C468A", + "A470G", + "G474A", + "A475C", + "A476T", + "T500C", + "C503T", + "G509T", + "A512C", + "C518T", + "C524G", + "T533C", + "C560T", + "C566T", + "C575A", + "T593C", + "T608C", + "A614G", + "A623G", + "C626T", + "C629T", + "C635A", + "A653T", + "T665G", + "T668G", + "G677A", + "C689T", + "G701A", + "C702A", + "G704A", + "G710A", + "A711C", + "A713C", + "G719C", + "T725A", + "A729C", + "G731T", + "A739T", + "T740C", + "T741C", + "A743C", + "A749C", + "A754G", + "T758C", + "G773A", + "C776A", + "T779A", + "C785T", + "C788T", + "C791T", + "G797A", + "A806G", + "G812A", + "C821T", + "G833A", + "A863G", + "T905C", + "A926G", + "T1007G", + "C1022A", + "G1034T", + "G1040A", + "C1043T", + "A1049G", + "G1067A", + "C1080T", + "C1094A", + "A1100T", + "C1106T", + "C1116T", + "G1139T", + "C1151T", + "C1154A", + "G1166A", + "T1169C", + "T1172C", + "T1178C", + "T1187C", + "A1199T", + "T1217C", + "G1223C", + "T1229C", + "G1235A", + "G1241A", + "A1253G", + "A1260C", + "C1266T", + "G1274C", + "C1283T", + "T1287C", + "G1292A", + "G1310A", + "A1315G", + "A1331C", + "T1334C", + "G1337C", + "G1349A", + "G1358A", + "A1365G", + "C1379T", + "C1394T", + "G1400T", + "A1403T", + "A1407T", + "T1408C", + "C1415T", + "A1419G", + "G1424C", + "G1431A", + "G1432A", + "A1437C", + "C1442T", + "A1443C", + "G1445C", + "G1464C", + "A1465G", + "A1469G", + "G1472A", + "G1473C", + "A1481G", + "T1484C", + "T1489C", + "T1490A", + "G1494C", + "C1496G", + "A1499G", + "C1505A", + "A1516C", + "A1520G", + "C1526A", + "A1528T", + "G1541A", + "C1544T", + "A1545C", + "G1547C", + "G1550A", + "G1559A", + "G1565T", + "T1580C", + "C1581T", + "T1589A", + "T1595C", + "G1610C", + "C1616A", + "C1626T", + "G1628A", + "T1653A", + "A1664G", + "C1668A", + "G1670A", + "G1673A", + "T1676C", + "C1694T", + "A1695C", + "T1700G", + "G1706A", + "C1721T", + "G1725A", + "G1727T", + "A1733T", + "C1742T", + "A1748G", + "A1763C", + "T1784A", + "C1793T", + "C1796G", + "A1802T", + "C1808T", + "T1811A", + "C1814G", + "C1844T", + "G1859C", + "G1871T", + "C1877T", + "C1883T", + "G1889C", + "T1895C", + "G1898A", + "A1901G", + "C1902T", + "G1904A", + "C1916T", + "T1922C", + "G1940A", + "G1958A", + "C1967T", + "C1970A", + "C1974A", + "A1979T", + "T1985A", + "C1986T", + "G1988A", + "C1994T", + "G2013A", + "T2014C", + "G2015T", + "G2018A", + "T2024A", + "C2027T", + "C2036A", + "A2039G", + "C2046T", + "T2051C", + "A2057C", + "C2060T", + "C2075A", + "A2087C", + "G2088A", + "C2090T", + "T2091A", + "G2102A", + "A2106T", + "A2108C", + "T2111C", + "G2117A", + "T2126A", + "G2129T", + "C2132T", + "C2147T", + "G2150A", + "C2154T", + "C2162A", + "A2168G", + "C2189T", + "C2192G", + "A2213C", + "G2216T", + "C2231T", + "C2243T", + "C2262T", + "G2267A", + "C2273T", + "A2294G", + "C2300A", + "G2306C", + "C2312G", + "G2327T", + "G2330A", + "C2333T", + "C2336G", + "G2342A", + "C2357T", + "G2360A", + "A2366C", + "C2394T", + "T2420C", + "A2426T", + "G2429T", + "T2432C", + "C2433T", + "T2453C", + "T2456G", + "A2459G", + "T2462G", + "A2471G", + "G2474A", + "A2477G", + "C2501A", + "C2507T", + "C2520T", + "G2528C", + "A2555G", + "G2558A", + "T2576C", + "G2582A", + "T2588A", + "A2591T", + "C2609T", + "C2612T", + "G2618A", + "A2631C", + "A2633C", + "C2645G", + "C2648T", + "A2651T", + "A2654C", + "G2655C", + "A2656C", + "G2663A", + "G2669A", + "C2675T", + "A2679G", + "C2680T", + "C2681A", + "C2684A", + "A2685G", + "T2687C", + "C2690A", + "G2693A", + "A2697C", + "A2698G", + "G2699T", + "G2702A", + "T2714C", + "C2717T", + "T2720A", + "C2723T", + "C2726T", + "G2729A", + "C2745T", + "A2762G", + "A2771G", + "A2786G", + "A2789G", + "A2798C", + "G2801T", + "C2804A", + "T2813A", + "C2816G", + "T2840C", + "T2846C", + "C2855T", + "C2859G", + "C2861G", + "C2864T", + "G2876T", + "T2879C", + "A2882G", + "G2885A", + "G2897T", + "G2906A", + "G2912C", + "C2921G", + "C2927A", + "G2930A", + "T2942C", + "A2945G", + "G2951C", + "G2960A", + "A2969G", + "T2978C", + "C2981A", + "C2985T", + "A2993G", + "A3002G", + "A3022G", + "C3026T", + "G3035A", + "T3041C", + "G3042C", + "T3044A", + "T3047A", + "G3071A", + "C3074T", + "G3077A", + "G3107C", + "C3116G", + "T3122C", + "G3123T", + "A3124C", + "C3125T", + "G3132C", + "C3133A", + "C3146T", + "G3149A", + "G3150A", + "G3167A", + "C3170T", + "G3173A", + "C3179T", + "A3197C", + "G3206A", + "G3215T", + "A3224C", + "C3225T", + "T3236C", + "A3239C", + "T3242A", + "T3248C", + "C3257T", + "A3263G", + "G3266A", + "G3277A", + "G3278A", + "G3308A", + "C3317T", + "A3320T", + "C3321A", + "G3323T", + "C3326T", + "C3338T", + "A3339C", + "G3344A", + "A3347G", + "C3353T", + "G3365A", + "A3371G", + "G3380A", + "G3383C", + "A3389G", + "T3396C", + "G3398C", + "A3402G", + "G3404A", + "C3407T", + "C3417T", + "C3420A", + "T3425A", + "G3434C", + "G3436A", + "C3437A", + "A3440T", + "G3452C", + "G3455T", + "T3470A", + "T3476C", + "A3482G", + "C3485A", + "C3486T", + "C3488A", + "A3494T", + "G3495A", + "A3497T", + "A3507T", + "C3512T", + "T3515C", + "T3518C", + "C3521T", + "T3526C", + "G3527A", + "G3536A", + "C3542G", + "G3558A", + "G3563A", + "T3566G", + "G3569A", + "C3575T", + "T3593C", + "T3605A", + "A3608C", + "T3614G", + "G3618T", + "T3620G", + "A3627C", + "A3629G", + "C3635A", + "C3647A", + "C3650T", + "C3656A", + "G3659T", + "C3675T", + "T3677A", + "G3678A", + "G3680A", + "T3683C", + "G3684A", + "A3693C", + "G3695C", + "A3698C", + "C3700A", + "C3710T", + "T3740C", + "G3746A", + "T3749A", + "A3770G", + "G3776C", + "C3780T", + "G3788A", + "C3803T", + "C3806T", + "A3824G", + "C3833T", + "T3848C", + "T3854C", + "T3857C", + "G3866A", + "C3869T", + "G3890A", + "G3893A", + "A3894C", + "A3895G", + "A3896T", + "G3897A", + "A3899T", + "C3903A", + "A3914T", + "G3918A", + "G3920C", + "C3921T", + "A3923G", + "C3959T", + "C3962T", + "C3980T", + "T3983G", + "A3986T", + "C3992A", + "A4013G", + "G4016C", + "T4019C", + "A4022G", + "C4025T", + "G4030C", + "C4031A", + "C4037A", + "G4049A", + "G4052T", + "C4053A", + "T4064A", + "G4074A", + "A4076C", + "A4079G", + "C4091G", + "T4100C", + "G4108A", + "G4130A", + "C4139A", + "C4154T", + "G4157T", + "G4160T", + "C4170A", + "C4178T", + "G4184A", + "A4196C", + "C4200T", + "G4202A", + "A4205G", + "G4214C", + "C4226T", + "C4244G", + "A4262G", + "G4266A", + "C4277T", + "A4280G", + "G4286A", + "A4292G", + "G4295T", + "A4313G", + "C4319A", + "G4336A", + "T4349C", + "T4352C", + "C4356T", + "C4367A", + "A4370T", + "A4379G", + "C4394T", + "A4403T", + "T4404C", + "A4406T", + "C4412T", + "G4415A", + "A4421T", + "A4424T", + "C4430T", + "C4433A", + "A4436T", + "G4446A", + "G4448T", + "C4451A", + "C4454A", + "A4472G", + "G4478A", + "A4493G", + "A4496C", + "A4503C", + "G4505A", + "A4517G", + "G4523A", + "C4535A", + "T4549A", + "A4556G", + "G4571A", + "G4577A", + "G4580A", + "T4583C", + "G4586C", + "C4592T", + "C4595A", + "G4607A", + "A4610G", + "C4619T", + "A4620G", + "C4621T", + "C4625G", + "G4634A", + "C4643T", + "G4649A", + "G4673T", + "G4676C", + "A4688G", + "G4709C", + "T4712A", + "C4714T", + "T4724C", + "T4727C", + "G4733A", + "C4736T", + "G4751A", + "A4757G", + "T4778G", + "C4784T", + "T4790G", + "G4793A", + "G4796A", + "A4802G", + "A4814T", + "A4823C", + "C4824T", + "A4853G", + "C4860A", + "A4865G", + "G4874T", + "C4880T", + "A4883G", + "A4895G", + "C4901T", + "A4910C", + "C4913T", + "C4916T", + "G4925C", + "C4931T", + "T4940G", + "G4949A", + "G4952A", + "C4961T", + "T4964C", + "C4965A", + "A4966C", + "T4976G", + "C4979T", + "G4991T", + "T4994C", + "C5000T", + "C5003A", + "T5009A", + "A5012G", + "G5015A", + "C5019A", + "C5062T", + "A5063G", + "A5066C", + "G5067A", + "G5070C", + "A5072T", + "G5075A", + "C5077A", + "A5080T", + "G5081C", + "G5083T", + "G5085C", + "C5086T", + "A5093G", + "A5094C", + "A5097C", + "C5099T", + "G5119C", + "A5121G", + "G5124C", + "C5127G", + "T5129G", + "G5131A", + "C5134A", + "A5141G", + "A5142C", + "G5144C", + "C5146T", + "T5152C", + "A5153G", + "G5157C", + "A5158C", + "A5167T", + "G5168A", + "G5169A", + "A5170C", + "C5171T", + "A5172C", + "T5176C", + "A5206T", + "A5212C", + "T5215C", + "C5219T", + "G5237A", + "G5238C", + "C5239A", + "C5241G", + "A5260G", + "A5261G", + "A5267T", + "A5273T", + "T5276A", + "C5282T", + "C5285T", + "T5291A", + "T5292C", + "C5303T", + "C5309A", + "G5312A", + "G5321C", + "T5324C", + "G5325A", + "G5326T", + "A5331T", + "G5332C", + "A5334G", + "C5339T", + "C5342T", + "A5365T", + "G5366C", + "C5372A", + "G5378T", + "T5399C", + "A5400G", + "C5404T", + "T5405A", + "G5408C", + "A5409G", + "C5410T", + "T5411A", + "C5416T", + "T5417C", + "A5418G", + "A5421C", + "C5422A", + "T5427C", + "T5428C", + "T5429A", + "C5437T", + "A5438G", + "T5441G", + "T5444A", + "G5447A", + "A5448G", + "G5453T", + "A5457G", + "C5458G", + "G5461T", + "C5464T", + "G5465A", + "C5466A", + "T5493G", + "C5494T", + "T5509C", + "C5518A", + "G5519A", + "G5535A", + "A5538T", + "T5543C", + "A5546C", + "G5547A", + "G5549A", + "G5556C", + "A5557C", + "T5563C", + "A5567G", + "G5570A", + "T5571A", + "T5573C", + "C5576A", + "A5580G", + "T5582G", + "G5588T", + "T5589A", + "C5591A", + "C5597A", + "A5600G", + "T5601A", + "C5603A", + "T5606C", + "G5609A", + "C5612A", + "A5624G", + "A5630G", + "G5636A", + "C5642T", + "C5645T", + "G5651A", + "G5654A", + "G5663T", + "C5669G", + "G5678A", + "G5687A", + "C5693A", + "C5708A", + "T5720C", + "T5726C", + "A5741G", + "A5759G", + "G5777C", + "G5786A", + "A5792G", + "T5804A", + "G5805T", + "C5825T", + "G5829A", + "A5843T", + "C5844T", + "A5849G", + "T5856C", + "A5861G", + "T5863C", + "T5879C", + "C5891T", + "T5894C", + "G5909T", + "G5912A", + "A5924T", + "C5927T", + "A5937C", + "A5939T", + "A5940G", + "T5942C", + "G5945C", + "C5951A", + "G5954A", + "T5957A", + "A5962T", + "A5969G", + "A5972T", + "A5978C", + "C5996A", + "C5999A", + "T6000C", + "T6008G", + "G6009A", + "T6014C", + "T6015A", + "G6017T", + "A6023C", + "G6024T", + "T6029C", + "C6036A", + "A6038G", + "T6053G", + "A6054C", + "G6059A", + "A6062C", + "A6065G", + "A6068G", + "A6071G", + "G6080T", + "G6092A", + "A6104C", + "T6107C", + "T6110C", + "C6119G", + "A6122C", + "A6125T", + "A6128T", + "C6140T", + "T6165A", + "T6167C", + "C6185G", + "G6187A", + "C6194T", + "T6197A", + "T6200C", + "G6218A", + "G6221A", + "A6223G", + "T6233C", + "G6236A", + "C6242G", + "C6245A", + "A6246G", + "A6248G", + "C6249A", + "A6254G", + "A6257T", + "G6260C", + "G6263T", + "A6266C", + "T6272A", + "A6308G", + "C6317T", + "T6326G", + "C6342T", + "A6347C", + "G6350A", + "G6353A", + "C6359A", + "C6365A", + "G6377A", + "C6383T", + "A6391T", + "A6407G", + "G6414A", + "A6419C", + "T6434C", + "A6438C", + "T6441C", + "T6446C", + "A6461G", + "T6473C", + "A6485C", + "G6488A", + "A6494C", + "T6497G", + "T6500C", + "G6503A", + "A6509T", + "A6515C", + "G6524C", + "G6536A", + "C6539T", + "T6560A", + "T6566C", + "T6567C", + "G6584A", + "G6587A", + "A6596T", + "G6632A", + "T6641A", + "C6644A", + "T6647C", + "T6651C", + "G6653C", + "T6656A", + "C6665T", + "G6674A", + "C6677A", + "C6681A", + "A6683G", + "G6686A", + "G6689T", + "T6692G", + "C6693A", + "T6699C", + "A6713C", + "C6725G", + "A6731T", + "C6732T", + "C6773A", + "C6783T", + "G6785A", + "G6796T", + "T6797A", + "G6803T", + "G6818A", + "G6821C", + "C6824T", + "T6827C", + "C6833T", + "C6842T", + "A6851G", + "G6854A", + "G6857A", + "A6860G", + "C6869T", + "C6870T", + "T6884C", + "G6887C", + "G6896A", + "G6902A", + "A6920T", + "T6933A", + "C6938A", + "C6945T", + "C6950A", + "T6953C", + "G6959A", + "A6967G", + "A6968G", + "T6971C", + "G7001A", + "T7010C", + "A7019T", + "T7037A", + "C7040T", + "T7050C", + "G7052C", + "A7058G", + "G7064A", + "T7076G", + "T7082C", + "C7091A", + "A7112G", + "A7115G", + "C7118T", + "A7121G", + "G7124C", + "C7139G", + "C7142T", + "A7143C", + "A7151G", + "T7158C", + "A7169G", + "G7172T", + "G7190A", + "T7211C", + "C7220A", + "C7226T", + "C7229A", + "A7239T", + "G7241A", + "G7292A", + "C7310T", + "T7319C", + "G7322A", + "C7334T", + "C7337G", + "G7349C", + "C7350T", + "T7359G", + "T7361C", + "C7363A", + "A7371T", + "A7372G", + "G7376A", + "G7379A", + "C7382T", + "A7391T", + "C7395T", + "G7418T", + "G7424A", + "G7428A", + "C7433A", + "T7436C", + "G7440A", + "C7454T", + "T7460A", + "C7464T", + "C7469A", + "G7471A", + "A7473G", + "G7474A", + "T7477A", + "G7481C", + "G7496A", + "A7512G", + "C7513T", + "C7514T", + "G7541A", + "A7542C", + "C7543G", + "G7544T", + "C7549T", + "C7558T", + "C7561A", + "A7576G", + "A7584T", + "A7588T", + "A7594G", + "C7606T", + "G7615T", + "G7619C", + "T7624A", + "T7627A", + "A7633G", + "A7646C", + "C7654T", + "C7657G", + "G7672A", + "G7675C", + "G7690T", + "T7691A", + "C7693G", + "C7703T", + "C7720T", + "T7726C", + "A7727G", + "C7730A", + "C7731A", + "G7732T", + "A7737G", + "T7747G", + "T7750C", + "G7756A", + "A7757C", + "G7759C", + "A7763C", + "A7764C", + "C7771T", + "T7783C", + "C7784T", + "A7785C", + "A7787G", + "G7789A", + "T7792A", + "C7793G", + "A7794T", + "G7795C", + "G7810C", + "A7814C", + "A7818C", + "G7819A", + "G7820C", + "G7837A", + "A7843T", + "C7846T", + "C7847G", + "C7848G", + "A7849G", + "C7851A", + "C7855T", + "A7856G", + "A7857G", + "A7866C", + "G7876A", + "T7879C", + "A7882G", + "T7897A", + "A7903G", + "A7906G", + "T7933G", + "A7942G", + "T7948C", + "C7952T", + "A7964C", + "A7965G", + "A7966C", + "A7967G", + "T7981G", + "G7999A", + "T8000C", + "A8008C", + "A8011T", + "T8017C", + "G8020A", + "A8026T", + "T8032C", + "A8042G", + "G8048T", + "G8051A", + "C8054A", + "G8056C", + "C8074A", + "G8077A", + "C8083T", + "G8086A", + "C8098T", + "G8107A", + "G8109A", + "C8110T", + "C8114A", + "C8116A", + "T8122C", + "T8140C", + "G8143A", + "A8146G", + "T8158C", + "G8200A", + "A8212T", + "A8218T", + "A8233C", + "C8236T", + "C8251T", + "C8272G", + "G8275A", + "A8281C", + "G8284C", + "G8287A", + "A8290T", + "T8293G", + "C8296T", + "C8299T", + "G8302A", + "A8311G", + "G8320C", + "C8326G", + "C8329G", + "G8332A", + "T8338C", + "G8347T", + "C8353G", + "T8368G", + "G8371A", + "C8374T", + "G8380A", + "C8390T", + "A8392G", + "G8393A", + "C8408A", + "G8410A", + "T8425C", + "T8435G", + "A8446G", + "G8461A", + "A8462C", + "G8468T", + "G8479T", + "A8488G", + "G8509A", + "C8512G", + "T8515C", + "C8525T", + "G8527A", + "A8530T", + "C8532G", + "C8533A", + "G8536A", + "C8547A", + "C8551G", + "A8555T", + "A8556C", + "G8557C", + "A8563G", + "A8567C", + "C8568T", + "G8572C", + "G8575C", + "G8584A", + "A8596G", + "C8599T", + "G8601A", + "C8614A", + "A8616C", + "C8620T", + "A8621G", + "C8623A", + "A8624C", + "T8629C", + "C8638T", + "T8647G", + "C8653T", + "A8654G", + "A8656G", + "A8662T", + "G8668T", + "T8670C", + "G8671T", + "G8673T", + "C8680A", + "C8689T", + "C8692G", + "A8698G", + "G8701C", + "C8702T", + "G8716A", + "A8725C", + "A8734T", + "A8742C", + "C8752G", + "G8755A", + "A8762C", + "G8764A", + "A8771T", + "G8791A", + "C8816A", + "A8818G", + "A8821T", + "G8830C", + "T8839C", + "C8857T", + "C8860T", + "C8863T", + "C8864T", + "T8869C", + "A8872G", + "T8878G", + "A8881G", + "A8884T", + "G8885C", + "C8890A", + "A8893C", + "C8896A", + "A8897T", + "T8905C", + "G8912A", + "T8915G", + "A8920G", + "A8923G", + "C8929G", + "C8935A", + "G8938A", + "T8942C", + "T8944C", + "C8958A", + "T8959C", + "T8962A", + "C8968T", + "T8983C", + "C8989G", + "A8992C", + "G9013A", + "A9037G", + "G9040A", + "G9043A", + "A9044C", + "A9046T", + "T9052C", + "T9055C", + "C9058T", + "G9070T", + "C9073T", + "C9079G", + "G9085A", + "C9091T", + "A9094G", + "C9095T", + "G9097A", + "A9112G", + "G9114A", + "T9118G", + "G9127A", + "C9133G", + "A9139T", + "G9142A", + "G9147A", + "C9148T", + "C9175T", + "C9184A", + "G9190A", + "T9195C", + "A9198G", + "A9200C", + "A9205C", + "A9226G", + "G9233T", + "C9246T", + "A9247G", + "C9251A", + "C9261T", + "T9262G", + "G9274T", + "A9289G", + "G9292C", + "A9307C", + "C9310G", + "T9331C", + "A9351G", + "A9352T", + "A9358G", + "C9364T", + "C9371T", + "G9373A", + "A9379T", + "G9389C", + "A9392C", + "A9393G", + "C9397T", + "G9400T", + "T9402A", + "G9412T", + "C9416A", + "C9422T", + "G9424A", + "A9430G", + "C9446T", + "C9451A", + "C9454A", + "C9457T", + "C9460T", + "C9461T", + "A9469G", + "A9475T", + "G9476C", + "T9479G", + "A9480T", + "C9493G", + "T9497A", + "G9509A", + "T9510C", + "T9511C", + "A9514G", + "C9517T", + "C9523T", + "G9532C", + "A9535G", + "C9547T", + "C9556A", + "C9562T", + "T9565C", + "A9583G", + "A9607G", + "C9614A", + "G9619A", + "C9622T", + "G9626A", + "T9631A", + "T9634A", + "C9655A", + "C9661T", + "A9673G", + "A9691T", + "G9695A", + "G9700A", + "A9701T", + "T9703A", + "C9711G", + "A9712C", + "G9715A", + "T9716A", + "C9718T", + "C9721G", + "C9725A", + "T9728C", + "T9730C", + "A9736G", + "T9745C", + "G9754C", + "C9764A", + "A9775G", + "C9778T", + "T9790A", + "T9793C", + "C9797G", + "G9799A", + "G9803T", + "G9805A", + "C9806G", + "T9807C", + "C9811T", + "C9820T", + "T9823A", + "A9835G", + "A9839G", + "G9841A", + "A9847G", + "G9853C", + "C9862G", + "C9869A", + "T9871C", + "G9880A", + "A9890G", + "A9895G", + "A9902T", + "C9904A", + "G9910A", + "G9919C", + "G9925A", + "G9926C", + "A9929G", + "T9931A", + "C9935A", + "G9937C", + "C9938A", + "C9973G", + "C9987T", + "C10027T", + "C10039G", + "C10051T", + "A10054C", + "C10060T", + "G10064C", + "A10066C", + "C10075T", + "A10078T", + "A10091G", + "A10093G", + "C10101T", + "G10111A", + "A10115G", + "T10117G", + "T10120G", + "A10123G", + "G10126A", + "C10129T", + "A10144T", + "C10150T", + "A10162G", + "A10171C", + "C10174A", + "C10177T", + "C10189T", + "A10192G", + "C10194T", + "G10195A", + "G10198A", + "C10204T", + "A10210G", + "T10212C", + "T10214A", + "A10215C", + "T10216A", + "G10219A", + "C10222A", + "T10225C", + "C10240G", + "A10246C", + "T10273G", + "T10292A", + "C10303G", + "G10306A", + "A10315G", + "G10324C", + "T10326C", + "G10327A", + "G10343A", + "C10347A", + "T10348C", + "G10349A", + "T10357C", + "C10358A", + "A10359C", + "T10366C", + "A10369G", + "A10378C", + "C10381A", + "A10384T", + "T10394C", + "T10395A", + "C10411T", + "A10417T", + "A10419T", + "C10422T", + "A10432T", + "G10433A", + "G10436A", + "G10438T", + "T10456A", + "T10459C", + "A10474T", + "A10477G", + "T10481A", + "A10484G", + "C10492G", + "T10495A", + "C10523A", + "A10525G", + "A10531C", + "G10537A", + "C10543A", + "A10546C", + "G10549A", + "C10552G", + "C10564T", + "T10588C", + "A10591T", + "A10594G", + "A10597T", + "C10600T", + "A10618G", + "A10621C", + "C10624A", + "C10627T", + "C10637G", + "G10639T", + "G10651C", + "G10666A", + "A10675G", + "C10678A", + "A10682T", + "C10683T", + "G10693C", + "G10705A", + "T10717A", + "A10722C", + "G10723C", + "A10730G", + "A10731T", + "A10735G", + "A10750T", + "A10796G", + "A10798G", + "A10801G", + "T10804G", + "T10816C", + "A10822C", + "T10828A", + "C10837T", + "T10840C", + "C10846T", + "C10852T", + "C10856T", + "G10870C", + "A10873G", + "C10876T", + "G10888A", + "A10891C", + "A10893C", + "C10894G", + "A10900G", + "T10906A", + "T10909C", + "A10921T", + "G10930T", + "T10936C", + "G10957A", + "C10960T", + "T10961G", + "G10963C", + "C10966T", + "T10973C", + "C10978A", + "G10981A", + "A10987T", + "C10997T", + "G11003A", + "C11005T", + "C11015T", + "A11034G", + "T11035C", + "G11039A", + "C11041T", + "C11045G", + "T11050C", + "G11056A", + "T11059A", + "A11060T", + "G11062C", + "T11065C", + "A11079G", + "T11080C", + "G11089A", + "G11092A", + "C11095T", + "G11097C", + "G11098A", + "C11099A", + "C11107T", + "A11113C", + "A11114T", + "T11117G", + "T11119G", + "T11122G", + "A11123C", + "C11124T", + "A11125T", + "A11130G", + "G11134A", + "G11146T", + "C11170A", + "G11176A", + "T11177C", + "C11179G", + "C11184T", + "G11188A", + "A11191T", + "T11193A", + "T11200G", + "G11203A", + "A11218C", + "T11228C", + "A11233C", + "C11236T", + "C11237T", + "G11242T", + "C11254A", + "T11256C", + "A11257T", + "T11260A", + "A11266T", + "A11275C", + "T11290A", + "G11317A", + "A11319G", + "A11322G", + "T11323C", + "A11330G", + "A11332G", + "A11356G", + "T11357C", + "G11361A", + "A11363T", + "C11364T", + "C11366A", + "G11369A", + "C11407T", + "C11412T", + "A11416T", + "C11417T", + "C11418A" + ], + "6k": [ + "T3A", + "H13N", + "I20V", + "I24L", + "V32L", + "T33A", + "L35I", + "L36I", + "A52V" + ], + "CP": [ + "Y8F", + "A20P", + "S44T", + "T56A", + "P57N", + "D59G", + "K68P", + "H75S", + "R76G", + "N77K", + "Q78V", + "K83N", + "K85Q", + "Q86P", + "G87R", + "K94N", + "P96G", + "T97K", + "K99G", + "N102T", + "K135R", + "I136V", + "I161V", + "A163S", + "A164T", + "L165I", + "S183N" + ], + "E1": [ + "I13M", + "A22P", + "I31V", + "T34I", + "I39V", + "T65I", + "V71A", + "Y72T", + "S98T", + "M109T", + "A115T", + "P116H", + "D117N", + "Q120T", + "L132Q", + "E139D", + "Q140L", + "S141F", + "V145I", + "V146I", + "L161M", + "M162V", + "L213V", + "T228F", + "E241A", + "K244V", + "I266V", + "N298T", + "S321A", + "S325P", + "P333S", + "G335S", + "N345S", + "A347T", + "Q349E", + "M354F", + "N360S", + "R366T", + "L367M", + "T372S", + "Y373E", + "T375L", + "K377R", + "H390Q", + "Y393Q", + "A395V", + "F398Y", + "V419A", + "K440R", + "H441R" + ], + "E2": [ + "T2L", + "E3D", + "E4D", + "R13K", + "K18T", + "T20A", + "H28Q", + "I31V", + "V36A", + "R37L", + "D39E", + "N60T", + "M70L", + "D108H", + "M112L", + "D117N", + "S118A", + "Y127H", + "T132N", + "S184N", + "S195N", + "I211T", + "N212S", + "K213Q", + "A224S", + "A228V", + "T233M", + "D249E", + "E263G", + "V276L", + "N277R", + "F280Y", + "L285M", + "E305Q", + "Y306V", + "S312T", + "V316T", + "E323D", + "L351M", + "V355I", + "V378I", + "I380L", + "A383G", + "S385T", + "L388M", + "F389L", + "L412V", + "V414L", + "L415A" + ], + "E3": [ + "V3I", + "L8I", + "S17A", + "K26Q", + "A28S", + "E48D", + "A49G", + "P54Q", + "K57S" + ], + "nsP1": [ + "D125E", + "L128I", + "I133L", + "E144T", + "Y232F", + "N237S", + "K424R", + "I441V", + "I455S", + "T459A", + "G463K", + "D474R", + "E477Q", + "I482T", + "A484P", + "K491T", + "E495V" + ], + "nsP2": [ + "S2T", + "T16P", + "V26I", + "H109N", + "V122T", + "D129E", + "V147I", + "S148T", + "T153S", + "D336P", + "T344V", + "S346G", + "K350R", + "P404A", + "K458R", + "D465Q", + "D492S", + "A495Q", + "V501I", + "R543K", + "L558I", + "M585V", + "D592E", + "S596K", + "P613S", + "E616N", + "S620C", + "V626A", + "V637I", + "D639E", + "E653D", + "A657S", + "E670D", + "V677I", + "V679I", + "P684Q", + "K749R", + "V750I", + "L752M", + "V757I", + "S794T" + ], + "nsP3": [ + "A15T", + "R26K", + "E43D", + "L47M", + "V79M", + "R102Q", + "V139I", + "I173N", + "T197V", + "N227K", + "A228V", + "H312T", + "L330I", + "A344V", + "D346N", + "E347H", + "A349E", + "E350V", + "G351V", + "A352L", + "T355P", + "T356P", + "G363A", + "T364A", + "A365P", + "P366A", + "R367Q", + "A368E", + "T371P", + "A372V", + "L374P", + "D376P", + "E379V", + "D380T", + "T381P", + "M382T", + "Q392L", + "Q394P", + "L395S", + "A403Q", + "P404A", + "K410R", + "D420E", + "L430F", + "G432M", + "T435A", + "K445I", + "N447K", + "M449I", + "R457G", + "P458L", + "T460V", + "P462L", + "R463G", + "T464Q", + "F466P", + "A469V", + "K473E", + "T476G", + "R477L", + "A478V", + "P479T", + "S488V", + "V493A", + "P496Q", + "V502M", + "I503F", + "R505S", + "E506K", + "E509P", + "V511A", + "S514T", + "S515R", + "T517A", + "R519S", + "S520T", + "S524T", + "D554E" + ], + "nsP4": [ + "A35S", + "D43N", + "V54A", + "I80V", + "Y87F", + "V103I", + "L105I", + "A108S", + "S155T", + "S162N", + "K174R", + "I182V", + "Y230F", + "E238K", + "P361S", + "S365I", + "S411T", + "K422R", + "T513S", + "H550Y", + "S553A", + "A554E", + "N557C", + "V576I", + "V580I", + "R590K", + "S591D", + "I592N", + "T604V" + ] + }, + "labels": { + "aa": "6k: T3A, H13N, I20V, I24L, V32L, T33A, L35I, L36I, A52V; CP: Y8F, A20P, S44T, T56A, P57N, D59G, K68P, H75S, R76G, N77K, Q78V, K83N, K85Q, Q86P, G87R, K94N, P96G, T97K, K99G, N102T, K135R, I136V, I161V, A163S, A164T, L165I, S183N; E1: I13M, A22P, I31V, T34I, I39V, T65I, V71A, Y72T, S98T, M109T, A115T, P116H, D117N, Q120T, L132Q, E139D, Q140L, S141F, V145I, V146I, L161M, M162V, L213V, T228F, E241A, K244V, I266V, N298T, S321A, S325P, P333S, G335S, N345S, A347T, Q349E, M354F, N360S, R366T, L367M, T372S, Y373E, T375L, K377R, H390Q, Y393Q, A395V, F398Y, V419A, K440R, H441R; E2: T2L, E3D, E4D, R13K, K18T, T20A, H28Q, I31V, V36A, R37L, D39E, N60T, M70L, D108H, M112L, D117N, S118A, Y127H, T132N, S184N, S195N, I211T, N212S, K213Q, A224S, A228V, T233M, D249E, E263G, V276L, N277R, F280Y, L285M, E305Q, Y306V, S312T, V316T, E323D, L351M, V355I, V378I, I380L, A383G, S385T, L388M, F389L, L412V, V414L, L415A; E3: V3I, L8I, S17A, K26Q, A28S, E48D, A49G, P54Q, K57S; nsP1: D125E, L128I, I133L, E144T, Y232F, N237S, K424R, I441V, I455S, T459A, G463K, D474R, E477Q, I482T, A484P, K491T, E495V; nsP2: S2T, T16P, V26I, H109N, V122T, D129E, V147I, S148T, T153S, D336P, T344V, S346G, K350R, P404A, K458R, D465Q, D492S, A495Q, V501I, R543K, L558I, M585V, D592E, S596K, P613S, E616N, S620C, V626A, V637I, D639E, E653D, A657S, E670D, V677I, V679I, P684Q, K749R, V750I, L752M, V757I, S794T; nsP3: A15T, R26K, E43D, L47M, V79M, R102Q, V139I, I173N, T197V, N227K, A228V, H312T, L330I, A344V, D346N, E347H, A349E, E350V, G351V, A352L, T355P, T356P, G363A, T364A, A365P, P366A, R367Q, A368E, T371P, A372V, L374P, D376P, E379V, D380T, T381P, M382T, Q392L, Q394P, L395S, A403Q, P404A, K410R, D420E, L430F, G432M, T435A, K445I, N447K, M449I, R457G, P458L, T460V, P462L, R463G, T464Q, F466P, A469V, K473E, T476G, R477L, A478V, P479T, S488V, V493A, P496Q, V502M, I503F, R505S, E506K, E509P, V511A, S514T, S515R, T517A, R519S, S520T, S524T, D554E; nsP4: A35S, D43N, V54A, I80V, Y87F, V103I, L105I, A108S, S155T, S162N, K174R, I182V, Y230F, E238K, P361S, S365I, S411T, K422R, T513S, H550Y, S553A, A554E, N557C, V576I, V580I, R590K, S591D, I592N, T604V" + } + }, + "children": [ + { + "name": "AF075258.1", + "node_attrs": { + "div": 0.8335034214141688, + "num_date": { + "value": 1980.0013661202186, + "confidence": [ + 1980.0013661202186, + 1980.6173967148743 + ] + }, + "author": { + "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", + "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." + }, + "country": { + "value": "Argentina", + "confidence": { + "Argentina": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1980", + "confidence": { + "1980": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "VI_RNV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Chaco" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "MK028851.1", + "node_attrs": { + "div": 0.8346762414141687, + "num_date": { + "value": 1980.2989744806066, + "confidence": [ + 1980.0013661202186, + 1980.9986338797814 + ] + }, + "author": { + "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", + "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." + }, + "country": { + "value": "Argentina", + "confidence": { + "Argentina": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Aedes" + }, + "year": { + "value": "1980", + "confidence": { + "1980": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "VI_RNV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Barranqueras" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G48T", + "A49G", + "A51T", + "G54C", + "C57T", + "A58G", + "C59T", + "C7817A", + "G8120A", + "T8126A", + "C8576T", + "T9058A", + "T10194C" + ], + "CP": [ + "P86T", + "D187N", + "F189I" + ], + "E1": [ + "I65T" + ], + "nsP1": [ + "E2W", + "K3*", + "V4L", + "H5C" + ] + }, + "labels": { + "aa": "CP: P86T, D187N, F189I; E1: I65T; nsP1: E2W, K3*, V4L, H5C" + } + } + } + ] + } + ] + }, + { + "name": "NODE_0000082", + "node_attrs": { + "div": 0.41789199141416883, + "num_date": { + "value": 1878.9471333544013, + "confidence": [ + 1871.8201388540685, + 1883.908215137277 + ] + }, + "country": { + "value": "Brazil", + "confidence": { + "Brazil": 0.09712271268968067, + "Guyana": 0.07300144638013274, + "Peru": 0.0762044707545851, + "Venezuela": 0.07907750925588189 + }, + "entropy": 2.802019555026871 + }, + "year": { + "value": "1997", + "confidence": { + "1971": 0.02222249814527882, + "1973": 0.02208659647635569, + "1997": 0.02243800069201943, + "2017": 0.022179911737104017 + }, + "entropy": 3.8498269689109907 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999527185874928 + }, + "entropy": 0.0005181744761316204 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C377A", + "C415A", + "C518A", + "C674A", + "G677C", + "A726C", + "C1079A", + "C1221A", + "T1265G", + "A1344C", + "A1346C", + "A1391T", + "T1427G", + "A1458C", + "G1655C", + "C2026G", + "A2249C", + "G2402T", + "G2435C", + "C2544A", + "G2546T", + "A2577C", + "A2579T", + "G2592T", + "C2609G", + "A2892C", + "A2909C", + "C3108A", + "T3185A", + "A3435C", + "G3504C", + "G3527C", + "T3644A", + "T3706A", + "G3788T", + "A3952C", + "A3981T", + "A4376C", + "G4613C", + "C4736A", + "T4775G", + "C4819G", + "T4904G", + "A5261C", + "T5292G", + "A5423C", + "G5717C", + "G5862T", + "C6448A", + "A6461T", + "C6552A", + "T7082A", + "C7154A", + "A7247C", + "C7281A", + "T7361A", + "G7427C", + "C7484A", + "C7649A", + "G7676C", + "A7770C", + "A7787C", + "A7853C", + "G7885C", + "G7888T", + "T7891G", + "C8071A", + "T8117G", + "C8251A", + "C8296G", + "G8413C", + "A8459C", + "G8461C", + "C8599A", + "T8666G", + "T8768G", + "C8921A", + "T9092A", + "A9201C", + "T9346G", + "A9659T", + "A9744T", + "A9746T", + "T10002A", + "G10396C", + "G10486T", + "C10616A", + "A10645C", + "T10657G", + "T11050G", + "G11134T" + ], + "CP": [ + "P30T", + "E39Q", + "H70P", + "T98P", + "K109N", + "N110K", + "S186A" + ], + "E1": [ + "F1Y", + "L132F", + "M162I" + ], + "E2": [ + "S35A", + "Y69D", + "P120T", + "S177T", + "K213T", + "T366S", + "D394V", + "T395S" + ], + "nsP1": [ + "D111E", + "T124N", + "I228L", + "D461E", + "M472L" + ], + "nsP2": [ + "T126S", + "M251I", + "L299I", + "A315S", + "Q487K", + "S596R", + "A619P", + "I686K", + "K768T", + "T778S" + ], + "nsP3": [ + "T263S", + "L421V" + ], + "nsP4": [ + "V54L", + "A249E", + "M575I" + ] + }, + "labels": { + "aa": "CP: P30T, E39Q, H70P, T98P, K109N, N110K, S186A; E1: F1Y, L132F, M162I; E2: S35A, Y69D, P120T, S177T, K213T, T366S, D394V, T395S; nsP1: D111E, T124N, I228L, D461E, M472L; nsP2: T126S, M251I, L299I, A315S, Q487K, S596R, A619P, I686K, K768T, T778S; nsP3: T263S, L421V; nsP4: V54L, A249E, M575I" + } + }, + "children": [ + { + "name": "NODE_0000083", + "node_attrs": { + "div": 0.8559117314141689, + "num_date": { + "value": 1968.0030352516894, + "confidence": [ + 1967.9885899420456, + 1968.893155904255 + ] + }, + "country": { + "value": "Guyana", + "confidence": { + "Guyana": 0.9915462551469482 + }, + "entropy": 0.07200793471792155 + }, + "year": { + "value": "1968", + "confidence": { + "1967": 0.008547360560064705, + "1968": 0.8825448866014374, + "1970": 0.004263368694412439, + "1971": 0.004208827554638012 + }, + "entropy": 0.805153950674946 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999823523151141 + }, + "entropy": 0.0002107997784955143 + }, + "place_of_collection": { + "value": "Guyana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G7A", + "G8A", + "C9T", + "G10A", + "A12G", + "G14A", + "C29A", + "A31T", + "T33C", + "A43T", + "T44C", + "G74A", + "T77C", + "A83G", + "C89T", + "A90C", + "A101G", + "G113A", + "T143C", + "T185C", + "A200G", + "G245A", + "C248G", + "C251A", + "A255C", + "T266A", + "C270A", + "C272T", + "C278T", + "T284C", + "C287T", + "T290C", + "G293A", + "T325A", + "G329A", + "A335G", + "C338G", + "G341A", + "G344A", + "G350A", + "T356C", + "G359A", + "A365C", + "A368G", + "G374A", + "A376G", + "T378C", + "G380A", + "C383T", + "A384C", + "A390C", + "G392A", + "A394C", + "C398T", + "C401T", + "A414C", + "C416G", + "C419A", + "G423T", + "A424C", + "C426T", + "G428A", + "A431G", + "G434A", + "A438T", + "C446T", + "G449T", + "A461G", + "A482G", + "G483A", + "C485T", + "G497A", + "G509A", + "C524T", + "C527T", + "A548G", + "G551T", + "A557G", + "C566T", + "A572T", + "C584T", + "C599T", + "C605T", + "C606T", + "G608A", + "T611C", + "A614C", + "A623C", + "C629T", + "C632G", + "C657T", + "G662A", + "C671T", + "G680A", + "C683T", + "C686T", + "C692T", + "T695A", + "G701A", + "C708A", + "G719A", + "T725C", + "T740C", + "A749G", + "C752G", + "T770G", + "C782T", + "C788T", + "G794A", + "A800G", + "T804C", + "A810C", + "G827A", + "T836C", + "C839T", + "C840T", + "T845C", + "C848T", + "A850C", + "C854T", + "A863G", + "T878G", + "T884A", + "T887C", + "A908G", + "G911A", + "A914T", + "T920C", + "A940C", + "A947G", + "T956G", + "C968T", + "C986T", + "G992A", + "G995C", + "C1001T", + "G1004A", + "C1022T", + "G1034A", + "C1037T", + "A1049T", + "C1076T", + "T1085G", + "C1094A", + "T1097C", + "C1103T", + "A1112G", + "A1115G", + "C1116T", + "T1124A", + "G1127A", + "C1130T", + "C1145A", + "C1154A", + "G1166A", + "C1191T", + "C1208T", + "T1217C", + "T1229A", + "A1231G", + "A1244G", + "T1247C", + "A1250G", + "A1253C", + "A1260C", + "A1262T", + "C1272T", + "C1280T", + "T1287C", + "G1298A", + "C1301T", + "G1310C", + "A1319G", + "C1322T", + "T1328C", + "A1331T", + "C1352T", + "G1358A", + "C1361G", + "A1362G", + "T1364A", + "A1365G", + "C1367A", + "C1379T", + "C1388T", + "G1397T", + "A1407G", + "T1409A", + "C1418T", + "A1421T", + "G1427A", + "G1433C", + "G1436C", + "A1443C", + "G1445A", + "C1448T", + "G1464A", + "C1466A", + "A1468C", + "G1475A", + "G1478T", + "C1479G", + "C1480T", + "T1484G", + "A1488G", + "T1493A", + "C1495A", + "G1503A", + "C1506G", + "A1507G", + "A1508C", + "C1514T", + "G1518A", + "A1520C", + "C1526T", + "A1528C", + "A1529T", + "G1538A", + "G1541A", + "G1542A", + "G1547A", + "C1553A", + "G1556A", + "G1559A", + "A1571C", + "C1572T", + "A1574G", + "A1577G", + "T1580C", + "G1584A", + "C1587G", + "T1592C", + "G1598A", + "T1607G", + "G1610C", + "C1616A", + "C1622T", + "G1628C", + "C1632T", + "G1658A", + "A1664G", + "C1667G", + "C1674T", + "T1685C", + "C1694T", + "C1696G", + "A1697C", + "G1709A", + "C1715T", + "G1725A", + "G1727A", + "T1730C", + "T1736G", + "C1746T", + "A1749C", + "G1751C", + "A1763T", + "A1764G", + "C1766G", + "C1769T", + "C1772T", + "C1775T", + "C1776G", + "G1781C", + "A1790G", + "C1793G", + "A1802T", + "C1808T", + "T1811C", + "C1815A", + "C1829T", + "A1838G", + "T1841G", + "C1844T", + "C1850A", + "G1856A", + "G1857A", + "G1859T", + "G1871C", + "C1872A", + "A1873C", + "T1874C", + "C1883T", + "C1886G", + "G1889T", + "C1892T", + "G1904C", + "C1913T", + "C1919G", + "T1922A", + "C1928T", + "A1937G", + "C1956T", + "C1964T", + "C1970G", + "A1982G", + "T1985G", + "G1988T", + "C1991T", + "T1997C", + "C2009T", + "A2012G", + "G2013A", + "T2014C", + "G2015A", + "A2025G", + "A2030C", + "C2045T", + "G2048A", + "C2054T", + "G2063A", + "T2072C", + "C2075G", + "A2087G", + "C2090T", + "T2091A", + "C2092G", + "G2096T", + "C2103A", + "A2108G", + "G2114A", + "G2117C", + "G2118A", + "T2126C", + "G2129A", + "C2132T", + "G2150A", + "C2162T", + "A2168T", + "A2171C", + "T2177C", + "T2178C", + "A2189T", + "C2192T", + "T2198G", + "C2204T", + "G2216T", + "A2219T", + "C2222T", + "G2225A", + "C2231A", + "A2240G", + "C2252G", + "A2255G", + "G2257A", + "C2261T", + "C2262T", + "G2264A", + "G2267A", + "G2270T", + "A2276T", + "G2279A", + "A2285G", + "C2288T", + "C2291T", + "A2294G", + "C2300T", + "A2303C", + "C2304A", + "G2306A", + "A2316C", + "A2317G", + "A2318C", + "A2319G", + "T2320C", + "G2321T", + "T2338A", + "C2345G", + "A2357C", + "G2360A", + "A2366G", + "T2369C", + "A2372T", + "C2375T", + "C2379T", + "A2387C", + "C2390A", + "C2394T", + "G2396A", + "T2405C", + "A2417G", + "T2420C", + "G2429A", + "T2432C", + "C2435T", + "C2436A", + "C2438G", + "G2441C", + "C2450G", + "T2456C", + "A2459G", + "T2462C", + "G2468A", + "A2471C", + "C2475T", + "A2477G", + "A2483G", + "G2489T", + "G2495A", + "C2498T", + "C2501G", + "A2525G", + "G2528A", + "T2531C", + "C2537T", + "G2552A", + "C2564T", + "T2576G", + "G2582A", + "T2588C", + "A2591G", + "A2594T", + "C2597G", + "A2600T", + "T2624C", + "A2639G", + "C2642A", + "C2650A", + "A2651G", + "A2661C", + "G2663A", + "T2666C", + "G2669A", + "T2672C", + "C2675T", + "A2678C", + "C2681A", + "C2684G", + "T2687C", + "C2690G", + "A2696T", + "T2705G", + "C2709T", + "T2714C", + "A2727C", + "G2729A", + "G2738A", + "G2744A", + "A2750G", + "T2756C", + "A2774C", + "G2780A", + "C2792G", + "G2795A", + "G2801A", + "A2807G", + "T2813C", + "T2846C", + "C2849G", + "C2855T", + "C2864T", + "G2870A", + "C2882T", + "G2894A", + "A2904C", + "G2906A", + "G2912T", + "C2927G", + "G2930T", + "G2936C", + "A2945G", + "A2948C", + "G2954C", + "C2963T", + "A2969T", + "A2970G", + "C2972A", + "A2976T", + "T2978A", + "C2981G", + "G2987A", + "A3001C", + "A3002T", + "T3011C", + "C3017T", + "T3030A", + "G3035A", + "A3036G", + "G3042A", + "T3044C", + "T3065C", + "G3077T", + "C3086T", + "G3089A", + "A3092T", + "A3095T", + "G3098C", + "C3101T", + "A3104G", + "G3110A", + "C3113A", + "C3119A", + "G3123T", + "A3124C", + "A3126T", + "C3131G", + "G3137C", + "G3140A", + "C3146T", + "G3149C", + "T3152C", + "C3154A", + "G3155A", + "T3156A", + "G3165A", + "A3166C", + "G3167T", + "A3176G", + "A3182T", + "A3191T", + "A3194G", + "C3195T", + "C3200T", + "G3212A", + "A3224G", + "G3227A", + "T3230C", + "C3243A", + "G3245A", + "T3248C", + "T3251A", + "A3254G", + "C3257T", + "A3263C", + "C3272T", + "G3277A", + "C3284T", + "A3299C", + "G3302A", + "A3305T", + "C3321A", + "G3323C", + "A3328T", + "A3332C", + "C3338G", + "A3347T", + "C3350T", + "C3351A", + "C3353G", + "G3356C", + "A3362G", + "G3380A", + "G3381A", + "G3383C", + "T3386A", + "A3389G", + "A3390C", + "T3394C", + "T3396C", + "C3401T", + "A3408T", + "C3410G", + "A3414G", + "C3417T", + "A3424C", + "T3425C", + "T3428C", + "G3434C", + "C3437G", + "G3438A", + "C3444T", + "G3452T", + "G3453A", + "T3461G", + "A3464G", + "C3465T", + "G3467A", + "T3470C", + "G3479T", + "C3486A", + "A3492T", + "C3503T", + "C3506T", + "T3518G", + "G3519A", + "C3527T", + "G3536T", + "G3539A", + "C3542T", + "T3548C", + "G3554A", + "G3563A", + "T3566C", + "G3569A", + "A3574C", + "A3576G", + "C3578G", + "C3579A", + "G3584A", + "T3590C", + "T3593C", + "T3605C", + "C3609T", + "A3610C", + "T3614C", + "C3623T", + "C3626T", + "A3627C", + "A3629C", + "T3630A", + "T3632G", + "T3641C", + "C3642T", + "C3647G", + "C3650T", + "C3656A", + "G3660C", + "A3662T", + "C3665T", + "T3671C", + "G3680C", + "T3683C", + "T3686C", + "G3692A", + "G3695A", + "A3698G", + "A3706G", + "T3713C", + "C3734T", + "T3737C", + "T3749G", + "C3773T", + "C3774T", + "G3782C", + "A3791G", + "C3797A", + "T3800C", + "A3807G", + "T3809G", + "C3812A", + "C3821T", + "A3828C", + "C3836T", + "T3845A", + "T3848A", + "T3854A", + "T3860C", + "C3861A", + "G3872A", + "C3879A", + "G3881A", + "G3890A", + "G3893T", + "G3897A", + "C3903T", + "G3905A", + "G3908A", + "A3914G", + "G3917A", + "A3923G", + "A3935T", + "G3938A", + "C3944T", + "A3947T", + "A3949G", + "T3956C", + "T3965C", + "C3968G", + "C3971T", + "G3977C", + "A3986G", + "T3987C", + "G3989A", + "C3992A", + "C4001T", + "A4002T", + "A4004G", + "A4010C", + "G4011A", + "G4012A", + "A4013C", + "C4014T", + "G4016T", + "C4025G", + "A4028G", + "C4031T", + "G4049T", + "G4052C", + "T4061C", + "G4070C", + "C4073A", + "A4079T", + "A4082G", + "C4085G", + "T4088C", + "G4089A", + "C4091T", + "C4106T", + "A4109G", + "A4112C", + "T4124A", + "A4127C", + "C4133T", + "C4139T", + "G4142A", + "A4151G", + "C4154T", + "G4160A", + "C4166T", + "G4172A", + "C4178T", + "G4184A", + "A4190T", + "A4196G", + "G4199C", + "C4200T", + "A4208G", + "G4215A", + "C4216A", + "G4220A", + "T4229A", + "T4232C", + "A4235G", + "G4238C", + "C4244T", + "T4247C", + "C4250T", + "A4256G", + "G4266A", + "G4268A", + "T4274C", + "G4283A", + "G4286C", + "A4289C", + "A4292G", + "G4301A", + "T4304C", + "A4305G", + "T4310C", + "A4314C", + "C4319G", + "C4328T", + "C4340A", + "G4343C", + "T4349C", + "G4355C", + "A4379T", + "C4382T", + "A4389C", + "C4394T", + "G4415C", + "G4418C", + "A4421T", + "A4424C", + "C4430T", + "C4433G", + "A4436C", + "T4439C", + "A4442G", + "G4448C", + "C4451T", + "A4461C", + "A4463C", + "C4466T", + "G4469A", + "G4478A", + "G4481T", + "A4484G", + "G4487C", + "A4496G", + "A4497G", + "A4499G", + "A4502C", + "A4503C", + "A4508G", + "A4511G", + "T4529C", + "C4532A", + "C4535G", + "T4541C", + "G4544T", + "G4548C", + "A4550G", + "G4551A", + "A4553C", + "A4556G", + "C4564T", + "C4569T", + "G4571A", + "A4575C", + "G4580T", + "T4583C", + "C4595G", + "G4598A", + "T4604C", + "G4607A", + "C4613T", + "C4616T", + "C4621T", + "G4622C", + "C4625G", + "G4634A", + "T4637C", + "A4643T", + "G4649A", + "G4655A", + "T4658C", + "T4664C", + "G4679A", + "A4683G", + "A4688C", + "G4691A", + "T4694A", + "G4721A", + "T4727C", + "G4733A", + "T4740C", + "G4742C", + "C4745T", + "C4766T", + "C4773A", + "G4775A", + "T4790A", + "G4793A", + "C4808A", + "A4817T", + "G4819A", + "G4826C", + "G4829T", + "C4832T", + "G4835A", + "C4838T", + "T4856A", + "A4859G", + "A4862T", + "A4865T", + "A4868G", + "A4869C", + "C4872T", + "C4880A", + "C4884A", + "C4886G", + "T4889G", + "G4892A", + "A4895G", + "T4898C", + "A4901G", + "C4913G", + "T4919G", + "C4937A", + "T4940C", + "T4943C", + "G4946A", + "T4955C", + "C4961T", + "C4965T", + "A4966G", + "C4974T", + "T4976G", + "A4982T", + "T4994A", + "T5006C", + "C5010A", + "G5015A", + "A5025C", + "A5026G", + "A5027C", + "C5077T", + "A5078T", + "G5083T", + "C5086A", + "C5089G", + "A5092C", + "A5094G", + "C5095G", + "A5099C", + "G5100C", + "T5107G", + "A5110G", + "A5112T", + "G5114C", + "G5115A", + "T5117C", + "C5122G", + "G5126A", + "C5128T", + "C5146T", + "G5148T", + "A5151G", + "A5155T", + "A5156T", + "T5159C", + "G5160A", + "A5161G", + "A5162C", + "C5164T", + "A5167T", + "G5168T", + "G5169A", + "A5170G", + "A5172T", + "C5174G", + "A5175G", + "T5176A", + "T5181A", + "T5182C", + "G5183A", + "G5186C", + "T5187G", + "C5188A", + "G5190A", + "A5191C", + "G5194A", + "C5195T", + "A5196C", + "G5200C", + "C5201G", + "C5202G", + "T5209C", + "G5213A", + "C5214T", + "T5215C", + "A5216G", + "C5219A", + "G5231A", + "G5238A", + "C5239G", + "C5242T", + "T5244G", + "C5245A", + "C5252T", + "A5253C", + "C5255A", + "T5258C", + "A5267T", + "T5270C", + "T5276C", + "C5285T", + "T5288C", + "T5293C", + "C5329T", + "A5331G", + "A5334T", + "A5336T", + "A5337G", + "G5346T", + "C5347T", + "G5351C", + "G5355A", + "T5363G", + "T5367C", + "C5372T", + "A5376C", + "T5377A", + "G5399A", + "G5406A", + "G5408C", + "G5414T", + "C5423T", + "G5424A", + "T5426C", + "T5429C", + "A5435G", + "A5438G", + "G5447T", + "A5448C", + "A5449G", + "G5453T", + "G5482A", + "C5489G", + "C5492T", + "A5498T", + "A5499G", + "T5501G", + "A5502T", + "G5503C", + "C5504A", + "A5507G", + "G5508T", + "T5563C", + "A5564G", + "A5565C", + "T5571A", + "C5572T", + "G5575A", + "C5581G", + "A5586G", + "G5587T", + "G5588A", + "C5591A", + "T5607C", + "T5611C", + "C5612A", + "T5615C", + "A5630T", + "G5636A", + "G5660A", + "G5663C", + "G5672A", + "C5693A", + "A5702G", + "C5723A", + "T5726C", + "A5738G", + "A5750C", + "A5754C", + "A5759G", + "G5762C", + "G5765T", + "G5768A", + "C5771T", + "A5774G", + "G5777C", + "G5780A", + "C5781T", + "G5786A", + "A5792G", + "G5793C", + "A5794T", + "G5801T", + "A5802G", + "T5803A", + "T5804C", + "C5806T", + "T5810C", + "C5819T", + "C5825T", + "A5828T", + "G5829A", + "T5831C", + "A5834G", + "A5837G", + "A5840G", + "A5841T", + "A5846G", + "A5849G", + "A5855G", + "T5856C", + "G5858C", + "T5862C", + "G5864T", + "C5870T", + "A5873T", + "C5875A", + "G5876A", + "C5882T", + "C5900A", + "G5905A", + "G5909A", + "A5921G", + "A5924G", + "G5925A", + "T5930C", + "A5935T", + "A5936G", + "T5942G", + "C5943T", + "A5946C", + "A5947G", + "A5948C", + "C5951T", + "G5954A", + "T5963C", + "G5970A", + "A5972C", + "A5975C", + "G5976A", + "G5977A", + "A5978C", + "G5981A", + "T5984A", + "G6002A", + "T6005C", + "T6008C", + "T6014G", + "T6015C", + "A6023C", + "G6024A", + "C6025G", + "A6026C", + "T6032G", + "G6039T", + "T6047A", + "A6048T", + "T6050C", + "G6055A", + "A6062C", + "A6071C", + "T6074C", + "T6077C", + "G6086T", + "G6089A", + "C6095T", + "A6101G", + "A6104C", + "T6110C", + "C6116T", + "A6122T", + "T6124C", + "A6125C", + "A6128C", + "G6131A", + "T6137C", + "C6140A", + "T6143C", + "G6146A", + "C6149T", + "T6158C", + "A6164T", + "T6165A", + "T6174C", + "G6176A", + "C6179T", + "A6182C", + "T6197C", + "T6204C", + "T6209C", + "C6212T", + "G6218T", + "G6228T", + "C6230A", + "T6233C", + "T6234C", + "C6242G", + "A6248T", + "C6249A", + "G6260T", + "T6269G", + "C6278T", + "T6290C", + "A6299C", + "C6305T", + "A6336C", + "A6338T", + "T6351C", + "T6356C", + "T6362G", + "G6374A", + "C6380T", + "A6389G", + "A6395C", + "T6401C", + "T6404C", + "A6407G", + "G6416C", + "A6424G", + "A6428T", + "C6431T", + "T6437C", + "G6443A", + "A6449G", + "T6464C", + "T6470C", + "T6473C", + "A6476G", + "T6477C", + "A6485G", + "A6491G", + "T6497A", + "T6500A", + "A6509C", + "A6515C", + "G6524C", + "A6525T", + "C6526G", + "G6536A", + "C6539T", + "C6542A", + "C6545T", + "G6554A", + "T6557C", + "T6560G", + "A6573C", + "A6575T", + "T6578C", + "G6584A", + "A6590G", + "A6593G", + "A6596T", + "C6599T", + "G6626T", + "G6638A", + "T6641C", + "C6644T", + "T6651C", + "G6653A", + "G6668A", + "G6674A", + "C6677A", + "A6683T", + "A6696C", + "T6699C", + "A6701G", + "G6716A", + "G6734T", + "C6740T", + "T6746G", + "C6764G", + "G6785A", + "T6788C", + "G6791A", + "A6795C", + "G6796A", + "T6797A", + "G6800T", + "G6803A", + "G6806A", + "T6809G", + "C6815A", + "G6821C", + "G6830A", + "G6836A", + "C6842T", + "A6851G", + "G6854A", + "G6857T", + "G6863T", + "C6869A", + "G6872T", + "C6878T", + "T6884A", + "G6887C", + "G6899A", + "G6905T", + "G6908A", + "A6911T", + "G6917T", + "A6920C", + "G6926T", + "A6929G", + "A6935T", + "C6938T", + "T6941C", + "G6947C", + "T6965C", + "A6974G", + "C6977G", + "A6986G", + "T6989A", + "C6998T", + "G7001T", + "C7004T", + "G7007A", + "T7010C", + "G7013A", + "C7022T", + "T7025A", + "C7034T", + "C7040G", + "G7049A", + "T7055A", + "C7059A", + "G7064T", + "C7067T", + "A7073T", + "T7076G", + "T7079C", + "A7085T", + "T7097C", + "C7100T", + "C7103T", + "C7106A", + "C7109G", + "C7118A", + "G7124T", + "C7127T", + "G7133A", + "C7142T", + "C7151T", + "A7154G", + "G7160A", + "T7181A", + "G7190T", + "C7193A", + "C7196G", + "A7208G", + "T7217C", + "C7220T", + "G7223T", + "T7235C", + "C7238T", + "G7241C", + "C7250A", + "A7253T", + "G7262C", + "G7265C", + "T7268G", + "G7277A", + "A7283G", + "C7293T", + "T7295G", + "A7298G", + "C7305T", + "T7319C", + "T7328C", + "C7338A", + "C7340A", + "A7346G", + "C7350T", + "A7351T", + "T7359G", + "C7363A", + "A7364G", + "C7365A", + "T7378C", + "G7379T", + "T7387C", + "C7390T", + "G7394A", + "G7397T", + "T7400C", + "G7409A", + "G7412A", + "A7415C", + "C7416A", + "T7421C", + "A7430G", + "C7439T", + "G7440A", + "C7442T", + "T7445A", + "A7449G", + "T7450C", + "G7451A", + "C7454T", + "A7458G", + "T7460C", + "C7464T", + "G7466A", + "C7469T", + "A7470C", + "G7472T", + "G7474A", + "T7475C", + "T7478A", + "G7482A", + "G7489A", + "A7497C", + "G7502A", + "A7512C", + "C7513A", + "C7540T", + "C7543T", + "G7544A", + "C7549A", + "C7558A", + "T7572A", + "T7585C", + "A7597T", + "A7598G", + "T7599C", + "C7603G", + "T7605A", + "C7612T", + "T7617A", + "G7619C", + "T7627C", + "C7630G", + "G7636A", + "T7641A", + "C7642T", + "T7645G", + "A7646C", + "A7648C", + "C7657A", + "C7661T", + "A7667T", + "G7672A", + "C7688A", + "G7705A", + "G7708A", + "T7726G", + "C7728G", + "G7729T", + "A7735C", + "G7738A", + "G7741C", + "A7744C", + "G7756A", + "G7762A", + "A7763C", + "A7764G", + "G7765T", + "T7768A", + "C7778G", + "A7779C", + "G7780A", + "T7783G", + "A7785C", + "T7786C", + "G7788C", + "A7791T", + "C7793A", + "G7795A", + "G7800C", + "A7802C", + "A7814G", + "A7815G", + "A7816C", + "C7817A", + "A7835C", + "A7836C", + "A7843T", + "C7844G", + "C7847G", + "C7848T", + "A7849T", + "C7851A", + "A7855C", + "A7858G", + "C7861T", + "A7865C", + "A7866C", + "T7867G", + "G7869C", + "A7872G", + "C7873T", + "G7883C", + "C7885T", + "T7897C", + "C7900A", + "A7906G", + "A7912C", + "C7918T", + "T7925C", + "G7927C", + "G7939A", + "A7942T", + "T7948G", + "G7957A", + "G7975C", + "T7978C", + "T7981C", + "C7984T", + "T7996C", + "G7999A", + "A8002G", + "C8006A", + "A8011G", + "G8020T", + "C8035T", + "C8041G", + "C8045T", + "C8050A", + "C8054T", + "C8062G", + "T8072A", + "T8080C", + "C8084T", + "G8107A", + "C8110T", + "C8116T", + "A8125G", + "C8128T", + "A8129C", + "A8130G", + "A8131T", + "G8143A", + "A8146G", + "C8155G", + "C8161T", + "C8164T", + "T8173C", + "A8179C", + "C8182T", + "T8194C", + "G8197C", + "G8209C", + "A8224C", + "G8227T", + "C8236T", + "C8239T", + "C8245A", + "C8248T", + "G8254A", + "G8266A", + "A8269G", + "C8272A", + "G8275A", + "T8278C", + "G8287A", + "T8293A", + "G8296A", + "G8302A", + "A8305T", + "T8308A", + "A8309C", + "A8311C", + "C8317A", + "C8326T", + "C8329A", + "A8337C", + "T8368C", + "G8371A", + "C8374T", + "G8383A", + "C8398T", + "A8399G", + "A8402G", + "G8404T", + "C8408T", + "C8413T", + "C8416A", + "C8422A", + "C8428T", + "A8431G", + "A8443G", + "A8446T", + "G8449A", + "A8467G", + "G8468T", + "G8473A", + "G8479T", + "A8482C", + "C8488T", + "T8491C", + "C8493A", + "C8497T", + "G8498A", + "G8509A", + "C8512T", + "T8515C", + "T8518C", + "A8520T", + "C8522T", + "G8524A", + "A8530T", + "G8531T", + "A8542G", + "A8548G", + "A8555C", + "G8560A", + "A8561C", + "A8563T", + "C8566A", + "G8575A", + "G8578C", + "G8584A", + "G8587A", + "C8590T", + "A8596G", + "A8599G", + "G8601A", + "G8602A", + "G8605C", + "C8614T", + "C8632T", + "T8635G", + "T8647C", + "C8653T", + "C8667A", + "C8677T", + "G8683A", + "C8689T", + "G8696A", + "G8701C", + "C8702A", + "A8704T", + "A8710C", + "T8726C", + "T8731C", + "A8734T", + "C8737A", + "A8741G", + "A8742G", + "A8749G", + "G8750A", + "G8755A", + "T8758G", + "A8762C", + "G8764C", + "G8768A", + "C8770T", + "A8771C", + "T8776A", + "A8782C", + "A8797T", + "A8800G", + "A8806G", + "T8809G", + "A8812C", + "C8815A", + "C8818T", + "A8821T", + "A8824C", + "G8827C", + "G8830C", + "T8833C", + "C8836T", + "G8840A", + "G8848C", + "T8851C", + "T8854C", + "C8864T", + "C8880A", + "A8884G", + "C8890A", + "A8891T", + "A8893G", + "A8902G", + "T8905C", + "G8911A", + "T8915A", + "A8923G", + "C8929A", + "G8938A", + "T8944C", + "G8945A", + "G8950T", + "C8958T", + "T8959A", + "G8965A", + "C8968G", + "A8969C", + "A8971C", + "G8977T", + "C8980T", + "T8983G", + "A8992C", + "A9001C", + "G9002A", + "A9007C", + "G9013A", + "C9019A", + "C9025T", + "C9031T", + "A9037C", + "T9055C", + "G9070C", + "C9073T", + "C9088T", + "C9091T", + "A9094T", + "A9113G", + "T9115G", + "C9129A", + "C9133T", + "G9142A", + "A9144C", + "A9145T", + "G9147A", + "C9152T", + "G9154A", + "C9163T", + "A9166C", + "A9178C", + "C9184T", + "A9187C", + "A9194G", + "A9198G", + "C9199T", + "G9202C", + "C9204T", + "C9210A", + "A9213T", + "A9226G", + "A9227C", + "A9232C", + "G9233A", + "C9234A", + "A9235C", + "C9236A", + "A9237G", + "C9241T", + "G9244C", + "A9247C", + "A9261G", + "G9268A", + "A9276T", + "C9277T", + "C9286T", + "A9301T", + "G9302T", + "A9307G", + "G9313T", + "G9316A", + "A9322T", + "G9334A", + "A9339T", + "G9346A", + "A9347T", + "G9355A", + "A9358G", + "A9370C", + "C9376G", + "C9385G", + "A9386G", + "G9388A", + "A9392T", + "T9394G", + "G9400A", + "A9406G", + "A9409G", + "C9416T", + "G9418A", + "G9424C", + "C9427T", + "A9430T", + "G9433T", + "C9439A", + "C9442T", + "T9445C", + "C9451G", + "C9455A", + "C9457A", + "C9460T", + "C9461T", + "G9463A", + "A9465G", + "T9466C", + "A9469C", + "G9476C", + "C9481T", + "T9484C", + "C9487T", + "G9490A", + "C9493T", + "T9496C", + "T9499G", + "A9502G", + "A9506G", + "C9507T", + "C9508T", + "T9511A", + "A9514G", + "T9520C", + "G9524A", + "A9529G", + "G9532A", + "A9535G", + "C9556T", + "A9569C", + "G9571A", + "A9583T", + "A9589G", + "A9595G", + "A9598T", + "A9607T", + "T9610C", + "A9613T", + "C9614A", + "C9622T", + "G9625A", + "G9626A", + "A9629G", + "T9634C", + "T9637C", + "C9640T", + "C9644T", + "C9652T", + "C9655A", + "C9661A", + "G9664C", + "A9665G", + "C9667G", + "G9676A", + "C9679T", + "T9682A", + "C9685T", + "A9694T", + "A9697C", + "C9699T", + "G9700A", + "T9703A", + "G9706C", + "G9707A", + "T9709A", + "A9712G", + "C9718A", + "A9719C", + "C9720T", + "G9724C", + "C9725T", + "T9730A", + "G9739T", + "T9745C", + "C9752T", + "G9754A", + "C9757A", + "C9764A", + "C9767T", + "A9775G", + "C9781A", + "A9783G", + "G9784C", + "T9785C", + "A9787T", + "T9790C", + "T9791A", + "T9793C", + "C9796T", + "G9803T", + "G9808T", + "A9817G", + "C9820T", + "A9821C", + "G9824A", + "G9829A", + "A9832T", + "C9838G", + "C9850T", + "G9853T", + "C9862A", + "C9868T", + "C9869A", + "C9874T", + "A9890C", + "G9901T", + "C9904A", + "T9907C", + "G9910T", + "C9913A", + "C9916T", + "C9917T", + "G9919A", + "C9922A", + "G9926A", + "G9928T", + "C9932A", + "C9935A", + "G9937C", + "G9940A", + "G9949C", + "G9956T", + "G9958T", + "A9988C", + "C10000T", + "G10012A", + "C10015A", + "A10026G", + "G10030A", + "G10036A", + "A10054C", + "C10057G", + "C10060T", + "A10063G", + "A10066C", + "A10078C", + "G10081A", + "C10084A", + "A10093C", + "C10102T", + "A10105G", + "G10106A", + "A10109C", + "G10111A", + "C10112A", + "T10120C", + "A10123C", + "C10130T", + "C10138T", + "C10147T", + "C10150T", + "C10153T", + "G10156A", + "A10159C", + "A10162G", + "C10163T", + "T10165A", + "A10171T", + "C10177G", + "A10178G", + "C10180G", + "A10183G", + "A10205T", + "C10209A", + "T10214A", + "A10215C", + "T10216C", + "A10217C", + "G10219C", + "C10229A", + "C10234T", + "G10237A", + "C10240A", + "C10243T", + "G10249T", + "C10255T", + "A10270C", + "T10273C", + "A10276C", + "C10282T", + "T10292A", + "T10294A", + "A10301T", + "C10312T", + "C10321T", + "G10324A", + "A10330G", + "A10333T", + "C10336T", + "C10345T", + "T10351C", + "A10363G", + "C10381T", + "T10382G", + "T10386C", + "C10387A", + "C10396T", + "G10399C", + "A10405T", + "T10408G", + "G10413C", + "A10417T", + "C10423A", + "C10429A", + "G10430A", + "A10432G", + "G10433A", + "C10441T", + "G10444T", + "T10456A", + "T10459C", + "A10474C", + "G10475A", + "A10479G", + "G10483A", + "T10485C", + "C10496T", + "C10501A", + "T10504A", + "C10507G", + "A10513G", + "C10516T", + "T10519C", + "A10525C", + "A10528G", + "G10534T", + "T10540C", + "C10543T", + "G10545A", + "G10549A", + "C10552G", + "T10558C", + "C10564T", + "A10570T", + "G10573A", + "A10585T", + "C10586A", + "A10587C", + "T10588C", + "A10597T", + "A10603C", + "T10609C", + "C10615T", + "C10624T", + "T10625A", + "T10633A", + "G10639A", + "T10642C", + "G10651C", + "C10661T", + "C10672G", + "G10676T", + "C10684G", + "A10685G", + "C10687T", + "T10690C", + "G10693T", + "C10699T", + "A10708C", + "A10711T", + "A10726G", + "G10732A", + "A10735G", + "A10747G", + "T10751C", + "G10756A", + "T10768A", + "C10777T", + "A10783C", + "C10784A", + "A10807G", + "C10810T", + "G10819A", + "A10822C", + "A10831G", + "A10834T", + "C10837T", + "T10840C", + "C10846T", + "C10849T", + "C10852T", + "A10873T", + "A10885G", + "A10891G", + "C10897G", + "T10906C", + "T10909A", + "T10918C", + "A10927T", + "C10933T", + "T10936C", + "C10939G", + "G10942A", + "C10945T", + "C10948T", + "A10949T", + "C10954G", + "C10960T", + "G10963A", + "G10968C", + "T10973G", + "C10978G", + "C10984T", + "T10993C", + "A10999T", + "C11005T", + "G11008T", + "C11011G", + "T11014C", + "C11015G", + "G11017T", + "A11019G", + "T11024G", + "A11026C", + "G11027A", + "T11028C", + "C11032G", + "A11038T", + "C11040T", + "A11047G", + "G11050A", + "G11053C", + "G11056C", + "T11059A", + "A11060G", + "G11062A", + "T11065C", + "T11068C", + "G11089A", + "G11092A", + "C11095T", + "A11104G", + "A11113C", + "A11116T", + "T11122G", + "T11134C", + "C11143T", + "T11149C", + "G11164C", + "A11167G", + "A11191G", + "T11200A", + "G11203A", + "C11206G", + "T11209C", + "C11215A", + "T11228A", + "A11230C", + "C11236G", + "C11237T", + "G11242C", + "G11248T", + "A11251G", + "C11254A", + "A11257G", + "A11258C", + "T11260C", + "A11261G", + "T11263A", + "A11264G", + "C11272A", + "C11273T", + "G11276A", + "C11286T", + "T11290C", + "G11293A", + "C11296T", + "T11298C", + "G11305A", + "A11312G", + "A11313G", + "A11319G", + "A11320G", + "C11321A", + "A11322G", + "T11323G", + "A11324T", + "T11326C", + "A11334C", + "G11335A", + "A11348G", + "C11353T", + "T11355A", + "A11358T", + "A11359G", + "A11362T", + "C11364A", + "C11366A", + "G11369A", + "A11379G", + "A11390T", + "C11407A", + "T11419C" + ], + "6k": [ + "H13N", + "I20L", + "V32I", + "L35I", + "V42F" + ], + "CP": [ + "F4Y", + "M13A", + "F15Y", + "F19Y", + "A20P", + "F27Y", + "M36L", + "D55E", + "T56S", + "K68R", + "D69E", + "Q73A", + "N75T", + "R76P", + "N77I", + "Q78K", + "G80A", + "K81Q", + "K85G", + "Q86K", + "K92P", + "P95A", + "P96V", + "P97Q", + "N102P", + "G103A", + "N104S", + "A108P", + "D160E", + "S171T", + "K190R", + "N259T" + ], + "E1": [ + "N9S", + "V36I", + "K37Q", + "L38I", + "I60V", + "T69S", + "A70E", + "Y72T", + "Q77K", + "S98T", + "T101S", + "S128A", + "V129A", + "G138A", + "E139D", + "A144T", + "V145I", + "V159I", + "K160R", + "I162T", + "G182E", + "H196T", + "S209T", + "A226S", + "I229V", + "Q262K", + "T317S", + "S323T", + "S325A", + "L339V", + "K340R", + "S342A", + "V343T", + "A347V", + "M354V", + "L410I", + "I420L", + "I421V", + "I422V", + "V426I", + "T429I", + "M433T", + "N438G", + "K440R", + "H441R", + "N442Y" + ], + "E2": [ + "R13K", + "A35E", + "V45I", + "L47I", + "N60G", + "G63S", + "D69N", + "M70L", + "H71Q", + "K73N", + "V93I", + "A106E", + "I110L", + "S118T", + "E128K", + "T132I", + "A147T", + "E148D", + "S184G", + "T189N", + "K194T", + "S195N", + "K201N", + "I211V", + "N212S", + "A214V", + "T216K", + "Y217F", + "K222Q", + "A224N", + "Q225R", + "N233S", + "Y238F", + "A247S", + "Y259F", + "T262S", + "M275V", + "T277S", + "K290N", + "D301G", + "E305Q", + "T315V", + "V321I", + "K336Q", + "L351M", + "V355I", + "I356V", + "H361Y", + "I368V", + "T379I", + "V382I", + "T386L", + "W387C", + "F389L", + "Q407R", + "F410I", + "V414L", + "T420P", + "A421T" + ], + "E3": [ + "T5A", + "M6V", + "M21I", + "A28S", + "A36E", + "V38I", + "E45V", + "E48D", + "A49S", + "K57Q" + ], + "nsP1": [ + "H76N", + "F94Y", + "E111G", + "K114Q", + "M116L", + "E117A", + "N124Q", + "D125E", + "D127S", + "T132S", + "V147I", + "K269T", + "K299T", + "K396R", + "E403D", + "I440V", + "I441V", + "I455V", + "D474K", + "Q475P", + "P479V", + "I482V", + "A484D", + "V487I", + "Q488G", + "E492N", + "E495A", + "V500I", + "A514T", + "P515A" + ], + "nsP2": [ + "T16S", + "V26I", + "T39A", + "P43A", + "V70I", + "H75T", + "V122T", + "S126G", + "E127D", + "L152M", + "V157I", + "Y177H", + "R203K", + "K223R", + "M224A", + "I230N", + "H244Y", + "D247E", + "P334Q", + "K338Q", + "D352E", + "N441E", + "T443S", + "E451A", + "L461M", + "K463E", + "D465N", + "D492S", + "M493L", + "E496D", + "A502E", + "Y503N", + "E506T", + "L532I", + "R543K", + "L558I", + "K560M", + "E561D", + "A578T", + "V582A", + "T587S", + "T589A", + "D592A", + "V597I", + "V602M", + "S604R", + "H613N", + "T615S", + "A624T", + "N642T", + "I643V", + "P644T", + "H654S", + "S661T", + "V671L", + "K686R", + "I720V", + "V750I", + "K767R", + "T785S", + "G788N", + "L789F" + ], + "nsP3": [ + "E16D", + "V20I", + "A62K", + "V79I", + "I92V", + "I95L", + "I156V", + "V173L", + "A174T", + "A178V", + "T197I", + "M218V", + "S263N", + "H312C", + "K332R", + "T349I", + "G351V", + "A352E", + "P353R", + "E354A", + "T355G", + "A357P", + "I359R", + "N360S", + "R361C", + "D362N", + "T364R", + "P366L", + "T372I", + "A373S", + "I374V", + "E375V", + "E377S", + "A378V", + "E379V", + "D380S", + "T381S", + "M382E", + "L384T", + "S386E", + "E387T", + "S388N", + "M389L", + "S390T", + "H391D", + "M393T", + "L395S", + "A403R", + "P404L", + "S405D", + "I408L", + "V421A", + "A433V", + "S434G", + "I435F", + "I436V", + "A439F", + "A442T", + "C446R", + "M449Q", + "V459I", + "V465I", + "K473R", + "S484N", + "R489S", + "T490A", + "V493F", + "V511A", + "T512P", + "S514I", + "R515H", + "P517R", + "R519V", + "V527A", + "D554E" + ], + "nsP4": [ + "E31L", + "E33D", + "I34D", + "A35V", + "D43N", + "I47L", + "P58Q", + "R68K", + "V75I", + "K78M", + "I80M", + "K82R", + "A90T", + "E91D", + "G92N", + "A108S", + "A113S", + "S116C", + "R118K", + "I141T", + "S155T", + "A176S", + "E238D", + "K241R", + "E242D", + "T275C", + "S365Q", + "H550F", + "S553A", + "A554E", + "V559A", + "F562S", + "A563V", + "V580I", + "M583A", + "T586A", + "S591N", + "A594T", + "R596K", + "T604H" + ] + }, + "labels": { + "aa": "6k: H13N, I20L, V32I, L35I, V42F; CP: F4Y, M13A, F15Y, F19Y, A20P, F27Y, M36L, D55E, T56S, K68R, D69E, Q73A, N75T, R76P, N77I, Q78K, G80A, K81Q, K85G, Q86K, K92P, P95A, P96V, P97Q, N102P, G103A, N104S, A108P, D160E, S171T, K190R, N259T; E1: N9S, V36I, K37Q, L38I, I60V, T69S, A70E, Y72T, Q77K, S98T, T101S, S128A, V129A, G138A, E139D, A144T, V145I, V159I, K160R, I162T, G182E, H196T, S209T, A226S, I229V, Q262K, T317S, S323T, S325A, L339V, K340R, S342A, V343T, A347V, M354V, L410I, I420L, I421V, I422V, V426I, T429I, M433T, N438G, K440R, H441R, N442Y; E2: R13K, A35E, V45I, L47I, N60G, G63S, D69N, M70L, H71Q, K73N, V93I, A106E, I110L, S118T, E128K, T132I, A147T, E148D, S184G, T189N, K194T, S195N, K201N, I211V, N212S, A214V, T216K, Y217F, K222Q, A224N, Q225R, N233S, Y238F, A247S, Y259F, T262S, M275V, T277S, K290N, D301G, E305Q, T315V, V321I, K336Q, L351M, V355I, I356V, H361Y, I368V, T379I, V382I, T386L, W387C, F389L, Q407R, F410I, V414L, T420P, A421T; E3: T5A, M6V, M21I, A28S, A36E, V38I, E45V, E48D, A49S, K57Q; nsP1: H76N, F94Y, E111G, K114Q, M116L, E117A, N124Q, D125E, D127S, T132S, V147I, K269T, K299T, K396R, E403D, I440V, I441V, I455V, D474K, Q475P, P479V, I482V, A484D, V487I, Q488G, E492N, E495A, V500I, A514T, P515A; nsP2: T16S, V26I, T39A, P43A, V70I, H75T, V122T, S126G, E127D, L152M, V157I, Y177H, R203K, K223R, M224A, I230N, H244Y, D247E, P334Q, K338Q, D352E, N441E, T443S, E451A, L461M, K463E, D465N, D492S, M493L, E496D, A502E, Y503N, E506T, L532I, R543K, L558I, K560M, E561D, A578T, V582A, T587S, T589A, D592A, V597I, V602M, S604R, H613N, T615S, A624T, N642T, I643V, P644T, H654S, S661T, V671L, K686R, I720V, V750I, K767R, T785S, G788N, L789F; nsP3: E16D, V20I, A62K, V79I, I92V, I95L, I156V, V173L, A174T, A178V, T197I, M218V, S263N, H312C, K332R, T349I, G351V, A352E, P353R, E354A, T355G, A357P, I359R, N360S, R361C, D362N, T364R, P366L, T372I, A373S, I374V, E375V, E377S, A378V, E379V, D380S, T381S, M382E, L384T, S386E, E387T, S388N, M389L, S390T, H391D, M393T, L395S, A403R, P404L, S405D, I408L, V421A, A433V, S434G, I435F, I436V, A439F, A442T, C446R, M449Q, V459I, V465I, K473R, S484N, R489S, T490A, V493F, V511A, T512P, S514I, R515H, P517R, R519V, V527A, D554E; nsP4: E31L, E33D, I34D, A35V, D43N, I47L, P58Q, R68K, V75I, K78M, I80M, K82R, A90T, E91D, G92N, A108S, A113S, S116C, R118K, I141T, S155T, A176S, E238D, K241R, E242D, T275C, S365Q, H550F, S553A, A554E, V559A, F562S, A563V, V580I, M583A, T586A, S591N, A594T, R596K, T604H" + } + }, + "children": [ + { + "name": "MK088531.1", + "node_attrs": { + "div": 0.8575527214141688, + "num_date": { + "value": 1968.5120488424898, + "confidence": [ + 1968.2373472245736, + 1969.2973511344228 + ] + }, + "author": { + "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", + "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." + }, + "country": { + "value": "Guyana", + "confidence": { + "Brazil": 0.0032171227253048594, + "French_Guiana": 0.002437583527958709, + "Guyana": 0.9703579385796132, + "Peru": 0.002186622597316045 + }, + "entropy": 0.21500277356635436 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1968", + "confidence": { + "1967": 0.023058891673490893, + "1968": 0.643543372848725, + "1970": 0.012215622512197544, + "1971": 0.012095195614168481 + }, + "entropy": 2.0016740793988785 + }, + "subtype": { + "value": "V_CABV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9996811671025183 + }, + "entropy": 0.002885655799162366 + }, + "place_of_collection": { + "value": "Guyana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A127G", + "G752A", + "A757C", + "G2317A", + "G5210A", + "T7220C", + "C7347G", + "T10797A", + "C10798T", + "G10800A", + "G10802A", + "T10804A", + "G10805C", + "C10863A", + "A10865T", + "G10866T", + "G10867T", + "C10872T" + ], + "E1": [ + "I266N", + "R267Q", + "A268T", + "E269Q", + "T288N", + "R289F", + "S291F" + ], + "nsP1": [ + "E28G", + "N238T" + ], + "nsP2": [ + "R223H" + ], + "nsP4": [ + "L549V" + ] + }, + "labels": { + "aa": "E1: I266N, R267Q, A268T, E269Q, T288N, R289F, S291F; nsP1: E28G, N238T; nsP2: R223H; nsP4: L549V" + } + } + }, + { + "name": "AF075259.1", + "node_attrs": { + "div": 0.8559142214141688, + "num_date": { + "value": 1968.0013661202186, + "confidence": [ + 1968.0013661202186, + 1968.8955374133302 + ] + }, + "author": { + "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", + "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." + }, + "country": { + "value": "Guyana", + "confidence": { + "Guyana": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1968", + "confidence": { + "1968": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "V_CABV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Guyana" + } + }, + "branch_attrs": { + "mutations": {} + } + } + ] + }, + { + "name": "NODE_0000081", + "node_attrs": { + "div": 0.4743023614141688, + "num_date": { + "value": 1887.9494449550523, + "confidence": [ + 1881.9571702672392, + 1892.9631312509084 + ] + }, + "country": { + "value": "Brazil", + "confidence": { + "Brazil": 0.10672176502407585, + "Panama": 0.07538011247397923, + "Peru": 0.08202718408335842, + "Venezuela": 0.09353555875576569 + }, + "entropy": 2.7786771284974754 + }, + "year": { + "value": "1997", + "confidence": { + "1971": 0.022222498145282786, + "1973": 0.022086596476345553, + "1997": 0.022438000692008495, + "2017": 0.022179911737090087 + }, + "entropy": 3.8498269689110005 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999868840351643 + }, + "entropy": 0.00016056136137940693 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A236T", + "C239A", + "C398G", + "A407C", + "G433A", + "G440T", + "A554T", + "C1283A", + "A1640G", + "A1748T", + "A1764T", + "T2120A", + "T2195A", + "A2207C", + "A2315G", + "A2789C", + "C2867A", + "G2894C", + "A3005G", + "G3155C", + "C3267T", + "A3371T", + "G3395C", + "G3423A", + "C3491T", + "A3551C", + "C3655G", + "C3794A", + "A3818C", + "G3876T", + "C3902A", + "A3951G", + "A4121C", + "G4136A", + "A4181C", + "A4316T", + "C4346G", + "A4425T", + "T4460C", + "T4604A", + "C4646T", + "A4772C", + "T5024A", + "G5113C", + "C5149A", + "T5228A", + "T5279A", + "A5301G", + "T5348G", + "A5418C", + "G5436C", + "T5618C", + "A5732G", + "C5789G", + "T5831A", + "A5847C", + "T6200A", + "A6458G", + "G6695C", + "A6710C", + "G6959T", + "A7020G", + "A7031T", + "G7367C", + "G7376C", + "T7426C", + "C7508T", + "A7852C", + "G8056T", + "A8267C", + "C8350T", + "G8494C", + "T8545C", + "A8600C", + "A8674G", + "T8743C", + "A8920C", + "G9121C", + "T9130A", + "C9283G", + "A9513G", + "A9628G", + "C9679G", + "A9848T", + "T10044A", + "T10114G", + "A10258G", + "C10411G", + "A10786T", + "T10835G", + "A10915G", + "G11077C", + "A11354T" + ], + "6k": [ + "T6S" + ], + "E1": [ + "F15Y", + "Q262H", + "S279A" + ], + "E2": [ + "K317R" + ], + "nsP1": [ + "D118E", + "R130Q" + ], + "nsP2": [ + "T39S", + "D592N", + "A669G", + "A743S", + "T768A" + ], + "nsP3": [ + "M132L", + "R361T", + "A373D", + "D399E", + "I424V", + "A469P" + ], + "nsP4": [ + "D43E", + "I440V", + "I575T" + ] + }, + "labels": { + "aa": "6k: T6S; E1: F15Y, Q262H, S279A; E2: K317R; nsP1: D118E, R130Q; nsP2: T39S, D592N, A669G, A743S, T768A; nsP3: M132L, R361T, A373D, D399E, I424V, A469P; nsP4: D43E, I440V, I575T" + } + }, + "children": [ + { + "name": "NODE_0000087", + "node_attrs": { + "div": 0.6752122414141688, + "num_date": { + "value": 1924.7823114622438, + "confidence": [ + 1920.981144499992, + 1927.3537283425007 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Argentina": 0.15384097976627198, + "Brazil": 0.14852632763242327, + "Guyana": 0.0902949013787921, + "Peru": 0.17621932829599954 + }, + "entropy": 2.558524029716888 + }, + "year": { + "value": "1997", + "confidence": { + "1971": 0.022222497517790093, + "1973": 0.022086597441053898, + "1997": 0.022437999908438665, + "2017": 0.02217991052817386 + }, + "entropy": 3.849826969059097 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999808418547101 + }, + "entropy": 0.00022726872690719753 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T33A", + "A43T", + "C65T", + "A83C", + "G113C", + "T143A", + "T146C", + "C164T", + "G182A", + "T192C", + "G269A", + "T311C", + "G329A", + "A394C", + "A414G", + "C416G", + "T422C", + "C425T", + "C447T", + "A482C", + "C485G", + "T500C", + "T521C", + "T533C", + "C542A", + "G551T", + "T611C", + "A617G", + "C635A", + "G662A", + "T665C", + "G680A", + "C689A", + "G710C", + "T728A", + "C752G", + "A759G", + "T770C", + "C776T", + "T779C", + "G794A", + "G797A", + "G809A", + "G811A", + "G812A", + "G827A", + "C854A", + "T878G", + "T884G", + "A909C", + "A914C", + "T920C", + "G962T", + "G995A", + "G998A", + "T1007C", + "C1043T", + "T1052G", + "T1056C", + "G1058A", + "A1073C", + "C1080T", + "C1091T", + "A1100G", + "T1109A", + "G1139C", + "C1151T", + "A1163G", + "G1241A", + "C1272T", + "A1277G", + "T1287C", + "G1298C", + "G1349T", + "A1362G", + "C1367A", + "G1373A", + "T1382C", + "T1391C", + "C1394T", + "A1407C", + "G1412T", + "C1418T", + "A1419T", + "C1430T", + "G1440A", + "A1441G", + "C1448A", + "A1454G", + "G1463A", + "C1466T", + "C1467A", + "G1475A", + "G1478A", + "G1494C", + "C1496T", + "C1506T", + "A1507C", + "A1510C", + "C1514A", + "G1517A", + "A1528C", + "G1532A", + "G1535C", + "G1542A", + "G1565C", + "G1566A", + "C1567T", + "A1568C", + "A1574G", + "A1577C", + "C1581A", + "C1585T", + "T1592C", + "T1595G", + "A1652T", + "G1658A", + "A1664T", + "G1670A", + "G1676A", + "A1695T", + "A1697C", + "G1703A", + "G1706C", + "C1721T", + "T1730G", + "G1745C", + "A1749C", + "A1757G", + "A1763C", + "C1772A", + "A1778G", + "T1784G", + "C1788G", + "T1809G", + "T1811A", + "C1814T", + "C1815A", + "T1823A", + "A1824C", + "G1826C", + "C1829T", + "A1862C", + "C1877G", + "C1887G", + "T1895C", + "G1904C", + "C1916T", + "A1937G", + "C1974A", + "T1985C", + "C1986T", + "G2018C", + "C2036T", + "A2057T", + "A2081G", + "T2086A", + "C2090G", + "C2093T", + "G2096T", + "G2102C", + "C2132T", + "T2135C", + "G2138A", + "C2147T", + "A2168G", + "A2219G", + "C2222T", + "T2228A", + "A2246T", + "C2261T", + "G2270C", + "A2282G", + "A2294T", + "A2297G", + "G2306C", + "C2312G", + "A2322C", + "G2327C", + "G2334A", + "C2336A", + "A2337G", + "T2339G", + "G2351A", + "C2354T", + "C2375T", + "A2387T", + "C2393A", + "C2450A", + "T2453C", + "G2454A", + "C2510T", + "G2522T", + "C2534T", + "A2555G", + "A2573C", + "T2603C", + "C2606T", + "C2615G", + "A2637C", + "C2648T", + "G2669A", + "A2678C", + "C2690A", + "A2696T", + "G2702A", + "T2708C", + "T2714A", + "C2717G", + "G2732A", + "G2738A", + "A2762G", + "A2774C", + "C2799T", + "T2813G", + "G2834A", + "C2850T", + "G2876C", + "G2888C", + "C2922T", + "C2927T", + "G2930A", + "C2933T", + "A2948C", + "G2951C", + "A2966C", + "A2970G", + "C2975T", + "G2984C", + "G3000C", + "C3017T", + "C3050G", + "C3056G", + "G3071T", + "A3092C", + "C3093T", + "G3098A", + "C3113T", + "A3126T", + "C3131G", + "T3156C", + "A3164G", + "G3167T", + "A3182G", + "G3188A", + "G3212A", + "C3243T", + "A3260T", + "C3272T", + "G3277A", + "T3281C", + "C3296T", + "G3302T", + "A3339C", + "A3347T", + "C3353A", + "G3356T", + "A3362G", + "G3368T", + "G3377A", + "C3407T", + "T3413G", + "C3422T", + "A3424G", + "T3428C", + "T3431C", + "A3440C", + "G3455T", + "A3459C", + "T3461C", + "G3467A", + "C3477T", + "C3485A", + "A3490G", + "C3500G", + "C3505G", + "A3521G", + "T3526C", + "C3527T", + "G3557T", + "C3560T", + "G3563A", + "C3579A", + "T3605C", + "C3609A", + "T3620C", + "G3628A", + "A3638G", + "A3644C", + "A3653G", + "G3654A", + "G3660C", + "G3668A", + "T3686G", + "G3692T", + "A3693C", + "G3701T", + "A3707G", + "T3740G", + "T3743C", + "T3749C", + "T3761A", + "A3770G", + "G3776A", + "G3782T", + "A3791T", + "C3836T", + "T3848C", + "T3851A", + "G3855A", + "T3860A", + "C3869T", + "C3878T", + "C3887T", + "C3903T", + "A3929C", + "A3947G", + "C3952T", + "A3953T", + "C3995T", + "G4011C", + "G4012A", + "C4037T", + "A4040C", + "A4055G", + "G4058C", + "T4061C", + "C4069A", + "G4070T", + "A4076G", + "A4082G", + "A4112G", + "C4121T", + "A4127G", + "G4130A", + "C4133T", + "G4142T", + "G4148A", + "G4162A", + "A4190T", + "G4194T", + "T4211G", + "G4266C", + "T4274G", + "G4283A", + "A4305G", + "T4316C", + "G4317A", + "C4328T", + "A4329C", + "C4361T", + "T4404C", + "C4409T", + "G4418T", + "T4439C", + "C4451T", + "A4496T", + "A4511G", + "A4517C", + "G4520A", + "T4562C", + "T4574C", + "C4601A", + "A4605C", + "G4607C", + "A4615T", + "C4616T", + "T4637A", + "A4683G", + "A4688C", + "C4700A", + "A4718C", + "C4748T", + "C4749T", + "G4754A", + "A4781G", + "G4796A", + "A4805G", + "C4824T", + "G4845T", + "A4868C", + "G4874T", + "C4886T", + "T4898A", + "A4910G", + "C4913G", + "T4920C", + "G4925C", + "A4934G", + "T4940C", + "T4943G", + "T4962G", + "T4976C", + "T4980C", + "C4981T", + "A4982C", + "A5012C", + "A5030G", + "C5032A", + "C5034A", + "C5035G", + "G5045T", + "G5061A", + "A5071G", + "A5072T", + "T5073C", + "C5074A", + "G5082A", + "A5087G", + "T5090G", + "C5095T", + "C5098T", + "A5099G", + "G5100C", + "A5102G", + "G5104T", + "A5106C", + "A5108T", + "A5109G", + "C5111A", + "A5112T", + "G5115A", + "G5119A", + "C5122T", + "A5123T", + "G5131C", + "G5135T", + "C5136G", + "A5140C", + "A5141T", + "G5144A", + "A5145C", + "C5150A", + "T5152C", + "G5157A", + "A5158C", + "G5160C", + "G5163A", + "T5180C", + "T5181A", + "G5183A", + "A5189G", + "G5194C", + "A5199T", + "C5201G", + "A5203T", + "C5204T", + "A5206G", + "A5207T", + "A5208T", + "G5213C", + "G5231A", + "G5235T", + "C5239G", + "C5241T", + "C5245A", + "T5250A", + "C5252T", + "A5253T", + "C5260A", + "A5273G", + "T5276A", + "C5282T", + "T5291C", + "G5294C", + "C5303A", + "C5306G", + "A5307G", + "T5311A", + "A5314G", + "C5319A", + "G5323A", + "A5337T", + "C5339T", + "A5344G", + "G5345T", + "C5350T", + "T5352C", + "C5353A", + "C5356A", + "A5357G", + "T5363G", + "A5364T", + "T5373G", + "G5378C", + "G5399A", + "G5401A", + "T5405C", + "G5408A", + "T5417A", + "G5420C", + "G5431C", + "A5432C", + "A5462G", + "C5472T", + "T5474G", + "C5476T", + "T5479A", + "C5492T", + "G5497C", + "A5498G", + "A5502C", + "G5503C", + "A5507G", + "T5513A", + "G5519A", + "C5525G", + "T5527A", + "A5564G", + "C5568G", + "G5592A", + "G5593C", + "C5594T", + "A5624T", + "T5629A", + "C5633A", + "G5639T", + "G5660A", + "G5663C", + "T5690C", + "C5693A", + "A5747G", + "G5762A", + "G5786A", + "A5843T", + "C5844T", + "A5849C", + "C5870G", + "G5897A", + "C5901A", + "G5903A", + "A5927G", + "G5945C", + "A5947G", + "A5948C", + "C5951T", + "T5957A", + "T5964C", + "G5970A", + "A5972T", + "G5987A", + "C5996T", + "C5999A", + "T6014C", + "T6029C", + "T6032C", + "T6044C", + "T6047G", + "A6054C", + "T6079C", + "T6124C", + "T6137C", + "T6143C", + "C6144A", + "A6164C", + "A6182G", + "C6185A", + "G6203A", + "A6223G", + "A6239G", + "A6248C", + "A6251C", + "A6266T", + "T6272A", + "C6278T", + "A6281T", + "C6282T", + "A6332G", + "A6341G", + "G6374A", + "G6416A", + "A6419G", + "G6443A", + "A6452G", + "A6479G", + "A6485T", + "A6494G", + "C6501T", + "G6512A", + "A6515T", + "T6521C", + "G6524T", + "C6526G", + "G6533T", + "G6569A", + "C6581G", + "A6596T", + "T6608C", + "A6614G", + "G6617A", + "G6632C", + "T6641A", + "G6662C", + "G6686A", + "T6692G", + "A6731C", + "C6755T", + "G6785A", + "A6787C", + "T6794C", + "C6801T", + "C6842T", + "C6879T", + "A6881G", + "G6887A", + "C6897T", + "T6900C", + "G6902C", + "T6941C", + "G6947C", + "T6953A", + "C6977A", + "A6986G", + "C6998T", + "G7001T", + "G7011A", + "G7013T", + "T7037A", + "G7049T", + "G7052A", + "G7061C", + "A7094C", + "C7148T", + "A7154G", + "G7172A", + "A7187C", + "G7190A", + "C7196A", + "G7199A", + "A7202G", + "A7208G", + "T7211C", + "G7244A", + "A7253G", + "C7274T", + "A7280G", + "G7292A", + "T7295C", + "G7307C", + "T7325C", + "C7334T", + "C7337T", + "A7346T", + "A7364T", + "T7385A", + "G7389T", + "A7391T", + "C7395T", + "A7406G", + "G7428A", + "T7429C", + "T7436G", + "C7442G", + "T7450C", + "G7451A", + "C7464T", + "G7471A", + "G7481A", + "G7489A", + "A7509G", + "A7511G", + "C7540T", + "C7558A", + "T7572A", + "A7584T", + "A7598G", + "C7606T", + "T7617A", + "G7622C", + "C7628A", + "C7630A", + "A7648G", + "G7666T", + "A7678G", + "C7693A", + "C7699G", + "C7711T", + "A7760C", + "A7761G", + "T7768G", + "C7771A", + "A7777G", + "A7785C", + "G7788A", + "A7790G", + "A7791C", + "T7792A", + "A7796G", + "G7799A", + "G7800A", + "G7810T", + "A7811G", + "A7812G", + "T7813A", + "A7818C", + "G7820A", + "G7821C", + "G7834A", + "A7836G", + "G7837T", + "A7840T", + "C7844G", + "G7868A", + "A7872C", + "A7882G", + "C7900A", + "G7909A", + "C7910A", + "A7912G", + "A7924G", + "G7939A", + "T7951C", + "T7969C", + "G7975A", + "T7996A", + "T8000C", + "A8011C", + "G8029A", + "G8044C", + "G8051T", + "G8077A", + "C8098T", + "C8104T", + "A8125C", + "C8128T", + "C8164T", + "T8173C", + "A8179C", + "C8182G", + "A8221G", + "T8278C", + "C8318T", + "C8326A", + "C8356A", + "T8365C", + "G8371A", + "T8389G", + "C8438A", + "A8439C", + "G8440A", + "A8467C", + "C8477T", + "A8500T", + "C8522T", + "C8537T", + "A8548C", + "A8555C", + "G8572A", + "G8593A", + "A8596T", + "G8602C", + "A8621G", + "A8624C", + "T8629C", + "C8644T", + "T8647C", + "A8656T", + "T8686C", + "A8698C", + "C8702T", + "G8716A", + "A8725T", + "T8731C", + "A8746G", + "G8755A", + "A8779C", + "A8782G", + "T8785C", + "A8794T", + "G8804C", + "C8815G", + "G8840A", + "G8848T", + "T8854G", + "A8870C", + "A8872C", + "T8878A", + "C8880A", + "C8890T", + "A8893T", + "A8902G", + "C8935T", + "T8959A", + "C8982G", + "A8992C", + "A9001C", + "G9002A", + "A9037C", + "A9041C", + "G9045A", + "A9046G", + "G9048A", + "T9052G", + "A9076T", + "G9127A", + "C9133A", + "A9143C", + "A9166C", + "C9172T", + "A9176T", + "C9179G", + "A9180C", + "A9182G", + "G9211A", + "A9247G", + "A9253T", + "C9254T", + "G9256A", + "G9292T", + "G9302T", + "A9347T", + "A9349C", + "A9358G", + "A9364T", + "C9376A", + "C9385T", + "G9388A", + "G9391A", + "G9400C", + "A9409T", + "G9412T", + "T9415C", + "C9416T", + "C9422T", + "A9431C", + "A9432G", + "C9439G", + "G9476A", + "G9478T", + "T9484C", + "T9499A", + "C9508G", + "G9509A", + "T9510C", + "T9521A", + "C9523A", + "C9526G", + "A9533C", + "T9538G", + "T9546A", + "C9559T", + "G9568T", + "A9569C", + "T9576A", + "A9601C", + "G9668C", + "G9670T", + "A9692G", + "A9694G", + "G9700C", + "T9702C", + "T9703C", + "T9704G", + "G9706A", + "T9709A", + "A9712C", + "A9736G", + "T9745A", + "G9748C", + "T9760G", + "A9775G", + "C9778T", + "C9781T", + "T9791G", + "T9793G", + "C9796T", + "G9805C", + "C9818A", + "C9820G", + "G9841A", + "G9853A", + "C9874T", + "T9891G", + "G9901C", + "C9904T", + "C9916G", + "G9919T", + "C9922T", + "A9934C", + "C9935T", + "G9937A", + "A9943G", + "G9947A", + "G9961T", + "C9979A", + "G9989A", + "C9993T", + "G10006A", + "G10012A", + "C10027T", + "C10051A", + "A10052G", + "A10061C", + "C10079T", + "A10093T", + "T10099G", + "C10108A", + "A10110G", + "G10114A", + "C10138T", + "G10175T", + "A10205C", + "G10208A", + "C10209A", + "A10210G", + "C10213G", + "G10219A", + "C10234T", + "A10246C", + "C10261T", + "T10279C", + "C10288T", + "G10297A", + "A10313C", + "A10314G", + "A10318G", + "C10321T", + "T10326C", + "G10343T", + "T10354C", + "A10359T", + "A10363C", + "C10393T", + "A10420G", + "C10423G", + "C10435A", + "G10460A", + "A10464G", + "A10484G", + "A10513C", + "C10516A", + "A10525G", + "A10529G", + "A10531G", + "T10540C", + "G10550A", + "A10585G", + "C10606T", + "A10607C", + "T10625A", + "C10630T", + "C10632A", + "G10666A", + "A10675C", + "A10681C", + "C10702G", + "A10726G", + "C10762A", + "C10765A", + "A10783T", + "C10792T", + "A10796G", + "C10799A", + "C10813T", + "T10816C", + "T10828A", + "C10846A", + "C10897T", + "A10900G", + "A10904T", + "C10907T", + "T10909G", + "T10918C", + "T10924C", + "G10951T", + "G10981A", + "A10996T", + "C11011A", + "G11027T", + "C11032G", + "C11036G", + "A11038G", + "C11040T", + "G11053A", + "T11059C", + "A11060C", + "C11083A", + "G11097A", + "G11098A", + "G11101T", + "A11116G", + "A11118T", + "G11120C", + "T11137C", + "T11155C", + "G11164A", + "T11177C", + "A11212G", + "C11236A", + "A11239C", + "A11275T", + "G11281A", + "G11293T", + "C11296T", + "A11360G", + "G11361A", + "C11366G", + "T11387A", + "C11412T" + ], + "6k": [ + "I20S", + "V39M", + "G53S", + "A54V" + ], + "CP": [ + "F4Y", + "Y8F", + "M13V", + "F19Y", + "A21P", + "K67R", + "D69E", + "N75T", + "R76Q", + "N77A", + "N79D", + "G80K", + "K83N", + "N84G", + "Q86P", + "G87T", + "K92S", + "K93N", + "P95A", + "G103S", + "N104T", + "A164S" + ], + "E1": [ + "I18V", + "K37R", + "A59S", + "T69P", + "A70K", + "K105R", + "M109T", + "A115S", + "Q120L", + "V154I", + "N155S", + "I162V", + "I177V", + "V184I", + "I203L", + "S209T", + "T211N", + "K225N", + "I266V", + "T302S", + "V343L", + "L346V", + "A347V", + "M354L", + "R366K", + "Y373F", + "V374L", + "Y393H" + ], + "E2": [ + "I20V", + "E81Q", + "V93I", + "A106E", + "T140S", + "A147T", + "K160Q", + "R161K", + "G162D", + "K194Q", + "K201N", + "T205S", + "Q206A", + "I207V", + "A247S", + "T262S", + "M275I", + "K290R", + "E305N", + "V316T", + "S320T", + "K324Q", + "F328Y", + "K336Q", + "F338Y", + "V369L", + "I377V", + "I380T", + "S381A", + "F410V" + ], + "E3": [ + "Q18T", + "K57Q" + ], + "nsP1": [ + "E117A", + "N124E", + "Q146H", + "I239V", + "R256K", + "H270Q", + "I440V", + "I455L", + "T459S", + "D466S", + "Q475K", + "A484P", + "Q488S", + "E489A", + "E495A", + "V500I", + "A508I", + "L513M", + "A514V" + ], + "nsP2": [ + "T16S", + "E19D", + "Q47E", + "S54A", + "P80A", + "H109N", + "L146Q", + "V229I", + "I230V", + "V269I", + "N441D", + "E451Q", + "M493L", + "Y503H", + "E506D", + "R543K", + "N592S", + "S604R", + "H614R", + "H617Q", + "P619R", + "V626A", + "P644T", + "H654N", + "R660K", + "G669S", + "V671L", + "V736I", + "A768V", + "G788Q" + ], + "nsP3": [ + "T13N", + "S44N", + "A55S", + "V79L", + "I92V", + "V96I", + "N100H", + "Y195F", + "M218V", + "A272S", + "Q279H", + "S311A", + "S317L", + "A334E", + "P335S", + "E338D", + "A344T", + "E347G", + "S348Q", + "G351R", + "T355I", + "T356M", + "A357P", + "R358L", + "I359L", + "N360E", + "T361S", + "D362N", + "G363E", + "T364I", + "R367T", + "P369A", + "E370A", + "T372P", + "D373E", + "I374T", + "D376T", + "E377Q", + "A378T", + "L384I", + "S388T", + "S390W", + "H391L", + "Q392R", + "M393L", + "Q394H", + "A402S", + "A403G", + "P404S", + "S405Y", + "F407I", + "I408F", + "T410N", + "H415Q", + "I426V", + "L427Q", + "D428G", + "L430M", + "G431D", + "I436F", + "K438S", + "S440L", + "S441Q", + "A442E", + "K445*", + "F448V", + "M449I", + "R457K", + "R467T", + "H481*", + "A482V", + "L483*", + "R489T", + "S491P", + "V499E", + "P513A", + "G521T", + "V533E", + "N534K", + "D554E" + ], + "nsP4": [ + "K82S", + "A90T", + "V126A", + "I141T", + "L148M", + "K174R", + "T275S", + "H362P", + "V437I", + "A563S", + "V576T", + "M583T", + "R590K", + "R596K", + "I603V" + ] + }, + "labels": { + "aa": "6k: I20S, V39M, G53S, A54V; CP: F4Y, Y8F, M13V, F19Y, A21P, K67R, D69E, N75T, R76Q, N77A, N79D, G80K, K83N, N84G, Q86P, G87T, K92S, K93N, P95A, G103S, N104T, A164S; E1: I18V, K37R, A59S, T69P, A70K, K105R, M109T, A115S, Q120L, V154I, N155S, I162V, I177V, V184I, I203L, S209T, T211N, K225N, I266V, T302S, V343L, L346V, A347V, M354L, R366K, Y373F, V374L, Y393H; E2: I20V, E81Q, V93I, A106E, T140S, A147T, K160Q, R161K, G162D, K194Q, K201N, T205S, Q206A, I207V, A247S, T262S, M275I, K290R, E305N, V316T, S320T, K324Q, F328Y, K336Q, F338Y, V369L, I377V, I380T, S381A, F410V; E3: Q18T, K57Q; nsP1: E117A, N124E, Q146H, I239V, R256K, H270Q, I440V, I455L, T459S, D466S, Q475K, A484P, Q488S, E489A, E495A, V500I, A508I, L513M, A514V; nsP2: T16S, E19D, Q47E, S54A, P80A, H109N, L146Q, V229I, I230V, V269I, N441D, E451Q, M493L, Y503H, E506D, R543K, N592S, S604R, H614R, H617Q, P619R, V626A, P644T, H654N, R660K, G669S, V671L, V736I, A768V, G788Q; nsP3: T13N, S44N, A55S, V79L, I92V, V96I, N100H, Y195F, M218V, A272S, Q279H, S311A, S317L, A334E, P335S, E338D, A344T, E347G, S348Q, G351R, T355I, T356M, A357P, R358L, I359L, N360E, T361S, D362N, G363E, T364I, R367T, P369A, E370A, T372P, D373E, I374T, D376T, E377Q, A378T, L384I, S388T, S390W, H391L, Q392R, M393L, Q394H, A402S, A403G, P404S, S405Y, F407I, I408F, T410N, H415Q, I426V, L427Q, D428G, L430M, G431D, I436F, K438S, S440L, S441Q, A442E, K445*, F448V, M449I, R457K, R467T, H481*, A482V, L483*, R489T, S491P, V499E, P513A, G521T, V533E, N534K, D554E; nsP4: K82S, A90T, V126A, I141T, L148M, K174R, T275S, H362P, V437I, A563S, V576T, M583T, R590K, R596K, I603V" + } + }, + "children": [ + { + "name": "NODE_0000088", + "node_attrs": { + "div": 0.7639649414141688, + "num_date": { + "value": 1942.2217085127306, + "confidence": [ + 1939.589062424863, + 1943.7657905658841 + ] + }, + "country": { + "value": "Argentina", + "confidence": { + "Argentina": 0.3124796096272811, + "Brazil": 0.24893644005494786, + "Guyana": 0.15048535436976362, + "Peru": 0.05561092394682792 + }, + "entropy": 2.0896847577486004 + }, + "year": { + "value": "1997", + "confidence": { + "1971": 0.022210491335563957, + "1973": 0.022089515758778773, + "1997": 0.022424704884672457, + "2017": 0.022162969766419155 + }, + "entropy": 3.8498193114911436 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999871751814479 + }, + "entropy": 0.00015728513610190162 + }, + "place_of_collection": { + "value": "Argentina" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C11T", + "T266A", + "G359A", + "C407T", + "A431G", + "T440C", + "C446T", + "C455T", + "C458T", + "G479A", + "C491T", + "A518T", + "C528A", + "C581T", + "T590G", + "G602A", + "C605T", + "C606T", + "G617C", + "A623T", + "C632T", + "A659G", + "A674C", + "C678T", + "C692T", + "T695C", + "G701A", + "C710T", + "C726T", + "C807T", + "T822C", + "A827T", + "A830T", + "G1034C", + "C1103A", + "A1115G", + "C1191T", + "G1205T", + "C1208A", + "T1247C", + "A1253T", + "G1289C", + "C1361G", + "A1370G", + "C1379T", + "G1400A", + "A1403C", + "G1441C", + "G1473A", + "A1474T", + "C1485A", + "G1487A", + "G1509A", + "A1523C", + "A1529G", + "C1553T", + "T1589G", + "C1622G", + "C1626T", + "G1673A", + "T1724C", + "G1799A", + "T1814A", + "G1835T", + "C1844T", + "G1868A", + "C1886A", + "G1889A", + "C1943T", + "G1971A", + "C1991T", + "A2087G", + "T2096C", + "A2099C", + "A2123G", + "A2174T", + "C2180T", + "T2198A", + "C2207A", + "G2216C", + "C2231A", + "C2234T", + "C2243T", + "T2246C", + "C2249T", + "C2288T", + "T2294C", + "G2330A", + "A2366G", + "A2372C", + "A2408G", + "T2432C", + "G2465A", + "G2474T", + "A2477C", + "C2507T", + "C2537T", + "A2594G", + "A2654G", + "G2660A", + "G2663A", + "C2684G", + "C2715T", + "T2720G", + "C2792A", + "G2810A", + "C2831T", + "G2897A", + "C2903T", + "C2909T", + "G2936T", + "C2948T", + "C2964A", + "A2969T", + "C3119T", + "G3149C", + "C3154T", + "A3176T", + "A3320G", + "C3321T", + "C3338G", + "G3341A", + "G3344A", + "C3350T", + "A3389C", + "C3395T", + "C3443T", + "G3452C", + "C3458T", + "A3464G", + "T3470G", + "T3476A", + "A3492T", + "A3497G", + "C3512T", + "A3533G", + "C3534T", + "A3538G", + "C3542T", + "T3560A", + "C3611T", + "G3655A", + "T3704C", + "T3719C", + "C3774T", + "C3779T", + "C3815T", + "A3863G", + "G3881A", + "C3959A", + "A4013C", + "A4022G", + "G4055T", + "C4058T", + "A4079G", + "C4139T", + "A4149C", + "A4150G", + "A4151C", + "C4197A", + "C4250T", + "A4256G", + "C4284T", + "G4295T", + "G4301A", + "C4319T", + "T4338A", + "G4346A", + "A4370T", + "A4421G", + "G4427A", + "C4433T", + "A4436C", + "C4454A", + "A4472G", + "G4481T", + "A4484T", + "G4514T", + "C4535T", + "G4565A", + "G4580A", + "G4586C", + "A4631G", + "G4661A", + "C4667T", + "A4700G", + "G4709C", + "T4740C", + "G4775A", + "T4778G", + "G4793A", + "C4808A", + "A4817C", + "T4833C", + "A4901G", + "T4919C", + "G4988A", + "T5009A", + "C5018T", + "A5024C", + "A5025C", + "C5088A", + "G5091A", + "A5092G", + "C5100T", + "T5141C", + "C5147T", + "A5156C", + "C5171G", + "G5184A", + "C5195G", + "G5200T", + "T5203C", + "C5211T", + "A5225G", + "T5253C", + "C5294T", + "A5303G", + "A5318T", + "A5319G", + "G5341A", + "T5349C", + "A5361G", + "G5373A", + "A5408T", + "G5453T", + "C5466A", + "T5484C", + "G5487A", + "A5499G", + "A5567T", + "T5573C", + "C5597G", + "C5603T", + "G5621A", + "C5642T", + "G5648A", + "A5702G", + "A5753G", + "T5764C", + "G5783T", + "A5795G", + "T5803A", + "G5805T", + "T5810C", + "C5849T", + "C5882T", + "A5940C", + "A5946G", + "T5963C", + "C6040T", + "G6041T", + "A6065C", + "G6080T", + "C6173T", + "G6176A", + "G6182T", + "A6185G", + "C6242G", + "C6248T", + "T6281C", + "T6302G", + "G6344A", + "A6347T", + "C6383T", + "A6425G", + "A6429T", + "C6431T", + "C6542T", + "C6551T", + "A6593T", + "C6608G", + "A6611G", + "C6615A", + "C6644A", + "T6659A", + "C6732T", + "A6749T", + "G6776A", + "G6857A", + "C6878T", + "T6884C", + "G6917C", + "A6953G", + "C6992T", + "C7022T", + "T7050C", + "A7082T", + "C7088T", + "A7115C", + "C7127T", + "C7193A", + "G7197A", + "A7198T", + "A7205C", + "C7214T", + "A7286G", + "A7298G", + "C7313T", + "G7322A", + "T7386C", + "T7387A", + "G7418T", + "C7469A", + "A7470C", + "G7479C", + "A7481T", + "G7502A", + "C7549T", + "T7599C", + "G7621T", + "C7661T", + "G7663A", + "G7714A", + "C7720T", + "C7782T", + "A7792G", + "C7846A", + "C7861T", + "G7883A", + "C7945T", + "C8038T", + "G8047T", + "T8056G", + "C8062G", + "G8086A", + "C8092T", + "A8095C", + "C8137A", + "C8155G", + "C8161T", + "A8176C", + "G8200A", + "A8212G", + "C8242A", + "G8266C", + "C8267A", + "T8308C", + "A8311G", + "T8314A", + "C8317T", + "T8350C", + "G8359A", + "C8365A", + "T8368A", + "G8383A", + "G8410T", + "A8431T", + "G8449T", + "C8461A", + "A8462G", + "A8463C", + "G8473A", + "G8480A", + "G8492A", + "G8498A", + "G8521A", + "C8581T", + "C8653G", + "G8668A", + "G8696A", + "A8734C", + "A8740G", + "A8749G", + "G8750A", + "A8756G", + "C8757T", + "G8768A", + "C8770T", + "A8771C", + "C8774T", + "A8787T", + "C8813T", + "G8854A", + "T8869A", + "A8923C", + "C8941T", + "T8962C", + "C8986T", + "C9019T", + "C9058G", + "A9061G", + "C9091T", + "A9092T", + "A9112T", + "A9123G", + "G9137T", + "G9154T", + "C9184G", + "G9190A", + "G9202T", + "G9233T", + "G9244C", + "G9295A", + "C9310A", + "A9337T", + "T9385A", + "T9394C", + "A9404C", + "T9409C", + "C9436T", + "C9451T", + "C9460G", + "G9463A", + "C9517T", + "A9535T", + "G9538A", + "G9550T", + "A9595T", + "A9613G", + "C9643T", + "C9667T", + "T9670C", + "G9707A", + "G9715A", + "C9751T", + "C9757T", + "G9799A", + "G9803T", + "G9826C", + "A9835G", + "G9877A", + "T9907C", + "G9910A", + "T9931C", + "A10063C", + "A10105G", + "C10124T", + "C10130T", + "C10174T", + "T10207C", + "T10214A", + "T10273C", + "G10306A", + "G10307A", + "G10309T", + "C10345A", + "T10366C", + "A10372T", + "A10378T", + "C10402T", + "A10417G", + "C10426G", + "C10429A", + "T10456A", + "C10465T", + "A10474C", + "G10475A", + "C10496T", + "C10655T", + "C10661T", + "G10696T", + "T10717C", + "T10768A", + "C10810T", + "C10832T", + "T10840C", + "C10856T", + "A10891G", + "T10906C", + "C10966T", + "A10999C", + "G11062T", + "A11074C", + "C11095T", + "A11104G", + "C11110T", + "T11134C", + "C11143T", + "A11233G", + "A11288G", + "A11333C", + "T11354C", + "A11363C", + "T11383C" + ], + "CP": [ + "V13A", + "A74V", + "A108T" + ], + "E1": [ + "Y72N", + "V103I", + "V159I", + "I430V" + ], + "E2": [ + "V45I", + "G63S", + "T65V", + "D69N", + "M70L", + "H71Y", + "E75V", + "T177S", + "Q187R", + "A192S", + "A224S", + "D249E", + "H299Q", + "Q324H", + "V382I", + "V414F" + ], + "E3": [ + "M21I", + "K26A", + "A32T", + "A36T", + "V38I" + ], + "nsP1": [ + "L162I", + "D353E", + "E403D", + "S466T", + "E477I", + "L481I", + "A489T" + ], + "nsP2": [ + "V108I", + "P439T", + "A502V", + "T615S", + "K630R", + "S669N", + "Q788H" + ], + "nsP3": [ + "K40R", + "S103T", + "K332Q", + "P353T", + "E354R", + "P357S", + "E375D", + "D380E", + "A385T", + "W390L", + "L391P", + "H394Y", + "F408L", + "M430V", + "S437N", + "T444A", + "V448I", + "P479T", + "*485Q", + "A486T", + "T490A" + ], + "nsP4": [ + "V21A", + "I34N", + "A35S", + "I80L", + "S82G", + "A113V", + "N243Y", + "E499I", + "F562H", + "K590Q", + "A593P" + ] + }, + "labels": { + "aa": "CP: V13A, A74V, A108T; E1: Y72N, V103I, V159I, I430V; E2: V45I, G63S, T65V, D69N, M70L, H71Y, E75V, T177S, Q187R, A192S, A224S, D249E, H299Q, Q324H, V382I, V414F; E3: M21I, K26A, A32T, A36T, V38I; nsP1: L162I, D353E, E403D, S466T, E477I, L481I, A489T; nsP2: V108I, P439T, A502V, T615S, K630R, S669N, Q788H; nsP3: K40R, S103T, K332Q, P353T, E354R, P357S, E375D, D380E, A385T, W390L, L391P, H394Y, F408L, M430V, S437N, T444A, V448I, P479T, *485Q, A486T, T490A; nsP4: V21A, I34N, A35S, I80L, S82G, A113V, N243Y, E499I, F562H, K590Q, A593P" + } + }, + "children": [ + { + "name": "NODE_0000089", + "node_attrs": { + "div": 0.9188200014141688, + "num_date": { + "value": 1973.2337407769635, + "confidence": [ + 1973.0268840856593, + 1973.3380718589094 + ] + }, + "country": { + "value": "Guyana", + "confidence": { + "Argentina": 0.004639150781084182, + "Brazil": 0.005336102351445996, + "French_Guiana": 0.010848090120733995, + "Guyana": 0.9611358955611687 + }, + "entropy": 0.25852892618376117 + }, + "year": { + "value": "1973", + "confidence": { + "1969": 0.013445722988776495, + "1972": 0.016432642380266583, + "1973": 0.6385445092057592, + "1977": 0.01212323942296317 + }, + "entropy": 2.030694227242925 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999984093379294 + }, + "entropy": 2.282816111657465e-05 + }, + "place_of_collection": { + "value": "Guyana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T19A", + "A30C", + "A31T", + "A33G", + "T44A", + "A53G", + "T65C", + "T77C", + "T95A", + "T96C", + "C110T", + "C113G", + "A143G", + "C146T", + "A200G", + "A209G", + "A269T", + "A299G", + "T325A", + "G336T", + "C338T", + "G341A", + "C342T", + "C362T", + "A365T", + "C371T", + "G374A", + "G389A", + "C401T", + "T407G", + "C422G", + "G428A", + "A479C", + "C480A", + "T488G", + "T491A", + "C494T", + "T506C", + "G509T", + "C515T", + "C524T", + "C527T", + "T530A", + "A539G", + "T545C", + "T551C", + "C584T", + "G590A", + "G608A", + "C611T", + "A635T", + "A653C", + "C707T", + "A711C", + "A713G", + "A737G", + "A743G", + "G752A", + "C779T", + "A794G", + "G833A", + "T887C", + "A908G", + "G911T", + "A926T", + "A941G", + "C1005T", + "C1007G", + "T1028C", + "C1031A", + "C1034T", + "C1037T", + "G1040T", + "G1052T", + "C1061T", + "C1073T", + "A1079T", + "T1080C", + "T1085A", + "T1097C", + "A1109G", + "T1178C", + "A1221C", + "A1232G", + "A1244G", + "C1281A", + "G1286A", + "C1289T", + "C1298T", + "A1319G", + "T1334C", + "G1361A", + "T1364C", + "C1407T", + "T1409G", + "T1412G", + "A1421T", + "T1422C", + "T1430G", + "G1436A", + "C1442T", + "G1445A", + "A1469G", + "T1474C", + "C1476A", + "A1478C", + "G1503A", + "A1509T", + "A1520T", + "C1523T", + "G1527A", + "C1535T", + "G1541A", + "T1553A", + "G1556A", + "G1562A", + "C1565T", + "C1568T", + "C1577T", + "G1589A", + "G1622A", + "C1625T", + "G1640A", + "T1652G", + "C1655A", + "T1664G", + "C1679T", + "C1694T", + "C1724G", + "G1727A", + "G1730T", + "T1736C", + "A1739G", + "C1742T", + "G1787A", + "A1790G", + "C1793T", + "C1796T", + "A1799T", + "A1811G", + "C1824A", + "C1826G", + "T1847C", + "T1874C", + "G1877T", + "T1916C", + "C1928T", + "A1934G", + "G1958A", + "T2024C", + "G2026A", + "C2027T", + "T2031C", + "G2048A", + "C2060T", + "G2063A", + "C2075T", + "T2093C", + "C2102G", + "A2106G", + "G2114A", + "A2120G", + "T2132C", + "G2156A", + "A2158G", + "C2162T", + "C2192T", + "A2213T", + "A2228C", + "A2231G", + "T2249G", + "C2252A", + "C2273T", + "C2291T", + "G2292A", + "A2318G", + "A2324C", + "G2326A", + "C2327T", + "C2345T", + "A2351C", + "A2357G", + "G2360A", + "G2378A", + "A2393G", + "T2411C", + "T2414C", + "G2429A", + "C2432G", + "C2435A", + "C2438T", + "A2450C", + "C2486T", + "G2492A", + "C2498T", + "C2504T", + "T2510C", + "C2597T", + "A2600G", + "C2603T", + "G2630A", + "A2632G", + "T2648C", + "A2660C", + "T2666C", + "C2678T", + "G2684A", + "A2690T", + "A2702G", + "T2705C", + "C2709T", + "A2714C", + "G2729A", + "A2738G", + "G2744A", + "C2745T", + "G2783T", + "A2792G", + "G2795A", + "A2798C", + "A2807G", + "G2813A", + "T2819C", + "C2822T", + "G2828A", + "C2858A", + "C2861T", + "A2863G", + "C2888T", + "T2891C", + "T2936C", + "A2945G", + "G2954T", + "A2959G", + "G2960A", + "A2964G", + "C2965T", + "C2966T", + "T2969C", + "T2975C", + "T2978C", + "C2984T", + "G2987A", + "A2993G", + "T3017C", + "A3038G", + "T3044C", + "G3048A", + "G3050A", + "C3059T", + "T3065C", + "G3077A", + "C3101A", + "A3104G", + "T3113C", + "C3125T", + "G3131A", + "G3132A", + "G3137C", + "G3140A", + "C3149T", + "T3152A", + "C3155T", + "T3167A", + "G3173A", + "C3179T", + "A3188G", + "A3191C", + "A3203G", + "G3206A", + "G3215A", + "T3236C", + "T3248C", + "T3251C", + "T3260C", + "G3266A", + "T3267C", + "T3272A", + "A3280G", + "C3287T", + "A3299G", + "T3302C", + "T3311C", + "C3317T", + "A3332C", + "A3341C", + "T3350A", + "C3351G", + "G3352T", + "A3353G", + "G3362T", + "C3369G", + "T3371C", + "G3378A", + "T3379C", + "G3380A", + "T3386A", + "T3395A", + "G3398C", + "C3401T", + "T3422A", + "T3425C", + "C3428T", + "C3437T", + "T3455C", + "G3463A", + "A3467G", + "T3473C", + "A3476G", + "T3477C", + "C3482T", + "T3491C", + "A3494G", + "C3506T", + "C3509T", + "G3519A", + "C3526T", + "G3545A", + "T3548A", + "A3560G", + "C3575T", + "C3581T", + "G3584T", + "T3590A", + "T3593C", + "C3605T", + "A3617G", + "T3632C", + "C3635T", + "G3638A", + "T3641C", + "C3644T", + "G3653A", + "C3656T", + "A3658G", + "T3677C", + "T3689C", + "A3698G", + "T3701C", + "C3710T", + "G3725A", + "C3743A", + "A3776G", + "T3782C", + "T3785C", + "T3788C", + "T3791A", + "T3800C", + "T3809C", + "C3812T", + "C3821T", + "A3830G", + "T3845C", + "A3851G", + "T3857C", + "C3875T", + "C3879A", + "T3898C", + "A3899T", + "A3914G", + "G3917A", + "A3923G", + "C3929T", + "A3949G", + "A3959G", + "T3965C", + "C3968A", + "G3977A", + "A3986C", + "T3987C", + "A4004C", + "C4007A", + "A4010G", + "C4031T", + "T4034C", + "T4046C", + "G4052A", + "T4058A", + "T4070C", + "C4085T", + "T4100A", + "A4115G", + "A4118G", + "T4124G", + "G4127T", + "A4136G", + "T4142C", + "A4162G", + "C4163T", + "C4170A", + "G4175A", + "G4193A", + "C4200T", + "G4202A", + "G4214A", + "A4217G", + "A4235T", + "A4241G", + "C4244G", + "G4259A", + "A4265G", + "A4289C", + "A4313G", + "C4316T", + "A4337G", + "C4340A", + "T4349A", + "G4355T", + "C4356T", + "A4364T", + "A4379G", + "A4385G", + "A4389C", + "C4394T", + "A4403T", + "A4406G", + "C4412T", + "C4413T", + "T4418C", + "A4424G", + "C4430T", + "A4442G", + "T4445C", + "C4457T", + "C4460T", + "A4479G", + "T4481C", + "T4484C", + "G4490A", + "C4517T", + "T4535G", + "C4547T", + "G4548A", + "A4550T", + "A4553G", + "T4559G", + "A4565T", + "G4568A", + "C4569T", + "A4601G", + "A4604G", + "A4609G", + "C4619T", + "T4640C", + "T4646C", + "G4649T", + "A4652G", + "G4676T", + "C4688T", + "T4694C", + "C4709T", + "C4718T", + "T4724G", + "G4730A", + "A4736C", + "T4748C", + "A4757G", + "C4772T", + "A4775T", + "G4778A", + "C4784T", + "C4787A", + "T4799A", + "G4805T", + "A4808G", + "G4829A", + "G4835A", + "T4847C", + "T4856C", + "A4865T", + "G4871A", + "A4895G", + "G4913T", + "C4917T", + "C4919G", + "C4920T", + "G4943A", + "G4949A", + "G4952A", + "G4962T", + "C4967T", + "C5003T", + "A5009G", + "C5028A", + "G5035A", + "A5037C", + "A5041T", + "G5046C", + "G5057T", + "A5065C", + "A5082G", + "G5083A", + "G5087C", + "C5089T", + "A5093C", + "G5102C", + "C5103T", + "T5104C", + "A5110T", + "T5112C", + "G5114T", + "A5120G", + "T5129A", + "A5130T", + "G5133A", + "T5135C", + "T5138C", + "A5149C", + "A5151G", + "C5156T", + "C5158G", + "A5162G", + "C5185T", + "G5206T", + "G5222A", + "G5226C", + "G5238A", + "T5241C", + "A5250C", + "A5260G", + "T5270A", + "T5288C", + "C5291T", + "T5294A", + "G5306A", + "T5318C", + "C5333T", + "T5339C", + "C5362A", + "A5376G", + "C5405T", + "T5408C", + "G5414A", + "A5417G", + "C5423T", + "C5432T", + "C5436T", + "G5447A", + "A5466G", + "A5473C", + "G5475A", + "C5489G", + "T5501C", + "C5504T", + "T5567C", + "G5568A", + "G5570A", + "C5576T", + "T5594A", + "G5597A", + "A5598C", + "T5603A", + "T5606C", + "T5607C", + "G5609T", + "T5615A", + "C5618T", + "A5627G", + "A5633G", + "C5645T", + "A5660G", + "C5666T", + "C5669T", + "C5708T", + "C5717T", + "A5729G", + "A5759G", + "A5762G", + "G5763A", + "A5774G", + "G5777A", + "G5780A", + "G5798A", + "A5802C", + "A5831G", + "A5840G", + "T5843A", + "T5844C", + "G5852A", + "G5858A", + "G5876A", + "T5915C", + "A5924G", + "T5942C", + "C5948T", + "C5952T", + "A5957G", + "C5958A", + "A5959G", + "T5960C", + "T5972A", + "T6000C", + "C6011T", + "T6015G", + "T6016A", + "A6023T", + "G6037A", + "T6041C", + "C6044T", + "G6047T", + "T6053G", + "A6056C", + "A6062T", + "G6063A", + "C6065T", + "G6083A", + "C6084T", + "G6089A", + "C6095T", + "G6108A", + "G6113A", + "A6128C", + "C6134T", + "G6155T", + "C6161A", + "T6167C", + "G6185T", + "T6188C", + "T6197A", + "A6203G", + "T6209C", + "G6221A", + "A6222C", + "T6234C", + "G6242A", + "C6245T", + "C6251T", + "A6254T", + "G6260A", + "G6263A", + "T6266A", + "T6269C", + "A6293G", + "A6299G", + "C6320T", + "T6323C", + "A6329C", + "C6342T", + "G6350T", + "C6365T", + "T6371C", + "A6374G", + "C6380T", + "G6386A", + "C6398T", + "A6424G", + "T6429C", + "A6440G", + "T6441C", + "T6446C", + "A6449G", + "G6458A", + "T6461C", + "A6482G", + "T6485C", + "G6494A", + "T6497C", + "C6518T", + "C6531T", + "T6533G", + "C6539T", + "C6545A", + "T6557C", + "T6566C", + "A6569G", + "G6581C", + "A6590G", + "C6599T", + "A6617G", + "C6620G", + "A6641G", + "A6644G", + "T6647C", + "A6659G", + "C6662T", + "G6674A", + "A6686G", + "G6689A", + "T6699C", + "A6701G", + "A6707G", + "C6714T", + "T6755C", + "T6761C", + "C6782T", + "A6785G", + "T6788C", + "G6791A", + "G6803A", + "C6815T", + "C6824T", + "C6839T", + "G6845A", + "A6851G", + "C6852T", + "A6857T", + "A6860T", + "C6869A", + "C6870T", + "A6875G", + "C6890T", + "A6892C", + "T6897C", + "G6905A", + "G6908A", + "A6914G", + "C6917T", + "A6929G", + "C6944T", + "T6959C", + "A6962G", + "C7004T", + "C7005T", + "T7016C", + "A7019G", + "T7025C", + "C7061T", + "T7076C", + "C7091T", + "C7094T", + "T7097C", + "A7112G", + "C7115T", + "G7116A", + "A7121G", + "G7124A", + "C7142T", + "G7145A", + "C7151T", + "G7154C", + "T7158C", + "A7172C", + "T7181C", + "T7198C", + "G7202A", + "G7208T", + "C7211T", + "C7220A", + "G7223C", + "C7230T", + "G7241A", + "C7247A", + "C7250T", + "G7253A", + "T7271C", + "C7284T", + "T7289C", + "C7295A", + "A7301G", + "A7304G", + "T7313A", + "T7319C", + "C7325T", + "T7328C", + "C7331T", + "C7340T", + "A7343G", + "C7347T", + "C7376T", + "T7391C", + "T7395C", + "G7406C", + "G7409A", + "T7418C", + "G7424A", + "C7427T", + "C7433T", + "G7436A", + "C7439T", + "G7442A", + "T7445C", + "T7464C", + "T7478C", + "C7479T", + "T7481C", + "C7493T", + "G7509C", + "T7549A", + "G7556C", + "C7560A", + "C7561A", + "C7573T", + "G7600A", + "C7612T", + "G7615T", + "C7622G", + "T7624G", + "T7645G", + "A7693G", + "A7725G", + "T7726C", + "A7727G", + "G7729C", + "C7730A", + "C7731T", + "A7737G", + "G7738C", + "A7744C", + "T7750A", + "G7753A", + "G7768A", + "A7816G", + "C7817A", + "C7821T", + "G7825A", + "A7835C", + "C7847G", + "A7849C", + "A7855T", + "C7862A", + "C7870T", + "A7871C", + "G7882A", + "C7885G", + "T7888C", + "T7897C", + "A7906G", + "A7909G", + "C7936T", + "T7948G", + "A7966G", + "G7973C", + "A7996C", + "C8011T", + "G8020A", + "C8035T", + "T8051G", + "C8053A", + "C8054T", + "C8061T", + "G8068A", + "C8084T", + "C8095T", + "T8101A", + "T8104C", + "G8109A", + "G8117T", + "C8125T", + "T8126C", + "C8134T", + "A8152G", + "G8155A", + "T8158C", + "T8164C", + "C8203T", + "G8206A", + "G8221A", + "G8227A", + "C8248T", + "C8252T", + "A8263G", + "C8272A", + "C8278T", + "A8290C", + "T8295C", + "G8296A", + "C8308A", + "A8337C", + "C8353A", + "A8356G", + "A8371G", + "C8374T", + "T8377C", + "A8392G", + "T8395C", + "A8402T", + "T8410C", + "C8416G", + "T8419C", + "G8425A", + "T8434C", + "A8443C", + "A8446G", + "C8467T", + "A8470C", + "C8503A", + "C8512T", + "G8527T", + "G8536A", + "A8542G", + "C8545T", + "C8548A", + "C8551T", + "A8574C", + "G8584A", + "G8587A", + "A8593G", + "T8596A", + "C8614A", + "G8626A", + "C8632A", + "T8635G", + "G8653A", + "A8672C", + "C8677T", + "C8680T", + "C8698T", + "C8699A", + "A8716T", + "T8735G", + "C8737A", + "G8740T", + "C8743T", + "C8804G", + "T8809C", + "A8812G", + "C8818T", + "A8824G", + "T8839C", + "T8848C", + "C8864T", + "A8878G", + "C8896T", + "A8907G", + "G8908A", + "C8929T", + "T8941G", + "C8956T", + "C8962A", + "C8989G", + "A8995G", + "C8998T", + "C9001A", + "A9002G", + "A9004G", + "G9013A", + "G9058A", + "G9070A", + "C9079T", + "G9085A", + "A9094G", + "C9095T", + "G9097A", + "C9109T", + "T9115C", + "A9136G", + "A9139T", + "A9145G", + "G9147A", + "C9151G", + "G9157A", + "C9163T", + "C9166T", + "T9172C", + "A9178G", + "G9184A", + "A9187T", + "A9198G", + "T9202C", + "A9208G", + "C9217T", + "A9226T", + "A9232C", + "A9235C", + "C9244T", + "C9250T", + "T9253C", + "C9286T", + "G9313C", + "C9314T", + "C9326T", + "T9331C", + "T9337C", + "C9343T", + "C9349T", + "A9352T", + "A9379G", + "G9382A", + "A9391G", + "C9397T", + "C9400T", + "A9406G", + "G9410A", + "G9418A", + "G9424A", + "G9433C", + "G9439A", + "C9454T", + "G9460A", + "A9469C", + "A9472G", + "C9481T", + "C9487T", + "G9490A", + "C9493T", + "A9506T", + "C9510T", + "A9523T", + "A9529G", + "T9535C", + "T9559C", + "C9562T", + "T9568C", + "G9571A", + "A9572C", + "C9577T", + "G9586A", + "C9601T", + "T9610C", + "C9622T", + "C9633T", + "C9655T", + "C9661T", + "G9664T", + "T9666C", + "T9667A", + "T9682C", + "A9691T", + "C9699T", + "C9703A", + "C9721T", + "G9727A", + "C9733T", + "G9760T", + "C9767T", + "C9772G", + "T9790A", + "G9793A", + "T9796C", + "C9797T", + "A9802G", + "C9806T", + "C9811T", + "T9823C", + "C9826T", + "C9838A", + "A9853G", + "C9856T", + "C9868T", + "C9878A", + "G9880C", + "C9886T", + "A9895G", + "C9896T", + "C9907A", + "G9926T", + "T9935C", + "C9946T", + "A9947C", + "G9958A", + "A10006G", + "T10032C", + "C10039G", + "G10042A", + "A10044T", + "C10057T", + "C10060T", + "C10072T", + "G10081A", + "C10083T", + "C10102A", + "A10114C", + "A10132G", + "A10139G", + "A10162G", + "T10168C", + "A10183G", + "C10204T", + "C10207A", + "G10213A", + "T10216C", + "A10228G", + "G10231A", + "C10240A", + "C10243T", + "G10249T", + "G10258T", + "A10270C", + "A10307C", + "T10309C", + "A10315C", + "G10327A", + "A10333T", + "G10360A", + "C10363T", + "T10372C", + "T10378C", + "C10387T", + "T10393G", + "C10397T", + "A10405C", + "G10423A", + "G10426A", + "A10435G", + "A10450T", + "A10456G", + "C10462T", + "C10471T", + "A10479G", + "T10486C", + "C10492T", + "C10501T", + "C10507T", + "C10513G", + "A10516G", + "C10523A", + "A10528G", + "C10543T", + "C10552A", + "C10555T", + "C10564T", + "G10585A", + "T10588C", + "A10591C", + "A10621G", + "C10624A", + "T10630C", + "G10651C", + "A10660G", + "A10674C", + "C10681A", + "C10687T", + "T10690C", + "G10723A", + "A10741G", + "A10744T", + "T10751C", + "C10759T", + "G10774A", + "C10777T", + "A10780G", + "T10783C", + "C10784T", + "C10795T", + "A10873T", + "T10897A", + "G10930T", + "C10933T", + "T10961A", + "G10963A", + "T10966G", + "C10984T", + "A11011G", + "T11027C", + "C11041A", + "G11050A", + "A11053C", + "C11074T", + "C11086T", + "G11092A", + "C11107A", + "T11117C", + "T11118A", + "C11137T", + "T11161A", + "A11178T", + "T11200C", + "A11230G", + "G11233T", + "G11248T", + "T11269C", + "A11278G", + "T11302C", + "A11319G", + "T11323C", + "A11332G", + "C11336T", + "G11352A", + "C11353T", + "C11354A", + "T11357A", + "C11364T", + "T11386C", + "A11391C" + ], + "6k": [ + "Q16N", + "V32L", + "M39L" + ], + "CP": [ + "P21A", + "D55G", + "T56A", + "P57M", + "E59G", + "P86T", + "T87M", + "S92R", + "P96A", + "Q101K", + "T104P", + "G138R", + "S164A", + "T167M", + "S183N", + "A186S", + "F189L", + "V245A", + "N259T" + ], + "E1": [ + "V11A", + "I13M", + "Y15F", + "A28V", + "I47V", + "I103L", + "K160R", + "N225T", + "H262Y", + "S321T", + "F373H", + "H393L", + "K440R" + ], + "E2": [ + "E4A", + "S58A", + "Q81E", + "K115R", + "T147A", + "S195N", + "N212S", + "E263D", + "V283I", + "T315S", + "T316I", + "T357I", + "I368T", + "T379I" + ], + "E3": [ + "M6L", + "D39E" + ], + "nsP1": [ + "K75N", + "F94Y", + "A98S", + "H146N", + "I462M", + "I477T", + "P478T", + "V487I", + "T489S", + "E492D", + "A495T" + ], + "nsP2": [ + "S126N", + "Y128H", + "T153A", + "K170R", + "A215T", + "G226D", + "K328R", + "N405S", + "K437R", + "T439V", + "A467T", + "A495T", + "E496D", + "D506E", + "N544S", + "E561D", + "R568V", + "P574A", + "V577T", + "L583F", + "R605K", + "A624T", + "A626V", + "E670G", + "V750A", + "K767R" + ], + "nsP3": [ + "N44S", + "L47M", + "T150A", + "V173I", + "K193R", + "P296S", + "A311S", + "P333T", + "S335N", + "T336P", + "E337V", + "A339P", + "E345A", + "R351E", + "T353M", + "R354S", + "L358S", + "E360V", + "S361P", + "T367S", + "A368T", + "E373A", + "T374A", + "T376S", + "T385M", + "R392L", + "E399Q", + "G403R", + "S404P", + "I407L", + "N410S", + "A444E", + "I449V", + "P469S", + "T479A", + "*481S", + "V482I", + "A513T" + ], + "nsP4": [ + "A21T", + "N34H", + "H86S", + "L105E", + "R112Q", + "V121I", + "A136T", + "K241R", + "Y243H", + "Q397P", + "V472I", + "I499T", + "P593S", + "V603L" + ] + }, + "labels": { + "aa": "6k: Q16N, V32L, M39L; CP: P21A, D55G, T56A, P57M, E59G, P86T, T87M, S92R, P96A, Q101K, T104P, G138R, S164A, T167M, S183N, A186S, F189L, V245A, N259T; E1: V11A, I13M, Y15F, A28V, I47V, I103L, K160R, N225T, H262Y, S321T, F373H, H393L, K440R; E2: E4A, S58A, Q81E, K115R, T147A, S195N, N212S, E263D, V283I, T315S, T316I, T357I, I368T, T379I; E3: M6L, D39E; nsP1: K75N, F94Y, A98S, H146N, I462M, I477T, P478T, V487I, T489S, E492D, A495T; nsP2: S126N, Y128H, T153A, K170R, A215T, G226D, K328R, N405S, K437R, T439V, A467T, A495T, E496D, D506E, N544S, E561D, R568V, P574A, V577T, L583F, R605K, A624T, A626V, E670G, V750A, K767R; nsP3: N44S, L47M, T150A, V173I, K193R, P296S, A311S, P333T, S335N, T336P, E337V, A339P, E345A, R351E, T353M, R354S, L358S, E360V, S361P, T367S, A368T, E373A, T374A, T376S, T385M, R392L, E399Q, G403R, S404P, I407L, N410S, A444E, I449V, P469S, T479A, *481S, V482I, A513T; nsP4: A21T, N34H, H86S, L105E, R112Q, V121I, A136T, K241R, Y243H, Q397P, V472I, I499T, P593S, V603L" + } + }, + "children": [ + { + "name": "MW809725.1", + "node_attrs": { + "div": 0.9299322414141687, + "num_date": { + "value": 2011.0013698630137, + "confidence": [ + 2011.0013698630137, + 2011.898904109589 + ] + }, + "author": { + "author": "Fischer,C., Pontier,D., Filippi-Codaccioni,O., Pons,J.B., Postigo-Hidalgo,I., Duhayer,J., Brunink,S. and Drexler,J.F.", + "value": "Fischer,C., Pontier,D., Filippi-Codaccioni,O., Pons,J.B., Postigo-Hidalgo,I., Duhayer,J., Brunink,S. and Drexler,J.F." + }, + "country": { + "value": "French_Guiana", + "confidence": { + "French_Guiana": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Trachops cirrhosus" + }, + "year": { + "value": "2011", + "confidence": { + "2011": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IIIB_TONV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "French_Guiana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C29A", + "C30A", + "G143T", + "A266G", + "T338C", + "A361G", + "G422A", + "A464G", + "T473C", + "C479T", + "T527C", + "C617A", + "C638T", + "T707C", + "G941A", + "C1190T", + "C1334T", + "C1340T", + "A1343G", + "G1412A", + "G1472A", + "T1567C", + "C1608T", + "T1730C", + "G1757A", + "T1796C", + "G1910A", + "T1991C", + "G2069A", + "G2102A", + "C2132T", + "G2158A", + "A2276T", + "A2492G", + "A2543G", + "T2546C", + "T2603C", + "C2612T", + "C2666T", + "A2750G", + "C2765T", + "C2816T", + "G2918A", + "C2921T", + "T3122C", + "C3221T", + "G3416A", + "T3443C", + "A3485C", + "T3557C", + "T3635A", + "A3638G", + "A3653G", + "T3710C", + "A3761G", + "C3827T", + "G3893T", + "C3975T", + "C3992T", + "T4232C", + "C4253T", + "A4259G", + "T4310C", + "A4391T", + "C4485T", + "C4543T", + "C4613T", + "A4643G", + "C4646T", + "T4709C", + "A4787G", + "A4823C", + "T4865C", + "T4917C", + "T5018C", + "A5061G", + "C5062T", + "G5085A", + "G5139A", + "G5148A", + "C5149T", + "C5234T", + "C5253T", + "C5272T", + "A5294G", + "G5322A", + "G5363T", + "G5376A", + "T5453C", + "T5472A", + "C5483T", + "G5523A", + "G5524A", + "G5562T", + "T5609C", + "G5672T", + "T5951C", + "C5960T", + "C6035T", + "A6038G", + "T6077C", + "C6143T", + "C6294T", + "T6320C", + "C6323T", + "C6359T", + "T6501C", + "T6767C", + "T6870C", + "C6892A", + "T6989C", + "T7055C", + "G7112A", + "T7211C", + "T7214C", + "T7268C", + "A7409G", + "T7439G", + "C7463T", + "A7469G", + "C7509G", + "C7556G", + "T7573C", + "G7717A", + "A7735G", + "A7768G", + "T7783C", + "G7792A", + "A7860G", + "A7866C", + "C7918T", + "C7973G", + "C7996T", + "C8044T", + "T8095C", + "A8119G", + "C8126T", + "C8170T", + "A8191G", + "T8194C", + "T8203C", + "A8314G", + "T8317C", + "C8419T", + "C8428T", + "C8434T", + "G8446A", + "A8503C", + "G8575A", + "C8623T", + "C8695T", + "T8698C", + "T8743C", + "C8839T", + "T8890C", + "T8929C", + "T8983C", + "C9027T", + "C9031T", + "A9085G", + "T9187A", + "A9211G", + "G9238A", + "T9286C", + "C9505G", + "C9559T", + "A9571G", + "G9574A", + "T9721C", + "A9790T", + "C9823T", + "T9868C", + "G9898A", + "C9901T", + "C9938T", + "T9952C", + "T10060C", + "A10081G", + "T10083C", + "A10102G", + "G10139A", + "T10204C", + "C10279T", + "C10336T", + "C10396T", + "G10456A", + "G10479A", + "C10600T", + "T10813C", + "G10915A", + "A10921G", + "G11089C", + "A11113G", + "T11137C", + "A11187G", + "T11287C", + "T11290C", + "C11302T", + "T11353C", + "C11417A", + "T11430G", + "T11434G", + "T11435C", + "C11444T" + ], + "CP": [ + "N100S", + "N102T", + "R138G", + "L189F" + ], + "E1": [ + "V28A", + "V47I", + "R160K", + "Q396R" + ], + "E2": [ + "A155V" + ], + "E3": [ + "E39D" + ], + "nsP1": [ + "D106G", + "I508T" + ], + "nsP2": [ + "R170K" + ], + "nsP3": [ + "A171V", + "S296P", + "T344V", + "A352T", + "A370T", + "A373I", + "L408F", + "P414L", + "D431N", + "E444D", + "V449I", + "S481T", + "G498K", + "V511L" + ], + "nsP4": [ + "P397Q", + "L603V" + ] + }, + "labels": { + "aa": "CP: N100S, N102T, R138G, L189F; E1: V28A, V47I, R160K, Q396R; E2: A155V; E3: E39D; nsP1: D106G, I508T; nsP2: R170K; nsP3: A171V, S296P, T344V, A352T, A370T, A373I, L408F, P414L, D431N, E444D, V449I, S481T, G498K, V511L; nsP4: P397Q, L603V" + } + } + }, + { + "name": "AF075254.1", + "node_attrs": { + "div": 0.9264028914141688, + "num_date": { + "value": 1973.9986301369863, + "confidence": [ + 1973.4473109599435, + 1973.9986301369863 + ] + }, + "author": { + "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", + "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." + }, + "country": { + "value": "Guyana", + "confidence": { + "Guyana": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1973", + "confidence": { + "1973": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IIIB_TONV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Guyana" + } + }, + "branch_attrs": { + "mutations": {} + } + } + ] + }, + { + "name": "NODE_0000090", + "node_attrs": { + "div": 0.9152073314141689, + "num_date": { + "value": 1954.917028375148, + "confidence": [ + 1954.8380529666324, + 1954.9713160448925 + ] + }, + "country": { + "value": "Argentina", + "confidence": { + "Argentina": 0.5907684749676567, + "Brazil": 0.40643211895047815 + }, + "entropy": 0.6999714740122935 + }, + "year": { + "value": "1954", + "confidence": { + "1954": 0.8043167751981, + "1971": 0.004598005169191372, + "1973": 0.005264011809265131, + "2014": 0.005992652105278292 + }, + "entropy": 1.2430211237821118 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999998908401 + }, + "entropy": 2.3615424548709918e-08 + }, + "place_of_collection": { + "value": "Argentina" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A28T", + "C29T", + "A98G", + "T221C", + "A285G", + "A298G", + "A305T", + "C326T", + "A329G", + "C353T", + "A377C", + "T378C", + "G380A", + "G386A", + "C426T", + "A437T", + "T443A", + "T462A", + "A464G", + "G485T", + "C560G", + "C566T", + "A572C", + "C599T", + "C620T", + "C638T", + "C644T", + "G650A", + "C657T", + "C702A", + "A716T", + "C717T", + "C722T", + "C755T", + "T758C", + "G759A", + "C770A", + "C791T", + "A806G", + "C815T", + "A854G", + "T905A", + "C935T", + "A947G", + "C968T", + "C1001T", + "C1055T", + "G1067A", + "G1100C", + "C1119T", + "G1136A", + "G1148A", + "T1160A", + "G1166A", + "G1184A", + "T1187C", + "C1190T", + "C1194T", + "A1214T", + "G1235A", + "A1244T", + "A1259G", + "G1268A", + "A1271G", + "G1274A", + "A1275C", + "C1301T", + "C1304T", + "G1310A", + "C1340T", + "C1346T", + "T1349C", + "C1355T", + "G1358A", + "A1367C", + "C1376T", + "C1388T", + "T1408C", + "G1417A", + "T1419A", + "G1427A", + "G1436T", + "A1443C", + "G1457A", + "T1496A", + "G1511A", + "C1526A", + "C1544T", + "A1546G", + "C1565A", + "G1574A", + "G1583A", + "T1586G", + "G1598A", + "G1604A", + "G1610A", + "T1619C", + "G1646C", + "A1649T", + "A1658C", + "C1668A", + "C1674T", + "C1688T", + "C1697T", + "A1703G", + "C1706T", + "C1712T", + "C1715T", + "C1718T", + "C1728T", + "A1733G", + "T1748G", + "C1749A", + "G1751A", + "G1757A", + "C1763G", + "G1778C", + "G1781T", + "C1805G", + "A1832T", + "A1838G", + "T1841G", + "G1871A", + "T1880C", + "C1883T", + "C1895T", + "A1901T", + "C1919T", + "G1937A", + "C1956T", + "C1961T", + "C1973T", + "C1976T", + "C2009T", + "G2026C", + "A2030G", + "A2042G", + "C2046T", + "C2054T", + "A2062G", + "G2081A", + "G2129A", + "G2150A", + "T2177A", + "A2186G", + "A2189T", + "A2255G", + "A2298G", + "C2300T", + "A2303C", + "C2328T", + "G2342A", + "T2375C", + "C2390T", + "A2417T", + "C2423T", + "A2426C", + "G2441T", + "C2453T", + "T2462A", + "T2522C", + "A2524G", + "T2534C", + "T2540C", + "C2564T", + "G2567A", + "C2573A", + "T2576C", + "T2606G", + "C2612T", + "A2633G", + "A2639C", + "C2642T", + "C2645T", + "A2651C", + "A2653G", + "C2681A", + "A2698G", + "G2699A", + "C2708T", + "G2711C", + "T2756C", + "G2801A", + "C2816T", + "T2850C", + "G2852A", + "C2859G", + "C2861A", + "C2864T", + "T2879C", + "G2885A", + "C2894T", + "G2918A", + "T2922C", + "T2927A", + "C2951T", + "C2981T", + "C2985T", + "T3011C", + "C3029T", + "T3030C", + "G3035A", + "A3037G", + "T3071C", + "C3074T", + "C3086T", + "G3089A", + "C3116A", + "T3126C", + "G3128A", + "G3150A", + "T3158A", + "T3161C", + "A3163G", + "G3164A", + "T3193C", + "A3197C", + "C3204T", + "C3209T", + "C3221T", + "G3227A", + "T3242G", + "A3254C", + "A3263G", + "G3278A", + "C3281T", + "C3293T", + "G3308C", + "C3326T", + "G3335A", + "T3337C", + "T3356C", + "A3374T", + "C3410T", + "G3416C", + "A3423G", + "G3434A", + "C3435T", + "G3438A", + "C3440T", + "A3446T", + "C3461G", + "C3482A", + "A3485G", + "G3490A", + "G3500A", + "C3503A", + "T3518G", + "G3521A", + "T3527C", + "T3530C", + "C3543A", + "T3566G", + "G3569A", + "A3570C", + "G3572A", + "C3578A", + "G3587A", + "C3589A", + "G3602A", + "A3610G", + "T3614C", + "C3623T", + "T3632G", + "C3647T", + "A3654C", + "G3659A", + "A3662G", + "T3692C", + "C3752T", + "C3756T", + "C3827T", + "A3828C", + "A3846G", + "C3861A", + "T3878C", + "G3893A", + "T3903A", + "T3904C", + "G3918A", + "G3920A", + "C3971T", + "C3975T", + "C3980T", + "T3983A", + "T3995C", + "C3998T", + "C4014T", + "G4016A", + "C4025A", + "A4028C", + "T4037A", + "G4049A", + "C4061T", + "C4073T", + "G4082A", + "C4085A", + "A4097C", + "A4118T", + "T4121G", + "C4181A", + "G4187C", + "T4190C", + "A4205T", + "A4217T", + "G4220A", + "C4223T", + "G4238A", + "C4253T", + "A4262G", + "G4268T", + "A4271T", + "A4280G", + "T4304A", + "C4307A", + "C4325T", + "A4337C", + "T4361G", + "C4367T", + "C4404T", + "C4439T", + "G4448A", + "C4466T", + "G4478A", + "A4503C", + "T4541C", + "G4544A", + "C4574A", + "G4577A", + "G4589A", + "C4592T", + "C4595G", + "A4623G", + "C4624T", + "T4628C", + "G4634A", + "C4647T", + "G4673A", + "C4697T", + "A4711C", + "T4712A", + "C4714T", + "A4715T", + "G4733A", + "A4754C", + "C4760T", + "A4802G", + "A4811T", + "T4820C", + "A4823G", + "C4832T", + "G4835C", + "C4838T", + "T4856G", + "T4889A", + "C4907T", + "C4916T", + "G4922A", + "G4934A", + "C4967G", + "T4994G", + "G4997A", + "T4998C", + "C5000T", + "A5026C", + "A5027G", + "C5029A", + "G5085A", + "C5086A", + "C5089G", + "A5096T", + "A5097C", + "C5101G", + "T5105G", + "T5107C", + "A5115C", + "A5116C", + "C5134T", + "A5142G", + "A5144C", + "C5145T", + "C5152T", + "A5153T", + "T5159C", + "A5165G", + "G5168A", + "T5209C", + "A5212G", + "G5229A", + "T5244C", + "A5259G", + "A5267C", + "G5273T", + "A5279C", + "C5309T", + "G5312A", + "C5315T", + "T5367C", + "T5369C", + "A5370C", + "C5372T", + "G5406A", + "T5411C", + "C5420T", + "C5431T", + "A5435G", + "C5464A", + "C5469T", + "G5474A", + "T5478G", + "A5481G", + "C5505T", + "G5564A", + "C5569T", + "C5574A", + "C5612G", + "T5624C", + "G5628A", + "A5629G", + "A5634G", + "G5678A", + "T5711C", + "T5720C", + "T5736C", + "G5747A", + "A5750T", + "A5792G", + "C5826T", + "G5829A", + "A5830T", + "A5837G", + "T5842G", + "C5867T", + "C5875A", + "A5891G", + "T5930C", + "T5942A", + "T5951A", + "C5964T", + "A5969G", + "A5970T", + "G5981A", + "C5990T", + "T6005C", + "T6008C", + "C6032T", + "A6038C", + "G6049A", + "A6071G", + "G6081A", + "G6086A", + "C6137T", + "C6140G", + "T6158C", + "C6170T", + "A6200C", + "C6212T", + "G6218T", + "C6227T", + "C6230T", + "G6275A", + "G6296A", + "A6308C", + "A6312C", + "A6314G", + "G6332A", + "T6362C", + "T6368C", + "A6389G", + "G6419A", + "C6422T", + "A6430G", + "C6467T", + "A6491G", + "A6509T", + "T6515C", + "G6554A", + "G6626A", + "C6632A", + "T6656C", + "C6666T", + "G6668A", + "C6677T", + "A6683T", + "C6695G", + "T6704C", + "C6710T", + "C6711T", + "T6719G", + "T6737C", + "T6746C", + "A6752G", + "C6773T", + "T6809C", + "G6818T", + "C6861T", + "G6881A", + "C6902T", + "C6906T", + "A6911T", + "T6923C", + "G6926A", + "C6947T", + "A6974T", + "A6977T", + "G6986A", + "A7011G", + "T7013G", + "C7028T", + "C7034T", + "T7049G", + "A7052C", + "T7055A", + "C7067A", + "A7068C", + "C7070G", + "A7073G", + "T7079C", + "C7106T", + "C7109T", + "C7118T", + "C7131T", + "A7169G", + "G7175A", + "C7178T", + "T7217C", + "C7226T", + "G7262T", + "T7268C", + "C7275T", + "A7304T", + "A7310G", + "A7343C", + "T7352G", + "G7358A", + "T7364C", + "G7379A", + "G7394A", + "G7397A", + "T7400C", + "T7421C", + "C7454T", + "T7460C", + "A7484G", + "A7490G", + "T7508A", + "G7511A", + "C7514T", + "A7525G", + "G7541A", + "C7577T", + "C7603T", + "T7618C", + "G7648A", + "C7654T", + "T7666C", + "G7690A", + "A7701G", + "C7703T", + "G7723A", + "G7732A", + "A7735C", + "G7762T", + "A7771T", + "G7774A", + "T7783A", + "A7784G", + "A7797T", + "G7804A", + "T7810C", + "T7840C", + "A7864G", + "T7867G", + "A7910C", + "C7918T", + "G7927A", + "T7933A", + "C7951T", + "A7952T", + "C7960T", + "C7969T", + "C7972T", + "G7987T", + "C7990T", + "C8005T", + "T8017C", + "A8026C", + "C8041A", + "C8044T", + "T8080C", + "G8107A", + "C8116A", + "G8143T", + "A8146G", + "C8149T", + "C8170T", + "A8218T", + "C8239T", + "G8254A", + "C8257T", + "C8260T", + "A8281T", + "T8293G", + "C8299T", + "G8302A", + "C8329T", + "C8362T", + "G8389A", + "C8407T", + "C8422T", + "A8440T", + "T8476C", + "T8477C", + "C8481T", + "A8482G", + "C8488T", + "T8491C", + "C8493A", + "C8494G", + "C8506T", + "G8509T", + "C8533A", + "T8537C", + "G8554A", + "C8566T", + "A8572G", + "C8576T", + "G8578A", + "C8602T", + "C8620T", + "C8623G", + "C8629T", + "C8638A", + "C8641T", + "T8644C", + "T8656C", + "C8659T", + "G8671A", + "G8674A", + "C8686T", + "G8701A", + "T8702A", + "G8728A", + "G8746T", + "C8767T", + "G8791A", + "A8792G", + "C8798T", + "A8806G", + "G8815A", + "A8824T", + "G8830T", + "T8833C", + "A8842T", + "C8845T", + "T8851C", + "C8857T", + "A8866C", + "A8881G", + "A8884C", + "T8893C", + "A8917C", + "C8926T", + "C8932T", + "T8935A", + "C8975T", + "G8977A", + "C8980T", + "T8983C", + "C8992A", + "C9010T", + "C9025T", + "T9028C", + "T9034C", + "G9043A", + "G9046A", + "T9076G", + "G9085T", + "A9094C", + "T9118G", + "C9148T", + "A9178C", + "A9181T", + "C9196A", + "A9209T", + "A9216G", + "G9220A", + "G9229A", + "G9238A", + "T9254C", + "A9256G", + "C9265T", + "G9274A", + "G9283A", + "A9298G", + "A9304G", + "A9322G", + "G9334A", + "C9340T", + "G9346T", + "C9361T", + "T9364C", + "G9367A", + "A9370T", + "C9371T", + "G9373A", + "A9379C", + "C9403T", + "C9408T", + "T9412A", + "C9415T", + "C9427T", + "C9442A", + "C9446T", + "A9475G", + "C9493A", + "C9505A", + "G9508A", + "A9529T", + "C9556T", + "A9589G", + "A9607G", + "C9655A", + "C9668T", + "T9674C", + "G9676A", + "G9704T", + "T9730G", + "C9740A", + "C9748T", + "C9752T", + "C9763T", + "A9802C", + "A9817G", + "T9823A", + "A9827C", + "G9829T", + "C9850A", + "C9859T", + "C9860T", + "C9862A", + "C9892T", + "T9919C", + "A9937G", + "G9958C", + "C10048T", + "C10084A", + "C10095T", + "C10096T", + "G10099A", + "G10106A", + "A10109C", + "A10123T", + "C10129T", + "G10135A", + "C10153T", + "C10163T", + "T10165A", + "C10176T", + "C10180T", + "G10210A", + "G10237A", + "C10246G", + "C10255T", + "A10276C", + "C10303G", + "C10312T", + "C10326T", + "C10336T", + "T10351C", + "T10357C", + "C10358T", + "C10375T", + "G10390A", + "C10396T", + "G10420A", + "A10432G", + "T10459G", + "A10460G", + "G10464A", + "C10477T", + "C10501A", + "C10522T", + "A10570G", + "A10582T", + "A10594G", + "A10597G", + "A10603G", + "C10623T", + "T10642C", + "G10657A", + "G10676A", + "C10678A", + "G10693T", + "A10711G", + "G10753A", + "A10762C", + "A10807G", + "T10813C", + "C10816A", + "G10819A", + "C10824T", + "C10852T", + "A10885G", + "C10886T", + "A10893G", + "C10918T", + "G10919A", + "T10920C", + "T10928A", + "A10994G", + "G11008T", + "A11023G", + "A11029G", + "T11035A", + "C11054A", + "T11065C", + "A11071G", + "A11079G", + "G11089A", + "C11099T", + "T11101G", + "A11113G", + "C11115A", + "T11117G", + "T11119A", + "T11122C", + "C11128T", + "A11164G", + "A11167G", + "A11173C", + "C11206A", + "T11209C", + "A11218T", + "C11240T", + "G11242A", + "C11254A", + "A11329G", + "A11340G", + "C11346A", + "A11358T", + "G11366A", + "A11380C" + ], + "CP": [ + "P6S", + "N47S", + "T75A", + "D79V", + "N102K", + "M131L", + "D160E", + "E194D" + ], + "E1": [ + "T32I", + "V36I", + "S59F", + "T109M", + "I154V", + "S155N", + "T208I", + "A226T", + "S275F", + "N298S", + "V307T", + "S310T", + "I332V", + "D345E", + "L352M", + "N360S", + "T372K", + "F373V" + ], + "E2": [ + "L47I", + "I77V", + "T216S", + "N218S", + "S282F", + "L369F", + "A381S", + "F389L" + ], + "E3": [ + "T32M", + "T36K" + ], + "nsP1": [ + "I81V", + "K85R", + "E111D", + "E131D", + "S140T", + "V239I", + "E400D", + "L455P", + "S458N", + "S459T", + "K501R", + "M513I" + ], + "nsP2": [ + "S126T", + "K138R", + "I217V", + "K292R", + "K335R", + "K350R", + "P404A", + "K463R", + "V501I", + "H503Q", + "K505R", + "V515A", + "V563A", + "S592G", + "R596C", + "V597I", + "R614H", + "D639E", + "M641L", + "T647N", + "N654S", + "N669H", + "I733V", + "L752T", + "V757I" + ], + "nsP3": [ + "E80D", + "T198V", + "N227T", + "A228V", + "H312Q", + "Y323H", + "Q332P", + "P333Q", + "A352K", + "T353R", + "M356L", + "S357W", + "L359P", + "N362P", + "A368V", + "T371A", + "P372S", + "T374I", + "L393S", + "Y394C", + "V400I", + "Y405H", + "N410D", + "C446R", + "S447R", + "V459I", + "T467I", + "T478K", + "P480S", + "*483E", + "S484G", + "A513V", + "R515S", + "E533R", + "R535G" + ], + "nsP4": [ + "E43I", + "I47S", + "P58Q", + "T90S", + "S116N", + "V127M", + "Y243C", + "I437V", + "N456Q", + "H550Q" + ] + }, + "labels": { + "aa": "CP: P6S, N47S, T75A, D79V, N102K, M131L, D160E, E194D; E1: T32I, V36I, S59F, T109M, I154V, S155N, T208I, A226T, S275F, N298S, V307T, S310T, I332V, D345E, L352M, N360S, T372K, F373V; E2: L47I, I77V, T216S, N218S, S282F, L369F, A381S, F389L; E3: T32M, T36K; nsP1: I81V, K85R, E111D, E131D, S140T, V239I, E400D, L455P, S458N, S459T, K501R, M513I; nsP2: S126T, K138R, I217V, K292R, K335R, K350R, P404A, K463R, V501I, H503Q, K505R, V515A, V563A, S592G, R596C, V597I, R614H, D639E, M641L, T647N, N654S, N669H, I733V, L752T, V757I; nsP3: E80D, T198V, N227T, A228V, H312Q, Y323H, Q332P, P333Q, A352K, T353R, M356L, S357W, L359P, N362P, A368V, T371A, P372S, T374I, L393S, Y394C, V400I, Y405H, N410D, C446R, S447R, V459I, T467I, T478K, P480S, *483E, S484G, A513V, R515S, E533R, R535G; nsP4: E43I, I47S, P58Q, T90S, S116N, V127M, Y243C, I437V, N456Q, H550Q" + } + }, + "children": [ + { + "name": "MK028853.1", + "node_attrs": { + "div": 0.9154155514141689, + "num_date": { + "value": 1954.9664962023628, + "confidence": [ + 1954.8756947284764, + 1955.0466176999382 + ] + }, + "author": { + "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", + "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." + }, + "country": { + "value": "Argentina", + "confidence": { + "Argentina": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1954", + "confidence": { + "1954": 0.7216762777157855, + "1971": 0.006526061852814929, + "1973": 0.007413291673267712, + "2014": 0.008386380502639136 + }, + "entropy": 1.656265928019034 + }, + "subtype": { + "value": "IIIA_MUCV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Argentina" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A555T", + "T5246A" + ], + "nsP1": [ + "R171*" + ], + "nsP3": [ + "H405Q" + ] + }, + "labels": { + "aa": "nsP1: R171*; nsP3: H405Q" + } + } + }, + { + "name": "NODE_0000091", + "node_attrs": { + "div": 0.9154435314141689, + "num_date": { + "value": 1954.9764004809977, + "confidence": [ + 1954.933334092891, + 1954.997829068302 + ] + }, + "country": { + "value": "Brazil", + "confidence": { + "Argentina": 0.2253822953143761, + "Brazil": 0.7728796350048249 + }, + "entropy": 0.5503523859310483 + }, + "year": { + "value": "1954", + "confidence": { + "1954": 0.8967078147246325, + "1971": 0.002432433169992857, + "1973": 0.002807319639084121, + "2014": 0.0032161105436247957 + }, + "entropy": 0.7274134456533493 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999956764231 + }, + "entropy": 8.759013718237923e-08 + }, + "place_of_collection": { + "value": "Brazil" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T554A", + "A7579C", + "C9027T" + ], + "E2": [ + "A155V" + ] + }, + "labels": { + "aa": "E2: A155V" + } + }, + "children": [ + { + "name": "MF993533.1", + "node_attrs": { + "div": 0.9199269514141689, + "num_date": { + "value": 2014.8945205479451, + "confidence": [ + 2014.8945205479451, + 2014.8945205479451 + ] + }, + "author": { + "author": "Araujo,P.A., Casseb,S.M., Ferreira,M.S., Silva,S.P., Silva,F.A., Martins,L.C., Chiang,J.O., Cruz,A.C.R. and Vasconcelos,P.F.C.", + "value": "Araujo,P.A., Casseb,S.M., Ferreira,M.S., Silva,S.P., Silva,F.A., Martins,L.C., Chiang,J.O., Cruz,A.C.R. and Vasconcelos,P.F.C." + }, + "country": { + "value": "Brazil", + "confidence": { + "Brazil": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Uranotaenia (Ura) geometrica" + }, + "year": { + "value": "2014", + "confidence": { + "2014": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IIIA_MUCV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Melga\u00e7o" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C5624G", + "A5632T", + "A5633T", + "A5689T", + "A5744T", + "A5785T", + "C5810G", + "A5832T", + "T8101C", + "T8362C", + "C8374T", + "T8377C", + "T8434C", + "G8527A", + "G8536A", + "C8548T", + "T8566C", + "T8620C", + "G8623T", + "T8686C", + "C8743T", + "T8767C", + "C8771A", + "T8794C", + "A8812T", + "T8857C", + "C8872T", + "C8920T", + "T8932C", + "T8980C", + "T9025C", + "C9041A", + "C9094T", + "T9172C", + "A9226G", + "C9244T", + "T9262C", + "A9283G", + "C9286T", + "T9331C", + "C9343T", + "A9442G", + "C9510T", + "A9544G", + "C9547T", + "C9562T", + "G9586A", + "G9625A", + "T9668C", + "C9688T" + ], + "E2": [ + "L70M", + "Q160K", + "T316I", + "F369L" + ], + "nsP3": [ + "K534I", + "Y553F" + ], + "nsP4": [ + "Q14H", + "E28V", + "Y36*", + "K44*" + ] + }, + "labels": { + "aa": "E2: L70M, Q160K, T316I, F369L; nsP3: K534I, Y553F; nsP4: Q14H, E28V, Y36*, K44*" + } + } + }, + { + "name": "AF075253.1", + "node_attrs": { + "div": 0.9155328114141689, + "num_date": { + "value": 1954.9986301369863, + "confidence": [ + 1954.959810777426, + 1954.9986301369863 + ] + }, + "author": { + "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", + "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." + }, + "country": { + "value": "Brazil", + "confidence": { + "Brazil": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1954", + "confidence": { + "1954": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IIIA_MUCV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Brazil" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T9115A" + ], + "E2": [ + "S184R" + ] + }, + "labels": { + "aa": "E2: S184R" + } + } + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000092", + "node_attrs": { + "div": 0.7434180214141688, + "num_date": { + "value": 1937.5828249845522, + "confidence": [ + 1934.5429430697006, + 1939.4524120661824 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Argentina": 0.0883444360365455, + "Brazil": 0.09653024330176849, + "Guyana": 0.05969823371432172, + "Peru": 0.3294640757449155 + }, + "entropy": 2.425200272928345 + }, + "year": { + "value": "1997", + "confidence": { + "1971": 0.022222499291115937, + "1973": 0.022086596524473697, + "1997": 0.022438000681445098, + "2017": 0.02217991158475356 + }, + "entropy": 3.849826968910072 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999505659465906 + }, + "entropy": 0.0005395650936185674 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T161C", + "C188T", + "C228T", + "C251T", + "T263C", + "T281C", + "T302C", + "T356C", + "A365C", + "A377G", + "A437C", + "A464T", + "C467T", + "A512G", + "A548G", + "T554G", + "C647T", + "A653G", + "C677T", + "C686T", + "C785T", + "A1079C", + "T1175C", + "G1265A", + "G1292A", + "G1397A", + "C1415T", + "A1416T", + "A1439G", + "G1472A", + "C1502T", + "A1514G", + "G1559A", + "C1572T", + "G1583C", + "G1709A", + "T1754C", + "T1792C", + "A1802C", + "C1808T", + "C1913T", + "T1922C", + "C1935A", + "A1979C", + "T2036A", + "T2051C", + "A2065G", + "A2066G", + "T2072C", + "A2084C", + "C2115T", + "G2117A", + "C2154T", + "G2159A", + "T2177C", + "A2183G", + "A2189G", + "A2256C", + "A2285G", + "A2303G", + "T2348C", + "A2351T", + "T2411G", + "C2435T", + "T2447C", + "A2554G", + "C2681T", + "G2711T", + "C2765T", + "G2783A", + "G2814A", + "C2855T", + "G2870A", + "G2987C", + "C3014T", + "A3022G", + "T3047G", + "C3053T", + "A3109G", + "A3134G", + "A3197T", + "A3212C", + "G3233A", + "T3272G", + "A3332G", + "G3365A", + "T3396C", + "C3435A", + "A3446C", + "C3489A", + "T3491G", + "T3518A", + "T3524C", + "T3548C", + "C3551T", + "C3600T", + "A3608G", + "A3731G", + "A3759G", + "C3842T", + "T3854G", + "G3893T", + "T3956C", + "G3989A", + "A4004T", + "T4019C", + "T4064A", + "C4067T", + "C4073A", + "T4103C", + "A4130C", + "A4136C", + "G4157T", + "C4166T", + "C4178A", + "A4196C", + "G4202T", + "C4277T", + "A4292C", + "T4304G", + "T4349C", + "A4379T", + "G4548C", + "T4549A", + "A4643G", + "G4649C", + "T4658A", + "G4676A", + "T4682C", + "T4694A", + "G4721A", + "T4727C", + "C4787T", + "T4881G", + "C4940A", + "T4970C", + "A4973C", + "A5027T", + "T5039C", + "C5077A", + "G5083C", + "A5093T", + "A5097G", + "C5101A", + "T5138A", + "A5151C", + "A5155T", + "A5172T", + "G5186T", + "T5209A", + "C5219G", + "C5248A", + "C5300T", + "C5309A", + "G5321A", + "G5348A", + "G5368T", + "A5370G", + "G5482T", + "T5495A", + "G5507T", + "A5565C", + "C5657T", + "G5672T", + "G5756A", + "G5777T", + "A5841G", + "T5842C", + "G5885A", + "T5894C", + "C5900T", + "G5912A", + "G5954C", + "G6002A", + "T6020C", + "A6071T", + "T6098C", + "A6101T", + "C6119T", + "G6155A", + "T6197G", + "C6230A", + "A6257G", + "G6263T", + "T6351C", + "T6356C", + "T6392C", + "T6401C", + "T6446A", + "A6449C", + "G6488T", + "A6552C", + "G6554C", + "T6560C", + "G6623A", + "A6650G", + "C6687T", + "G6698A", + "A6713G", + "G6716C", + "C6722T", + "T6767C", + "C6773G", + "G6818C", + "G6863A", + "A6893G", + "G6896A", + "A6956G", + "T6971C", + "A6974G", + "C7040T", + "C7091A", + "G7130A", + "C7151A", + "C7229T", + "C7247T", + "T7259C", + "G7265A", + "C7350T", + "T7352C", + "A7361G", + "G7362A", + "C7433A", + "G7474A", + "C7487T", + "G7496A", + "T7538C", + "C7567T", + "T7570A", + "C7578A", + "G7672A", + "G7675A", + "G7690T", + "A7797G", + "C7884T", + "A8008G", + "G8020T", + "T8122C", + "T8194C", + "C8236T", + "G8254C", + "A8269T", + "G8284A", + "G8287T", + "A8443G", + "A8464G", + "A8483C", + "G8485A", + "G8536T", + "G8626C", + "A8662C", + "G8673A", + "G8683A", + "A8710T", + "A8713C", + "G8744T", + "C8825A", + "A8953G", + "A8971G", + "C8989T", + "T9028A", + "T9049C", + "C9067T", + "A9211C", + "A9235T", + "G9247T", + "A9301G", + "A9325G", + "G9355C", + "G9389A", + "T9445C", + "A9469T", + "A9544G", + "A9592C", + "T9631C", + "T9634A", + "G9649A", + "A9697G", + "T9728C", + "T9730C", + "A9742C", + "T9744C", + "C9764A", + "C9973G", + "C10084T", + "A10091G", + "A10144G", + "C10147T", + "C10177T", + "C10189T", + "G10249A", + "G10258C", + "C10291T", + "T10294A", + "C10303T", + "G10346A", + "T10348A", + "G10411T", + "C10543A", + "G10573A", + "A10579G", + "T10633C", + "C10648T", + "G10658A", + "C10684A", + "A10711T", + "A10740G", + "A10747T", + "G10787A", + "C10798G", + "C10837A", + "C10849A", + "A10921G", + "T10973G", + "A11029C", + "G11116C", + "T11158C", + "C11170T", + "G11176A", + "A11332C", + "A11347G", + "T11365C", + "T11419C" + ], + "CP": [ + "P6Q", + "D79G", + "A108V" + ], + "E1": [ + "I31V", + "A116T", + "V220I", + "K247R", + "V263M", + "S325A", + "L343F" + ], + "E2": [ + "R37K", + "V61L", + "V276I", + "F389L", + "V394A" + ], + "E3": [ + "M33L" + ], + "nsP1": [ + "E131D", + "S458C", + "M513I" + ], + "nsP2": [ + "V48A", + "D129E", + "K139R", + "E145D", + "I218M", + "Q302R", + "V389I", + "K458R", + "K487R", + "R596S", + "T704A" + ], + "nsP3": [ + "E87D", + "V173Q", + "S284A", + "K332N", + "T349K", + "R351T", + "E354D", + "M356V", + "P357Q", + "T374P", + "E375V", + "T381S", + "L393*", + "A406E", + "M430I", + "C446F", + "S447G", + "S484I", + "T512P" + ], + "nsP4": [ + "I47A", + "E249D", + "H550Y", + "A554T", + "S591N" + ] + }, + "labels": { + "aa": "CP: P6Q, D79G, A108V; E1: I31V, A116T, V220I, K247R, V263M, S325A, L343F; E2: R37K, V61L, V276I, F389L, V394A; E3: M33L; nsP1: E131D, S458C, M513I; nsP2: V48A, D129E, K139R, E145D, I218M, Q302R, V389I, K458R, K487R, R596S, T704A; nsP3: E87D, V173Q, S284A, K332N, T349K, R351T, E354D, M356V, P357Q, T374P, E375V, T381S, L393*, A406E, M430I, C446F, S447G, S484I, T512P; nsP4: I47A, E249D, H550Y, A554T, S591N" + } + }, + "children": [ + { + "name": "AF075255.1", + "node_attrs": { + "div": 0.9358639014141688, + "num_date": { + "value": 1971.9986301369863, + "confidence": [ + 1971.4992408966584, + 1971.9986301369863 + ] + }, + "author": { + "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", + "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1971", + "confidence": { + "1971": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IIIC_MUCV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Yavari" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T19A", + "A27G", + "C29A", + "A30T", + "T44C", + "A53G", + "G74A", + "T77C", + "C140T", + "T149C", + "T185A", + "A200G", + "A209G", + "A305G", + "A308G", + "C311T", + "T332C", + "G341A", + "G344C", + "G386A", + "A395T", + "G398A", + "C399T", + "C401G", + "T452C", + "T462A", + "C470T", + "T488C", + "C503T", + "T506C", + "G509A", + "C521A", + "A555C", + "C575T", + "T590C", + "T593C", + "G608C", + "C611G", + "A623G", + "A689G", + "C702A", + "A713G", + "G719A", + "A723G", + "T725C", + "A729C", + "G731A", + "T740C", + "G752T", + "T776A", + "C782T", + "A797G", + "A947G", + "G1004A", + "C1037T", + "G1040T", + "G1052A", + "C1056T", + "A1109T", + "G1118A", + "C1139T", + "C1154T", + "T1160A", + "A1196G", + "A1199G", + "A1202G", + "G1205C", + "G1223A", + "T1229A", + "C1238T", + "A1241G", + "G1270A", + "A1271G", + "G1277A", + "C1280T", + "C1304T", + "T1313C", + "T1334A", + "A1343G", + "C1352T", + "C1361T", + "T1364C", + "A1373T", + "C1407T", + "T1409A", + "T1430C", + "G1438A", + "A1463G", + "A1471G", + "C1476G", + "A1481C", + "T1484G", + "A1491T", + "T1493C", + "A1508T", + "A1520G", + "C1526A", + "C1535T", + "G1538A", + "A1566G", + "C1568T", + "A1571G", + "T1586C", + "G1604T", + "T1619C", + "C1622T", + "C1625T", + "G1640A", + "G1646A", + "T1652C", + "C1679T", + "T1685C", + "C1688T", + "C1691T", + "C1697G", + "C1715A", + "T1721C", + "G1727T", + "A1733G", + "C1742A", + "T1748C", + "G1751T", + "C1763T", + "A1772C", + "G1781A", + "A1790G", + "C1805T", + "G1809T", + "A1832C", + "T1847C", + "C1850T", + "A1853G", + "C1862G", + "T1865A", + "T1880C", + "G1898A", + "A1901G", + "A1934G", + "C1967T", + "A1974C", + "A1982G", + "C1985A", + "T1986C", + "A2000G", + "A2012G", + "C2018T", + "C2027T", + "A2039G", + "C2045T", + "G2063A", + "T2093A", + "A2108T", + "T2111A", + "G2156A", + "G2168A", + "A2171C", + "A2174G", + "A2186G", + "A2210G", + "A2213T", + "G2216A", + "G2219A", + "T2222C", + "C2231T", + "A2276G", + "A2319C", + "C2327T", + "G2342A", + "C2423T", + "G2429C", + "C2436A", + "C2438A", + "T2462G", + "A2471C", + "G2489T", + "T2546C", + "C2549T", + "C2553A", + "G2555A", + "C2561T", + "C2570T", + "T2579C", + "G2582A", + "T2588A", + "A2594T", + "C2612G", + "T2621C", + "A2651T", + "G2660T", + "A2685T", + "T2687C", + "T2696C", + "G2699A", + "G2703A", + "G2717A", + "A2732C", + "G2741A", + "G2744A", + "T2753C", + "C2759T", + "G2762A", + "G2780T", + "A2786G", + "C2789T", + "C2805A", + "G2813A", + "C2822A", + "A2834G", + "C2837T", + "C2849T", + "C2883T", + "C2921T", + "T2927G", + "A2930T", + "T2933C", + "G2936A", + "G2954C", + "C2964T", + "C2972T", + "A2976T", + "T2978G", + "C2981T", + "C2984T", + "T3008C", + "G3023A", + "C3029T", + "T3041C", + "G3056C", + "A3068G", + "C3086T", + "A3095G", + "A3098G", + "C3101T", + "A3104G", + "G3110A", + "T3113G", + "G3131T", + "G3137A", + "A3163G", + "C3170T", + "C3179T", + "G3182T", + "A3185G", + "A3194G", + "A3203G", + "C3209T", + "G3215C", + "C3218T", + "C3221T", + "G3227C", + "T3230C", + "T3236C", + "A3239T", + "T3242C", + "T3243C", + "T3248C", + "T3251A", + "T3260C", + "A3277G", + "T3296C", + "A3299G", + "A3320T", + "G3329A", + "G3344C", + "C3345T", + "T3347G", + "T3348G", + "C3359T", + "G3362A", + "A3374G", + "C3401T", + "T3407C", + "G3416T", + "C3417T", + "T3425C", + "C3437T", + "T3476C", + "C3503T", + "G3505C", + "C3506T", + "T3515C", + "G3536A", + "C3552T", + "T3557C", + "G3558A", + "G3569A", + "A3573C", + "C3575T", + "C3581A", + "C3596T", + "A3610G", + "C3626T", + "T3630C", + "C3631A", + "C3636T", + "T3641C", + "C3644A", + "C3665T", + "T3683C", + "T3689C", + "G3690A", + "T3691C", + "C3693A", + "A3698C", + "C3716T", + "G3722A", + "G3740A", + "C3743A", + "G3746A", + "G3758T", + "C3773T", + "T3782A", + "A3807G", + "T3809C", + "C3818A", + "A3824G", + "A3830G", + "A3846G", + "C3848G", + "A3851G", + "T3857A", + "A3860T", + "G3866A", + "G3872A", + "C3875T", + "A3899C", + "G3908A", + "G3917A", + "G3938C", + "C3945A", + "G3947A", + "T3965C", + "C3968T", + "C3975T", + "G3977A", + "T3983C", + "A3986C", + "T3987C", + "C3992A", + "A4012G", + "C4014T", + "C4025A", + "A4028G", + "T4034C", + "C4040T", + "G4052A", + "C4053A", + "T4088C", + "C4094T", + "A4097G", + "C4106T", + "G4108A", + "G4127A", + "T4142A", + "G4160A", + "C4163T", + "C4169T", + "G4187C", + "G4193A", + "G4199A", + "C4213G", + "C4216T", + "C4226A", + "C4244T", + "T4247C", + "A4252G", + "A4265G", + "A4283G", + "T4310G", + "A4313G", + "A4317C", + "C4319A", + "C4334T", + "C4335A", + "C4340T", + "G4355A", + "A4364G", + "T4373C", + "C4376G", + "A4381G", + "C4382T", + "A4385G", + "A4389C", + "C4413T", + "T4418G", + "A4424T", + "T4425C", + "C4430T", + "A4442T", + "A4461C", + "G4469A", + "G4481A", + "C4485T", + "A4493G", + "A4499T", + "A4502G", + "G4505A", + "A4508G", + "G4514C", + "T4529C", + "A4550G", + "C4552T", + "A4556G", + "T4559A", + "C4562T", + "C4569T", + "G4577A", + "C4613T", + "T4616C", + "T4628C", + "A4631C", + "G4634A", + "A4637C", + "T4640C", + "T4646C", + "T4664C", + "G4670A", + "C4688G", + "G4691A", + "A4715T", + "A4716G", + "C4745T", + "T4748A", + "A4754T", + "A4757G", + "C4772T", + "C4773A", + "T4790G", + "A4814T", + "G4819A", + "G4826A", + "G4829C", + "T4833A", + "C4841T", + "A4853G", + "A4862C", + "C4880G", + "T4886C", + "T4889C", + "G4892A", + "A4898T", + "G4910A", + "G4913A", + "C4937T", + "G4943T", + "G4946A", + "G4949A", + "C5000T", + "G5015A", + "T5021C", + "C5036A", + "C5038G", + "G5043A", + "A5044C", + "A5076C", + "A5078G", + "G5085C", + "C5086T", + "G5099C", + "G5139T", + "C5143T", + "A5150G", + "A5153T", + "A5156G", + "T5159A", + "C5160T", + "A5161C", + "A5162G", + "A5163G", + "C5164T", + "A5165T", + "G5166A", + "A5167C", + "G5168A", + "C5174T", + "A5175T", + "G5177A", + "A5181G", + "C5185T", + "A5192G", + "C5194G", + "T5197C", + "T5207A", + "G5210A", + "T5215C", + "A5228G", + "A5250G", + "C5261T", + "T5270C", + "G5292A", + "T5349A", + "G5357A", + "C5360T", + "T5367C", + "A5402G", + "C5405A", + "G5406A", + "G5414A", + "A5417T", + "C5423T", + "T5427A", + "T5428C", + "A5438T", + "T5472C", + "G5475A", + "T5476C", + "A5481G", + "G5498A", + "T5501A", + "C5504A", + "C5566G", + "G5568A", + "C5574T", + "A5600G", + "T5607C", + "C5612T", + "A5632G", + "G5651A", + "C5669T", + "C5690T", + "A5693T", + "A5759G", + "C5766T", + "C5771T", + "G5775A", + "G5780A", + "G5789A", + "T5804A", + "A5828G", + "G5858A", + "T5862G", + "A5873G", + "G5876T", + "C5888T", + "A5897G", + "A5921G", + "A5934C", + "A5935G", + "T5960C", + "A5968G", + "C5971G", + "A5975G", + "A5978G", + "C5990T", + "T6005C", + "T6008G", + "G6017A", + "A6023T", + "C6029T", + "A6033G", + "G6047A", + "T6050C", + "A6056T", + "G6063A", + "A6068G", + "T6077C", + "G6078A", + "G6092A", + "G6107A", + "T6110G", + "A6128G", + "C6161A", + "T6167A", + "T6174C", + "G6218A", + "G6221A", + "C6245T", + "A6254C", + "G6260A", + "T6278C", + "T6282C", + "T6302A", + "C6305A", + "T6326C", + "A6338G", + "G6341A", + "G6353A", + "C6359A", + "C6380T", + "A6389G", + "A6395G", + "C6398T", + "T6410C", + "A6416C", + "A6428G", + "T6434C", + "A6443G", + "T6455C", + "T6464C", + "T6470C", + "T6473C", + "A6476G", + "T6477C", + "T6497C", + "T6500C", + "T6501C", + "T6506C", + "A6512G", + "C6521T", + "T6524C", + "C6545G", + "A6573C", + "A6575G", + "A6590T", + "A6593C", + "T6596C", + "C6599A", + "C6620T", + "A6641G", + "C6644T", + "C6665T", + "C6671T", + "C6677A", + "G6689A", + "A6707C", + "C6740T", + "T6770C", + "T6788A", + "G6791A", + "A6795T", + "T6797G", + "G6800A", + "T6801C", + "G6803T", + "T6809A", + "G6821C", + "T6827C", + "C6869T", + "G6872T", + "C6890T", + "G6899A", + "G6908T", + "A6920T", + "G6926T", + "C6938G", + "C6947A", + "C6950G", + "T6989A", + "T7001C", + "C7004T", + "A7019C", + "T7031C", + "C7067T", + "T7076C", + "C7094G", + "C7100T", + "C7109A", + "C7118T", + "C7139T", + "G7145A", + "T7158C", + "A7169G", + "T7181A", + "A7190G", + "A7196C", + "A7205G", + "G7208A", + "C7220A", + "G7232A", + "A7256G", + "A7286C", + "C7307A", + "A7310C", + "G7311A", + "T7319C", + "T7328C", + "A7343T", + "T7346G", + "C7347T", + "C7376T", + "C7388T", + "A7415G", + "A7430G", + "G7436A", + "C7439T", + "A7448C", + "A7449G", + "C7463G", + "A7471G", + "G7472A", + "T7475C", + "A7484G", + "G7544A", + "C7573T", + "T7584A", + "A7588T", + "G7598A", + "C7603T", + "T7604C", + "G7615C", + "T7618C", + "T7624A", + "C7642T", + "C7657T", + "C7660T", + "G7681A", + "A7693T", + "C7702T", + "G7724A", + "A7725G", + "G7732T", + "A7744G", + "T7750C", + "A7755G", + "G7768A", + "C7793A", + "T7798C", + "G7804A", + "A7806G", + "G7807A", + "A7815C", + "A7816T", + "G7822A", + "A7834G", + "A7835G", + "A7838C", + "A7839C", + "G7841A", + "A7843T", + "C7854A", + "A7855G", + "A7858G", + "A7864G", + "T7867C", + "G7869A", + "C7870T", + "A7871C", + "C7873G", + "C7885T", + "T7888C", + "A7903G", + "G7924A", + "A7942G", + "A7963C", + "A7966G", + "T7981A", + "G7987A", + "T8032C", + "C8045T", + "G8047A", + "G8059A", + "C8062A", + "C8074T", + "T8101C", + "G8107A", + "G8109A", + "C8110T", + "C8116G", + "A8119C", + "C8125T", + "A8152G", + "T8188C", + "G8197A", + "G8206C", + "A8224G", + "A8233C", + "C8257T", + "A8263G", + "A8305C", + "T8318C", + "C8323T", + "C8329G", + "A8341C", + "A8357C", + "A8358G", + "T8395C", + "C8407T", + "C8416A", + "C8428T", + "C8437T", + "A8438G", + "A8440C", + "A8446G", + "C8488T", + "G8498C", + "C8512A", + "T8515C", + "T8522C", + "C8533T", + "A8542G", + "C8548T", + "C8551A", + "G8553A", + "G8554A", + "C8602A", + "T8610C", + "G8611A", + "C8638T", + "C8653T", + "A8665G", + "A8704G", + "A8716G", + "T8726C", + "C8732T", + "C8752A", + "T8758A", + "A8771G", + "T8776A", + "C8779T", + "A8788G", + "T8794C", + "A8797G", + "C8798T", + "T8809C", + "A8821T", + "G8830C", + "T8839C", + "C8872T", + "T8890C", + "G8918A", + "C8922T", + "C8926T", + "C8929G", + "G8938A", + "G8950A", + "C8956T", + "T8962G", + "G8982A", + "C8998T", + "A9004C", + "A9007G", + "G9013C", + "C9025T", + "G9026A", + "C9041A", + "G9052T", + "C9073T", + "A9092G", + "G9097A", + "C9103A", + "C9109T", + "A9112G", + "C9122A", + "A9127G", + "A9130C", + "A9133T", + "A9136T", + "C9148T", + "C9151T", + "C9152T", + "T9153C", + "G9157C", + "G9182A", + "A9187T", + "C9193T", + "A9205C", + "C9214T", + "A9215T", + "A9216C", + "C9217T", + "A9226C", + "A9232T", + "G9274A", + "A9276T", + "A9298G", + "G9308A", + "G9334A", + "C9349G", + "A9352G", + "C9361T", + "A9370G", + "A9379T", + "C9403T", + "G9424T", + "C9431A", + "C9454T", + "C9461T", + "G9464A", + "A9472G", + "C9481T", + "C9487T", + "C9493G", + "A9499G", + "T9511G", + "G9565A", + "T9568C", + "G9574A", + "C9577T", + "A9595C", + "C9601G", + "A9602G", + "T9610C", + "A9613C", + "C9622T", + "C9652T", + "T9682C", + "C9700G", + "C9703T", + "A9709G", + "C9712A", + "C9718T", + "G9736A", + "A9745C", + "T9746A", + "C9752T", + "C9757A", + "G9760A", + "A9766G", + "G9769A", + "A9783G", + "A9787G", + "G9808T", + "C9814T", + "A9817G", + "G9820A", + "A9821G", + "C9838G", + "C9850A", + "C9856T", + "C9868T", + "T9871C", + "T9874C", + "G9880A", + "C9901T", + "C9913T", + "G9916A", + "T9922C", + "T9931G", + "C9934T", + "A9947C", + "T9961G", + "A10012G", + "T10032C", + "G10033A", + "G10036C", + "A10051C", + "A10054G", + "C10061A", + "G10069A", + "G10082T", + "C10090T", + "T10093C", + "C10102T", + "A10108G", + "A10132C", + "T10138C", + "T10141C", + "G10156A", + "A10159C", + "A10171T", + "C10180T", + "A10183G", + "A10193G", + "G10213A", + "A10219G", + "A10228G", + "T10234C", + "C10243T", + "A10270C", + "A10276G", + "C10282T", + "T10288C", + "T10292G", + "C10312T", + "C10313A", + "G10318A", + "T10321C", + "G10324A", + "A10333T", + "C10339T", + "A10369G", + "A10372G", + "A10384C", + "C10387T", + "T10393G", + "C10397T", + "G10409A", + "A10416G", + "C10426T", + "C10429T", + "A10453G", + "T10468C", + "T10481C", + "T10486G", + "C10492A", + "T10495G", + "A10498T", + "C10501G", + "C10513T", + "C10522T", + "G10531A", + "G10549A", + "C10576T", + "A10582T", + "G10585T", + "A10594G", + "A10597G", + "C10600T", + "A10618G", + "C10636T", + "C10637T", + "T10642C", + "C10645A", + "A10647G", + "C10672G", + "C10681T", + "G10693C", + "G10696A", + "G10702T", + "A10714G", + "G10732A", + "A10744G", + "A10765G", + "A10780G", + "A10785T", + "T10786C", + "G10789A", + "C10795A", + "A10801G", + "A10807G", + "T10825A", + "A10828T", + "A10846T", + "G10870A", + "A10885T", + "C10886T", + "A10892G", + "C10894T", + "A10899G", + "G10909A", + "G10915A", + "A10927T", + "G10930A", + "T10951C", + "G10957A", + "C10960T", + "C10984T", + "T10993C", + "T10996C", + "A10999T", + "G11008C", + "T11014C", + "C11015T", + "A11026C", + "T11027A", + "G11032A", + "A11047G", + "G11050C", + "A11053C", + "C11054T", + "T11080C", + "C11107T", + "T11117A", + "T11118C", + "T11119A", + "C11120A", + "G11146A", + "T11161C", + "A11169G", + "G11188A", + "T11194C", + "T11200G", + "G11203A", + "C11215T", + "A11218G", + "T11228C", + "A11231T", + "T11256C", + "T11269C", + "A11278G", + "T11302C", + "A11334T", + "A11359T", + "A11396C" + ], + "6k": [ + "M39L" + ], + "CP": [ + "F8Y", + "V13M", + "F15L", + "D55S", + "K65R", + "Q78K", + "K82R", + "K85T", + "S92G", + "N93P", + "G94S", + "P98Q", + "S103N", + "T104P", + "S183N", + "E260D", + "K266R" + ], + "E1": [ + "V11A", + "A28S", + "T65A", + "S98A", + "V137I", + "E139G", + "N216S", + "H262L", + "M263I", + "N298D", + "E300G", + "F343I", + "F373T", + "L374I", + "H390R", + "T411S", + "V419A" + ], + "E2": [ + "M16T", + "P57S", + "M70V", + "H71Q", + "V119I", + "T120I", + "S140N", + "A155T", + "Q160K", + "T177A", + "Q187K", + "L197S", + "V207I", + "N218S", + "Y238F", + "D249N", + "L287F", + "D301N", + "N347D", + "S395T", + "Q407R", + "T420A" + ], + "E3": [ + "T18A", + "V38L", + "R56K" + ], + "nsP1": [ + "S140T", + "I227V", + "G409E", + "R465K", + "K476R", + "P478A", + "T483S", + "I508V" + ], + "nsP2": [ + "A54S", + "N109H", + "M224L", + "S346C", + "D352N", + "P439S", + "T443S", + "K505R", + "K543R", + "Q565H", + "S567A", + "R619P", + "V637I", + "N642H", + "N654S", + "S661H", + "V681T", + "I720V", + "I733V", + "Q788R" + ], + "nsP3": [ + "R26K", + "A61G", + "A62V", + "N74S", + "I96L", + "N117S", + "A174V", + "T229A", + "S263N", + "L268M", + "S335R", + "T336S", + "D338T", + "K349Q", + "A352L", + "A370S", + "T371I", + "Q377S", + "T378V", + "E379T", + "M382L", + "I384V", + "A385V", + "T388S", + "M389T", + "L395P", + "I407V", + "V421I", + "L440M", + "F446L", + "V459I", + "F466T", + "*481Q", + "V482T", + "I484V", + "P512R", + "A513T", + "R515C", + "K534R", + "E554D" + ], + "nsP4": [ + "V25I", + "L54V", + "K78R", + "K89R", + "T90S", + "N111D", + "V121I", + "A126T", + "E238D", + "S365W", + "A537T", + "T583A", + "K590R" + ] + }, + "labels": { + "aa": "6k: M39L; CP: F8Y, V13M, F15L, D55S, K65R, Q78K, K82R, K85T, S92G, N93P, G94S, P98Q, S103N, T104P, S183N, E260D, K266R; E1: V11A, A28S, T65A, S98A, V137I, E139G, N216S, H262L, M263I, N298D, E300G, F343I, F373T, L374I, H390R, T411S, V419A; E2: M16T, P57S, M70V, H71Q, V119I, T120I, S140N, A155T, Q160K, T177A, Q187K, L197S, V207I, N218S, Y238F, D249N, L287F, D301N, N347D, S395T, Q407R, T420A; E3: T18A, V38L, R56K; nsP1: S140T, I227V, G409E, R465K, K476R, P478A, T483S, I508V; nsP2: A54S, N109H, M224L, S346C, D352N, P439S, T443S, K505R, K543R, Q565H, S567A, R619P, V637I, N642H, N654S, S661H, V681T, I720V, I733V, Q788R; nsP3: R26K, A61G, A62V, N74S, I96L, N117S, A174V, T229A, S263N, L268M, S335R, T336S, D338T, K349Q, A352L, A370S, T371I, Q377S, T378V, E379T, M382L, I384V, A385V, T388S, M389T, L395P, I407V, V421I, L440M, F446L, V459I, F466T, *481Q, V482T, I484V, P512R, A513T, R515C, K534R, E554D; nsP4: V25I, L54V, K78R, K89R, T90S, N111D, V121I, A126T, E238D, S365W, A537T, T583A, K590R" + } + } + }, + { + "name": "NODE_0000093", + "node_attrs": { + "div": 0.9043558214141688, + "num_date": { + "value": 1997.726494149769, + "confidence": [ + 1997.6159426063236, + 1997.8531007670992 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999943616011472 + }, + "entropy": 8.886752964990301e-05 + }, + "year": { + "value": "1997", + "confidence": { + "1997": 0.9982543583213475, + "1999": 0.0010602379945717536 + }, + "entropy": 0.01655299366123543 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999957005504 + }, + "entropy": 8.712539554849392e-08 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G18T", + "A27T", + "A32T", + "A33C", + "A98G", + "A143C", + "C192T", + "C272T", + "T284C", + "C287A", + "G293C", + "A299G", + "T321C", + "C342T", + "G344A", + "G350A", + "C383T", + "C422T", + "T425C", + "T427A", + "G434A", + "T443C", + "T471C", + "A476G", + "C482A", + "C500T", + "G509C", + "A518C", + "T530C", + "C533T", + "T536C", + "T551A", + "A572T", + "T578C", + "G587C", + "C599T", + "C638T", + "C644A", + "T668C", + "A674T", + "G703A", + "C707T", + "C722T", + "T725A", + "G734A", + "A737G", + "T741C", + "C755T", + "T758C", + "A783C", + "A798C", + "A800G", + "T804C", + "A850G", + "C909A", + "G911A", + "A926C", + "T953C", + "C986T", + "A998G", + "C1007T", + "C1031T", + "G1034T", + "G1040A", + "A1049G", + "C1055A", + "G1067A", + "C1073T", + "T1091C", + "G1100A", + "T1151C", + "G1184A", + "T1187C", + "A1214G", + "C1220A", + "A1221C", + "T1229C", + "A1253C", + "C1266T", + "C1281A", + "C1287T", + "G1289A", + "C1301T", + "G1325A", + "T1328C", + "C1355G", + "A1373C", + "C1388T", + "A1403T", + "A1406G", + "T1412C", + "T1418C", + "G1427A", + "G1445A", + "T1455C", + "G1460C", + "A1462C", + "A1469G", + "A1481G", + "T1484C", + "A1488G", + "T1490C", + "C1495A", + "T1496G", + "A1499G", + "A1523G", + "C1526T", + "G1547A", + "T1560C", + "T1607A", + "G1610A", + "A1613G", + "C1616T", + "G1628A", + "A1637G", + "A1643C", + "G1646C", + "A1649G", + "C1667T", + "A1670T", + "A1676T", + "C1679A", + "A1682G", + "T1685A", + "T1700C", + "C1712A", + "C1718G", + "G1730A", + "T1736C", + "C1745T", + "A1760G", + "G1778A", + "C1779T", + "G1784T", + "G1787A", + "C1796A", + "G1799C", + "A1811G", + "A1815C", + "G1817A", + "A1823G", + "C1826T", + "T1829C", + "G1835C", + "A1838G", + "T1841A", + "C1862T", + "C1883A", + "C1886T", + "C1892T", + "C1904T", + "T1907C", + "G1940A", + "C1955T", + "G1958A", + "C1961T", + "C1964T", + "C1970T", + "C1973T", + "G1988A", + "C1994T", + "G2015A", + "A2021G", + "T2024C", + "A2036G", + "A2042G", + "G2069A", + "G2078A", + "C2084T", + "C2103T", + "G2105A", + "A2108G", + "T2111C", + "G2114A", + "A2120G", + "A2138G", + "T2198C", + "G2201T", + "A2237C", + "A2240G", + "C2252G", + "T2261C", + "C2262T", + "C2306T", + "C2309T", + "A2317G", + "C2328T", + "G2339A", + "T2354C", + "C2361T", + "C2364T", + "T2369C", + "A2372G", + "G2378A", + "A2384T", + "A2393G", + "G2396A", + "T2402C", + "T2405C", + "T2414C", + "A2426C", + "T2442C", + "T2456C", + "G2468A", + "A2477G", + "C2480T", + "A2483T", + "C2504T", + "C2519T", + "T2531C", + "G2567A", + "T2588C", + "A2600G", + "C2603A", + "T2606C", + "G2609A", + "G2615A", + "T2624C", + "A2639C", + "A2661C", + "T2666A", + "T2672C", + "A2690G", + "T2705C", + "G2729A", + "C2745T", + "T2753A", + "T2768C", + "A2771G", + "C2789A", + "G2795A", + "A2798C", + "T2819C", + "T2846C", + "C2849A", + "C2858A", + "T2891A", + "C2894T", + "G2897T", + "G2906A", + "G2912A", + "G2918A", + "C2921G", + "T2942C", + "A2945G", + "A2959G", + "G2960A", + "C2966A", + "C2987T", + "A2990G", + "A2993G", + "A3002G", + "T3030C", + "G3035A", + "T3041A", + "T3044C", + "G3050A", + "G3062A", + "T3071A", + "C3105T", + "C3119A", + "T3122C", + "T3126A", + "G3137C", + "G3140T", + "G3149A", + "T3152C", + "T3158C", + "A3176G", + "A3191C", + "A3224G", + "C3225T", + "T3242G", + "A3254G", + "A3263C", + "G3269A", + "A3275C", + "A3280G", + "C3284T", + "T3302A", + "G3329T", + "G3341T", + "A3353G", + "T3368G", + "T3386C", + "A3389T", + "G3398T", + "C3410A", + "G3413A", + "T3422C", + "G3438A", + "G3449A", + "G3479A", + "A3492C", + "C3493T", + "C3498T", + "G3500C", + "C3503G", + "C3506G", + "G3519A", + "G3539A", + "C3542A", + "T3557A", + "A3563C", + "T3566C", + "T3590C", + "T3593C", + "G3602A", + "T3614G", + "C3623T", + "T3625A", + "C3635A", + "C3647T", + "C3650T", + "A3662G", + "T3671C", + "T3677C", + "G3695A", + "A3698G", + "C3710T", + "C3734T", + "T3737C", + "G3751A", + "G3770A", + "T3791C", + "A3794G", + "C3797T", + "T3800C", + "C3806T", + "T3809A", + "C3812T", + "C3818T", + "C3827T", + "T3836C", + "C3848A", + "T3857C", + "T3869C", + "C3879A", + "T3887C", + "T3898C", + "A3899G", + "T3903C", + "G3920C", + "A3923G", + "T3926C", + "T3941C", + "A3949G", + "G3950A", + "G3951A", + "T3952C", + "C3959G", + "C3971T", + "A3974G", + "C3980T", + "C3992T", + "C4007G", + "A4013T", + "C4031T", + "T4046C", + "G4052C", + "T4070C", + "A4073G", + "T4100A", + "A4115G", + "A4118G", + "T4121C", + "C4130T", + "A4148G", + "C4154T", + "T4157C", + "G4172A", + "G4184C", + "T4190A", + "C4196T", + "A4205T", + "A4208G", + "T4229A", + "A4235T", + "G4259A", + "C4266G", + "G4268A", + "A4271G", + "G4274T", + "A4280G", + "C4292T", + "C4316A", + "T4328C", + "T4331C", + "C4340G", + "G4346T", + "G4352A", + "G4355C", + "C4356T", + "T4361A", + "A4370C", + "C4394T", + "A4403G", + "A4406G", + "C4412T", + "A4424G", + "A4436G", + "A4463G", + "A4484C", + "G4487A", + "T4496C", + "A4502T", + "T4541C", + "T4559C", + "C4564T", + "G4565T", + "G4568A", + "T4583C", + "G4586A", + "C4595A", + "G4598A", + "A4601G", + "C4607T", + "C4613G", + "C4625G", + "A4637G", + "G4673A", + "A4711C", + "T4712C", + "A4715G", + "C4718T", + "T4724C", + "G4730A", + "T4749C", + "C4760T", + "C4766T", + "T4799C", + "G4805C", + "C4808T", + "A4817T", + "T4820C", + "A4823C", + "T4824C", + "C4838T", + "C4841A", + "T4844C", + "T4847A", + "A4859G", + "G4877A", + "C4880A", + "T4889G", + "C4916T", + "C4925T", + "A4958G", + "C4961T", + "T4964G", + "C4973T", + "T4994C", + "T5009C", + "C5012T", + "G5014A", + "A5024G", + "A5026G", + "C5028G", + "G5030T", + "C5038A", + "G5040A", + "A5041T", + "G5042C", + "A5044G", + "A5076G", + "G5087A", + "C5088G", + "G5090A", + "T5095G", + "A5138G", + "A5144T", + "C5174G", + "A5175C", + "C5195T", + "G5201A", + "G5206A", + "A5209G", + "G5222A", + "C5234T", + "G5238A", + "T5244C", + "A5267G", + "T5270A", + "G5273A", + "A5276G", + "C5297T", + "G5299A", + "A5309G", + "A5318G", + "A5361C", + "T5364C", + "T5368C", + "A5399C", + "A5401G", + "G5414C", + "T5426C", + "T5429C", + "C5436A", + "C5437A", + "T5444C", + "A5450G", + "C5466G", + "C5489T", + "G5491A", + "A5495G", + "T5507C", + "C5565T", + "A5567G", + "G5570A", + "T5573A", + "T5594C", + "C5597T", + "C5603A", + "T5606C", + "C5612G", + "T5615C", + "T5624G", + "A5629T", + "A5630G", + "A5633G", + "A5634C", + "G5636A", + "T5639C", + "C5663T", + "A5675G", + "A5689T", + "A5693G", + "C5708A", + "T5711C", + "C5717A", + "T5720C", + "C5723A", + "T5735C", + "A5738G", + "A5741G", + "A5744G", + "G5765A", + "C5771A", + "G5783A", + "A5786G", + "T5796C", + "T5843C", + "T5862C", + "A5873C", + "C5875A", + "A5906G", + "G5909A", + "A5924T", + "G5925A", + "G5927A", + "C5933T", + "A5939G", + "T5942G", + "C5948T", + "T5951A", + "G5966T", + "A5978C", + "G5981A", + "T5984C", + "A5999G", + "T6003C", + "C6014T", + "A6023G", + "C6035T", + "G6037A", + "G6041A", + "G6049A", + "T6053G", + "A6056G", + "A6062G", + "A6065G", + "T6074C", + "G6080A", + "G6083A", + "C6084T", + "G6086A", + "G6089A", + "A6104T", + "T6110C", + "G6113A", + "G6131A", + "C6134T", + "C6140T", + "C6143T", + "A6144C", + "C6161T", + "T6165A", + "C6179T", + "T6188C", + "T6191C", + "C6194T", + "A6200G", + "T6204C", + "G6206T", + "C6212T", + "A6224G", + "C6229T", + "T6233C", + "T6234C", + "G6236T", + "C6242T", + "T6269C", + "A6272C", + "G6287A", + "T6290C", + "C6294T", + "G6296A", + "A6308C", + "T6323C", + "A6329G", + "A6336C", + "A6347G", + "G6350T", + "C6365T", + "T6371C", + "G6386A", + "A6407G", + "T6437C", + "C6449T", + "G6452A", + "T6461G", + "G6494T", + "T6497A", + "T6515G", + "G6536A", + "C6545T", + "T6566C", + "A6590G", + "C6599T", + "A6602G", + "G6614A", + "C6620G", + "C6632T", + "C6635T", + "C6662A", + "C6716T", + "T6719G", + "G6723A", + "T6728C", + "C6731T", + "G6734A", + "T6737C", + "T6746G", + "C6758T", + "C6764T", + "T6779C", + "G6821A", + "C6833T", + "G6836A", + "G6845A", + "C6852A", + "T6879C", + "C6906T", + "G6908A", + "A6914G", + "C6938A", + "C6944T", + "A6968G", + "T6989C", + "T7010C", + "T7016C", + "T7025A", + "C7028T", + "C7061T", + "C7067G", + "C7070T", + "T7076G", + "A7085G", + "T7097C", + "C7103T", + "C7106T", + "A7115T", + "G7124T", + "C7131T", + "G7133A", + "C7139A", + "A7151G", + "G7154A", + "G7175A", + "T7217C", + "C7220T", + "G7223A", + "T7235C", + "C7238T", + "G7262T", + "T7268G", + "T7271C", + "T7274C", + "C7275T", + "A7283G", + "C7307T", + "T7334C", + "C7340T", + "C7341A", + "G7379A", + "C7382T", + "T7389C", + "C7390A", + "T7391C", + "T7400C", + "G7406C", + "C7427G", + "A7428T", + "T7437G", + "A7451C", + "A7458T", + "C7463T", + "C7469G", + "G7479T", + "G7482T", + "C7491T", + "T7508G", + "A7558C", + "A7597C", + "T7627A", + "A7628C", + "A7630C", + "C7651G", + "T7682C", + "G7699A", + "G7705A", + "G7717A", + "G7762T", + "A7771G", + "A7784G", + "A7813C", + "C7817A", + "G7822C", + "A7835C", + "T7837C", + "A7843G", + "C7845G", + "C7846T", + "A7855C", + "A7866G", + "A7868G", + "C7873T", + "G7876A", + "C7885G", + "G7891A", + "A7894G", + "T7897A", + "A7900C", + "A7906G", + "T7925C", + "T7948C", + "A7975G", + "C7984T", + "G7987C", + "C7990A", + "A7993G", + "A8002G", + "C8011T", + "T8020C", + "A8026G", + "T8032A", + "C8044A", + "C8053T", + "A8077G", + "G8089A", + "T8098C", + "T8101A", + "A8119G", + "T8128C", + "C8149A", + "T8158C", + "C8173T", + "G8182A", + "G8185A", + "A8191G", + "C8203T", + "G8206A", + "G8209A", + "C8242T", + "C8272T", + "A8281C", + "T8287C", + "A8290G", + "T8293C", + "A8305G", + "A8326G", + "T8338C", + "A8344G", + "C8353T", + "A8356G", + "T8368G", + "T8377C", + "G8389T", + "A8392T", + "T8419C", + "C8422T", + "G8425A", + "A8446C", + "C8452T", + "T8476G", + "G8509T", + "T8536C", + "G8539A", + "C8545T", + "G8560A", + "G8569A", + "G8584A", + "T8596C", + "A8599G", + "G8605A", + "G8621A", + "T8635G", + "C8641T", + "T8656A", + "C8659T", + "C8662T", + "C8695T", + "C8699A", + "T8702C", + "T8725A", + "G8728A", + "C8731T", + "A8734T", + "C8743T", + "T8744C", + "G8746A", + "T8758C", + "G8764A", + "T8776C", + "A8781C", + "C8785A", + "A8792G", + "A8797C", + "A8800G", + "T8803C", + "A8806G", + "T8809G", + "A8824C", + "C8836T", + "T8848C", + "T8851C", + "C8860T", + "C8863A", + "A8866T", + "A8878C", + "T8935G", + "A8959G", + "C8992T", + "A8995G", + "C9010T", + "G9018A", + "T9034C", + "C9037A", + "G9040A", + "A9042G", + "C9079T", + "G9085A", + "C9088T", + "C9103T", + "T9115C", + "G9116T", + "T9118A", + "C9121T", + "A9136G", + "A9145G", + "G9157A", + "A9164G", + "C9166T", + "C9175T", + "G9179C", + "A9181C", + "C9196T", + "C9199T", + "G9202A", + "G9233A", + "C9242A", + "C9250T", + "G9259A", + "T9262C", + "G9283T", + "A9289G", + "A9304C", + "C9310T", + "G9313A", + "T9331C", + "C9340T", + "G9346T", + "T9364A", + "G9367A", + "C9371T", + "G9373A", + "G9410A", + "T9412C", + "T9416C", + "T9422C", + "A9430G", + "G9433T", + "C9442G", + "C9457T", + "C9458T", + "A9459C", + "T9466C", + "T9479C", + "G9508T", + "T9511C", + "A9512C", + "A9514T", + "A9523G", + "A9529G", + "C9533A", + "A9534G", + "A9535C", + "A9546T", + "G9550A", + "C9562T", + "A9583T", + "G9586A", + "C9592T", + "A9598T", + "A9607T", + "C9614T", + "G9625A", + "G9628A", + "T9637C", + "C9655G", + "G9664C", + "C9688G", + "A9691C", + "G9694A", + "C9721A", + "C9748A", + "C9763T", + "C9767T", + "G9775A", + "T9778C", + "T9785C", + "C9805A", + "G9808A", + "C9811T", + "G9829A", + "A9847G", + "C9850T", + "C9851T", + "C9892T", + "G9898C", + "G9925A", + "C9934G", + "G9943A", + "C9946T", + "G9990A", + "C10015T", + "G10018A", + "G10030A", + "C10057T", + "A10075G", + "T10093G", + "C10096T", + "G10111A", + "A10114C", + "T10117C", + "G10126A", + "C10129T", + "G10135A", + "A10162G", + "T10168C", + "A10193T", + "G10195C", + "A10201G", + "C10204T", + "T10207G", + "T10216C", + "C10222A", + "G10231A", + "T10261C", + "A10270G", + "C10285T", + "A10294G", + "G10327T", + "A10330G", + "C10342T", + "T10351C", + "C10354T", + "T10357C", + "C10358T", + "A10378C", + "A10384G", + "C10396T", + "G10399A", + "T10408A", + "T10411C", + "A10414G", + "G10423C", + "A10432T", + "T10447C", + "A10450G", + "T10459C", + "C10462T", + "A10474T", + "A10480G", + "G10483A", + "T10486C", + "T10495A", + "A10498G", + "T10504C", + "A10516G", + "T10519C", + "A10528G", + "G10534C", + "C10540T", + "C10555T", + "T10561C", + "C10564T", + "C10567T", + "A10570G", + "A10603G", + "C10624T", + "C10627A", + "C10645T", + "G10651T", + "T10654C", + "C10672A", + "C10675T", + "G10676A", + "C10678A", + "C10687T", + "G10693A", + "A10714C", + "T10717A", + "T10720C", + "G10723A", + "G10726A", + "A10741G", + "A10744T", + "T10768C", + "T10771C", + "G10774A", + "A10781G", + "G10789C", + "T10792C", + "C10795T", + "T10804C", + "T10825C", + "A10831G", + "A10834T", + "T10861C", + "A10893G", + "T10906A", + "T10907C", + "C10924T", + "A10927G", + "G10930C", + "T10936C", + "C10954T", + "G10963A", + "A10981G", + "A10987C", + "G11008A", + "T11028C", + "C11029T", + "G11032T", + "T11035C", + "G11039A", + "T11040C", + "C11041A", + "A11044G", + "C11077T", + "A11098G", + "T11101C", + "C11107A", + "C11116T", + "T11122C", + "A11131G", + "C11155T", + "T11161A", + "A11165T", + "C11182T", + "A11191G", + "A11197G", + "T11200A", + "G11224A", + "A11230G", + "C11239T", + "T11263C", + "A11284G", + "T11293C", + "T11296C", + "C11306T", + "A11325G", + "T11326C", + "C11332T", + "A11333T", + "A11340G", + "A11358G", + "A11359C", + "G11360A", + "A11363T", + "C11364A", + "T11386C", + "A11387G", + "T11388C" + ], + "6k": [ + "S53N" + ], + "CP": [ + "T75A", + "P86T", + "S92R", + "A95G", + "N102S", + "S103G" + ], + "E1": [ + "T65S", + "A226T", + "I261V", + "M263I", + "N298S", + "F343S", + "V347T", + "T389S", + "N442S" + ], + "E2": [ + "V20I", + "K73T", + "I77V", + "R152H", + "Q160R", + "A185S", + "N201D", + "A206P", + "A224T", + "V283I", + "H299S", + "Y306H", + "Q324S", + "Y328F" + ], + "nsP1": [ + "L128Q", + "Y143H", + "H146Q", + "R220Q", + "I247L", + "K269R", + "E403D", + "E473A", + "I482V", + "P484Q" + ], + "nsP2": [ + "K223R", + "K338Q", + "K437R", + "L493M", + "E496D", + "Q497H", + "N544S", + "K560N", + "V597I", + "T615L", + "Q617Y", + "A624T", + "F659Y", + "S701N", + "V750A", + "K767R", + "V768T", + "Q788H" + ], + "nsP3": [ + "E51D", + "L79V", + "A178V", + "N227T", + "R328K", + "N332S", + "P333A", + "T336N", + "E337I", + "D338G", + "K349E", + "P353A", + "I355R", + "M382L", + "W390*", + "R392H", + "*393W", + "G403R", + "Y405H", + "S423N", + "T444P", + "*445Q", + "F446S", + "K457R", + "P469K", + "P479A", + "S487N", + "P512S", + "E533V", + "Y553F" + ], + "nsP4": [ + "P58Q", + "V75I", + "I80M", + "Y101H", + "R112Q", + "S116N", + "M148L", + "S155T", + "A176V", + "V341I", + "L384M", + "S563H", + "T576S", + "S579A", + "T586S", + "A593S", + "A594S", + "H597Y" + ] + }, + "labels": { + "aa": "6k: S53N; CP: T75A, P86T, S92R, A95G, N102S, S103G; E1: T65S, A226T, I261V, M263I, N298S, F343S, V347T, T389S, N442S; E2: V20I, K73T, I77V, R152H, Q160R, A185S, N201D, A206P, A224T, V283I, H299S, Y306H, Q324S, Y328F; nsP1: L128Q, Y143H, H146Q, R220Q, I247L, K269R, E403D, E473A, I482V, P484Q; nsP2: K223R, K338Q, K437R, L493M, E496D, Q497H, N544S, K560N, V597I, T615L, Q617Y, A624T, F659Y, S701N, V750A, K767R, V768T, Q788H; nsP3: E51D, L79V, A178V, N227T, R328K, N332S, P333A, T336N, E337I, D338G, K349E, P353A, I355R, M382L, W390*, R392H, *393W, G403R, Y405H, S423N, T444P, *445Q, F446S, K457R, P469K, P479A, S487N, P512S, E533V, Y553F; nsP4: P58Q, V75I, I80M, Y101H, R112Q, S116N, M148L, S155T, A176V, V341I, L384M, S563H, T576S, S579A, T586S, A593S, A594S, H597Y" + } + }, + "children": [ + { + "name": "MH086244.1", + "node_attrs": { + "div": 0.9051402714141689, + "num_date": { + "value": 1997.9068484234845, + "confidence": [ + 1997.7940117824107, + 1997.9986301369863 + ] + }, + "author": { + "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", + "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex gnomatos" + }, + "year": { + "value": "1997", + "confidence": { + "1997": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IIID_MUCV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A4883G", + "A5162G", + "C7295T", + "C8054T", + "G8086A", + "T8794C", + "T10358A", + "T11443A", + "C11444A" + ], + "CP": [ + "L165F" + ], + "E1": [ + "L120M" + ] + }, + "labels": { + "aa": "CP: L165F; E1: L120M" + } + } + }, + { + "name": "NODE_0000094", + "node_attrs": { + "div": 0.9049283414141688, + "num_date": { + "value": 1997.87560344327, + "confidence": [ + 1997.8013854107874, + 1997.9440216517232 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999999681600225 + }, + "entropy": 6.633281505613066e-07 + }, + "year": { + "value": "1997", + "confidence": { + "1997": 0.997340609938459, + "1999": 0.0021568549017772407 + }, + "entropy": 0.021567434794191695 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999405444 + }, + "entropy": 1.4573938789357171e-09 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T4409C", + "C6227T", + "C6534G", + "A6535C", + "T6788C", + "T11134C" + ], + "nsP4": [ + "Q278A" + ] + }, + "labels": { + "aa": "nsP4: Q278A" + } + }, + "children": [ + { + "name": "MH086246.1", + "node_attrs": { + "div": 0.9057399514141687, + "num_date": { + "value": 1997.9986301369863, + "confidence": [ + 1997.9423373750487, + 1997.9986301369863 + ] + }, + "author": { + "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", + "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex gnomatos" + }, + "year": { + "value": "1997", + "confidence": { + "1997": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IIID_MUCV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A662G", + "C4600T", + "G6200A", + "C6380T", + "A6402G", + "T8011C", + "G8809A", + "G9686A", + "C9742T" + ], + "E2": [ + "A375T" + ], + "nsP3": [ + "A190V" + ], + "nsP4": [ + "N234D" + ] + }, + "labels": { + "aa": "E2: A375T; nsP3: A190V; nsP4: N234D" + } + } + }, + { + "name": "NODE_0000095", + "node_attrs": { + "div": 0.9058336814141688, + "num_date": { + "value": 1998.6135000267593, + "confidence": [ + 1998.475763141052, + 1998.7192010515128 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999999676120561 + }, + "entropy": 6.742983435304961e-07 + }, + "year": { + "value": "1999", + "confidence": { + "1997": 0.005722804847984215, + "1998": 0.0070182519525321466, + "1999": 0.9858679236660112 + }, + "entropy": 0.0927331284305986 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999998963514 + }, + "entropy": 2.484540027336807e-09 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G1310A", + "T3498C", + "T3710C", + "C3743A", + "A4497G", + "G6581A", + "T7247C", + "A7286G", + "T10147C", + "G10207A" + ], + "nsP2": [ + "Y617H" + ], + "nsP3": [ + "I156V" + ] + }, + "labels": { + "aa": "nsP2: Y617H; nsP3: I156V" + } + }, + "children": [ + { + "name": "NODE_0000096", + "node_attrs": { + "div": 0.9068275914141688, + "num_date": { + "value": 1998.9979414473428, + "confidence": [ + 1998.92723962613, + 1999.07013746365 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999999913172505 + }, + "entropy": 1.9217577155767625e-07 + }, + "year": { + "value": "1999", + "confidence": { + "1999": 0.9999698406245301 + }, + "entropy": 0.00039745240143517705 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999719024 + }, + "entropy": 7.087575108426895e-10 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1160C", + "C1991T", + "C2507T", + "A5096T", + "T6294C", + "A6821G", + "T8743C", + "T9874C", + "T10177C", + "C10402T", + "T10912C" + ], + "nsP3": [ + "R355S" + ] + }, + "labels": { + "aa": "nsP3: R355S" + } + }, + "children": [ + { + "name": "MH086245.1", + "node_attrs": { + "div": 0.9076384314141688, + "num_date": { + "value": 1999.162953911934, + "confidence": [ + 1999.0632890229492, + 1999.2927583973399 + ] + }, + "author": { + "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", + "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex gnomatos" + }, + "year": { + "value": "1999", + "confidence": { + "1999": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IIID_MUCV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C3122T", + "C4070T", + "A5765T", + "G6534C", + "C6535A", + "T8962C", + "C10357T", + "T10648C", + "C10894T" + ], + "nsP4": [ + "A278Q" + ] + }, + "labels": { + "aa": "nsP4: A278Q" + } + } + }, + { + "name": "MH086248.1", + "node_attrs": { + "div": 0.9068287414141688, + "num_date": { + "value": 1999.0013698630137, + "confidence": [ + 1999.0013698630137, + 1999.0772400175954 + ] + }, + "author": { + "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", + "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex gnomatos" + }, + "year": { + "value": "1999", + "confidence": { + "1999": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IIID_MUCV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": {} + } + } + ] + }, + { + "name": "NODE_0000097", + "node_attrs": { + "div": 0.9061004114141687, + "num_date": { + "value": 1998.7004537101043, + "confidence": [ + 1998.5760550086638, + 1998.8025183848067 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999999930981216 + }, + "entropy": 1.54335836049815e-07 + }, + "year": { + "value": "1999", + "confidence": { + "1997": 0.001976491085230706, + "1998": 0.014632805667197046, + "1999": 0.9825185966190564 + }, + "entropy": 0.10086069262059782 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999776759 + }, + "entropy": 5.678537469051449e-10 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2204T", + "T10366C", + "T10951C" + ] + } + }, + "children": [ + { + "name": "MH086247.1", + "node_attrs": { + "div": 0.9070053114141687, + "num_date": { + "value": 1998.9030872038454, + "confidence": [ + 1998.7627821914543, + 1998.9986301369863 + ] + }, + "author": { + "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", + "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex gnomatos" + }, + "year": { + "value": "1998", + "confidence": { + "1998": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IIID_MUCV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1502C", + "T3008C", + "C5285T", + "C6012T", + "A6468G", + "A9452G", + "C10050T", + "A10066T", + "T10225C", + "C10576T" + ], + "E1": [ + "T17I" + ], + "E2": [ + "T297A" + ], + "nsP4": [ + "P104S", + "I256V" + ] + }, + "labels": { + "aa": "E1: T17I; E2: T297A; nsP4: P104S, I256V" + } + } + }, + { + "name": "MH086249.1", + "node_attrs": { + "div": 0.9073694514141688, + "num_date": { + "value": 1999.0013698630137, + "confidence": [ + 1999.0013698630137, + 1999.1211383478037 + ] + }, + "author": { + "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", + "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex gnomatos" + }, + "year": { + "value": "1999", + "confidence": { + "1999": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IIID_MUCV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T2222A", + "C3821T", + "T4838C", + "A5162G", + "C5504G", + "A6593G", + "T6635C", + "T6680C", + "C8239T", + "C8483T", + "C9343T", + "G9529T", + "A10078G", + "C10894T" + ] + } + } + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000079", + "node_attrs": { + "div": 0.5268776914141688, + "num_date": { + "value": 1897.8956671308938, + "confidence": [ + 1892.069849378406, + 1901.8221033779594 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Brazil": 0.1086268188045318, + "Panama": 0.09005447317567568, + "Peru": 0.0728039147734827, + "Venezuela": 0.12443913399639306 + }, + "entropy": 2.7473224098982483 + }, + "year": { + "value": "1997", + "confidence": { + "1971": 0.022222498145808404, + "1973": 0.022086596473821107, + "1997": 0.02243800068934667, + "2017": 0.022179911733923047 + }, + "entropy": 3.849826968913341 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999472627309967 + }, + "entropy": 0.0005722078991305558 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T19A", + "C188A", + "C272T", + "C362G", + "C371T", + "G393A", + "A415G", + "T506C", + "T521G", + "G587C", + "A716G", + "G773T", + "C1055A", + "G1148C", + "C1154T", + "A1199C", + "T1328A", + "C1340T", + "T1455A", + "G1503A", + "G1518A", + "A1520C", + "G1604C", + "A1649G", + "T1700A", + "T1724A", + "C1805A", + "G1817A", + "C1976T", + "T2031C", + "A2039C", + "G2144A", + "A2158G", + "A2210G", + "A2237C", + "A2276T", + "C2304A", + "C2390G", + "C2597G", + "C2645G", + "T2753A", + "C2837G", + "C2858A", + "A2863C", + "C2873T", + "A3001C", + "T3122A", + "T3152G", + "C3154A", + "A3263T", + "A3275T", + "T3311C", + "A3374T", + "G3416A", + "A3494T", + "T3590G", + "A3617G", + "T3630G", + "C3642T", + "C3656T", + "A3863G", + "T3941C", + "C3944T", + "G3977T", + "T4034A", + "C4085G", + "C4139G", + "G4193A", + "A4205C", + "A4262T", + "C4325T", + "A4364C", + "C4388T", + "C4394A", + "A4502C", + "G4622C", + "G4661A", + "G4709A", + "A4711T", + "C4773A", + "T4799A", + "G4829T", + "A4869C", + "G4871C", + "G4877A", + "T5039A", + "T5051G", + "A5066G", + "G5075C", + "A5153C", + "T5159G", + "C5164A", + "C5173G", + "G5184C", + "A5192C", + "T5197C", + "T5254G", + "A5259T", + "G5312C", + "C5360A", + "G5366C", + "A5370T", + "A5432G", + "A5435C", + "A5585C", + "C5597G", + "A5627C", + "A5689T", + "C5787A", + "A5792C", + "A5906G", + "T5930A", + "C5933T", + "T6003C", + "T6158C", + "A6590T", + "T6680C", + "G6723A", + "A6749T", + "T6761C", + "T6779C", + "A6851T", + "A6932T", + "T7016C", + "T7055G", + "G7172C", + "T7271C", + "C7313G", + "A7448C", + "G7472C", + "C7480A", + "G7482T", + "A7490C", + "A7503G", + "C7561A", + "G7636C", + "A7843G", + "A7858G", + "A7903G", + "C8006A", + "A8042G", + "C8083T", + "A8163G", + "A8221T", + "C8242A", + "A8281C", + "C8299T", + "T8314A", + "T8377C", + "A8665G", + "G8701A", + "C8863G", + "A8866T", + "G9043C", + "T9049A", + "A9112C", + "A9139C", + "G9160A", + "C9210A", + "C9242A", + "G9382A", + "T9496A", + "C9505A", + "A9506G", + "C9556A", + "G9571A", + "G9664C", + "A9673C", + "A9691C", + "C9772A", + "A9787G", + "G9826C", + "A9832C", + "A9976G", + "C10096A", + "A10132G", + "T10212C", + "A10318C", + "A10420C", + "C10462T", + "C10471T", + "T10485C", + "C10492T", + "A10498G", + "A10546G", + "C10555T", + "C10623T", + "T10654C", + "A10758T", + "A10801C", + "T10825A", + "T10912C", + "T10969C", + "A10972G", + "A10990T", + "A10994G", + "A11044G", + "A11071G", + "A11125G" + ], + "CP": [ + "T161A", + "N201S" + ], + "E1": [ + "V71A", + "Q140H", + "I162T", + "T208I", + "Y253F", + "I332V" + ], + "E2": [ + "K160N", + "T216K", + "T315A" + ], + "nsP1": [ + "D106E", + "E117K", + "N124S", + "L471M", + "V487I", + "E492N" + ], + "nsP2": [ + "Y128H", + "K170R", + "D247E", + "N405T", + "E451A", + "A502D", + "S661A" + ], + "nsP3": [ + "N227I", + "D376E", + "A378E", + "T381S", + "A385P", + "E387D", + "M389T", + "I408S", + "T410S", + "D443E", + "K445N", + "S447C", + "Q468H", + "R518S", + "Y553F" + ], + "nsP4": [ + "Y101H", + "V341I", + "R590S", + "A593E", + "A594S", + "R596S", + "N601D" + ] + }, + "labels": { + "aa": "CP: T161A, N201S; E1: V71A, Q140H, I162T, T208I, Y253F, I332V; E2: K160N, T216K, T315A; nsP1: D106E, E117K, N124S, L471M, V487I, E492N; nsP2: Y128H, K170R, D247E, N405T, E451A, A502D, S661A; nsP3: N227I, D376E, A378E, T381S, A385P, E387D, M389T, I408S, T410S, D443E, K445N, S447C, Q468H, R518S, Y553F; nsP4: Y101H, V341I, R590S, A593E, A594S, R596S, N601D" + } + }, + "children": [ + { + "name": "NODE_0000080", + "node_attrs": { + "div": 1.0491409314141689, + "num_date": { + "value": 1961.9697896970245, + "confidence": [ + 1961.9213590030113, + 1961.9962130892106 + ] + }, + "country": { + "value": "Brazil", + "confidence": { + "Brazil": 0.9998228441481676 + }, + "entropy": 0.0021768723962586776 + }, + "year": { + "value": "1961", + "confidence": { + "1938": 0.001298146539633198, + "1960": 0.0014800063754004823, + "1961": 0.9597460150065279, + "1962": 0.0027102139160278408 + }, + "entropy": 0.32112696501929616 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999998856062142 + }, + "entropy": 1.942818474773733e-06 + }, + "place_of_collection": { + "value": "Amazon_Basin" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A30T", + "C35T", + "C65T", + "A98G", + "G113A", + "C131A", + "T149C", + "T161C", + "T185A", + "A191G", + "A200G", + "A212T", + "T221G", + "A230T", + "C233T", + "T263C", + "G293T", + "T302C", + "A308G", + "T311C", + "G314A", + "T321C", + "A323C", + "T325A", + "C326T", + "T332C", + "A335C", + "G336T", + "T354A", + "A361C", + "A368T", + "G374A", + "A377G", + "T378C", + "A394C", + "A395C", + "G398A", + "C401G", + "C407T", + "C416T", + "C419T", + "G428T", + "A431G", + "A437C", + "T440C", + "C447T", + "A461G", + "C470T", + "A472T", + "G474A", + "A475G", + "A476C", + "G479C", + "A482T", + "G483A", + "C485A", + "T488G", + "C491G", + "C494T", + "T500C", + "G521A", + "C527T", + "T533C", + "T536C", + "C542T", + "A543G", + "T545A", + "T554G", + "C560G", + "A572T", + "C575G", + "T593C", + "G602A", + "C605T", + "G608T", + "A614G", + "A617G", + "A623G", + "C635A", + "A651T", + "G662T", + "T665G", + "T668C", + "C671T", + "C677A", + "G680T", + "C692T", + "G704T", + "C707T", + "C708A", + "C717T", + "G719A", + "C722T", + "T725C", + "G731A", + "A737G", + "T741C", + "A743G", + "A749G", + "T750A", + "C752A", + "A753G", + "T758C", + "A764C", + "T770A", + "T773C", + "C776G", + "C782T", + "C791T", + "G797A", + "A798C", + "C803G", + "A806G", + "G812A", + "G827T", + "T836C", + "T845C", + "C848A", + "G851A", + "C852A", + "A856G", + "T857C", + "C902T", + "T905C", + "T920A", + "G944T", + "A947G", + "T953C", + "T956C", + "C959A", + "C968T", + "C986T", + "G1004A", + "T1007C", + "C1022T", + "C1037T", + "A1055G", + "T1056C", + "G1058C", + "C1061T", + "A1073C", + "C1076A", + "G1121T", + "T1160G", + "A1163G", + "G1166A", + "T1175C", + "G1184A", + "A1193G", + "A1196G", + "C1199T", + "G1200A", + "A1202C", + "G1205C", + "C1208A", + "G1211A", + "C1220G", + "A1221C", + "T1229C", + "A1253G", + "A1262G", + "C1266A", + "A1275C", + "A1277G", + "G1286A", + "G1289A", + "G1292C", + "G1298T", + "A1319G", + "G1325A", + "A1331G", + "T1334A", + "A1343G", + "C1352T", + "C1361T", + "A1365G", + "C1379T", + "C1388T", + "G1400A", + "A1404C", + "A1406T", + "A1407G", + "A1413T", + "G1414C", + "C1415A", + "A1416T", + "T1422C", + "G1427T", + "C1442T", + "A1443C", + "G1445C", + "C1448T", + "A1454G", + "G1460C", + "A1462C", + "A1468G", + "C1476A", + "G1478C", + "C1479G", + "A1481G", + "T1484G", + "T1493A", + "C1496T", + "A1499T", + "C1505T", + "C1506G", + "A1508G", + "A1516G", + "A1519G", + "C1520T", + "C1526G", + "G1541A", + "C1544G", + "A1545C", + "A1549C", + "G1550T", + "C1553T", + "A1558C", + "G1559T", + "T1560C", + "C1563A", + "G1565A", + "C1567A", + "A1568G", + "A1571C", + "A1574T", + "A1577T", + "G1583C", + "T1586C", + "T1589G", + "G1598A", + "T1607C", + "G1610A", + "A1613G", + "C1616A", + "T1619C", + "C1622A", + "G1628C", + "C1632T", + "A1637G", + "C1655T", + "G1658C", + "G1670C", + "G1673A", + "C1674T", + "C1679T", + "T1685C", + "A1695C", + "C1712T", + "C1715A", + "C1718T", + "A1724G", + "C1728T", + "T1730G", + "A1739G", + "C1742A", + "T1754C", + "A1757G", + "A1763G", + "C1772A", + "A1778C", + "C1779T", + "T1784C", + "C1793G", + "C1796A", + "A1805G", + "T1811G", + "C1814A", + "A1818C", + "A1819G", + "A1820C", + "T1823A", + "A1832T", + "G1835C", + "A1838G", + "T1841G", + "C1844T", + "T1847C", + "A1853G", + "A1862C", + "T1865A", + "G1868A", + "G1871A", + "C1883A", + "G1889T", + "T1895C", + "A1901C", + "C1902T", + "T1907C", + "T1922C", + "C1928T", + "A1937G", + "G1946A", + "G1952A", + "G1958A", + "C1961T", + "C1967A", + "C1974A", + "A1979C", + "T1997C", + "C2009T", + "A2012G", + "G2015C", + "T2024A", + "A2025G", + "G2026A", + "C2027A", + "A2030C", + "C2039T", + "A2042G", + "C2045T", + "A2062G", + "A2066G", + "A2084C", + "T2086A", + "C2090G", + "T2091C", + "C2092A", + "A2099G", + "A2108C", + "A2123G", + "T2126G", + "C2141T", + "C2147T", + "C2153T", + "G2156A", + "A2165G", + "A2168T", + "A2174C", + "T2177C", + "A2183G", + "A2186G", + "C2192A", + "A2195C", + "T2198C", + "C2204T", + "C2207T", + "A2213C", + "A2219G", + "G2225A", + "T2228G", + "A2240G", + "C2249T", + "A2255G", + "A2256C", + "G2270A", + "A2285G", + "A2294T", + "A2297G", + "A2303G", + "G2306A", + "C2309T", + "A2317G", + "A2318G", + "A2322C", + "A2324C", + "G2325A", + "G2326A", + "G2327C", + "C2333G", + "A2337T", + "T2338C", + "T2339G", + "T2348A", + "A2357T", + "T2369C", + "A2372G", + "C2382T", + "A2387G", + "A2400G", + "T2402G", + "T2411C", + "T2414C", + "A2417G", + "A2426G", + "C2433T", + "C2435A", + "G2441A", + "T2442C", + "C2450A", + "T2453C", + "T2462C", + "A2464G", + "G2468A", + "G2489C", + "C2507T", + "G2522A", + "A2525G", + "T2531C", + "T2533A", + "A2543G", + "T2546A", + "G2558A", + "T2576A", + "T2588C", + "G2597A", + "C2612G", + "C2615G", + "C2616T", + "T2621C", + "T2624C", + "A2633G", + "A2639G", + "A2651C", + "A2653G", + "G2660A", + "A2661C", + "A2662C", + "T2672A", + "C2681G", + "T2687C", + "A2696G", + "T2705G", + "T2714C", + "T2720A", + "C2726T", + "G2741A", + "G2744A", + "C2745T", + "A2750G", + "T2756C", + "A2766C", + "T2768C", + "A2771G", + "A2772G", + "A2774G", + "G2780T", + "A2786G", + "A2798G", + "G2801A", + "C2804G", + "T2813C", + "C2816T", + "T2819C", + "C2822G", + "G2828A", + "G2837A", + "T2846C", + "C2849T", + "G2852C", + "G2856T", + "C2861G", + "C2864G", + "A2867G", + "G2876C", + "G2888C", + "T2891G", + "C2894T", + "G2897T", + "C2903T", + "A2904C", + "A2907G", + "C2909G", + "G2912A", + "T2942C", + "A2945G", + "G2951T", + "G2954A", + "C2964G", + "A2966G", + "A2969C", + "C2975T", + "C2977G", + "G2987C", + "A2990G", + "A2993G", + "A2999G", + "A3002G", + "T3008C", + "T3011C", + "A3021C", + "C3029T", + "T3030A", + "A3043C", + "T3044A", + "T3047G", + "C3059T", + "T3065C", + "G3077C", + "C3086T", + "A3092G", + "A3095G", + "G3102A", + "A3104T", + "G3107C", + "A3109G", + "C3113G", + "C3116G", + "C3119G", + "A3120G", + "A3122G", + "G3123A", + "A3124C", + "C3125G", + "G3137A", + "C3146T", + "A3154G", + "C3155A", + "T3158C", + "A3164G", + "C3170T", + "G3173A", + "C3179T", + "A3182G", + "A3185C", + "G3188A", + "A3194G", + "C3204T", + "C3209T", + "C3213A", + "C3221T", + "T3231C", + "G3233T", + "T3236C", + "A3239G", + "G3245A", + "T3248C", + "T3251A", + "A3254C", + "C3257G", + "T3263C", + "C3272A", + "A3299G", + "G3302C", + "G3308A", + "A3312C", + "T3313G", + "G3314A", + "C3317T", + "G3329A", + "A3332T", + "C3338T", + "G3352A", + "C3359T", + "C3366T", + "G3368A", + "T3371C", + "T3374C", + "G3380T", + "T3386G", + "A3389T", + "A3390C", + "G3391A", + "C3395T", + "G3398A", + "A3406G", + "C3407T", + "A3408T", + "T3413G", + "C3422G", + "T3425C", + "A3427T", + "C3435T", + "A3440T", + "A3446G", + "G3449C", + "T3461G", + "T3470A", + "T3476C", + "C3482G", + "C3485T", + "T3494C", + "A3497G", + "C3500G", + "C3503G", + "C3504A", + "C3505G", + "C3506A", + "C3512T", + "T3515C", + "C3520G", + "A3521T", + "G3525A", + "A3528G", + "A3533G", + "C3534T", + "A3538G", + "G3554A", + "T3566C", + "A3567C", + "A3570G", + "T3571C", + "G3572C", + "C3578A", + "G3587A", + "A3588G", + "C3589T", + "C3596T", + "T3605G", + "A3608C", + "C3609A", + "T3614G", + "C3622A", + "T3625A", + "A3629G", + "T3632C", + "G3654A", + "G3660A", + "A3662C", + "C3665G", + "A3670T", + "T3686G", + "T3689C", + "A3698C", + "A3706G", + "T3713C", + "C3716T", + "G3722A", + "A3731G", + "T3743C", + "G3746A", + "T3761A", + "A3767G", + "G3782A", + "A3794G", + "C3797T", + "T3809C", + "C3812G", + "C3818G", + "A3824G", + "A3828C", + "A3830T", + "A3839G", + "T3851C", + "T3854C", + "T3857C", + "C3861A", + "C3869T", + "A3870C", + "A3871G", + "C3875T", + "C3878G", + "G3881T", + "G3884C", + "A3896G", + "G3897A", + "T3898C", + "A3899T", + "T3926C", + "A3929T", + "C3945A", + "A3949G", + "A3953G", + "T3965C", + "C3980A", + "T3987C", + "G3989T", + "C3998A", + "A4004T", + "C4007A", + "T4008G", + "A4013T", + "C4014T", + "A4022G", + "C4025G", + "A4028G", + "C4037A", + "A4040G", + "G4052C", + "A4055G", + "A4068T", + "C4069T", + "C4073G", + "A4079G", + "T4088A", + "C4091A", + "A4097G", + "A4107C", + "A4109C", + "A4115G", + "G4122A", + "T4124C", + "A4147G", + "A4151G", + "T4153A", + "G4157A", + "G4162A", + "G4175A", + "C4197A", + "G4202T", + "A4206C", + "A4208G", + "G4212C", + "G4215T", + "C4216T", + "A4217G", + "A4224G", + "C4226G", + "T4229A", + "T4232C", + "A4235G", + "C4244G", + "T4247C", + "C4253T", + "A4271G", + "T4274C", + "A4279G", + "A4289T", + "A4292G", + "G4295A", + "A4305G", + "C4307G", + "T4310A", + "G4317A", + "C4319A", + "A4329C", + "T4331C", + "A4337C", + "A4347G", + "T4349G", + "G4352A", + "C4353T", + "C4356T", + "C4367A", + "A4368G", + "C4376T", + "A4391G", + "A4394G", + "A4406T", + "C4416T", + "A4421T", + "A4424G", + "C4430T", + "A4431T", + "A4436G", + "A4442G", + "T4445C", + "C4451A", + "C4454T", + "G4469A", + "G4481T", + "G4490A", + "A4503C", + "G4505T", + "A4508G", + "G4515A", + "T4516C", + "A4526T", + "T4529C", + "A4530C", + "A4538G", + "C4543A", + "C4547G", + "G4548C", + "G4551T", + "C4552G", + "A4553C", + "T4562C", + "G4565T", + "C4569T", + "T4574C", + "T4583C", + "C4592T", + "C4595A", + "C4601G", + "A4604C", + "A4610G", + "C4613A", + "C4619T", + "C4622T", + "C4625T", + "T4637C", + "C4647T", + "A4652G", + "T4664C", + "G4676A", + "G4685C", + "A4688G", + "T4694C", + "C4700G", + "A4710G", + "T4712G", + "A4716G", + "G4721T", + "T4727C", + "A4736T", + "C4739T", + "T4740A", + "C4745T", + "C4749T", + "A4757G", + "C4760T", + "C4766T", + "C4784T", + "C4787A", + "T4790G", + "A4802G", + "A4805G", + "C4808T", + "C4810T", + "A4811G", + "A4814G", + "G4819C", + "T4820G", + "A4823G", + "G4826T", + "C4832T", + "C4841A", + "A4859G", + "C4860A", + "A4865G", + "A4895G", + "A4910C", + "C4913T", + "C4916T", + "C4931T", + "A4932C", + "A4934C", + "C4937T", + "A4938G", + "T4940G", + "C4961T", + "T4962G", + "C4965T", + "A4966G", + "T4970G", + "C4979T", + "G4991A", + "G4997A", + "T4998C", + "C5003A", + "T5006C", + "A5012C", + "G5015A", + "C5018T", + "C5019A", + "C5023A", + "A5026C", + "A5030C", + "G5031A", + "G5033C", + "C5034G", + "C5035T", + "A5037C", + "C5038A", + "G5043A", + "A5044G", + "G5045C", + "C5047G", + "C5050T", + "G5051A", + "G5052C", + "T5056A", + "C5058T", + "C5059G", + "G5060C", + "A5063G", + "A5065T", + "C5075T", + "A5076G", + "C5077A", + "A5078T", + "A5080G", + "G5082T", + "G5083C", + "G5084A", + "G5091A", + "A5092G", + "A5093T", + "C5095T", + "C5101T", + "A5102C", + "T5105A", + "A5106C", + "A5108G", + "A5109G", + "G5114C", + "G5118A", + "A5120T", + "A5121G", + "C5122A", + "A5123C", + "G5124A", + "G5126T", + "T5129C", + "G5131T", + "A5132C", + "G5133T", + "C5134T", + "A5140G", + "A5141T", + "A5142C", + "A5149G", + "C5150G", + "A5151G", + "T5152G", + "A5155C", + "A5156G", + "A5161T", + "G5163C", + "A5164G", + "A5165T", + "G5166C", + "A5167T", + "C5171G", + "A5172G", + "A5178G", + "G5179A", + "T5182G", + "C5184T", + "G5186A", + "T5187A", + "A5189T", + "G5198A", + "A5199G", + "C5202T", + "A5203C", + "C5204T", + "A5206T", + "A5207G", + "A5212G", + "G5213T", + "A5216G", + "G5217A", + "A5221G", + "A5225C", + "G5229A", + "G5231C", + "C5234T", + "C5236T", + "G5237A", + "C5241G", + "C5242A", + "T5243G", + "C5245T", + "T5246C", + "G5249T", + "T5250G", + "C5255G", + "T5259C", + "C5261A", + "G5263T", + "G5264A", + "T5265G", + "A5267G", + "A5268C", + "C5278T", + "A5279G", + "A5284G", + "C5285T", + "T5286C", + "T5287C", + "T5288A", + "A5290T", + "G5295A", + "A5296T", + "G5299A", + "C5300G", + "T5302C", + "T5304G", + "C5305A", + "C5306A", + "T5311A", + "A5314C", + "C5315G", + "A5316G", + "C5317A", + "A5318G", + "T5320A", + "G5325T", + "A5334G", + "T5335C", + "A5336T", + "A5337G", + "A5361C", + "C5362A", + "A5364C", + "A5365T", + "T5367C", + "T5370C", + "C5372A", + "T5373G", + "A5400C", + "A5402C", + "T5411G", + "T5417G", + "G5420C", + "C5423T", + "T5426G", + "A5434G", + "T5441A", + "G5442A", + "T5443C", + "T5444C", + "A5449T", + "A5450G", + "A5457T", + "G5487C", + "C5489T", + "A5490G", + "G5491C", + "C5494T", + "A5496G", + "G5497A", + "T5501C", + "A5502G", + "T5506C", + "A5507C", + "A5586C", + "C5590G", + "C5594G", + "A5598C", + "G5599A", + "A5600G", + "T5601C", + "C5602T", + "C5603G", + "G5610T", + "T5611C", + "T5615G", + "A5616C", + "A5617G", + "G5621T", + "A5624G", + "A5630C", + "A5634C", + "G5636T", + "G5637T", + "T5638C", + "G5639T", + "C5642A", + "C5645G", + "A5646G", + "G5647T", + "G5648T", + "G5654A", + "G5667A", + "G5672T", + "T5720C", + "A5729G", + "T5735C", + "T5736C", + "A5738G", + "A5744G", + "A5753C", + "A5754C", + "G5765T", + "C5766T", + "C5771G", + "A5774G", + "A5795G", + "T5804A", + "A5828G", + "A5831G", + "A5834G", + "A5837G", + "A5841G", + "T5842C", + "A5849G", + "A5855G", + "T5856C", + "A5861G", + "C5867T", + "C5868G", + "C5870A", + "A5871T", + "C5875A", + "T5879A", + "C5882T", + "A5891G", + "T5894C", + "C5895T", + "A5896T", + "C5900G", + "G5903T", + "G5905A", + "A5921G", + "A5930G", + "A5936T", + "A5939G", + "C5943T", + "C5952T", + "T5963C", + "T5964C", + "A5968G", + "G5970T", + "A5975G", + "A5979C", + "A5980G", + "T5984C", + "C5993T", + "C5996G", + "T6008G", + "C6011G", + "T6014G", + "T6020C", + "A6023C", + "A6026G", + "A6027T", + "A6033G", + "A6038C", + "G6041A", + "T6045G", + "T6050C", + "T6053G", + "A6054C", + "A6056C", + "A6062C", + "G6063A", + "A6065T", + "A6068G", + "A6071G", + "T6077C", + "G6080T", + "G6086C", + "G6092T", + "A6104T", + "G6107C", + "T6110C", + "G6113A", + "A6122C", + "A6125G", + "A6128G", + "C6140A", + "C6149T", + "C6161A", + "T6174C", + "G6176T", + "C6179T", + "A6182G", + "T6191C", + "C6194T", + "T6197A", + "A6200G", + "T6209A", + "T6215C", + "G6221A", + "G6228A", + "C6230T", + "C6245A", + "C6249A", + "A6254C", + "G6284T", + "T6290C", + "A6293C", + "A6299G", + "C6305A", + "A6308G", + "A6311G", + "A6314G", + "C6317T", + "C6320T", + "A6329C", + "A6341G", + "A6347T", + "T6362C", + "C6365T", + "C6383T", + "G6386A", + "A6407G", + "T6410C", + "C6422T", + "A6423C", + "A6424G", + "T6434C", + "T6446C", + "G6447A", + "A6448C", + "G6458C", + "T6464C", + "T6470C", + "T6473C", + "A6476G", + "T6477C", + "A6491G", + "A6494T", + "T6497C", + "T6500A", + "C6501T", + "A6505T", + "T6506C", + "A6509T", + "A6519G", + "T6521C", + "G6533T", + "C6545G", + "T6557C", + "T6560G", + "A6572G", + "A6573C", + "A6575G", + "T6590C", + "A6593T", + "C6599T", + "A6611G", + "A6614G", + "C6615A", + "G6617A", + "C6620G", + "G6626A", + "G6632A", + "C6635A", + "G6638A", + "T6647C", + "A6650C", + "T6656C", + "T6659G", + "C6671T", + "C6677A", + "C6681A", + "A6683G", + "G6689T", + "T6692C", + "A6701G", + "T6704C", + "C6710G", + "C6711T", + "C6714T", + "T6728C", + "A6752G", + "T6767C", + "T6770C", + "G6776A", + "A6784T", + "C6786A", + "T6797C", + "G6821A", + "C6824T", + "C6839T", + "G6845T", + "G6854T", + "A6860G", + "C6869A", + "A6875G", + "C6879T", + "A6881G", + "C6897T", + "G6905A", + "A6914G", + "G6917A", + "T6923C", + "A6929G", + "T6933A", + "A6935G", + "C6950G", + "T6953C", + "T6965C", + "A6968G", + "T6989G", + "G7013T", + "T7031C", + "C7034T", + "C7040G", + "A7046G", + "G7049A", + "C7053A", + "A7058G", + "G7061C", + "C7062T", + "C7067A", + "C7070T", + "C7109T", + "A7115G", + "C7118A", + "A7121G", + "G7124T", + "C7139G", + "G7160A", + "C7163T", + "A7169G", + "A7187G", + "C7214T", + "T7217C", + "G7223A", + "C7230T", + "T7235C", + "C7247T", + "C7250A", + "A7253C", + "A7256C", + "C7260A", + "G7277C", + "A7280G", + "C7284T", + "G7292A", + "T7295G", + "A7298C", + "G7307C", + "A7310C", + "C7312T", + "T7325C", + "C7334T", + "A7343T", + "A7346C", + "G7349A", + "T7352C", + "G7355A", + "G7362C", + "C7363A", + "A7371T", + "A7372G", + "T7385A", + "C7390A", + "A7391G", + "G7403A", + "A7406T", + "A7415C", + "C7427A", + "C7433T", + "T7436C", + "T7437G", + "C7439A", + "C7442G", + "T7445C", + "A7446G", + "C7454T", + "A7458G", + "C7463G", + "C7469A", + "A7470G", + "C7472T", + "T7478G", + "G7479C", + "A7488C", + "C7493T", + "A7497C", + "A7512T", + "C7513G", + "A7525G", + "G7541A", + "G7544A", + "C7549T", + "C7574A", + "A7575C", + "A7576T", + "A7579C", + "C7603T", + "A7611G", + "G7619C", + "T7624C", + "C7628A", + "C7630G", + "T7645C", + "A7649C", + "C7651G", + "C7654T", + "C7657T", + "T7659A", + "G7666T", + "A7667T", + "G7669A", + "A7678G", + "T7682C", + "C7699T", + "C7702T", + "C7703T", + "G7708T", + "A7713C", + "G7714A", + "C7721A", + "T7726G", + "A7727T", + "C7731A", + "G7732A", + "C7733G", + "C7734G", + "G7738A", + "G7741A", + "A7744C", + "T7747G", + "T7750A", + "G7753A", + "A7761G", + "G7765A", + "G7766A", + "C7771G", + "A7773G", + "G7774T", + "A7779C", + "C7782T", + "A7784C", + "T7786G", + "T7798C", + "A7803T", + "G7810A", + "A7811G", + "A7812G", + "T7813A", + "A7814G", + "C7817A", + "A7818G", + "G7819A", + "G7834A", + "A7835C", + "A7838C", + "A7839G", + "A7840C", + "G7842A", + "C7844A", + "C7845A", + "C7847G", + "A7849C", + "C7852G", + "C7854A", + "G7869C", + "C7870G", + "C7873G", + "C7884T", + "C7885T", + "G7891C", + "A7894G", + "C7910A", + "C7918G", + "T7925C", + "G7927T", + "A7942C", + "C7945T", + "T7948C", + "T7951C", + "G7957T", + "C7960G", + "A7963G", + "A7965G", + "T7968C", + "T7981A", + "C7990G", + "A7993C", + "G7999A", + "T8000C", + "C8005T", + "A8011C", + "A8023G", + "A8026G", + "A8027C", + "A8028G", + "G8029T", + "C8038T", + "C8041T", + "C8050T", + "C8053T", + "G8059A", + "A8071G", + "T8080C", + "G8086A", + "A8095C", + "T8101C", + "C8104T", + "C8110T", + "T8122C", + "A8131G", + "C8137T", + "A8146G", + "C8149A", + "A8152G", + "T8158C", + "A8179G", + "C8182A", + "T8188C", + "A8191G", + "G8209A", + "A8218T", + "A8224G", + "A8230G", + "C8239T", + "G8254T", + "C8257T", + "A8263G", + "A8269C", + "A8290C", + "G8296A", + "A8305C", + "T8308A", + "G8320C", + "C8323T", + "C8326G", + "C8356A", + "T8368C", + "G8383A", + "A8392T", + "C8398T", + "C8413T", + "A8423T", + "A8443G", + "A8446C", + "C8458T", + "G8460A", + "A8467C", + "A8470C", + "A8472C", + "G8473C", + "T8476A", + "G8479T", + "A8482G", + "A8483C", + "T8491C", + "A8500G", + "A8504C", + "A8505G", + "G8509A", + "C8512G", + "T8518C", + "G8521C", + "A8530G", + "C8551T", + "A8555G", + "A8556C", + "G8557T", + "A8559G", + "G8560A", + "G8569T", + "G8572T", + "G8584A", + "A8596C", + "G8605A", + "C8608T", + "C8614G", + "C8623T", + "G8626A", + "C8632T", + "C8650T", + "C8659T", + "A8662T", + "G8668T", + "A8672C", + "G8674C", + "G8683C", + "A8698G", + "C8699A", + "C8702A", + "G8716T", + "C8737G", + "A8742G", + "A8746C", + "G8750A", + "C8752A", + "G8768A", + "A8779T", + "T8785A", + "A8788G", + "A8792G", + "A8794G", + "A8797G", + "A8800C", + "A8806G", + "A8812T", + "T8833C", + "T8839C", + "A8842C", + "G8848C", + "C8857T", + "G8879C", + "A8881C", + "C8890A", + "C8896A", + "T8905C", + "T8914A", + "T8915C", + "C8916A", + "A8917T", + "C8920T", + "A8923T", + "T8927C", + "C8928T", + "C8929G", + "C8932T", + "C8935G", + "C8941G", + "T8944C", + "A8947G", + "A8951C", + "A8952G", + "A8953G", + "T8959C", + "T8962C", + "C8968T", + "T8983G", + "C8989T", + "G9013T", + "C9016T", + "C9019T", + "G9022A", + "T9028G", + "G9040A", + "A9041C", + "A9044C", + "G9045A", + "A9046C", + "A9049G", + "T9052C", + "C9058G", + "A9061G", + "C9067T", + "A9076G", + "T9077C", + "C9078T", + "C9079G", + "A9082G", + "C9095A", + "C9103G", + "A9104T", + "A9113G", + "T9115A", + "T9118A", + "C9121T", + "G9125A", + "G9127C", + "A9130G", + "C9133G", + "A9136G", + "G9137A", + "G9142A", + "G9147C", + "C9148A", + "T9150C", + "C9151G", + "C9152T", + "G9154T", + "G9157A", + "C9175T", + "A9176G", + "A9178T", + "C9184A", + "G9190A", + "C9193A", + "A9194G", + "C9196G", + "A9198G", + "C9204T", + "A9205G", + "A9208G", + "A9216C", + "G9220A", + "A9226G", + "G9233A", + "A9247C", + "G9252A", + "A9253C", + "C9254A", + "C9290T", + "G9292A", + "G9302C", + "A9304C", + "C9310G", + "G9313A", + "C9314T", + "G9328A", + "A9337T", + "C9343T", + "A9349T", + "A9352C", + "A9357G", + "A9370G", + "A9379G", + "A9386G", + "A9392T", + "C9403T", + "A9406G", + "T9415G", + "G9418C", + "A9420G", + "A9421G", + "C9427T", + "A9431C", + "A9432G", + "G9433A", + "A9434C", + "C9454A", + "C9457G", + "C9458G", + "A9459G", + "A9469G", + "A9472G", + "C9473T", + "A9475C", + "A9477G", + "T9479C", + "C9487T", + "T9497A", + "T9499C", + "C9507T", + "G9509A", + "T9510C", + "T9511A", + "T9520C", + "T9521A", + "C9523G", + "A9529G", + "A9535G", + "G9550T", + "C9559T", + "C9562T", + "G9565A", + "G9568C", + "A9572C", + "G9574T", + "T9576A", + "A9583C", + "A9589G", + "A9595T", + "A9598G", + "A9601C", + "A9602G", + "A9607C", + "C9614T", + "G9619A", + "G9626A", + "A9629G", + "T9631G", + "A9632G", + "C9633T", + "T9634G", + "T9657C", + "T9659C", + "C9661A", + "T9677A", + "A9680C", + "T9682C", + "C9688G", + "G9695A", + "A9697C", + "A9698G", + "T9703C", + "T9708C", + "T9709G", + "G9710T", + "A9712T", + "G9715C", + "C9718T", + "A9719G", + "C9721A", + "T9728C", + "T9730G", + "C9740A", + "A9742G", + "T9744C", + "T9745C", + "G9748A", + "C9752T", + "C9757A", + "T9760C", + "A9766T", + "G9769A", + "C9780T", + "C9782A", + "T9790C", + "T9791G", + "G9795A", + "G9799T", + "A9802G", + "G9803A", + "G9805A", + "C9811T", + "C9814T", + "A9817T", + "T9823A", + "A9827C", + "G9829A", + "C9832T", + "C9838G", + "A9839G", + "A9847G", + "C9850G", + "C9851T", + "C9862G", + "T9871C", + "G9880A", + "C9886T", + "C9904A", + "T9907G", + "C9916T", + "C9917T", + "C9922T", + "G9926T", + "A9929C", + "C9930T", + "T9931C", + "C9935G", + "T9952C", + "C9955T", + "G9959C", + "C9973G", + "C9987T", + "C10000A", + "C10015T", + "C10027T", + "G10036C", + "G10042A", + "C10057G", + "A10063G", + "A10066G", + "A10075C", + "A10078T", + "C10079T", + "A10091G", + "A10093T", + "A10096G", + "C10108G", + "G10111A", + "C10112T", + "T10117C", + "A10123G", + "C10129T", + "C10130T", + "T10141C", + "C10147T", + "A10159C", + "A10171T", + "C10180T", + "A10183T", + "A10192C", + "A10193T", + "G10195A", + "G10198A", + "A10201G", + "T10207G", + "A10210C", + "T10214C", + "A10215G", + "T10216C", + "C10222T", + "T10225C", + "A10228G", + "A10235C", + "C10240G", + "A10246T", + "C10255T", + "T10273A", + "A10276G", + "T10279C", + "T10294C", + "C10300T", + "C10303A", + "C10312T", + "A10313C", + "A10314G", + "A10329G", + "A10333G", + "C10342T", + "C10345T", + "G10346T", + "T10348A", + "T10357G", + "C10358G", + "A10359C", + "G10360C", + "A10363T", + "T10366C", + "A10369G", + "A10372T", + "A10378G", + "C10381A", + "A10384G", + "C10402T", + "A10403G", + "G10411A", + "A10416G", + "A10417G", + "A10419G", + "C10420T", + "C10422T", + "C10429T", + "C10431T", + "A10432G", + "T10434C", + "C10435G", + "A10453G", + "T10456C", + "G10460A", + "A10463G", + "C10465T", + "A10474T", + "T10481A", + "T10486C", + "T10495G", + "C10507T", + "A10513C", + "C10516T", + "C10523A", + "G10534C", + "C10543A", + "A10570C", + "G10573A", + "A10582G", + "A10585T", + "A10587G", + "A10591G", + "A10594T", + "A10619T", + "A10621C", + "T10633G", + "C10637T", + "A10641T", + "C10655T", + "A10660T", + "C10661T", + "G10666A", + "A10669G", + "C10672A", + "A10675G", + "G10676T", + "C10678G", + "A10681G", + "G10696C", + "A10708T", + "A10711G", + "A10714C", + "A10733C", + "A10734G", + "A10735T", + "C10738T", + "A10740G", + "A10741G", + "A10744T", + "A10747G", + "A10750G", + "A10755G", + "C10762T", + "C10765T", + "T10768G", + "C10777T", + "A10780T", + "A10781G", + "A10785T", + "A10796G", + "C10798G", + "T10804G", + "A10822T", + "T10828C", + "G10835A", + "C10837A", + "A10873G", + "A10876T", + "C10886T", + "A10900G", + "G10930A", + "T10936C", + "A10949T", + "C10966G", + "T10973G", + "A10975G", + "C10978G", + "A10987T", + "T10993C", + "A10996T", + "A11002T", + "C11005G", + "C11011G", + "A11020G", + "A11023G", + "A11026G", + "G11027A", + "A11029C", + "G11039A", + "C11045G", + "A11047G", + "T11051A", + "G11053C", + "G11056C", + "T11059G", + "A11060G", + "A11079G", + "C11083T", + "G11089A", + "G11092T", + "A11104G", + "A11118T", + "T11119C", + "A11130G", + "A11131G", + "T11140C", + "C11143T", + "G11146A", + "T11149C", + "A11152G", + "T11158C", + "A11167C", + "A11173G", + "G11183T", + "C11185T", + "A11189T", + "A11191T", + "A11195T", + "G11198T", + "G11203T", + "C11206T", + "T11209C", + "C11215G", + "A11218G", + "A11233C", + "C11236T", + "A11239G", + "C11240T", + "G11248T", + "A11251T", + "C11254G", + "A11257G", + "A11258G", + "T11260A", + "A11261C", + "A11264G", + "A11267G", + "T11269G", + "C11272T", + "G11276T", + "T11277C", + "T11279C", + "A11285G", + "T11287C", + "G11293T", + "G11299A", + "G11303A", + "G11305A", + "C11306T", + "G11308C", + "C11314A", + "G11317A", + "T11326A", + "A11330T", + "A11341T", + "T11387C", + "A11392T", + "T11403A", + "C11407T", + "T11414C", + "A11416G" + ], + "6k": [ + "T3A", + "V32L", + "T33L", + "L35V", + "V43L", + "A52V" + ], + "CP": [ + "Q5T", + "N17S", + "A20P", + "T30P", + "F33Y", + "M36L", + "K51T", + "D55E", + "T56S", + "P57Q", + "P58G", + "K67R", + "D69N", + "Q71R", + "Q73P", + "A74V", + "N75Q", + "K81M", + "N84G", + "K85E", + "Q86R", + "K92Q", + "K93R", + "G94E", + "P95N", + "P96A", + "P98Q", + "G103A", + "N104K", + "A108V", + "K110N", + "D133E", + "K135R", + "I136T", + "K156R" + ], + "E1": [ + "I31V", + "K61N", + "T65S", + "Y72R", + "K79Q", + "K105R", + "K110R", + "A116S", + "Q120A", + "I135V", + "E139G", + "H140R", + "S141F", + "A144V", + "V145A", + "V154I", + "N155D", + "L161M", + "H196R", + "T207S", + "Y214F", + "A226S", + "K245R", + "K247R", + "K252R", + "E260D", + "I261V", + "H262L", + "I266V", + "A279T", + "E292D", + "T317S", + "S325A", + "V343I", + "A347T", + "Q349E", + "S351T", + "M354V", + "N360S", + "E364D", + "Y373F", + "K377R", + "A395S", + "T397S", + "T399S", + "A400S", + "I420V", + "I421L", + "I422V", + "I423V", + "V426S", + "T429A", + "M433I", + "V435I", + "L436F", + "N438K", + "N442K" + ], + "E2": [ + "E3D", + "L47I", + "N60S", + "G63R", + "D69N", + "I77V", + "A106P", + "D117E", + "S118H", + "S122L", + "K130R", + "N160H", + "R161H", + "S172L", + "L178M", + "M181L", + "S184G", + "V188I", + "A192T", + "S195T", + "V196A", + "L197F", + "T205A", + "I211V", + "N212S", + "A214V", + "N218T", + "A224T", + "R230H", + "L231M", + "A247P", + "D249E", + "E263D", + "K265R", + "M275V", + "T277S", + "K286R", + "K290R", + "N291H", + "H299G", + "P304S", + "E305G", + "Y306H", + "S312T", + "A315V", + "V316T", + "S320T", + "F338Y", + "N347D", + "V355M", + "I356V", + "T357V", + "M365T", + "S366P", + "S372T", + "I373L", + "V378I", + "T379A", + "V382A", + "A383S", + "T386A", + "F389L", + "V394A", + "A406V", + "Q407K", + "F410V", + "C411Y", + "V414I" + ], + "E3": [ + "T13S", + "R25H", + "E29A", + "M33L", + "N40R", + "E45D", + "K57A", + "K58R" + ], + "nsP1": [ + "E56D", + "D59E", + "F94Y", + "A98S", + "C104S", + "E106A", + "K117T", + "E131D", + "Y143F", + "E144S", + "Q146H", + "V147I", + "N167E", + "T203S", + "S236T", + "N237D", + "D253E", + "H270N", + "N271S", + "V386I", + "L408M", + "I441V", + "I455V", + "S458C", + "E461D", + "E473A", + "Q475R", + "P478T", + "P479A", + "E485D", + "Q488E", + "K491R", + "N492S", + "K501Q", + "E502A", + "E505A", + "A508E" + ], + "nsP2": [ + "T16P", + "K57R", + "H109N", + "S126E", + "E127D", + "K138R", + "E145D", + "L146Q", + "S148H", + "I218M", + "K223R", + "G226N", + "D228E", + "I230S", + "P245S", + "I251V", + "K272R", + "F295Y", + "K335R", + "K338P", + "D352E", + "N373H", + "I375V", + "A403S", + "I420V", + "P439A", + "T443S", + "K458Q", + "L461M", + "D465A", + "V485I", + "K487R", + "I491V", + "D492T", + "D502G", + "M555R", + "E561D", + "R568H", + "R581Q", + "N586S", + "T587S", + "Y593F", + "R596C", + "S604R", + "H617Q", + "P619R", + "A624G", + "V626I", + "S627G", + "K630R", + "K640Q", + "M641A", + "T647V", + "E653D", + "H654N", + "T658N", + "F659Y", + "G669S", + "V671I", + "Y674F", + "K686R", + "K741R", + "V750T", + "K767R", + "S787A" + ], + "nsP3": [ + "T13L", + "G31S", + "K39R", + "F41Y", + "S44N", + "K59Q", + "A61P", + "A62L", + "I65V", + "K83R", + "I92V", + "V96I", + "N100H", + "I106V", + "I113V", + "L125F", + "T134S", + "V162T", + "I167L", + "A171E", + "V173L", + "A174C", + "M218I", + "I227V", + "T229A", + "E230D", + "L237M", + "T260M", + "S263T", + "T303A", + "S311A", + "H312C", + "Y323H", + "L330I", + "P331Q", + "K332T", + "A334T", + "P335V", + "T336Q", + "E338S", + "A339G", + "P340L", + "E341Q", + "L342Q", + "P343C", + "E345V", + "T349D", + "E350G", + "G351S", + "E354S", + "T355I", + "A357V", + "I359L", + "N360D", + "G363S", + "T364D", + "E365N", + "R367I", + "A368L", + "E370G", + "T371P", + "D373G", + "I374G", + "E375A", + "E377V", + "E378R", + "E379L", + "D380E", + "S381G", + "S383D", + "L384W", + "P385S", + "S386T", + "S390G", + "H391S", + "Q392L", + "Q394R", + "V396I", + "E397G", + "V400I", + "A402V", + "P404E", + "S405F", + "F407V", + "S408R", + "S410P", + "W411L", + "S412A", + "I413L", + "A416V", + "D418G", + "F419P", + "D420V", + "D422I", + "S423K", + "V424A", + "S425E", + "L427H", + "D428A", + "T429E", + "L430Q", + "G432W", + "I435A", + "I436V", + "T444H", + "N445L", + "C446R", + "C447R", + "F448V", + "H468R", + "V471T", + "K473M", + "T476S", + "A486P", + "S487A", + "S488F", + "R489E", + "S491G", + "L492P", + "S520C", + "R523Q", + "S524L", + "V527S", + "N529R", + "V536S", + "R539V", + "V546I" + ], + "nsP4": [ + "I47A", + "P56A", + "T57S", + "P58Q", + "Q65L", + "R68K", + "K78N", + "K89R", + "A90S", + "K93R", + "S109C", + "N111D", + "S115A", + "V121I", + "E130D", + "I141M", + "A176T", + "K241R", + "E249T", + "Y268F", + "N273D", + "Q361L", + "H362N", + "S411T", + "A537V", + "A554Q", + "N557C", + "A563E", + "S579A", + "I582V", + "T586A", + "S590G", + "E593Q", + "S596R", + "T604C" + ] + }, + "labels": { + "aa": "6k: T3A, V32L, T33L, L35V, V43L, A52V; CP: Q5T, N17S, A20P, T30P, F33Y, M36L, K51T, D55E, T56S, P57Q, P58G, K67R, D69N, Q71R, Q73P, A74V, N75Q, K81M, N84G, K85E, Q86R, K92Q, K93R, G94E, P95N, P96A, P98Q, G103A, N104K, A108V, K110N, D133E, K135R, I136T, K156R; E1: I31V, K61N, T65S, Y72R, K79Q, K105R, K110R, A116S, Q120A, I135V, E139G, H140R, S141F, A144V, V145A, V154I, N155D, L161M, H196R, T207S, Y214F, A226S, K245R, K247R, K252R, E260D, I261V, H262L, I266V, A279T, E292D, T317S, S325A, V343I, A347T, Q349E, S351T, M354V, N360S, E364D, Y373F, K377R, A395S, T397S, T399S, A400S, I420V, I421L, I422V, I423V, V426S, T429A, M433I, V435I, L436F, N438K, N442K; E2: E3D, L47I, N60S, G63R, D69N, I77V, A106P, D117E, S118H, S122L, K130R, N160H, R161H, S172L, L178M, M181L, S184G, V188I, A192T, S195T, V196A, L197F, T205A, I211V, N212S, A214V, N218T, A224T, R230H, L231M, A247P, D249E, E263D, K265R, M275V, T277S, K286R, K290R, N291H, H299G, P304S, E305G, Y306H, S312T, A315V, V316T, S320T, F338Y, N347D, V355M, I356V, T357V, M365T, S366P, S372T, I373L, V378I, T379A, V382A, A383S, T386A, F389L, V394A, A406V, Q407K, F410V, C411Y, V414I; E3: T13S, R25H, E29A, M33L, N40R, E45D, K57A, K58R; nsP1: E56D, D59E, F94Y, A98S, C104S, E106A, K117T, E131D, Y143F, E144S, Q146H, V147I, N167E, T203S, S236T, N237D, D253E, H270N, N271S, V386I, L408M, I441V, I455V, S458C, E461D, E473A, Q475R, P478T, P479A, E485D, Q488E, K491R, N492S, K501Q, E502A, E505A, A508E; nsP2: T16P, K57R, H109N, S126E, E127D, K138R, E145D, L146Q, S148H, I218M, K223R, G226N, D228E, I230S, P245S, I251V, K272R, F295Y, K335R, K338P, D352E, N373H, I375V, A403S, I420V, P439A, T443S, K458Q, L461M, D465A, V485I, K487R, I491V, D492T, D502G, M555R, E561D, R568H, R581Q, N586S, T587S, Y593F, R596C, S604R, H617Q, P619R, A624G, V626I, S627G, K630R, K640Q, M641A, T647V, E653D, H654N, T658N, F659Y, G669S, V671I, Y674F, K686R, K741R, V750T, K767R, S787A; nsP3: T13L, G31S, K39R, F41Y, S44N, K59Q, A61P, A62L, I65V, K83R, I92V, V96I, N100H, I106V, I113V, L125F, T134S, V162T, I167L, A171E, V173L, A174C, M218I, I227V, T229A, E230D, L237M, T260M, S263T, T303A, S311A, H312C, Y323H, L330I, P331Q, K332T, A334T, P335V, T336Q, E338S, A339G, P340L, E341Q, L342Q, P343C, E345V, T349D, E350G, G351S, E354S, T355I, A357V, I359L, N360D, G363S, T364D, E365N, R367I, A368L, E370G, T371P, D373G, I374G, E375A, E377V, E378R, E379L, D380E, S381G, S383D, L384W, P385S, S386T, S390G, H391S, Q392L, Q394R, V396I, E397G, V400I, A402V, P404E, S405F, F407V, S408R, S410P, W411L, S412A, I413L, A416V, D418G, F419P, D420V, D422I, S423K, V424A, S425E, L427H, D428A, T429E, L430Q, G432W, I435A, I436V, T444H, N445L, C446R, C447R, F448V, H468R, V471T, K473M, T476S, A486P, S487A, S488F, R489E, S491G, L492P, S520C, R523Q, S524L, V527S, N529R, V536S, R539V, V546I; nsP4: I47A, P56A, T57S, P58Q, Q65L, R68K, K78N, K89R, A90S, K93R, S109C, N111D, S115A, V121I, E130D, I141M, A176T, K241R, E249T, Y268F, N273D, Q361L, H362N, S411T, A537V, A554Q, N557C, A563E, S579A, I582V, T586A, S590G, E593Q, S596R, T604C" + } + }, + "children": [ + { + "name": "MT586033.1", + "node_attrs": { + "div": 1.0494420214141689, + "num_date": { + "value": 1967.0013698630137, + "confidence": [ + 1967.0013698630137, + 1967.898904109589 + ] + }, + "author": { + "author": "Mikryukova,T.P., Ternovoy,V.A., Protopopova,E.V., Svyantchenko,V.A., Shvalov,A.N. and Loktev,V.B.", + "value": "Mikryukova,T.P., Ternovoy,V.A., Protopopova,E.V., Svyantchenko,V.A., Shvalov,A.N. and Loktev,V.B." + }, + "country": { + "value": "Brazil", + "confidence": { + "Brazil": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Anopheles nimbus; 2 passages on Vero cells" + }, + "year": { + "value": "1961", + "confidence": { + "1961": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IV_PIXV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Amazon_Basin" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1642A", + "C7713A", + "A9829T", + "T10183G", + "G10858C" + ], + "CP": [ + "T51K" + ], + "E1": [ + "N61K" + ], + "nsP1": [ + "A533E" + ] + }, + "labels": { + "aa": "CP: T51K; E1: N61K; nsP1: A533E" + } + } + }, + { + "name": "AF075256.1", + "node_attrs": { + "div": 1.0492985214141688, + "num_date": { + "value": 1961.9986301369863, + "confidence": [ + 1961.9590086394842, + 1961.9986301369863 + ] + }, + "author": { + "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", + "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." + }, + "country": { + "value": "Brazil", + "confidence": { + "Brazil": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1961", + "confidence": { + "1961": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IV_PIXV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Amazon_Basin" + } + }, + "branch_attrs": { + "mutations": {} + } + } + ] + }, + { + "name": "NODE_0000078", + "node_attrs": { + "div": 0.6237262914141688, + "num_date": { + "value": 1915.522543833916, + "confidence": [ + 1911.08745765477, + 1918.4251466761384 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.07296494847192109, + "Panama": 0.13941161523326806, + "USA": 0.07523488964130821, + "Venezuela": 0.2533127786403622 + }, + "entropy": 2.5173745318768974 + }, + "year": { + "value": "1997", + "confidence": { + "1971": 0.02222248900596758, + "1973": 0.02208655268594117, + "1997": 0.022437956159220066, + "2017": 0.022179863896491587 + }, + "entropy": 3.8498270104729437 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999484302934652 + }, + "entropy": 0.004419386236681846 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A28C", + "A32T", + "T44A", + "G74A", + "A209G", + "T284C", + "A323G", + "A395G", + "C432A", + "A433C", + "G434T", + "G449C", + "T452C", + "C467T", + "C491T", + "C503A", + "A512T", + "C524A", + "C606T", + "C620T", + "C632T", + "A653C", + "C657T", + "C707A", + "G710T", + "C717A", + "A759G", + "A762C", + "T767C", + "T822C", + "A830T", + "G833A", + "C854A", + "G1067A", + "T1085A", + "C1091T", + "T1109G", + "T1142A", + "T1172C", + "T1178A", + "C1194T", + "G1235A", + "C1238T", + "G1274A", + "A1315G", + "G1358A", + "T1364C", + "C1374A", + "C1375A", + "A1403C", + "G1440A", + "A1441C", + "A1450G", + "C1466G", + "A1469T", + "C1505A", + "A1529T", + "G1535T", + "C1581T", + "C1587G", + "C1626T", + "A1643T", + "A1695G", + "G1706C", + "A1733T", + "T1736G", + "G1745A", + "C1766G", + "G1781C", + "T1841C", + "C1850A", + "C1877T", + "T1880A", + "C1888A", + "G1898A", + "C1967T", + "G1971A", + "T1972C", + "C1973A", + "C1994A", + "A2021G", + "A2057C", + "C2093T", + "T2111C", + "A2123T", + "G2129C", + "G2138A", + "C2162A", + "A2163C", + "A2171C", + "G2257A", + "C2291T", + "C2300A", + "G2323A", + "T2338A", + "G2342C", + "C2345A", + "C2364T", + "G2378A", + "G2429C", + "C2436A", + "C2438A", + "T2447A", + "G2454A", + "T2456A", + "A2458G", + "A2483G", + "G2489A", + "G2492A", + "G2558C", + "G2567A", + "T2603G", + "G2630A", + "G2660C", + "G2693A", + "A2786T", + "G2810A", + "C2825T", + "T2891C", + "G2924A", + "T2942A", + "C2972T", + "C2985A", + "A3022G", + "T3041G", + "G3048A", + "G3132A", + "A3176C", + "A3197G", + "T3230C", + "G3269A", + "G3308T", + "A3320G", + "C3354A", + "G3365A", + "G3383C", + "T3397A", + "G3398T", + "G3438A", + "G3449A", + "G3479A", + "C3509T", + "T3530C", + "C3543A", + "G3545A", + "T3566G", + "C3581A", + "G3584C", + "C3600T", + "C3611G", + "G3659A", + "G3680A", + "T3740C", + "T3788C", + "C3812T", + "A3830G", + "T3845C", + "G3890A", + "G3917A", + "A3935T", + "A3947C", + "A3974G", + "A3986C", + "C4007T", + "G4016C", + "C4043T", + "G4074A", + "A4075C", + "C4094T", + "A4097T", + "T4103C", + "G4108A", + "C4145T", + "G4160A", + "C4169T", + "C4170T", + "G4172A", + "C4178G", + "G4184A", + "A4196G", + "G4199A", + "G4214A", + "G4220A", + "C4223T", + "A4241G", + "C4335A", + "G4400A", + "C4412T", + "C4454A", + "G4478A", + "C4480T", + "A4497G", + "G4542T", + "T4559G", + "C4595T", + "C4596T", + "C4601T", + "C4624G", + "T4640C", + "T4658C", + "G4691A", + "A4734G", + "C4769T", + "A4853T", + "T4856A", + "A4868G", + "G4892A", + "T4919A", + "T4964C", + "G4988A", + "G5014A", + "C5022G", + "A5025G", + "C5028A", + "G5033A", + "A5037G", + "G5042C", + "G5046A", + "A5048T", + "A5054G", + "T5056C", + "G5057A", + "G5067A", + "A5094C", + "A5110C", + "A5112G", + "C5127G", + "G5177A", + "C5185T", + "A5193G", + "G5200C", + "A5208G", + "T5215A", + "C5236G", + "G5238C", + "C5248T", + "T5258A", + "A5267C", + "C5300T", + "G5301T", + "A5318C", + "G5354C", + "G5368C", + "A5376G", + "T5377C", + "T5398C", + "C5433A", + "C5469T", + "T5484A", + "A5485G", + "T5495G", + "T5516C", + "T5522A", + "T5573A", + "C5591G", + "T5606C", + "T5607C", + "G5672A", + "G5805T", + "G5858A", + "T5915C", + "A5924C", + "G5925A", + "A5946C", + "G5954A", + "T5984G", + "C6011T", + "T6032G", + "T6053C", + "G6055A", + "G6059C", + "G6092A", + "A6101G", + "G6218A", + "A6254G", + "G6263A", + "T6269G", + "A6281G", + "T6326C", + "A6329G", + "G6350A", + "A6395G", + "A6459G", + "C6460T", + "C6518T", + "C6522T", + "C6526A", + "C6542A", + "G6569A", + "C6665T", + "G6698A", + "A6713G", + "A6787C", + "A6795T", + "G6830A", + "A6892C", + "A6911T", + "G6926C", + "C6945T", + "C6992A", + "C7109G", + "G7130A", + "G7133A", + "A7205G", + "A7208C", + "C7226T", + "C7229T", + "A7239T", + "G7241C", + "G7262T", + "T7268A", + "G7322A", + "C7331T", + "C7335A", + "C7337G", + "C7340A", + "C7347T", + "C7382A", + "C7388T", + "G7389C", + "G7409A", + "G7424A", + "C7491T", + "A7504C", + "C7550T", + "C7560A", + "A7594G", + "C7660T", + "G7684A", + "G7717A", + "A7727G", + "A7735T", + "C7769G", + "A7773C", + "G7780A", + "C7782A", + "A7839C", + "C7846G", + "C7861A", + "T7897A", + "A8026C", + "C8043T", + "T8101G", + "C8104A", + "G8227C", + "C8272G", + "G8275C", + "G8302A", + "T8338C", + "A8341G", + "C8362T", + "T8395G", + "G8440A", + "G8449T", + "C8477T", + "A8482C", + "C8494T", + "C8533A", + "G8557A", + "C8581T", + "G8602C", + "A8616G", + "C8638G", + "A8704C", + "A8710C", + "C8722T", + "G8744T", + "T8758C", + "C8767T", + "A8781C", + "A8782C", + "G8804C", + "T8809G", + "C8818T", + "G8827C", + "C8845T", + "A8872G", + "G8911A", + "C8958A", + "C8986T", + "C9010A", + "G9018A", + "G9070C", + "C9073G", + "A9094T", + "C9095T", + "C9100G", + "G9116T", + "G9124T", + "A9136T", + "A9164G", + "C9179A", + "A9181G", + "A9187C", + "A9209C", + "A9216G", + "A9235G", + "G9295C", + "A9304G", + "G9316A", + "A9339T", + "C9341T", + "C9343G", + "G9389A", + "G9391A", + "T9394C", + "A9404C", + "A9430T", + "C9436T", + "C9460A", + "G9478T", + "C9508T", + "C9517T", + "C9547T", + "C9604T", + "G9668C", + "G9679A", + "G9706C", + "A9783G", + "T9785A", + "G9841C", + "C9856T", + "A9934C", + "G9958C", + "C9974G", + "G10030A", + "G10069T", + "G10082C", + "C10124G", + "C10163A", + "T10165G", + "G10208C", + "G10211A", + "C10213T", + "G10237A", + "C10285T", + "T10292A", + "A10315G", + "C10344T", + "A10405C", + "T10408A", + "C10441T", + "T10504A", + "A10531C", + "G10550A", + "C10600T", + "A10631T", + "C10636T", + "G10657A", + "A10660G", + "A10682G", + "C10684G", + "A10714G", + "T10771C", + "C10784T", + "G10787A", + "T10788C", + "G10789A", + "A10892G", + "A10893C", + "G10930C", + "T11014C", + "T11024G", + "T11028C", + "T11035G", + "C11054G", + "T11055C", + "A11074T", + "G11101C", + "C11107A", + "A11114T", + "G11146C", + "T11149G", + "A11173C", + "C11206G", + "T11209A", + "A11278G", + "A11284T", + "A11333T", + "T11383C", + "T11423C" + ], + "6k": [ + "L48V" + ], + "CP": [ + "T56A", + "P70A", + "Q71P", + "A74D", + "K93T", + "N100K", + "A161V" + ], + "E1": [ + "A28P", + "L42V", + "L55M", + "A70P", + "A71T", + "S98T", + "A115V", + "V184I", + "T211S", + "T228A", + "H262Y", + "V263T", + "N298A", + "S342A", + "V343A", + "D345E", + "L352A", + "T372S" + ], + "E2": [ + "K18R", + "V61L", + "K73T", + "E81Q", + "T132N", + "H149Q", + "R152H", + "A185S", + "Q187H", + "K201E", + "Q206K", + "K216Q", + "N218S", + "Y259F", + "V276I", + "H299Q", + "E305D", + "V369L", + "Q407R", + "L408M" + ], + "E3": [ + "M21I" + ], + "nsP1": [ + "Q130T", + "L225M", + "I239V", + "I240L", + "H270Q", + "K424R", + "P444N", + "D466T", + "K469R", + "D474E", + "Q475H", + "E495D", + "P515A" + ], + "nsP2": [ + "T16A", + "E19D", + "P80Q", + "V108T", + "E158D", + "R203K", + "R225K", + "I230N", + "V269I", + "K270R", + "L446M", + "K458R", + "A467T", + "A495T", + "L583Y", + "V597I", + "D639E", + "H654Q" + ], + "nsP3": [ + "E15T", + "R26K", + "T150M", + "I156V", + "A171S", + "T198S", + "I235V", + "R328K", + "P331A", + "K332E", + "P333T", + "T336A", + "E337D", + "A339T", + "L342P", + "D346N", + "T355P", + "N360T", + "T361A", + "P366A", + "M382I", + "P385L", + "S388G", + "S390T", + "M393V", + "L395Q", + "A402G", + "A403P", + "A406V", + "V424F", + "C446S", + "M449A", + "V456A", + "H468N", + "P480S", + "*485R" + ], + "nsP4": [ + "A35S", + "V75I", + "K82Q", + "R118K", + "T253V", + "T275N", + "H362P", + "S365C", + "Q397P", + "T513S", + "A563P", + "H597Y", + "D601A" + ] + }, + "labels": { + "aa": "6k: L48V; CP: T56A, P70A, Q71P, A74D, K93T, N100K, A161V; E1: A28P, L42V, L55M, A70P, A71T, S98T, A115V, V184I, T211S, T228A, H262Y, V263T, N298A, S342A, V343A, D345E, L352A, T372S; E2: K18R, V61L, K73T, E81Q, T132N, H149Q, R152H, A185S, Q187H, K201E, Q206K, K216Q, N218S, Y259F, V276I, H299Q, E305D, V369L, Q407R, L408M; E3: M21I; nsP1: Q130T, L225M, I239V, I240L, H270Q, K424R, P444N, D466T, K469R, D474E, Q475H, E495D, P515A; nsP2: T16A, E19D, P80Q, V108T, E158D, R203K, R225K, I230N, V269I, K270R, L446M, K458R, A467T, A495T, L583Y, V597I, D639E, H654Q; nsP3: E15T, R26K, T150M, I156V, A171S, T198S, I235V, R328K, P331A, K332E, P333T, T336A, E337D, A339T, L342P, D346N, T355P, N360T, T361A, P366A, M382I, P385L, S388G, S390T, M393V, L395Q, A402G, A403P, A406V, V424F, C446S, M449A, V456A, H468N, P480S, *485R; nsP4: A35S, V75I, K82Q, R118K, T253V, T275N, H362P, S365C, Q397P, T513S, A563P, H597Y, D601A" + } + }, + "children": [ + { + "name": "NODE_0000098", + "node_attrs": { + "div": 0.8437352814141688, + "num_date": { + "value": 1955.5508265148476, + "confidence": [ + 1954.779641561946, + 1956.0766468683737 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Guatemala": 0.0885861340568985, + "Mexico": 0.30927994007039383, + "Panama": 0.49305701624768106, + "Venezuela": 0.018536270768566492 + }, + "entropy": 1.447457627602625 + }, + "year": { + "value": "1961", + "confidence": { + "1961": 0.03355884974579916, + "1962": 0.032596132579867654, + "1963": 0.027548824936596803, + "1967": 0.02230677366095561 + }, + "entropy": 3.8428691663502517 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999961563225115 + }, + "entropy": 5.177079393036802e-05 + }, + "place_of_collection": { + "value": "Almirante" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T33A", + "C36G", + "A83C", + "T95A", + "T143G", + "C180T", + "T185A", + "C248T", + "G275A", + "T281C", + "T321C", + "C326T", + "G359A", + "A365T", + "C401T", + "A404G", + "C406A", + "C407A", + "G428C", + "T440G", + "C449T", + "C458T", + "T462A", + "A464C", + "C470A", + "A472T", + "A476G", + "G479C", + "T488A", + "T491G", + "C494T", + "A503G", + "A524G", + "A539G", + "T545C", + "C566T", + "C575A", + "C584T", + "T590C", + "T593C", + "A623C", + "C629T", + "T632G", + "C678T", + "T695G", + "T725C", + "A739T", + "C762T", + "A764G", + "T773A", + "C776A", + "A798C", + "G809C", + "T830C", + "A833T", + "C848T", + "A854G", + "A863T", + "T905C", + "C929T", + "C968T", + "G1034A", + "A1049G", + "T1052C", + "A1079T", + "A1112G", + "C1116T", + "G1139A", + "C1148A", + "T1187C", + "C1190T", + "C1191T", + "A1202C", + "C1208A", + "G1211A", + "G1223A", + "G1241A", + "G1265A", + "C1266T", + "A1274T", + "A1277G", + "A1283C", + "C1301T", + "T1313C", + "T1334A", + "C1346A", + "G1349A", + "C1361G", + "A1370G", + "G1373A", + "A1421C", + "A1439G", + "A1455C", + "G1466A", + "A1468C", + "A1470G", + "A1471T", + "G1475C", + "C1477G", + "G1478A", + "T1484C", + "A1499C", + "A1523G", + "C1526G", + "G1541A", + "G1556A", + "T1560C", + "G1562C", + "C1563A", + "C1572T", + "T1580G", + "G1584T", + "T1589C", + "T1595A", + "C1604T", + "A1605G", + "T1607A", + "A1613G", + "C1616A", + "T1619C", + "C1622T", + "G1628A", + "G1646A", + "C1655T", + "G1658C", + "G1661A", + "A1664C", + "C1668A", + "G1676C", + "T1685C", + "C1694T", + "G1703A", + "G1709A", + "T1730C", + "G1736A", + "C1742A", + "T1748G", + "A1749C", + "A1763G", + "T1764A", + "C1772T", + "T1784A", + "C1793A", + "G1799A", + "A1802C", + "C1814G", + "C1815A", + "A1820G", + "G1835A", + "A1838G", + "T1847C", + "G1859A", + "T1874A", + "G1889A", + "G1904C", + "C1919A", + "A1937C", + "C1955T", + "C1956T", + "G1958A", + "A1973G", + "A1979T", + "A2000G", + "A2011G", + "C2027T", + "C2036A", + "A2042G", + "G2048A", + "C2057T", + "C2075T", + "A2087G", + "C2090T", + "T2093G", + "C2103T", + "C2111A", + "G2114A", + "G2117T", + "A2120C", + "T2126C", + "C2141T", + "C2154T", + "A2165C", + "G2210T", + "A2213C", + "A2219C", + "C2222G", + "C2231A", + "C2234T", + "A2240G", + "C2252T", + "A2255G", + "C2262T", + "G2267A", + "C2273T", + "A2282G", + "A2285G", + "A2294C", + "A2297G", + "A2318G", + "A2345G", + "T2348A", + "A2384G", + "A2387C", + "C2393T", + "C2394T", + "T2411C", + "T2420C", + "A2426T", + "A2438G", + "G2441C", + "G2444A", + "A2457C", + "T2462C", + "G2468A", + "C2480T", + "G2483T", + "G2495A", + "C2498T", + "C2507T", + "C2520T", + "T2531C", + "T2546A", + "G2552T", + "C2585T", + "T2588C", + "A2591G", + "A2600G", + "C2606A", + "C2615A", + "A2632G", + "G2645T", + "A2653G", + "G2657C", + "A2658T", + "G2663A", + "G2669A", + "C2681T", + "C2684A", + "C2690T", + "G2699A", + "T2708C", + "C2709T", + "T2720A", + "G2732A", + "G2738T", + "G2744A", + "T2756C", + "C2765A", + "G2780C", + "C2792A", + "C2799T", + "C2804G", + "A2807G", + "C2822A", + "T2846C", + "C2850T", + "C2882G", + "C2886T", + "G2900A", + "G2905A", + "C2909T", + "C2921T", + "A2924T", + "C2927A", + "A2948C", + "G2954C", + "A2966C", + "A2970G", + "T2978C", + "C2981A", + "G2984A", + "A2999G", + "T3008C", + "G3023A", + "T3030C", + "T3047C", + "C3050G", + "C3053T", + "G3071T", + "C3074T", + "G3077C", + "C3086A", + "A3095T", + "G3098A", + "A3104G", + "G3107T", + "C3119G", + "C3125T", + "A3126C", + "G3149A", + "T3158C", + "T3161C", + "C3170T", + "A3185T", + "A3191C", + "A3194T", + "C3200T", + "A3203G", + "G3215A", + "A3224C", + "G3227A", + "G3233A", + "C3243T", + "T3251C", + "T3267C", + "A3269C", + "T3281C", + "C3287T", + "T3308C", + "C3321T", + "A3327C", + "G3329T", + "G3344A", + "A3362T", + "G3368A", + "T3371G", + "G3381A", + "A3389G", + "C3395A", + "T3398C", + "A3416T", + "C3443T", + "C3444T", + "A3459C", + "A3462C", + "A3464C", + "G3467A", + "T3470A", + "A3479C", + "C3482G", + "C3485G", + "C3488A", + "A3492G", + "A3497C", + "C3500T", + "T3518C", + "A3521C", + "A3533G", + "G3536T", + "T3548G", + "G3554A", + "G3557A", + "C3560T", + "G3563T", + "C3575T", + "C3578T", + "C3579T", + "C3584T", + "T3593A", + "G3602A", + "C3609A", + "A3610C", + "G3611A", + "G3617T", + "C3623T", + "A3629G", + "T3632G", + "C3650A", + "A3653C", + "G3654A", + "G3655A", + "G3660C", + "C3665G", + "C3674T", + "T3677C", + "A3680C", + "T3683C", + "T3686A", + "G3692A", + "G3695A", + "C3700A", + "T3704C", + "A3705C", + "A3706G", + "A3707C", + "T3719C", + "A3731G", + "T3737C", + "C3747T", + "T3749G", + "A3767G", + "G3782A", + "C3797T", + "C3803A", + "A3824G", + "A3828C", + "T3854A", + "C3878A", + "G3893A", + "A3899G", + "A3902T", + "C3903A", + "T3904A", + "A3914C", + "A3929C", + "A3940T", + "G3950A", + "G3951A", + "T3956A", + "C3962T", + "C3968A", + "T3983C", + "A4004C", + "A4010G", + "A4013G", + "A4028C", + "G4049A", + "A4055C", + "T4061C", + "T4064A", + "G4070T", + "A4076G", + "G4085A", + "T4100C", + "A4109G", + "A4115G", + "G4122A", + "G4139T", + "A4146C", + "A4147G", + "A4151G", + "T4153A", + "G4157C", + "G4175A", + "G4178A", + "C4181A", + "A4190G", + "G4196T", + "C4197A", + "C4200T", + "G4212A", + "C4213A", + "A4214C", + "G4215T", + "C4244G", + "G4301A", + "C4307A", + "A4313G", + "G4317A", + "C4340T", + "G4346T", + "G4355T", + "C4364T", + "C4367A", + "A4391G", + "C4392T", + "A4403C", + "G4418A", + "A4421G", + "C4433A", + "A4479G", + "A4484G", + "G4490A", + "A4493G", + "A4496C", + "G4544C", + "A4556G", + "G4565A", + "G4577A", + "G4580A", + "G4586A", + "C4625T", + "A4631G", + "G4649T", + "G4655A", + "T4682C", + "C4700T", + "T4711C", + "T4712C", + "A4715T", + "A4736G", + "G4742A", + "C4748T", + "C4772A", + "G4775A", + "G4796A", + "A4802G", + "A4811C", + "T4844C", + "T4853C", + "A4856G", + "A4862G", + "A4865C", + "C4871T", + "C4872T", + "A4883T", + "T4889C", + "G4904T", + "C4907T", + "A4910T", + "C4937A", + "T4940A", + "T4943A", + "C4964G", + "C4967T", + "A4982T", + "G4985T", + "C5000T", + "C5003A", + "C5010A", + "A5027C", + "A5028G", + "A5033T", + "A5039G", + "G5079A", + "G5081T", + "G5083A", + "C5088G", + "T5090C", + "G5100A", + "A5106G", + "T5107C", + "A5109G", + "G5114A", + "A5116C", + "C5122G", + "T5129C", + "A5130T", + "C5134A", + "G5135A", + "C5137A", + "T5138C", + "A5140G", + "G5144A", + "A5158T", + "A5162G", + "G5168A", + "C5174T", + "T5181G", + "A5189C", + "C5192G", + "G5194A", + "A5196G", + "G5198A", + "A5199C", + "C5201A", + "G5213T", + "C5219G", + "G5235C", + "G5237C", + "C5238T", + "C5241G", + "T5243G", + "T5244C", + "C5245A", + "T5246A", + "T5250C", + "A5258G", + "A5275G", + "G5294C", + "C5297G", + "T5301C", + "A5307G", + "C5309G", + "C5315A", + "A5316T", + "G5326C", + "G5327C", + "G5328A", + "C5329A", + "A5331G", + "G5332A", + "T5335C", + "A5344T", + "C5347A", + "G5355T", + "G5358A", + "C5362A", + "T5363C", + "A5365G", + "C5375T", + "G5380A", + "A5382G", + "T5384G", + "T5393C", + "G5399T", + "G5408T", + "T5411C", + "G5414A", + "T5417G", + "G5420A", + "G5424A", + "A5434C", + "C5435T", + "T5444C", + "C5456T", + "A5457G", + "A5459G", + "A5462G", + "C5464G", + "G5468A", + "C5470T", + "T5474C", + "G5475C", + "T5579G", + "C5580T", + "G5588A", + "G5592A", + "A5598C", + "A5600C", + "C5612G", + "C5618T", + "G5621A", + "A5624G", + "C5627T", + "A5630C", + "A5634C", + "G5636A", + "G5651A", + "G5663C", + "A5672C", + "T5690C", + "C5708T", + "T5711C", + "C5717G", + "C5723T", + "G5732A", + "A5738G", + "A5759G", + "G5762A", + "C5766T", + "C5771T", + "G5783A", + "G5798A", + "T5804C", + "A5828G", + "G5829A", + "A5831C", + "A5840G", + "A5846G", + "C5847A", + "A5855G", + "C5870T", + "A5873G", + "C5875A", + "G5876A", + "A5883C", + "C5888T", + "G5909T", + "G5912A", + "A5921G", + "A5936G", + "C5943T", + "G5945A", + "A5948G", + "C5951A", + "C5952T", + "T5960C", + "G5970T", + "A5972T", + "A5978T", + "C5993T", + "C5999G", + "T6005C", + "C6036A", + "T6044C", + "T6047C", + "C6059T", + "A6062T", + "A6065C", + "T6074C", + "G6083T", + "C6095T", + "A6128T", + "T6137C", + "T6143C", + "T6167A", + "C6179T", + "C6185G", + "A6200C", + "C6230A", + "T6233C", + "T6234C", + "G6236C", + "A6239G", + "A6248T", + "A6251G", + "G6254T", + "G6260T", + "G6269A", + "G6296C", + "A6311G", + "C6326G", + "G6329T", + "A6347T", + "C6359T", + "T6362G", + "T6368C", + "G6374A", + "C6380T", + "C6383T", + "G6386A", + "T6392C", + "G6395T", + "A6407G", + "T6410C", + "A6419C", + "A6425G", + "G6426A", + "A6428G", + "C6431T", + "T6446C", + "T6461C", + "T6464C", + "T6470A", + "A6485G", + "A6491G", + "A6515T", + "G6524A", + "A6525G", + "G6536A", + "G6558A", + "A6602G", + "T6605C", + "T6608C", + "C6615A", + "C6620T", + "G6626C", + "G6629A", + "G6632A", + "C6644A", + "T6659G", + "G6662T", + "G6668A", + "C6671T", + "C6677T", + "C6681A", + "T6692G", + "T6699C", + "A6701G", + "C6710T", + "C6714T", + "C6725A", + "C6732T", + "G6734A", + "A6752G", + "C6755T", + "T6767A", + "G6785A", + "T6788A", + "G6791C", + "T6797G", + "C6801T", + "G6803A", + "T6809C", + "C6815A", + "G6821C", + "G6836A", + "A6881C", + "T6884G", + "G6905C", + "G6908A", + "T6911C", + "A6935C", + "G6947A", + "C6950A", + "A6967G", + "A6968G", + "T6989A", + "G7013C", + "A7019C", + "C7022G", + "T7025C", + "T7031G", + "T7037A", + "G7049T", + "A7058G", + "C7059A", + "G7061A", + "C7067A", + "A7073C", + "A7082C", + "A7085G", + "A7094C", + "T7097C", + "A7115G", + "C7118T", + "A7121G", + "G7124T", + "A7133C", + "C7151T", + "T7158C", + "T7181C", + "T7184C", + "C7220T", + "G7232A", + "C7241T", + "C7250A", + "A7268G", + "C7274T", + "C7275T", + "A7280G", + "C7284T", + "T7289C", + "A7310T", + "C7312T", + "C7316T", + "G7349A", + "T7352A", + "G7358A", + "A7361C", + "A7364C", + "C7367G", + "C7389T", + "A7391C", + "C7395T", + "G7403A", + "A7406C", + "A7409C", + "A7415G", + "G7418A", + "C7427A", + "A7430G", + "T7436G", + "T7437G", + "C7463G", + "G7466C", + "A7484G", + "C7490T", + "A7512T", + "T7550A", + "C7567T", + "T7572A", + "C7573T", + "A7597C", + "G7615T", + "C7628A", + "C7630A", + "C7636A", + "T7645A", + "A7648G", + "G7663A", + "T7682C", + "C7687A", + "C7688A", + "C7703T", + "C7720G", + "G7723A", + "C7728T", + "T7735C", + "G7741T", + "T7747G", + "G7769A", + "C7772T", + "A7782G", + "A7784G", + "A7785G", + "G7801A", + "G7807A", + "A7816G", + "A7818T", + "G7819A", + "G7821T", + "G7822A", + "G7828A", + "C7862A", + "A7864T", + "A7871G", + "A7872G", + "G7876A", + "C7884T", + "A7894G", + "C7900G", + "G7909A", + "A7924G", + "A7930G", + "T7933A", + "T7951C", + "G7957T", + "C7960T", + "C7972T", + "T7981A", + "A7993T", + "A8002G", + "C8005T", + "A8012C", + "A8023G", + "C8045T", + "G8048T", + "G8051T", + "T8056C", + "A8095T", + "A8104G", + "T8122C", + "G8143A", + "A8152G", + "T8158C", + "C8182A", + "G8197C", + "G8200A", + "G8206A", + "A8212C", + "T8221C", + "C8236T", + "A8242T", + "G8254T", + "A8269C", + "G8287T", + "A8290C", + "T8293A", + "A8305C", + "C8317A", + "C8329G", + "T8331C", + "C8353A", + "G8359A", + "T8365C", + "T8375A", + "T8389C", + "A8392G", + "C8401T", + "C8413T", + "A8431G", + "T8434C", + "A8446C", + "A8464G", + "G8480T", + "G8492C", + "C8493A", + "G8498A", + "C8506T", + "G8509T", + "C8512T", + "T8518C", + "C8522T", + "G8527C", + "G8536A", + "C8545T", + "G8554A", + "A8555G", + "A8556G", + "A8557C", + "A8563G", + "C8632G", + "T8635C", + "G8638A", + "C8641T", + "G8671A", + "C8680A", + "C8689T", + "G8716C", + "T8731C", + "C8737T", + "A8746G", + "G8755A", + "T8785A", + "C8798T", + "A8800G", + "T8803C", + "A8812T", + "C8813G", + "C8815T", + "A8821C", + "G8830A", + "T8833C", + "T8839A", + "G8840A", + "T8854C", + "C8896T", + "T8914A", + "A8923C", + "T8944C", + "G8950A", + "A8953G", + "C8968A", + "T8983A", + "C8989A", + "A8995G", + "A9004C", + "G9013A", + "C9043T", + "A9046G", + "T9055C", + "C9058G", + "C9070T", + "G9073A", + "C9091T", + "G9097A", + "C9112T", + "C9121T", + "A9130T", + "A9143C", + "G9154A", + "C9169T", + "C9172T", + "A9178C", + "G9190A", + "C9199T", + "A9200T", + "G9202T", + "A9205T", + "A9208G", + "G9211A", + "A9224T", + "A9226C", + "G9235T", + "C9254A", + "T9255C", + "G9256A", + "G9268A", + "C9295T", + "C9310A", + "G9313T", + "A9316C", + "A9322C", + "A9337C", + "T9341G", + "A9349T", + "G9355A", + "G9388T", + "A9391C", + "C9397T", + "A9409T", + "G9424T", + "T9430C", + "A9444T", + "C9454G", + "C9455A", + "C9457G", + "A9460G", + "A9477C", + "T9484C", + "G9490A", + "T9497A", + "G9500A", + "A9502C", + "A9505T", + "C9507T", + "T9508A", + "T9511G", + "T9520C", + "C9523G", + "C9526T", + "C9562T", + "G9568T", + "A9569C", + "T9576A", + "G9581T", + "A9583C", + "A9592T", + "A9601T", + "T9610C", + "T9631C", + "T9634C", + "C9643T", + "C9652T", + "C9667T", + "C9668T", + "G9670A", + "G9676A", + "C9685T", + "C9688G", + "C9691G", + "A9697G", + "T9702C", + "T9703A", + "G9707A", + "G9715A", + "A9719G", + "C9720T", + "C9721A", + "G9727T", + "G9739A", + "A9742G", + "G9743A", + "G9748C", + "T9760C", + "C9763T", + "A9766C", + "C9767T", + "A9772T", + "C9778T", + "G9784T", + "T9793G", + "G9799A", + "G9805T", + "C9806T", + "T9823A", + "G9829A", + "C9841T", + "T9891G", + "A9895G", + "G9901A", + "T9907G", + "G9910A", + "C9913A", + "C9916A", + "C9922A", + "G9925C", + "T9927C", + "G9928T", + "T9931C", + "C9935T", + "C9946T", + "C9987T", + "C10000T", + "C10048T", + "A10054T", + "A10066G", + "C10072T", + "A10078T", + "G10081A", + "A10094G", + "C10095T", + "C10108G", + "T10120A", + "G10132T", + "C10150T", + "A10159C", + "A10192C", + "G10195C", + "A10201G", + "C10204T", + "A10205T", + "C10222G", + "T10225C", + "G10231A", + "A10244T", + "A10246T", + "G10249A", + "G10252A", + "G10258A", + "C10261T", + "T10273G", + "A10276G", + "C10291T", + "T10294G", + "C10300T", + "G10307A", + "G10309A", + "C10318G", + "T10326C", + "C10336A", + "C10339T", + "G10346A", + "T10354C", + "T10357C", + "T10366C", + "C10375T", + "G10390A", + "A10416G", + "C10423A", + "C10426G", + "C10435G", + "A10453G", + "T10459C", + "C10477G", + "A10480G", + "T10481C", + "A10489G", + "A10511T", + "A10513G", + "C10516G", + "T10519C", + "C10523A", + "G10524A", + "A10528G", + "G10549A", + "A10582C", + "A10585C", + "A10597G", + "A10603T", + "T10609C", + "C10615T", + "A10618G", + "A10621G", + "C10624A", + "C10627T", + "T10633C", + "C10637G", + "G10639A", + "T10642C", + "G10651A", + "A10657T", + "G10693C", + "A10708C", + "T10719A", + "G10723A", + "A10750T", + "T10751C", + "G10753C", + "C10762A", + "C10777T", + "A10783T", + "A10789C", + "C10801T", + "C10837T", + "C10846T", + "C10855T", + "A10873C", + "C10886T", + "G10888A", + "A10891T", + "C10894T", + "T10909G", + "G10951A", + "G10957A", + "C10966G", + "G10981A", + "C11011T", + "C11014A", + "C11015T", + "A11026C", + "C11036T", + "A11038G", + "A11047G", + "G11050T", + "G11056T", + "G11062A", + "A11079G", + "T11080C", + "C11083T", + "C11086T", + "A11113G", + "A11116T", + "T11134G", + "C11146T", + "A11167G", + "C11170T", + "A11189T", + "G11206A", + "A11218T", + "C11237T", + "C11254T", + "G11255A", + "T11263A", + "C11272A", + "A11275T", + "G11281A", + "T11284C", + "C11296T", + "A11329G", + "C11331A", + "A11332T", + "A11340G", + "A11348T", + "A11356G", + "T11365G", + "C11366T", + "A11379G", + "T11394A", + "T11395G", + "C11412T" + ], + "6k": [ + "I20S", + "V32A", + "A52V" + ], + "CP": [ + "F4Y", + "A56V", + "A70T", + "P71S", + "D74G", + "N75G", + "Q86L", + "G87V", + "Q101N", + "N104G", + "A108V", + "M151L", + "A163S", + "A164S", + "M257T", + "C272S" + ], + "E1": [ + "T32V", + "T69S", + "T82S", + "V103I", + "M109T", + "D112E", + "A116T", + "E139G", + "T171S", + "R175K", + "L213V", + "F240Y", + "M354I", + "N360S", + "T397S", + "V419I" + ], + "E2": [ + "D39E", + "L84V", + "V93I", + "D117E", + "K194Q", + "T213S", + "T221S", + "L231T", + "D249E", + "L260V", + "M275I", + "Y294F", + "D305A", + "S312T", + "E313N", + "A315V", + "K336Q", + "F338Y", + "A340S", + "I380T", + "V382I", + "T386V", + "V394I", + "F410L" + ], + "E3": [ + "A32S", + "A36H", + "V38I", + "K57G" + ], + "nsP1": [ + "A121E", + "S140T", + "Y143F", + "Y232F", + "M471L", + "H475P", + "K476V", + "E477D", + "P478R", + "E485D", + "A514S", + "T521A" + ], + "nsP2": [ + "S39T", + "H75Q", + "K121R", + "D129E", + "K328R", + "K335R", + "E336D", + "T337S", + "R419K", + "N441D", + "M493L", + "K560H", + "A578T", + "S604R", + "H613Q", + "T615A", + "E616D", + "P644S", + "Q654T", + "E656D", + "G669N", + "V671L", + "P684Q", + "K686R", + "L752K", + "Y764F", + "A768T" + ], + "nsP3": [ + "G31S", + "K39R", + "F41Y", + "A61N", + "A62S", + "V96I", + "M150V", + "I227T", + "E332D", + "T333A", + "E350N", + "G351E", + "P353A", + "A357T", + "I359A", + "T360A", + "D362A", + "T364R", + "R367*", + "A368E", + "P369H", + "E370G", + "E376V", + "L384V", + "D387E", + "G388D", + "T389A", + "T390P", + "Q394H", + "G402R", + "P403S", + "P404A", + "S405Q", + "F407L", + "H415R", + "D422E", + "F424L", + "I426V", + "D428E", + "T429S", + "G432A", + "A433N", + "S434D", + "I435T", + "K438M", + "A439E", + "A442S", + "E443K", + "T444N", + "N445S", + "R450K", + "S451G", + "V465I", + "N468T", + "T476A", + "T478R", + "S480L", + "A482P", + "P517S", + "G521S" + ], + "nsP4": [ + "E43N", + "P58Q", + "A90S", + "E242K", + "N275D", + "V286I", + "C365W", + "K422R", + "I443M", + "A537V", + "H550Q", + "P563S", + "S579A", + "T604S" + ] + }, + "labels": { + "aa": "6k: I20S, V32A, A52V; CP: F4Y, A56V, A70T, P71S, D74G, N75G, Q86L, G87V, Q101N, N104G, A108V, M151L, A163S, A164S, M257T, C272S; E1: T32V, T69S, T82S, V103I, M109T, D112E, A116T, E139G, T171S, R175K, L213V, F240Y, M354I, N360S, T397S, V419I; E2: D39E, L84V, V93I, D117E, K194Q, T213S, T221S, L231T, D249E, L260V, M275I, Y294F, D305A, S312T, E313N, A315V, K336Q, F338Y, A340S, I380T, V382I, T386V, V394I, F410L; E3: A32S, A36H, V38I, K57G; nsP1: A121E, S140T, Y143F, Y232F, M471L, H475P, K476V, E477D, P478R, E485D, A514S, T521A; nsP2: S39T, H75Q, K121R, D129E, K328R, K335R, E336D, T337S, R419K, N441D, M493L, K560H, A578T, S604R, H613Q, T615A, E616D, P644S, Q654T, E656D, G669N, V671L, P684Q, K686R, L752K, Y764F, A768T; nsP3: G31S, K39R, F41Y, A61N, A62S, V96I, M150V, I227T, E332D, T333A, E350N, G351E, P353A, A357T, I359A, T360A, D362A, T364R, R367*, A368E, P369H, E370G, E376V, L384V, D387E, G388D, T389A, T390P, Q394H, G402R, P403S, P404A, S405Q, F407L, H415R, D422E, F424L, I426V, D428E, T429S, G432A, A433N, S434D, I435T, K438M, A439E, A442S, E443K, T444N, N445S, R450K, S451G, V465I, N468T, T476A, T478R, S480L, A482P, P517S, G521S; nsP4: E43N, P58Q, A90S, E242K, N275D, V286I, C365W, K422R, I443M, A537V, H550Q, P563S, S579A, T604S" + } + }, + "children": [ + { + "name": "NODE_0000099", + "node_attrs": { + "div": 0.8779722514141688, + "num_date": { + "value": 1961.7897126520086, + "confidence": [ + 1961.6589126814085, + 1961.9119476004878 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999858444478502 + }, + "entropy": 0.00019724820990169026 + }, + "year": { + "value": "1961", + "confidence": { + "1960": 0.0011247566209555534, + "1961": 0.5185383319163616, + "1962": 0.4575504166590975 + }, + "entropy": 0.8779844999843143 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999999383626 + }, + "entropy": 1.3685917739707693e-08 + }, + "place_of_collection": { + "value": "Almirante" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A31T", + "T32A", + "A74G", + "G170A", + "A188G", + "A299G", + "A320G", + "G329A", + "G415A", + "A470G", + "T536C", + "T554C", + "C689T", + "C822T", + "T1056C", + "A1265C", + "T1287C", + "G1424A", + "G1450A", + "G1472A", + "C1625T", + "G1640A", + "C1696G", + "T1754C", + "G1766A", + "C1775T", + "C1802T", + "T1811A", + "C1916T", + "C1964T", + "T2024C", + "A2036G", + "C2129T", + "C2132T", + "A2183G", + "C2249T", + "A2303C", + "A2324G", + "C2336T", + "T2339C", + "T2369C", + "T2405C", + "C2486T", + "A2489T", + "A2555G", + "C2558T", + "A2594G", + "C2612T", + "G2702A", + "T2705G", + "A2720G", + "C2759T", + "G2906A", + "C2949T", + "G2960A", + "C2963T", + "T2972C", + "A3002G", + "C3026T", + "G3041T", + "C3080T", + "T3217A", + "T3248C", + "C3269T", + "C3272T", + "T3275C", + "C3296T", + "C3359T", + "G3377A", + "T3431C", + "T3491C", + "C3542T", + "A3581G", + "A3588G", + "G3590A", + "T3614G", + "T3623A", + "A3655C", + "A3662G", + "G3668A", + "A3770C", + "A3791G", + "T3797A", + "T3812C", + "C3833T", + "C3845T", + "G3920T", + "C3921T", + "G3938A", + "C3971T", + "T4043C", + "C4133T", + "G4142A", + "A4213G", + "C4226T", + "A4252G", + "A4256G", + "T4262C", + "T4274C", + "A4280G", + "C4328T", + "C4334T", + "C4403T", + "G4427A", + "A4436C", + "G4469A", + "A4553T", + "C4616T", + "T4628C", + "G4634A", + "T4637C", + "A4661G", + "G4673A", + "C4749T", + "C4766T", + "T4790A", + "C4832T", + "C4838T", + "C4841T", + "A4859G", + "A4895G", + "T4898C", + "T4976C", + "C4979T", + "T4994A", + "G5015A", + "A5030G", + "G5031A", + "C5101T", + "A5102G", + "A5114T", + "T5117A", + "A5132C", + "A5168T", + "A5177T", + "G5210A", + "C5234T", + "A5240T", + "A5273C", + "C5285T", + "C5319T", + "C5342T", + "A5347G", + "G5351T", + "T5367G", + "T5373G", + "T5374C", + "G5376T", + "T5385C", + "T5429C", + "C5657T", + "T5726C", + "T5736C", + "G5897A", + "A5904C", + "C5915T", + "G6032A", + "T6215C", + "C6249A", + "A6266C", + "T6272C", + "A6314G", + "C6320T", + "T6351C", + "T6434A", + "T6437A", + "T6455C", + "A6482G", + "T6497C", + "T6518C", + "T6521C", + "C6551T", + "T6560C", + "C6599A", + "G6617A", + "C6635T", + "G6716A", + "C6758T", + "C6773T", + "C6782T", + "G6845T", + "C6890T", + "T6900C", + "T6945C", + "T6965C", + "A6974G", + "C6998T", + "A7067G", + "A7169G", + "A7187G", + "A7232C", + "C7238T", + "G7244A", + "T7262C", + "T7328C", + "A7340G", + "A7382T", + "T7385C", + "C7433T", + "C7442T", + "T7445C", + "C7454T", + "C7472T", + "A7480G", + "A7488G", + "A7559G", + "C7597T", + "C7603T", + "G7672A", + "C7693T", + "G7738A", + "T7768C", + "A7780G", + "C7854A", + "A7863C", + "C7885T", + "A7912T", + "T7925C", + "C7936T", + "A7942C", + "T7948C", + "A7965G", + "C8041T", + "C8053T", + "A8125T", + "C8149T", + "A8179G", + "A8293G", + "C8326T", + "A8353G", + "C8389G", + "C8455T", + "C8461T", + "C8623T", + "A8713G", + "G8719A", + "T8722C", + "C8743T", + "A8824G", + "C8861T", + "T8878A", + "A8884T", + "T8905C", + "A8917C", + "C8923T", + "A8971G", + "C9067T", + "A9154C", + "G9157A", + "C9163T", + "C9277T", + "C9290T", + "C9391T", + "C9394T", + "A9406T", + "C9446T", + "A9571G", + "A9589G", + "A9607C", + "T9730C", + "C9781T", + "T9790C", + "C9862T", + "C9874T", + "C9896T", + "C9955T", + "G10006A", + "C10112T", + "A10144T", + "C10159T", + "C10174T", + "C10186T", + "C10321T", + "T10492C", + "C10522T", + "T10555C", + "A10594T", + "T10600C", + "G10660A", + "C10687T", + "A10711G", + "G10714A", + "T10717G", + "A10735G", + "A10744G", + "C10771T", + "T10828C", + "A10900G", + "C10912T", + "A10921G", + "C10930A", + "A10996G", + "C11026T", + "T11119C", + "G11149T", + "T11290A" + ], + "CP": [ + "P98Q", + "N101T", + "K135R" + ], + "nsP1": [ + "S124N", + "R469K" + ], + "nsP2": [ + "A16G", + "D352E", + "F523Y", + "T647A", + "N669T" + ], + "nsP3": [ + "N61S", + "N74S", + "A334T", + "T357M", + "*367C", + "E379D", + "E439G", + "S446A", + "F448A", + "A449S" + ], + "nsP4": [ + "E593G", + "S596G" + ] + }, + "labels": { + "aa": "CP: P98Q, N101T, K135R; nsP1: S124N, R469K; nsP2: A16G, D352E, F523Y, T647A, N669T; nsP3: N61S, N74S, A334T, T357M, *367C, E379D, E439G, S446A, F448A, A449S; nsP4: E593G, S596G" + } + }, + "children": [ + { + "name": "KC344432.1", + "node_attrs": { + "div": 0.8788217614141688, + "num_date": { + "value": 1961.9986301369863, + "confidence": [ + 1961.848578582786, + 1961.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex taeniopus" + }, + "year": { + "value": "1961", + "confidence": { + "1961": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Almirante" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C278T", + "T657C", + "G2093A", + "A2696C", + "C3161T", + "C4502T", + "A5360G", + "G8117A", + "C8134T", + "G8605T" + ], + "CP": [ + "A186T" + ] + }, + "labels": { + "aa": "CP: A186T" + } + } + }, + { + "name": "AF075252.1", + "node_attrs": { + "div": 0.8793702214141688, + "num_date": { + "value": 1962.0270560260653, + "confidence": [ + 1962.0013698630137, + 1962.2365168635067 + ] + }, + "author": { + "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", + "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1962", + "confidence": { + "1962": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Almirante" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G1838A", + "C2694T", + "G2811A", + "C2883T", + "T3074C", + "C3191T", + "T3743C", + "A5315T", + "A6056G", + "T7792C", + "T9105C", + "T10213C", + "T10627C", + "G10892A", + "C11423T" + ], + "E1": [ + "A298T" + ], + "E2": [ + "M181T" + ], + "nsP2": [ + "P349S", + "G388S" + ], + "nsP3": [ + "E428D" + ] + }, + "labels": { + "aa": "E1: A298T; E2: M181T; nsP2: P349S, G388S; nsP3: E428D" + } + } + } + ] + }, + { + "name": "NODE_0000100", + "node_attrs": { + "div": 0.8768443414141688, + "num_date": { + "value": 1962.192299072225, + "confidence": [ + 1961.9373094839852, + 1962.3929574792533 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Guatemala": 0.20979606451805247, + "Mexico": 0.7752419842228504, + "Panama": 0.009709320851655656 + }, + "entropy": 0.610969922861697 + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.43637723819645013, + "1964": 0.014436845245664166, + "1967": 0.1720389072415733, + "1968": 0.04266550615370083 + }, + "entropy": 2.4804347856354285 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999927889758 + }, + "entropy": 1.4239881832217812e-07 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T149C", + "T161C", + "A200G", + "T266C", + "T378C", + "C425T", + "C479T", + "T578C", + "T606C", + "C692T", + "G731A", + "C755T", + "T758C", + "A947G", + "T953C", + "T1028C", + "C1151T", + "C1172T", + "T1175C", + "T1238C", + "A1271G", + "G1292A", + "T1340C", + "C1430T", + "G1451A", + "G1457A", + "C1476A", + "C1484A", + "T1493C", + "A1508G", + "T1581C", + "A1616G", + "A1637G", + "T1643G", + "C1691T", + "A1724G", + "T1733C", + "G1751A", + "A1778G", + "C1781T", + "A1817G", + "G1826A", + "A1835T", + "C1841T", + "T1865C", + "A1874G", + "C1883T", + "T1895C", + "C1928T", + "C1937T", + "C1949T", + "T1976C", + "T1997C", + "C2006T", + "G2021A", + "C2039T", + "T2075G", + "G2096A", + "G2102T", + "C2147T", + "G2150A", + "C2165T", + "C2180T", + "C2192T", + "T2252A", + "A2258G", + "A2378G", + "A2459C", + "A2492G", + "C2642T", + "A2654G", + "C2657T", + "T2666C", + "T2681A", + "C2723T", + "G2837T", + "G2876A", + "C2894G", + "A2945G", + "C2957G", + "G3005A", + "G3062A", + "C3077T", + "C3101T", + "C3113A", + "C3126T", + "C3155T", + "C3224T", + "A3239T", + "A3254C", + "G3266A", + "C3383T", + "C3417T", + "C3464T", + "C3497T", + "C3512T", + "C3530T", + "G3539A", + "A3574G", + "G3618T", + "T3641C", + "T3671C", + "T3689C", + "G3701A", + "T3713C", + "C3756T", + "A3803G", + "C3821T", + "A3878G", + "C3879A", + "A3896G", + "C3914T", + "C3947T", + "A3953G", + "T3965C", + "C3995T", + "T4007C", + "G4011A", + "C4025T", + "C4037T", + "A4040G", + "T4088C", + "A4112C", + "A4224C", + "T4229C", + "T4310C", + "C4319T", + "T4349C", + "A4385G", + "C4416T", + "T4439C", + "C4485T", + "A4580T", + "T4583C", + "C4622T", + "C4667T", + "A4709T", + "G4754T", + "C4760T", + "T4778C", + "C4824T", + "C4865T", + "C4961T", + "G4991A", + "T5006C", + "C5034T", + "G5040A", + "C5094T", + "A5100T", + "G5112A", + "G5127T", + "A5165G", + "T5180C", + "C5195T", + "T5213C", + "A5225T", + "C5303T", + "C5327T", + "A5394C", + "C5458T", + "C5477T", + "G5591A", + "T5611C", + "C5630T", + "C5645T", + "G5654A", + "C5669T", + "T5699C", + "A5795G", + "T5942C", + "T5964C", + "C5996T", + "T6008C", + "G6080T", + "T6110G", + "C6144T", + "C6161T", + "C6170T", + "A6182G", + "T6260C", + "A6338G", + "A6449G", + "T6473C", + "A6494G", + "T6500C", + "G6587A", + "C6680T", + "G6686A", + "C6687T", + "T6704C", + "T6719C", + "T6728C", + "C6809A", + "T6953C", + "A6992G", + "C6999T", + "C7004T", + "C7019T", + "C7028T", + "T7079C", + "T7124C", + "C7142T", + "G7205T", + "A7253T", + "T7347C", + "A7352G", + "C7361T", + "C7373T", + "C7376G", + "T7400C", + "T7478C", + "A7492G", + "C7493T", + "T7585C", + "G7622A", + "T7627C", + "C7642T", + "C7661T", + "A7684G", + "C7770A", + "T7813C", + "A7890G", + "A7967G", + "T7996C", + "T8000C", + "T8032C", + "G8065A", + "C8074T", + "C8128T", + "C8137T", + "C8269T", + "C8281T", + "T8308C", + "A8314G", + "C8323T", + "G8341A", + "T8362C", + "T8368C", + "T8435A", + "T8449C", + "T8581C", + "C8594T", + "T8647C", + "C8695T", + "C8716T", + "G8728A", + "T8737A", + "C8770T", + "A8797G", + "A8806G", + "C8827T", + "A8830T", + "C8854A", + "C8860T", + "T8869C", + "C8926T", + "C8929T", + "C8935T", + "C8956T", + "T8986C", + "C9004T", + "A9013T", + "C9016T", + "T9034C", + "G9040A", + "C9133A", + "T9153A", + "C9187T", + "C9217T", + "C9226T", + "G9233T", + "A9253T", + "G9302T", + "G9343A", + "G9367A", + "C9371T", + "C9427T", + "T9436C", + "T9445C", + "G9448A", + "C9493T", + "T9499C", + "A9500C", + "G9586A", + "G9616A", + "G9619A", + "C9634G", + "T9637C", + "T9682C", + "T9784C", + "C9797T", + "A9802C", + "T9805C", + "G9828A", + "C9838T", + "T9871C", + "C9892T", + "C9925T", + "C9958T", + "C10087T", + "C10102T", + "C10129T", + "C10195T", + "A10228G", + "A10333G", + "T10348C", + "C10397T", + "G10399A", + "C10402T", + "G10411T", + "C10429A", + "C10465T", + "T10486C", + "T10540C", + "T10558C", + "C10567T", + "A10570G", + "G10573A", + "T10588C", + "A10612G", + "C10630T", + "G10774T", + "T10786C", + "C10795T", + "T10816C", + "C10948T", + "C10984T", + "G11044A", + "C11095T", + "G11098A", + "G11176A", + "A11288G" + ], + "CP": [ + "A21T", + "T70N", + "K110R", + "I136V" + ], + "E1": [ + "I430V" + ], + "E2": [ + "L197Q", + "A224S", + "A247S", + "N313H", + "R422K" + ], + "E3": [ + "S17T" + ], + "nsP2": [ + "N642S", + "A657S", + "G788R" + ], + "nsP3": [ + "I65L", + "P335S", + "D337N", + "P355S", + "T357S", + "A361T", + "A366S", + "M455L", + "A476V", + "V527A" + ], + "nsP4": [ + "Y597C" + ] + }, + "labels": { + "aa": "CP: A21T, T70N, K110R, I136V; E1: I430V; E2: L197Q, A224S, A247S, N313H, R422K; E3: S17T; nsP2: N642S, A657S, G788R; nsP3: I65L, P335S, D337N, P355S, T357S, A361T, A366S, M455L, A476V, V527A; nsP4: Y597C" + } + }, + "children": [ + { + "name": "NODE_0000101", + "node_attrs": { + "div": 0.8784006814141688, + "num_date": { + "value": 1963.4508907867296, + "confidence": [ + 1963.1725520483167, + 1963.9914415580938 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9389881035788444, + "Honduras": 0.0014877771358825773, + "Mexico": 0.05815749964603252 + }, + "entropy": 0.24636455687219358 + }, + "year": { + "value": "1967", + "confidence": { + "1963": 0.1948575693816142, + "1964": 0.015621103397828125, + "1967": 0.23683469467305973, + "1968": 0.1007955412388471 + }, + "entropy": 3.0104177043102007 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999652929306 + }, + "entropy": 6.308448818817154e-07 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G143A", + "C671T", + "C815T", + "C1304T", + "C2046T", + "A2168G", + "C2204T", + "G2330A", + "C2726T", + "C2849A", + "T3194C", + "A3782G", + "A3893G", + "T4145C", + "G5254A", + "G5381A", + "T5399C", + "C5474T", + "C5603T", + "T5963C", + "C6410T", + "C6467T", + "C6605T", + "T6665C", + "C7091T", + "C7193T", + "C8026T", + "C8803T", + "G9208A", + "G9853A", + "C10180T", + "C10576T" + ], + "nsP3": [ + "S408N" + ] + }, + "labels": { + "aa": "nsP3: S408N" + } + }, + "children": [ + { + "name": "NODE_0000102", + "node_attrs": { + "div": 0.8873146214141688, + "num_date": { + "value": 1966.6344140356728, + "confidence": [ + 1966.4749183716547, + 1966.863576986301 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9916840810728672, + "Honduras": 0.007197089145745793 + }, + "entropy": 0.05246431726513306 + }, + "year": { + "value": "1967", + "confidence": { + "1963": 0.004874448947690024, + "1967": 0.7811804077056459, + "1968": 0.16270442512868902, + "1970": 0.01245971646419016 + }, + "entropy": 0.8402860978185566 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999998114646 + }, + "entropy": 3.9758514323730675e-08 + }, + "place_of_collection": { + "value": "Honduras" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T77C", + "T311C", + "T530C", + "C606T", + "C758T", + "G1013A", + "G1040A", + "C1119T", + "T1430G", + "T1691C", + "C1718A", + "A1742G", + "C1829T", + "T2414C", + "T2498C", + "G2522A", + "A2606T", + "T2624C", + "C2948G", + "C3080T", + "C3161T", + "A3164G", + "T3170C", + "C3317T", + "C3359T", + "T3416C", + "G3485A", + "C3506T", + "A3545G", + "T3857G", + "A3956G", + "C4007T", + "A4064T", + "A4127G", + "T4170C", + "G4469A", + "A4538T", + "T4595C", + "T4622C", + "T4646C", + "G4670A", + "T4709C", + "A4742G", + "C4778T", + "T4833C", + "C5006T", + "G5231A", + "G5321A", + "C5342T", + "C5393T", + "G5447A", + "A5750T", + "T6144C", + "T6204C", + "C6212T", + "C6236T", + "T6329C", + "G6353A", + "T6827C", + "A6908G", + "T6971C", + "A7067T", + "C7100T", + "A7143C", + "C7184T", + "C7478T", + "T7660C", + "A7849G", + "A7855C", + "G7869T", + "G8104A", + "C8116T", + "C8149T", + "A8498G", + "T8512A", + "C8782T", + "C9151T", + "T9187C", + "G9238A", + "T9253C", + "C9391T", + "T9409A", + "T9424C", + "C9631T", + "C9868T", + "A9901G", + "A10210T", + "T10375C", + "T10471C", + "G10516T", + "C10519T", + "T10555C", + "T10561C", + "G10621A", + "C10672G", + "T10906C", + "T11323C", + "C11364T" + ], + "CP": [ + "G103V" + ], + "E3": [ + "I38V" + ], + "nsP1": [ + "I462M" + ], + "nsP3": [ + "E169D" + ] + }, + "labels": { + "aa": "CP: G103V; E3: I38V; nsP1: I462M; nsP3: E169D" + } + }, + "children": [ + { + "name": "NODE_0000103", + "node_attrs": { + "div": 0.8897474914141689, + "num_date": { + "value": 1967.9979666330114, + "confidence": [ + 1967.8215144220555, + 1968.241648933018 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9844769248800294, + "Honduras": 0.0023584343188135927, + "Nicaragua": 0.012650449531010459 + }, + "entropy": 0.08984687218558407 + }, + "year": { + "value": "1968", + "confidence": { + "1967": 0.2532798251711255, + "1968": 0.551680344947555, + "1970": 0.09986717668394812, + "1971": 0.004605146411912532 + }, + "entropy": 1.486987077335078 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999956679156 + }, + "entropy": 8.775397591402187e-08 + }, + "place_of_collection": { + "value": "Nicaragua" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C149T", + "T500C", + "T887C", + "T1572C", + "C1667T", + "T2024C", + "A2849G", + "T3425C", + "T3674C", + "C4229T", + "C4250T", + "T4724A", + "T4955C", + "A5087G", + "C5235T", + "T6254C", + "T6605C", + "T7229C", + "C7230T", + "A7232G", + "G7720T", + "T8005C", + "C8581T", + "T8770C", + "A8902G", + "T9199C", + "C9886T", + "T9946C" + ], + "nsP3": [ + "R402C" + ] + }, + "labels": { + "aa": "nsP3: R402C" + } + }, + "children": [ + { + "name": "KC344458.1", + "node_attrs": { + "div": 0.8951629614141688, + "num_date": { + "value": 1970.0013698630137, + "confidence": [ + 1970.0013698630137, + 1970.0990016107457 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1970", + "confidence": { + "1970": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Izabal_Department" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26C", + "A359G", + "G476A", + "C822T", + "G827A", + "C1175T", + "A1334G", + "T1594C", + "A1745G", + "G1763A", + "G1940A", + "G2093A", + "C2120T", + "T2402C", + "T2405C", + "C2435T", + "T3101C", + "A3113C", + "C3195T", + "A3365G", + "C3929T", + "A4085T", + "C4328T", + "C4349T", + "G4551A", + "C4583T", + "C4697T", + "C5136T", + "G5165T", + "T5395A", + "A5591G", + "T5879C", + "T5894C", + "C5963T", + "C6296T", + "A6725C", + "C6779T", + "T6923C", + "C6971T", + "T7284C", + "C7305T", + "A7322G", + "G7738A", + "C7813T", + "A7876G", + "T7969C", + "C8038T", + "G8668A", + "C9187T", + "A9190G", + "T9388C", + "C9481T", + "T9493C", + "A10105G", + "T10207A", + "C10540T", + "C10699T", + "C10849T", + "A10876G", + "C10912T" + ], + "nsP1": [ + "V517A" + ], + "nsP3": [ + "A174T", + "H369Y", + "E378D", + "L455Q" + ] + }, + "labels": { + "aa": "nsP1: V517A; nsP3: A174T, H369Y, E378D, L455Q" + } + } + }, + { + "name": "NODE_0000104", + "node_attrs": { + "div": 0.8931299814141689, + "num_date": { + "value": 1968.8513304931412, + "confidence": [ + 1968.7750500075936, + 1968.9160716149206 + ] + }, + "country": { + "value": "Nicaragua", + "confidence": { + "Costa_Rica": 0.001316127239672711, + "Guatemala": 0.16944707668515263, + "Nicaragua": 0.8247480975131405 + }, + "entropy": 0.5039787639930786 + }, + "year": { + "value": "1968", + "confidence": { + "1967": 0.04642312915188171, + "1968": 0.9004524752822846, + "1970": 0.017216755454042842, + "1971": 0.0017477599342316456 + }, + "entropy": 0.5612378987822298 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999856926204 + }, + "entropy": 2.727322840230718e-07 + }, + "place_of_collection": { + "value": "Nicaragua" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G402A", + "T968C", + "T1056C", + "T1274C", + "G1517A", + "G1724A", + "G1766A", + "A2183G", + "C2450T", + "T3231C", + "G3252A", + "T3383C", + "C4088T", + "T4649C", + "T4664C", + "A5097C", + "A5099C", + "C5128T", + "C5197T", + "G5351A", + "T5469C", + "T5972C", + "C6204T", + "C6368T", + "A6389G", + "A6573C", + "A6575G", + "T6641C", + "A6815T", + "C7124T", + "T7389C", + "C7657T", + "C7936T", + "T8594C", + "T8629C", + "C8731T", + "A8824G", + "T8956C", + "T9070C", + "C9253T", + "T9562C", + "C9637T", + "C9747T", + "C10693T" + ], + "E2": [ + "S395F" + ], + "nsP1": [ + "A120T" + ], + "nsP2": [ + "A535T" + ], + "nsP3": [ + "T356P", + "S366F", + "A389V" + ], + "nsP4": [ + "S563P" + ] + }, + "labels": { + "aa": "E2: S395F; nsP1: A120T; nsP2: A535T; nsP3: T356P, S366F, A389V; nsP4: S563P" + } + }, + "children": [ + { + "name": "MK796243.1", + "node_attrs": { + "div": 0.9084249514141689, + "num_date": { + "value": 2015.8068493150686, + "confidence": [ + 2015.8068493150686, + 2015.8068493150686 + ] + }, + "author": { + "author": "Leon,B., Jimenez,C., Gonzalez-Barrientos,R. and Ramirez,L.", + "value": "Leon,B., Jimenez,C., Gonzalez-Barrientos,R. and Ramirez,L." + }, + "country": { + "value": "Costa_Rica", + "confidence": { + "Costa_Rica": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "equine" + }, + "year": { + "value": "2015", + "confidence": { + "2015": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Costa_Rica" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C228T", + "C281T", + "A402T", + "G476A", + "G521A", + "T554C", + "T678C", + "G730A", + "G734A", + "T741C", + "T758C", + "C809T", + "C905T", + "C953T", + "C1056T", + "G1109A", + "T1229A", + "A1235G", + "C1340T", + "C1367T", + "C1475T", + "C1553A", + "C1567A", + "G1616T", + "A1646T", + "T1694C", + "C1712T", + "A1718G", + "C1721T", + "T1781C", + "C1796T", + "G1874T", + "T1928C", + "C1970T", + "C2054T", + "A2111G", + "G2168T", + "C2219G", + "C2243T", + "T2291C", + "C2375T", + "A2477G", + "T2723C", + "T2840C", + "G2849A", + "C2949T", + "T3011G", + "G3050A", + "A3132G", + "T3155C", + "C3170T", + "C3176T", + "G3188A", + "C3194T", + "C3272T", + "C3366T", + "C3425T", + "C3498T", + "C3647T", + "C3719T", + "C3869T", + "C3929T", + "C4224A", + "T4601C", + "G4631A", + "A4781G", + "A4799G", + "G4862T", + "T4961C", + "G4964A", + "T4982C", + "A5093G", + "C5110T", + "A5168C", + "T5197C", + "T5288C", + "A5447G", + "T5456C", + "C5469T", + "A5592T", + "C5642T", + "C5714T", + "T5723C", + "G5795A", + "T5894C", + "C5972T", + "T5978C", + "T6014C", + "T6015G", + "C6065A", + "C6144T", + "T6191C", + "C6260T", + "A6266C", + "C6282T", + "G6407C", + "T6434C", + "T6467C", + "G6488T", + "T6497C", + "A6593T", + "C6635T", + "C6641T", + "T6677C", + "T6714C", + "C6758T", + "T6815C", + "G6857A", + "G6887A", + "A6893T", + "T7049C", + "C7172T", + "C7208T", + "C7214T", + "C7238T", + "C7389T", + "A7427G", + "C7603T", + "C7612T", + "G7621A", + "T7642C", + "T7657C", + "T7768C", + "C7855A", + "T7869G", + "T7925C", + "T7978C", + "C7990T", + "T7993C", + "T8045C", + "C8161T", + "C8422T", + "C8455T", + "T8695C", + "A8805G", + "G8806T", + "C8986T", + "C9025T", + "C9109A", + "C9187T", + "T9217C", + "A9352G", + "T9391A", + "C9408T", + "C9562T", + "T9592A", + "A9598G", + "C9640T", + "C9740A", + "T9747C", + "T9797C", + "C9826A", + "T9856C", + "C10084T", + "T10150C", + "T10195C", + "C10366T", + "C10375T", + "C10561T", + "A10621G", + "A10622G", + "T10631A", + "C10633A", + "C11077T", + "G11089T", + "G11113T", + "T11140C", + "A11165G", + "C11423T", + "G11431T", + "A11437T", + "A11438T", + "A11440T", + "C11444T" + ], + "CP": [ + "V103G" + ], + "E1": [ + "I208V", + "S211T", + "T389A" + ], + "E2": [ + "Q81R", + "S182R", + "S282L", + "F395S" + ], + "nsP1": [ + "T120S", + "R229K", + "A508E" + ], + "nsP2": [ + "Q75H", + "D454E", + "T495A", + "H617Y" + ], + "nsP3": [ + "L65I", + "A360V", + "E379D", + "V389A", + "S521C" + ], + "nsP4": [ + "L105V", + "E235D", + "P563S" + ] + }, + "labels": { + "aa": "CP: V103G; E1: I208V, S211T, T389A; E2: Q81R, S182R, S282L, F395S; nsP1: T120S, R229K, A508E; nsP2: Q75H, D454E, T495A, H617Y; nsP3: L65I, A360V, E379D, V389A, S521C; nsP4: L105V, E235D, P563S" + } + } + }, + { + "name": "KC344441.1", + "node_attrs": { + "div": 0.8942507314141689, + "num_date": { + "value": 1968.9986338797814, + "confidence": [ + 1968.946027293132, + 1968.9986338797814 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Nicaragua", + "confidence": { + "Nicaragua": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1968", + "confidence": { + "1968": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Nicaragua" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1877A", + "G8185A", + "G11167A" + ] + } + } + } + ] + } + ] + }, + { + "name": "NODE_0000105", + "node_attrs": { + "div": 0.8885950814141689, + "num_date": { + "value": 1966.8699261577528, + "confidence": [ + 1966.718899739952, + 1967.0490837898167 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.982883210869406, + "Honduras": 0.01682092501189865 + }, + "entropy": 0.08839686767162451 + }, + "year": { + "value": "1967", + "confidence": { + "1967": 0.8851860986957361, + "1968": 0.10583748350021174, + "1970": 0.0029958198479441487 + }, + "entropy": 0.41537202323544903 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999995972199 + }, + "entropy": 9.113974830422336e-09 + }, + "place_of_collection": { + "value": "Honduras" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A743G", + "T1949C", + "C2171T", + "T2799C", + "T3614C", + "C4784T", + "C5250T", + "G6674A", + "A8341G", + "A9307C", + "T10129C" + ], + "nsP3": [ + "L407F" + ] + }, + "labels": { + "aa": "nsP3: L407F" + } + }, + "children": [ + { + "name": "KC344444.1", + "node_attrs": { + "div": 0.8949681714141688, + "num_date": { + "value": 1967.9986301369863, + "confidence": [ + 1967.8358276037727, + 1967.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Honduras", + "confidence": { + "Honduras": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1967", + "confidence": { + "1967": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Honduras" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26C", + "T1097C", + "C1106T", + "T1190C", + "G1766A", + "A1853G", + "T1979C", + "A2144G", + "T2154C", + "G2201A", + "C2213T", + "G2285A", + "T2291C", + "C2328T", + "T2533A", + "A2696G", + "A2985T", + "C3194A", + "C3195T", + "A3233G", + "A3395G", + "T3623C", + "T3756C", + "G3767A", + "A4085T", + "A4406G", + "A4418G", + "A4469G", + "C4502T", + "A4550G", + "T4667C", + "G4742A", + "A4814G", + "A4943T", + "C5018T", + "A5030G", + "A5273G", + "C5354T", + "G5384A", + "T5458C", + "C5690T", + "T6050C", + "T6590C", + "C6897T", + "T6900C", + "T7493C", + "T7565C", + "A7584T", + "C8032T", + "T8074C", + "A8119T", + "G8395A", + "C8408T", + "T8506C", + "C8537T", + "G8587A", + "A8596G", + "C8647T", + "T8689C", + "T8830A", + "C8932T", + "T9094C", + "A9595C", + "G9956A", + "G10333A", + "G10513A", + "C10540T", + "C10771T" + ], + "6k": [ + "V42I" + ], + "CP": [ + "F2L", + "Y8F" + ], + "nsP2": [ + "F295Y", + "M446L" + ], + "nsP3": [ + "V476A" + ] + }, + "labels": { + "aa": "6k: V42I; CP: F2L, Y8F; nsP2: F295Y, M446L; nsP3: V476A" + } + } + }, + { + "name": "NODE_0000106", + "node_attrs": { + "div": 0.8926273414141689, + "num_date": { + "value": 1967.674004521761, + "confidence": [ + 1967.593250158073, + 1967.75376709406 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.984406664152206, + "Honduras": 0.01558791466942834 + }, + "entropy": 0.08041023733291297 + }, + "year": { + "value": "1967", + "confidence": { + "1967": 0.8881280205048107, + "1968": 0.10719361920753294, + "1970": 0.002311499219890104 + }, + "entropy": 0.38180443144167375 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999997441795 + }, + "entropy": 5.90401437470456e-09 + }, + "place_of_collection": { + "value": "Honduras" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C542T", + "C590T", + "C953T", + "A1013G", + "T1194C", + "G1613A", + "G1649A", + "T2228C", + "A2330G", + "C2333T", + "A2546C", + "C2759T", + "T2786C", + "C2789T", + "A3132T", + "T3394C", + "C3416T", + "G3878A", + "C4205T", + "C4214T", + "C4787T", + "C4841T", + "T5081C", + "C5098T", + "T5251C", + "T6590A", + "T6714C", + "T6770C", + "G7001A", + "G7145A", + "T7193C", + "T7241C", + "T7259C", + "C7585T", + "T7661C", + "C8038T", + "A8104G", + "T8128C", + "T8494C", + "C9163T", + "C9250T", + "A9382G", + "G9463A", + "T10150C", + "C11323T" + ], + "nsP2": [ + "T495S", + "V582A" + ], + "nsP3": [ + "T356I", + "F407S" + ] + }, + "labels": { + "aa": "nsP2: T495S, V582A; nsP3: T356I, F407S" + } + }, + "children": [ + { + "name": "NODE_0000107", + "node_attrs": { + "div": 0.8933561114141689, + "num_date": { + "value": 1968.530850614398, + "confidence": [ + 1968.289474084597, + 1968.8066542550662 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.999531638622514 + }, + "entropy": 0.004127118955511345 + }, + "year": { + "value": "1968", + "confidence": { + "1963": 0.002374312792788737, + "1967": 0.2897491001029152, + "1968": 0.6554618455335391, + "1970": 0.00345252649759819 + }, + "entropy": 1.0006573111739723 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999923836038 + }, + "entropy": 1.4998740647895978e-07 + }, + "place_of_collection": { + "value": "Puerto_Barrios" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C905T", + "A3086G", + "C3737T", + "C6870T", + "G7436A", + "G7732A", + "C8932T", + "C9031T", + "C10771T", + "A11330G" + ] + } + }, + "children": [ + { + "name": "KC344442.1", + "node_attrs": { + "div": 0.8950458514141689, + "num_date": { + "value": 1968.9986338797814, + "confidence": [ + 1968.6727045677603, + 1968.9986338797814 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1968", + "confidence": { + "1968": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Puerto_Barrios" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G1184A", + "C1991T", + "C2717T", + "C3225T", + "C3230T", + "A3968T", + "T3977C", + "C3986T", + "A5212T", + "T6121C", + "C7855A", + "T7867C", + "T8962A", + "C9148T", + "C9451T", + "A9463C", + "T9592G", + "C10792T" + ], + "nsP3": [ + "H394L" + ], + "nsP4": [ + "I140T" + ] + }, + "labels": { + "aa": "nsP3: H394L; nsP4: I140T" + } + } + }, + { + "name": "KC344455.1", + "node_attrs": { + "div": 0.8968267914141689, + "num_date": { + "value": 1979.0013698630137, + "confidence": [ + 1979.0013698630137, + 1979.4843052385363 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1979", + "confidence": { + "1979": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Izabal_Department" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C23G", + "C278T", + "G293T", + "C428T", + "G497A", + "C1022T", + "G1430T", + "G1742A", + "C1796T", + "A1919T", + "C2558T", + "C2949T", + "T3125C", + "G3953A", + "C4616T", + "T5000C", + "G5181A", + "T5405C", + "T5689A", + "C5693T", + "A6230T", + "C6320T", + "C6527T", + "G6617A", + "G6692A", + "C7040T", + "A7250G", + "A7744T", + "C7996T", + "C8644T", + "A8698G", + "C8857T", + "T9172C", + "G9220A", + "C10552T", + "C10561T", + "C10746T", + "T10804C" + ], + "E1": [ + "P249L" + ], + "nsP1": [ + "M462I" + ], + "nsP3": [ + "V384M", + "F553Y" + ] + }, + "labels": { + "aa": "E1: P249L; nsP1: M462I; nsP3: V384M, F553Y" + } + } + } + ] + }, + { + "name": "NODE_0000108", + "node_attrs": { + "div": 0.8929068414141689, + "num_date": { + "value": 1967.7288269161515, + "confidence": [ + 1967.6364320077896, + 1967.7793373923694 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9747280136284354, + "Honduras": 0.025227847317594206 + }, + "entropy": 0.11833317120205054 + }, + "year": { + "value": "1967", + "confidence": { + "1967": 0.9307654692220723, + "1968": 0.06282061677872494, + "1970": 0.003360642055826913 + }, + "entropy": 0.2888157406947806 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999997175613 + }, + "entropy": 6.490578933759888e-09 + }, + "place_of_collection": { + "value": "Honduras" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T2103C", + "T3536A", + "T4562C" + ] + } + }, + "children": [ + { + "name": "KC344443.1", + "node_attrs": { + "div": 0.8945522214141689, + "num_date": { + "value": 1970.5821917808219, + "confidence": [ + 1970.5821917808219, + 1970.6561643835616 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1970", + "confidence": { + "1970": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Puerto_Barrios" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T857C", + "C1051A", + "C1415T", + "A3163G", + "T3317C", + "T3656A", + "C3737T", + "C4250T", + "T4340C", + "C5867T", + "A6332G", + "C6764T", + "T7262C", + "A8713G", + "C8758T", + "C9424T", + "G11035A", + "T11068C", + "T11137C" + ], + "nsP1": [ + "A336D" + ], + "nsP2": [ + "K505R", + "N669K" + ] + }, + "labels": { + "aa": "nsP1: A336D; nsP2: K505R, N669K" + } + } + }, + { + "name": "KC344456.1", + "node_attrs": { + "div": 0.8967203614141689, + "num_date": { + "value": 1967.9986301369863, + "confidence": [ + 1967.9629630787217, + 1967.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Honduras", + "confidence": { + "Honduras": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1967", + "confidence": { + "1967": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Honduras" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A52G", + "C1175T", + "C1475T", + "A1793G", + "C2132T", + "C2537T", + "T2972C", + "C3158T", + "T3461C", + "G3758A", + "G3974A", + "T4541C", + "C4886A", + "G4949A", + "A5097C", + "G5139T", + "A5296T", + "C5444A", + "C5672T", + "C5690T", + "A6055G", + "A6353G", + "G6716A", + "C7305T", + "C7855A", + "C8092T", + "C8122T", + "C8124T", + "C8318T", + "C8362T", + "A8542T", + "T8689C", + "T8830A", + "C9290T", + "T9505C", + "T9668G", + "G9688A", + "C10076T", + "C10596T", + "A10735G", + "T11122C" + ], + "CP": [ + "T188I" + ], + "E1": [ + "P26S", + "A199V" + ], + "E2": [ + "L369V" + ], + "E3": [ + "K52N" + ], + "nsP1": [ + "K3R" + ], + "nsP3": [ + "I356L", + "G370*", + "E422V" + ], + "nsP4": [ + "K118R" + ] + }, + "labels": { + "aa": "CP: T188I; E1: P26S, A199V; E2: L369V; E3: K52N; nsP1: K3R; nsP3: I356L, G370*, E422V; nsP4: K118R" + } + } + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000109", + "node_attrs": { + "div": 0.8934085614141688, + "num_date": { + "value": 1968.1934241718325, + "confidence": [ + 1968.0396444945595, + 1968.3624671945972 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9998875608507717 + }, + "entropy": 0.0011960390359238451 + }, + "year": { + "value": "1968", + "confidence": { + "1967": 0.0222910196420714, + "1968": 0.743903604323705, + "1970": 0.009095943559228435, + "1971": 0.04278936629706298 + }, + "entropy": 1.474398660473928 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999827117187 + }, + "entropy": 3.2628382761365747e-07 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C80T", + "C149T", + "A188G", + "A275G", + "C281T", + "T554C", + "C590T", + "C593T", + "C809A", + "A1008G", + "T1154C", + "A1235G", + "G1412A", + "G1417A", + "G1511A", + "G1649A", + "C1712T", + "C1718T", + "C1796T", + "G1814A", + "G1868A", + "T1928C", + "G2069A", + "C2237T", + "T2291C", + "A2348G", + "T2426C", + "C2462A", + "T2507C", + "T2520C", + "C2558T", + "T2579C", + "G2834A", + "T2840C", + "C2978T", + "C3191T", + "T3329A", + "G3371A", + "T3394C", + "C3503T", + "C3626T", + "C3641T", + "C3689T", + "A3701G", + "T3761C", + "A3770C", + "T3785C", + "T3797C", + "C3836T", + "T3848A", + "T3977C", + "T3987C", + "C3998T", + "C4091T", + "C4229T", + "C4250T", + "A4312G", + "A4511G", + "A4586T", + "C4613T", + "T4625C", + "A4710G", + "T4883C", + "T5000C", + "G5039A", + "C5147T", + "G5196A", + "C5234T", + "C5255T", + "G5382A", + "T5425A", + "T5426A", + "T5441C", + "T5458C", + "G5471A", + "C5585T", + "G5624A", + "A5702G", + "G5765A", + "T5810C", + "G5840A", + "C5900A", + "T5978C", + "T6011A", + "C6065T", + "C6074T", + "T6077C", + "A6218G", + "G6287A", + "A6341G", + "A6476G", + "C6821A", + "T6932A", + "C7016T", + "C7040T", + "T7050C", + "G7055T", + "C7103T", + "C7158T", + "G7175A", + "T7211C", + "C7230T", + "T7259C", + "G7265A", + "G7268A", + "A7340T", + "T7373C", + "T7395C", + "G7496A", + "A7559G", + "T7768C", + "G7846A", + "A7866C", + "C7870T", + "T7957A", + "G7975A", + "C8032T", + "C8038T", + "C8092T", + "C8098T", + "C8158T", + "C8374T", + "T8413A", + "C8461T", + "C8581T", + "T8929C", + "T8964C", + "T9202A", + "T9226A", + "C9326T", + "T9349C", + "C9376T", + "A9406C", + "C9583T", + "C9637T", + "T9667C", + "T9668C", + "A9670C", + "T9727G", + "C9748A", + "A9775G", + "T9791C", + "C10159T", + "T10216C", + "C10405T", + "A10525G", + "C10552T", + "A10622G", + "G10714T", + "T10717G", + "C10738T", + "T10750C", + "T10768G", + "C10816T", + "A10831G", + "A10900G", + "A11104G", + "T11119C" + ], + "CP": [ + "N102T" + ], + "E1": [ + "I208V" + ], + "E2": [ + "V134A" + ], + "nsP1": [ + "N322D", + "S458N" + ], + "nsP2": [ + "H560Q", + "V582A" + ], + "nsP3": [ + "K94R", + "T227A", + "A389T", + "G451R", + "I465K", + "V476A" + ] + }, + "labels": { + "aa": "CP: N102T; E1: I208V; E2: V134A; nsP1: N322D, S458N; nsP2: H560Q, V582A; nsP3: K94R, T227A, A389T, G451R, I465K, V476A" + } + }, + "children": [ + { + "name": "NODE_0000110", + "node_attrs": { + "div": 0.8974542814141688, + "num_date": { + "value": 1968.710129933895, + "confidence": [ + 1968.6243023273967, + 1968.799022515658 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999999260755221 + }, + "entropy": 1.3528845743611496e-06 + }, + "year": { + "value": "1968", + "confidence": { + "1968": 0.9972113635157401 + }, + "entropy": 0.025800159497792005 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999998653451949 + }, + "entropy": 2.264966051224431e-06 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T533C", + "T728C", + "T1772C", + "G1874A", + "T2091A", + "C3326T", + "C3350T", + "C3366T", + "T3642C", + "G3884A", + "C4061T", + "C4334T", + "C4349T", + "T4637A", + "A4796G", + "A5083G", + "C5189T", + "C5333T", + "T6351C", + "G6659A", + "T6662A", + "C6839T", + "C7289T", + "C7505T", + "C7506T", + "C7918T", + "T8401C", + "T8686C", + "A9355G", + "C9430T", + "A9712G", + "C10084T", + "T10492C", + "C10852T", + "A10999C", + "T11158C", + "T11287A", + "A11330T" + ], + "nsP2": [ + "S148T" + ], + "nsP3": [ + "E351G" + ], + "nsP4": [ + "P602S" + ] + }, + "labels": { + "aa": "nsP2: S148T; nsP3: E351G; nsP4: P602S" + } + }, + "children": [ + { + "name": "NODE_0000111", + "node_attrs": { + "div": 0.8989418914141688, + "num_date": { + "value": 1968.8792655970951, + "confidence": [ + 1968.8140578643659, + 1968.9348264986697 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999999951033433 + }, + "entropy": 1.0910887398881119e-07 + }, + "year": { + "value": "1968", + "confidence": { + "1968": 0.9999834486251216 + }, + "entropy": 0.0002348784081070567 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9998814735364694 + }, + "entropy": 0.0011900430319285598 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C599T", + "G1049A", + "C1721T", + "C3008T", + "T3350A", + "T3914C", + "T4325C", + "C5657T", + "C5792T", + "T5862C", + "C7439T", + "C9286T", + "A9508G", + "G9649A", + "C9782A", + "C10015T", + "C11423T" + ], + "E2": [ + "R407S" + ] + }, + "labels": { + "aa": "E2: R407S" + } + }, + "children": [ + { + "name": "MK028849.1", + "node_attrs": { + "div": 0.8998523214141688, + "num_date": { + "value": 1968.9986338797814, + "confidence": [ + 1968.9524513960253, + 1968.9986338797814 + ] + }, + "author": { + "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", + "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1968", + "confidence": { + "1968": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9997631373254122 + }, + "entropy": 0.002214171335747622 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A1T", + "G4A", + "A594G", + "G11247A", + "G11252A", + "C11253A", + "T11254C", + "T11256C", + "G11291A", + "T11292C" + ], + "E1": [ + "G416E", + "A418N", + "I419T", + "V431T" + ], + "nsP1": [ + "M184V" + ] + }, + "labels": { + "aa": "E1: G416E, A418N, I419T, V431T; nsP1: M184V" + } + } + }, + { + "name": "U34999.1", + "node_attrs": { + "div": 0.8993152314141688, + "num_date": { + "value": 1968.9658320933345, + "confidence": [ + 1968.8963763386555, + 1968.9986338797814 + ] + }, + "author": { + "author": "Oberste,M.S., Parker,M.D. and Smith,J.F.", + "value": "Oberste,M.S., Parker,M.D. and Smith,J.F." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1968", + "confidence": { + "1968": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9997631373254122 + }, + "entropy": 0.002214171335747622 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A1240C", + "G2169C", + "G5661T", + "A6157G" + ], + "nsP1": [ + "K399T" + ], + "nsP2": [ + "A174P" + ], + "nsP3": [ + "A544S" + ], + "nsP4": [ + "D152G" + ] + }, + "labels": { + "aa": "nsP1: K399T; nsP2: A174P; nsP3: A544S; nsP4: D152G" + } + } + } + ] + }, + { + "name": "NODE_0000112", + "node_attrs": { + "div": 0.8982698014141688, + "num_date": { + "value": 1968.9500440004672, + "confidence": [ + 1968.9028057290607, + 1968.9853841968966 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999999523229873 + }, + "entropy": 9.545350859578166e-07 + }, + "year": { + "value": "1968", + "confidence": { + "1968": 0.9958132911227356, + "1970": 0.0015638087673237992, + "1971": 0.0011815744641964735 + }, + "entropy": 0.03621027905914277 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999995519684 + }, + "entropy": 1.0090432863481326e-08 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T770C", + "T3579G", + "C5393T", + "C5690T", + "A5841C", + "T7340C", + "G8632A", + "A10639G" + ], + "nsP2": [ + "S644A" + ], + "nsP4": [ + "I47L" + ] + }, + "labels": { + "aa": "nsP2: S644A; nsP4: I47L" + } + }, + "children": [ + { + "name": "NODE_0000113", + "node_attrs": { + "div": 0.8988483714141687, + "num_date": { + "value": 1970.5190561784627, + "confidence": [ + 1970.422720100206, + 1970.5919523796167 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999999060520706 + }, + "entropy": 1.8188818947123878e-06 + }, + "year": { + "value": "1970", + "confidence": { + "1967": 0.0028124919837905745, + "1968": 0.06592797759229768, + "1970": 0.6553396458581918, + "1971": 0.24484923264669148 + }, + "entropy": 1.0412932097726149 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999997238292 + }, + "entropy": 6.352693037796192e-09 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26C", + "G3380T", + "T4622C", + "T4700C", + "G5780A", + "C6320T", + "T11194C" + ] + } + }, + "children": [ + { + "name": "KC344436.1", + "node_attrs": { + "div": 0.8992070314141687, + "num_date": { + "value": 1970.5821917808219, + "confidence": [ + 1970.5821917808219, + 1970.6513601803258 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1970", + "confidence": { + "1970": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1151C", + "A1518C", + "T3623C", + "C9805T" + ], + "nsP1": [ + "N492H" + ] + }, + "labels": { + "aa": "nsP1: N492H" + } + } + }, + { + "name": "KC344454.1", + "node_attrs": { + "div": 0.8995666414141688, + "num_date": { + "value": 1971.0013698630137, + "confidence": [ + 1971.0013698630137, + 1971.0755378429167 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1971", + "confidence": { + "1971": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Santa_Rosa_Department" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C653T", + "A1374G", + "T3800C", + "C5781T", + "G6237A", + "C6911T", + "G8560A", + "A10429G" + ], + "nsP1": [ + "N444D" + ], + "nsP4": [ + "E179K" + ] + }, + "labels": { + "aa": "nsP1: N444D; nsP4: E179K" + } + } + } + ] + }, + { + "name": "NODE_0000114", + "node_attrs": { + "div": 0.8984488214141688, + "num_date": { + "value": 1968.9829329080214, + "confidence": [ + 1968.9526699608805, + 1968.9978328097936 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999999239474069 + }, + "entropy": 1.48889832915855e-06 + }, + "year": { + "value": "1968", + "confidence": { + "1968": 0.9972499652757165 + }, + "entropy": 0.026044064760557675 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999997806925 + }, + "entropy": 5.094829359794432e-09 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C5960T", + "C11077T" + ] + } + }, + "children": [ + { + "name": "KC344435.1", + "node_attrs": { + "div": 0.8985397214141688, + "num_date": { + "value": 1968.9986338797814, + "confidence": [ + 1968.9736153875065, + 1968.9986338797814 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1968", + "confidence": { + "1968": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A7677G" + ], + "CP": [ + "Q39R" + ] + }, + "labels": { + "aa": "CP: Q39R" + } + } + }, + { + "name": "NODE_0000115", + "node_attrs": { + "div": 0.8993479014141689, + "num_date": { + "value": 1971.9578936590226, + "confidence": [ + 1971.82651189948, + 1972.2655132105199 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999996003799279 + }, + "entropy": 7.164312361013106e-06 + }, + "year": { + "value": "1972", + "confidence": { + "1968": 0.012423931804353664, + "1970": 0.0019589292347111545, + "1972": 0.8190953461847393, + "1973": 0.1280741617139574 + }, + "entropy": 0.762271991381328 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999988685865 + }, + "entropy": 2.4436303426686814e-08 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C378T", + "C1313T", + "C1802T", + "T2405C", + "C4749T", + "T7783C", + "T7798C", + "C8446T", + "C10027T", + "T10141C" + ] + } + }, + "children": [ + { + "name": "KC344467.1", + "node_attrs": { + "div": 0.8997971514141688, + "num_date": { + "value": 1972.0013661202186, + "confidence": [ + 1972.0013661202186, + 1972.3142332951438 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1972", + "confidence": { + "1972": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A2189G", + "T2723C", + "A6389T", + "T7019C", + "G8296T" + ], + "nsP4": [ + "K229N" + ] + }, + "labels": { + "aa": "nsP4: K229N" + } + } + }, + { + "name": "KC344434.1", + "node_attrs": { + "div": 0.9002488114141689, + "num_date": { + "value": 1973.0013698630137, + "confidence": [ + 1973.0013698630137, + 1973.0989174042338 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1973", + "confidence": { + "1973": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Guatemala" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A1601G", + "G2703A", + "G4187A", + "T4694C", + "T4727C", + "A5336G", + "C6025T", + "C8149G", + "C9184T", + "A10429G" + ], + "nsP2": [ + "D352N" + ], + "nsP4": [ + "A108V" + ] + }, + "labels": { + "aa": "nsP2: D352N; nsP4: A108V" + } + } + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000116", + "node_attrs": { + "div": 0.8938830614141688, + "num_date": { + "value": 1970.8249790357856, + "confidence": [ + 1970.4589098397512, + 1970.9986550465994 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999765587490791 + }, + "entropy": 0.000313975714669919 + }, + "year": { + "value": "1971", + "confidence": { + "1967": 0.016340491389580842, + "1968": 0.11389570560933904, + "1971": 0.47557935887380504, + "1977": 0.01932093138490816 + }, + "entropy": 2.5174723699504136 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999655967675 + }, + "entropy": 6.256247499345998e-07 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1694C", + "T3935C", + "G4469A", + "A6011G", + "C8062A", + "C8731T", + "C9184T", + "C9631T", + "C9640T", + "C9670T", + "T9709C" + ] + } + }, + "children": [ + { + "name": "NODE_0000117", + "node_attrs": { + "div": 0.9006146814141689, + "num_date": { + "value": 1977.5880104774483, + "confidence": [ + 1977.1199153882249, + 1977.8680486724272 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.999999609633525 + }, + "entropy": 7.006107829486972e-06 + }, + "year": { + "value": "1977", + "confidence": { + "1977": 0.9945624689163256, + "1978": 0.004086164089170045 + }, + "entropy": 0.04183770385896575 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999989837317 + }, + "entropy": 2.2058269483927146e-08 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C28T", + "T536C", + "C578T", + "C905T", + "C1022T", + "C1475T", + "G1748A", + "T1823C", + "C1931T", + "C2120T", + "C2129T", + "C2132T", + "T2180C", + "C2840T", + "C3230T", + "C3257T", + "C3394T", + "C4277T", + "A4433C", + "C4496T", + "G4559A", + "C4658T", + "A5215G", + "G5249A", + "T5251C", + "C5282T", + "A5347T", + "C5423A", + "A5591T", + "T6191C", + "G6362T", + "T6410C", + "A6528T", + "C6704T", + "A6821T", + "C7005T", + "C7100T", + "C7148T", + "C7214T", + "T7229C", + "T7493G", + "C7585T", + "C7612T", + "G7774A", + "A7942G", + "T8026C", + "T8032C", + "C8050A", + "T8242C", + "T8323C", + "C8488T", + "C8527T", + "C8590T", + "T8770C", + "T8962G", + "T9016C", + "A9040G", + "T9172C", + "A9247T", + "C9290T", + "T9326C", + "A9472C", + "T9526C", + "A9572C", + "C9868T", + "C9938T", + "A10384T", + "G10831A", + "T10984C", + "A11118T", + "C11119T", + "T11140C", + "C11364T", + "C11423T" + ], + "E1": [ + "Y373F" + ], + "E2": [ + "E303D" + ], + "nsP2": [ + "A582V" + ], + "nsP3": [ + "Q395R", + "L407P", + "E439V" + ], + "nsP4": [ + "M276L", + "C597W" + ] + }, + "labels": { + "aa": "E1: Y373F; E2: E303D; nsP2: A582V; nsP3: Q395R, L407P, E439V; nsP4: M276L, C597W" + } + }, + "children": [ + { + "name": "KC344527.1", + "node_attrs": { + "div": 0.9017154314141689, + "num_date": { + "value": 1977.8749882460327, + "confidence": [ + 1977.0013698630137, + 1977.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1977", + "confidence": { + "1977": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1119T", + "C1199T", + "T3074C", + "A3923T", + "C4334T", + "G4826A", + "T6144C", + "A6243G", + "C6446A", + "G10066A", + "A10399G", + "C10896T" + ], + "E1": [ + "A299V" + ], + "nsP4": [ + "T181A" + ] + }, + "labels": { + "aa": "E1: A299V; nsP4: T181A" + } + } + }, + { + "name": "NODE_0000118", + "node_attrs": { + "div": 0.9007693714141689, + "num_date": { + "value": 1977.8755301590813, + "confidence": [ + 1977.4876188465487, + 1977.9917879051857 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.999999800203385 + }, + "entropy": 3.3272616637071567e-06 + }, + "year": { + "value": "1977", + "confidence": { + "1977": 0.9910306257326063, + "1978": 0.008370016413977423 + }, + "entropy": 0.055386908685682086 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999575067 + }, + "entropy": 1.0553147429635623e-09 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C807T", + "T10555C" + ] + } + }, + "children": [ + { + "name": "KC344437.1", + "node_attrs": { + "div": 0.9010405514141689, + "num_date": { + "value": 1977.9986301369863, + "confidence": [ + 1977.5751445546766, + 1977.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1977", + "confidence": { + "1977": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2756T", + "C7390T", + "C9871T" + ], + "nsP4": [ + "S563F" + ] + }, + "labels": { + "aa": "nsP4: S563F" + } + } + }, + { + "name": "NODE_0000119", + "node_attrs": { + "div": 0.9009485314141689, + "num_date": { + "value": 1977.9044784711318, + "confidence": [ + 1977.657294903519, + 1978.337873769058 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.999888414833597 + }, + "entropy": 0.0011431663491554846 + }, + "year": { + "value": "1978", + "confidence": { + "1977": 0.4721342173157719, + "1978": 0.49058470366463097, + "1980": 0.015895772741022482 + }, + "entropy": 0.9323248229120716 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999583878474 + }, + "entropy": 7.488034261835299e-07 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C6320T", + "A9692C" + ], + "E2": [ + "I377L" + ] + }, + "labels": { + "aa": "E2: I377L" + } + }, + "children": [ + { + "name": "AF448539.1", + "node_attrs": { + "div": 0.9025630614141689, + "num_date": { + "value": 1980.0013661202186, + "confidence": [ + 1980.0013661202186, + 1980.8989071038252 + ] + }, + "author": { + "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", + "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1980", + "confidence": { + "1980": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9987614467370567, + "NAm": 0.0012385532629433237 + }, + "entropy": 0.009528427769028533 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C337T", + "C1367T", + "C1455T", + "A1540C", + "T2135C", + "A2323G", + "A3166G", + "C3479T", + "C3498T", + "T3524C", + "A4471G", + "C4697T", + "C6260T", + "T6821C", + "G7503A", + "C7854T", + "T9235C", + "C9801T" + ], + "CP": [ + "P98L" + ], + "E2": [ + "A413V" + ], + "nsP1": [ + "A98V", + "E499A" + ], + "nsP2": [ + "K225R", + "E506G", + "H617Y" + ], + "nsP3": [ + "K147R" + ], + "nsP4": [ + "A601T" + ] + }, + "labels": { + "aa": "CP: P98L; E2: A413V; nsP1: A98V, E499A; nsP2: K225R, E506G, H617Y; nsP3: K147R; nsP4: A601T" + } + } + }, + { + "name": "KC344438.1", + "node_attrs": { + "div": 0.9016656614141688, + "num_date": { + "value": 1978.0013698630137, + "confidence": [ + 1978.0013698630137, + 1978.4452811551064 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1978", + "confidence": { + "1978": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26C", + "T28C", + "A52C", + "G3089A", + "C4133T", + "C4216T", + "T7091C", + "C9709T" + ], + "nsP1": [ + "K3T" + ], + "nsP3": [ + "S62L" + ] + }, + "labels": { + "aa": "nsP1: K3T; nsP3: S62L" + } + } + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000120", + "node_attrs": { + "div": 0.8986954114141689, + "num_date": { + "value": 1971.878452193236, + "confidence": [ + 1971.7993630304875, + 1971.9317429601322 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.9999285309712745 + }, + "entropy": 0.0008349138207519766 + }, + "year": { + "value": "1971", + "confidence": { + "1968": 0.016090070066979004, + "1970": 0.0037903510502233684, + "1971": 0.8895742960538168, + "1977": 0.003734741391331344 + }, + "entropy": 0.7502128257621364 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999902758829 + }, + "entropy": 1.8911901500931e-07 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G362T", + "G1289A", + "G1856A", + "C1865T", + "T2006C", + "A2108G", + "C2120A", + "A2150G", + "C2561T", + "C2717T", + "C3008T", + "C3296T", + "C3479T", + "C3498T", + "T3524C", + "T4200C", + "C4226T", + "T4232C", + "G4481C", + "T4586C", + "T4664C", + "C4749T", + "C4931T", + "T5127C", + "C5394A", + "A5471C", + "C6134T", + "C6398T", + "C6666T", + "T6714C", + "C6911T", + "T6959A", + "C7178T", + "C7196A", + "T7445C", + "T7512G", + "T7978C", + "C8110T", + "G8395A", + "A8713C", + "G9216A", + "A9508G", + "T9517C", + "A9721G", + "G9775A", + "C9874T", + "C10079T", + "C10147T", + "T10468C", + "G10489T", + "T11155C" + ], + "E2": [ + "S218N" + ], + "nsP1": [ + "E106D" + ], + "nsP2": [ + "H617Y" + ], + "nsP3": [ + "S366P", + "L455M", + "L480F" + ], + "nsP4": [ + "S604A" + ] + }, + "labels": { + "aa": "E2: S218N; nsP1: E106D; nsP2: H617Y; nsP3: S366P, L455M, L480F; nsP4: S604A" + } + }, + "children": [ + { + "name": "KC344466.1", + "node_attrs": { + "div": 0.8996781014141688, + "num_date": { + "value": 1971.9986301369863, + "confidence": [ + 1971.9496409413077, + 1971.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1971", + "confidence": { + "1971": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "La_Avellana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C254T", + "C1544T", + "T2986C", + "C4981T", + "C5458T", + "C8122T", + "T9094C", + "T9124C", + "T9302C", + "C10485T", + "C10486T" + ], + "E1": [ + "T162I" + ], + "E2": [ + "S247P" + ], + "nsP2": [ + "M446T" + ], + "nsP3": [ + "S317F", + "A476V" + ] + }, + "labels": { + "aa": "E1: T162I; E2: S247P; nsP2: M446T; nsP3: S317F, A476V" + } + } + }, + { + "name": "NODE_0000121", + "node_attrs": { + "div": 0.9031793114141689, + "num_date": { + "value": 1993.5484394609616, + "confidence": [ + 1992.4942638948057, + 1993.997827977758 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9996517133170052 + }, + "entropy": 0.0035370599723068903 + }, + "year": { + "value": "1993", + "confidence": { + "1993": 0.8188094540596733, + "1996": 0.03533730165740862, + "1997": 0.0051497337254766224, + "2001": 0.00720612496984252 + }, + "entropy": 1.1149025546608253 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999278174379292 + }, + "entropy": 0.0007605353923187064 + }, + "place_of_collection": { + "value": "Chiapas_State" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T887C", + "T1274C", + "A1292G", + "A1682G", + "C2129T", + "C2243T", + "C2342A", + "A2525G", + "A2822G", + "G3041A", + "T3287C", + "C3311T", + "C3317T", + "A3655G", + "T4211C", + "T4622C", + "A4718G", + "T4910A", + "C5606T", + "C5642T", + "C5924A", + "C6035T", + "G6251A", + "T6395A", + "T6434A", + "T6437C", + "C6545T", + "G6800A", + "T7040C", + "C7439A", + "A7862C", + "C8084T", + "T8461C", + "T8515C", + "A8983G", + "T9187G", + "G9283A", + "G9523A", + "A9748G", + "C9760T", + "T9958C", + "C10084T", + "T10397C", + "T10411C", + "T10600C", + "T10828C", + "T11218A", + "C11364T", + "C11423T" + ], + "CP": [ + "N101H" + ], + "nsP2": [ + "N669S" + ] + }, + "labels": { + "aa": "CP: N101H; nsP2: N669S" + } + }, + "children": [ + { + "name": "AF448537.1", + "node_attrs": { + "div": 0.9046317714141688, + "num_date": { + "value": 1993.8824673019567, + "confidence": [ + 1993.0013698630137, + 1993.9986301369863 + ] + }, + "author": { + "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", + "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1993", + "confidence": { + "1993": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9997301741563426 + }, + "entropy": 0.0024871463991766197 + }, + "place_of_collection": { + "value": "Chiapas_State" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C578T", + "C1769T", + "C1928T", + "T1979C", + "C2045T", + "C2759T", + "G3089A", + "C3327A", + "C5095T", + "A5945G", + "T5957C", + "C8551T", + "G8912A", + "C9391T", + "T10339C", + "T10720C" + ], + "E2": [ + "E117K" + ], + "nsP2": [ + "Q560K" + ], + "nsP3": [ + "S355L" + ] + }, + "labels": { + "aa": "E2: E117K; nsP2: Q560K; nsP3: S355L" + } + } + }, + { + "name": "NODE_0000122", + "node_attrs": { + "div": 0.9039796414141689, + "num_date": { + "value": 1996.7651373903245, + "confidence": [ + 1996.6459536473758, + 1996.8679256204784 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999974164313835 + }, + "entropy": 4.096308346354715e-05 + }, + "year": { + "value": "1996", + "confidence": { + "1993": 0.03155998386960726, + "1996": 0.781615155099338, + "2001": 0.07295220904823112, + "2003": 0.004123295566474414 + }, + "entropy": 1.1701643907764505 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999991439217392 + }, + "entropy": 1.2816263126656537e-05 + }, + "place_of_collection": { + "value": "Chiapas_State" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T710C", + "A1503G", + "C2426T", + "T3231C", + "C3254T", + "C4496T", + "C6782T", + "C10771T", + "T11095C" + ], + "nsP1": [ + "I487V" + ] + }, + "labels": { + "aa": "nsP1: I487V" + } + }, + "children": [ + { + "name": "KC344515.1", + "node_attrs": { + "div": 0.9067804314141689, + "num_date": { + "value": 2001.0013698630137, + "confidence": [ + 2001.0013698630137, + 2001.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2001", + "confidence": { + "2001": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Chiapas_State" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A53G", + "A470G", + "C554T", + "T755C", + "C758T", + "T1955C", + "C2085T", + "C2855T", + "C3257T", + "C3326T", + "C3394T", + "G3519A", + "C3818T", + "G3878A", + "C5232T", + "T5429C", + "C5607T", + "T6651C", + "C6722T", + "C6758T", + "A6974T", + "C7062T", + "T7158C", + "A7256G", + "T7328C", + "T8080C", + "C8134T", + "T9295C", + "T9730C", + "T10099C", + "T10538C" + ], + "E1": [ + "Y180H" + ], + "nsP2": [ + "A582V", + "A624T" + ], + "nsP3": [ + "H401Y" + ] + }, + "labels": { + "aa": "E1: Y180H; nsP2: A582V, A624T; nsP3: H401Y" + } + } + }, + { + "name": "NODE_0000123", + "node_attrs": { + "div": 0.9043396014141689, + "num_date": { + "value": 1996.8558843833728, + "confidence": [ + 1996.7765619451964, + 1996.926949657308 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999998230670315 + }, + "entropy": 3.281639873389749e-06 + }, + "year": { + "value": "1996", + "confidence": { + "1993": 0.01410165199928871, + "1996": 0.8724944024839159, + "2001": 0.0575394146597925, + "2003": 0.0024400895205719383 + }, + "entropy": 0.7152668051579217 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999982827113022 + }, + "entropy": 2.4513887145382814e-05 + }, + "place_of_collection": { + "value": "Oaxaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A1556G", + "A2567G", + "A2969G", + "C10027T" + ] + } + }, + "children": [ + { + "name": "NODE_0000124", + "node_attrs": { + "div": 0.9049680114141689, + "num_date": { + "value": 1996.934336869947, + "confidence": [ + 1996.874558338359, + 1996.9774667721194 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999946519348 + }, + "entropy": 1.186393332258161e-07 + }, + "year": { + "value": "1996", + "confidence": { + "1996": 0.9994743548481588 + }, + "entropy": 0.005579692185510839 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9998798916457934 + }, + "entropy": 0.001204333217436361 + }, + "place_of_collection": { + "value": "Oaxaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2579T", + "A4292G", + "A6224G", + "A6287G", + "T6851G", + "C10420T", + "C10873T" + ] + } + }, + "children": [ + { + "name": "AF448538.1", + "node_attrs": { + "div": 0.9049691614141689, + "num_date": { + "value": 1996.946216983096, + "confidence": [ + 1996.8906617714872, + 1996.9928846017347 + ] + }, + "author": { + "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", + "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1996", + "confidence": { + "1996": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9997615561776038 + }, + "entropy": 0.002227365163628556 + }, + "place_of_collection": { + "value": "Oaxaca" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000125", + "node_attrs": { + "div": 0.905057611414169, + "num_date": { + "value": 1996.9527147298847, + "confidence": [ + 1996.9011044384033, + 1996.9857736306524 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999948277368 + }, + "entropy": 1.1500734236927287e-07 + }, + "year": { + "value": "1996", + "confidence": { + "1996": 0.9999967994383249 + }, + "entropy": 5.078388848056665e-05 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9997615561776038 + }, + "entropy": 0.0022273651636285554 + }, + "place_of_collection": { + "value": "Oaxaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G8912A" + ], + "E2": [ + "E117K" + ] + }, + "labels": { + "aa": "E2: E117K" + } + }, + "children": [ + { + "name": "AF448535.1", + "node_attrs": { + "div": 0.905058761414169, + "num_date": { + "value": 1996.9661135040196, + "confidence": [ + 1996.920422111601, + 1996.9986338797814 + ] + }, + "author": { + "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", + "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1996", + "confidence": { + "1996": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9996432762806247 + }, + "entropy": 0.0031885287993174143 + }, + "place_of_collection": { + "value": "Chiapas_State" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "AF448536.1", + "node_attrs": { + "div": 0.9053277614141689, + "num_date": { + "value": 1996.9986338797814, + "confidence": [ + 1996.9539345074436, + 1996.9986338797814 + ] + }, + "author": { + "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", + "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1996", + "confidence": { + "1996": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9996432762806247 + }, + "entropy": 0.0031885287993174143 + }, + "place_of_collection": { + "value": "Oaxaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A580C", + "T5209A", + "T5395G" + ], + "nsP1": [ + "D179A" + ], + "nsP3": [ + "V393E", + "M455R" + ] + }, + "labels": { + "aa": "nsP1: D179A; nsP3: V393E, M455R" + } + } + } + ] + } + ] + }, + { + "name": "NODE_0000126", + "node_attrs": { + "div": 0.9047895714141689, + "num_date": { + "value": 2001.1886050660696, + "confidence": [ + 2001.0423291626416, + 2001.318715461143 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.999998017394222 + }, + "entropy": 3.2400975596888324e-05 + }, + "year": { + "value": "2001", + "confidence": { + "1996": 0.018358590766106096, + "2000": 0.003821126079819398, + "2001": 0.8434143067441392, + "2003": 0.0620821470010606 + }, + "entropy": 0.8725541908146608 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999944986222 + }, + "entropy": 1.101260518882093e-07 + }, + "place_of_collection": { + "value": "Las_Coaches" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1604G", + "G2474A", + "C2666T", + "A6479G", + "G9686A" + ], + "E2": [ + "A375T" + ] + }, + "labels": { + "aa": "E2: A375T" + } + }, + "children": [ + { + "name": "AY823299.1", + "node_attrs": { + "div": 0.906321601414169, + "num_date": { + "value": 2001.4972602739726, + "confidence": [ + 2001.4972602739726, + 2001.5703949321467 + ] + }, + "author": { + "author": "Weaver,S.C.", + "value": "Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "2001", + "confidence": { + "2001": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Las_Coaches" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C107T", + "A544C", + "A1319G", + "G1670A", + "T1712C", + "G2258A", + "T3500C", + "T3600C", + "T5034C", + "C5963T", + "G6362T", + "T7642C", + "T8032C", + "A11002T", + "T11116C", + "T11170C", + "T11275G" + ], + "nsP1": [ + "N167T" + ], + "nsP3": [ + "S335P" + ] + }, + "labels": { + "aa": "nsP1: N167T; nsP3: S335P" + } + } + }, + { + "name": "NODE_0000127", + "node_attrs": { + "div": 0.906053591414169, + "num_date": { + "value": 2003.2624720021959, + "confidence": [ + 2003.101131224833, + 2003.363492893096 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.999996316309473 + }, + "entropy": 5.8013430518106884e-05 + }, + "year": { + "value": "2003", + "confidence": { + "1996": 0.0044393941189116715, + "2001": 0.07761266913534949, + "2003": 0.8186273410437391, + "2010": 0.005586483217548566 + }, + "entropy": 0.9892358879865272 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999910434985 + }, + "entropy": 1.749264112397585e-07 + }, + "place_of_collection": { + "value": "Las_Coaches" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26C", + "C807T", + "C1340T", + "C3287T", + "G3380A", + "C4112T", + "T5993C", + "T6062A", + "A7511T", + "C8590T", + "C9019T", + "T9326C", + "C9622T", + "C10348A" + ] + } + }, + "children": [ + { + "name": "KC344465.1", + "node_attrs": { + "div": 0.909139881414169, + "num_date": { + "value": 2010.5630136986301, + "confidence": [ + 2010.5630136986301, + 2010.5630136986301 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "El_Dorado" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1022T", + "G1286A", + "C3209T", + "C3366T", + "T3625A", + "G4286A", + "C4621T", + "T5270C", + "C5354T", + "G5431A", + "G6311A", + "C6869T", + "T6911C", + "C7406T", + "C7862A", + "C8000T", + "C8134T", + "A8621G", + "A9202G", + "G9244A", + "C9349T", + "T9388C", + "C9682T", + "A9743G", + "C9796T", + "T10087C", + "T10159C", + "C10481T", + "T10886C", + "G10966T", + "A11165G", + "A11362C", + "G11431T", + "T11432G" + ], + "CP": [ + "H101N" + ], + "E1": [ + "T389A" + ], + "E2": [ + "I20V", + "I394V" + ], + "nsP2": [ + "F659Y" + ], + "nsP3": [ + "T197I", + "R467K" + ] + }, + "labels": { + "aa": "CP: H101N; E1: T389A; E2: I20V, I394V; nsP2: F659Y; nsP3: T197I, R467K" + } + } + }, + { + "name": "NODE_0000128", + "node_attrs": { + "div": 0.907768541414169, + "num_date": { + "value": 2003.5876712328768, + "confidence": [ + 2003.5493667230671, + 2003.5876712328768 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999894875455 + }, + "entropy": 2.2555196375272015e-07 + }, + "year": { + "value": "2003", + "confidence": { + "2003": 0.9995428413378978 + }, + "entropy": 0.005049384526877019 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999743135 + }, + "entropy": 6.500719601310395e-10 + }, + "place_of_collection": { + "value": "Las_Coaches" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G329A", + "C342T", + "C905T", + "C1175T", + "T3617C", + "A4442G", + "T4529C", + "C4979T", + "T6272C", + "C7395T", + "T8173C", + "C8875T", + "C9265T", + "T9670C", + "C9826T", + "A10016T", + "A10403G", + "T11200C", + "T11423C" + ], + "E1": [ + "T6S", + "I135V" + ] + }, + "labels": { + "aa": "E1: T6S, I135V" + } + }, + "children": [ + { + "name": "KC344464.1", + "node_attrs": { + "div": 0.907769691414169, + "num_date": { + "value": 2003.5876712328768, + "confidence": [ + 2003.5876712328768, + 2003.5876712328768 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2003", + "confidence": { + "2003": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Las_Coaches" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "KC344482.1", + "node_attrs": { + "div": 0.908126921414169, + "num_date": { + "value": 2003.6475348464419, + "confidence": [ + 2003.5922620741517, + 2003.7318161169294 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2003", + "confidence": { + "2003": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Chiapas_State" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C26A", + "G10226A", + "G10228A", + "T10246G" + ], + "E1": [ + "E76K" + ] + }, + "labels": { + "aa": "E1: E76K" + } + } + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000129", + "node_attrs": { + "div": 0.8806855314141688, + "num_date": { + "value": 1962.615091698532, + "confidence": [ + 1962.4264400871195, + 1962.7630482420059 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Guatemala": 0.011305879284021363, + "Mexico": 0.9881955192082515 + }, + "entropy": 0.06697869627687196 + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.5667722187554791, + "1964": 0.01130658172252904, + "1967": 0.15917494168490573, + "1968": 0.028571650870889347 + }, + "entropy": 1.9832790474024946 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999997228761 + }, + "entropy": 5.7373654037143894e-08 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C452T", + "C599T", + "T1191C", + "C2660T", + "C2717T", + "T2879C", + "T3935C", + "G3974A", + "G4244T", + "T4829C", + "T4907C", + "G5109A", + "C5116G", + "C5202A", + "T5370C", + "T5720C", + "T5870C", + "G5984T", + "G6131A", + "C6422T", + "T6477C", + "C6881T", + "C7612T", + "A7688C", + "A7942G", + "T8509C", + "T8689C", + "A9379G", + "T9478C", + "A9598G", + "C9622T", + "G9895A", + "T10261C", + "C10672A", + "T11056C", + "T11161C" + ], + "nsP3": [ + "A360T", + "A362G", + "H391N", + "C447R" + ] + }, + "labels": { + "aa": "nsP3: A360T, A362G, H391N, C447R" + } + }, + "children": [ + { + "name": "KC344439.1", + "node_attrs": { + "div": 0.8918276114141689, + "num_date": { + "value": 1967.0013698630137, + "confidence": [ + 1967.0013698630137, + 1967.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1967", + "confidence": { + "1967": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C80T", + "C228T", + "T401C", + "T620C", + "T692C", + "C815T", + "C905T", + "A926T", + "C1028T", + "G1049A", + "C1106T", + "T1151C", + "G1205A", + "C1220T", + "T1247C", + "T1430C", + "T1469C", + "G1547A", + "T1655A", + "C1667T", + "C1733T", + "A1958G", + "T1967C", + "C1991T", + "C2213T", + "T2414C", + "C2726T", + "A2732G", + "T2738C", + "A2744G", + "A2810G", + "C2849T", + "C3195T", + "T3242A", + "T3417C", + "T3425C", + "T3464C", + "T3743C", + "C3836T", + "T3898C", + "G4013A", + "C4100T", + "A4127T", + "A4160G", + "A4289G", + "T4316C", + "C4619T", + "C4808T", + "C4886T", + "A4895G", + "T4976C", + "A5092T", + "C5101T", + "A5142G", + "G5157A", + "C5232T", + "G5254A", + "T5293C", + "C5318T", + "C5354T", + "G5381A", + "T5385C", + "C5444T", + "A5468G", + "C5600T", + "C5603T", + "C5867T", + "A5925G", + "C6212T", + "C6394T", + "T6497C", + "T6506C", + "G6533A", + "G6602A", + "C6704T", + "G6776A", + "C7091T", + "C7100T", + "C7103T", + "C7193T", + "C7196T", + "T7211C", + "T7217C", + "T7262C", + "G7280A", + "T7421C", + "C7771T", + "C7813T", + "A7862C", + "A7863C", + "T7864C", + "T7867C", + "G7871A", + "C7918T", + "G7967A", + "C8026T", + "C8038T", + "C8041T", + "T8045C", + "A8065G", + "C8257T", + "T8401C", + "G8431A", + "C8576T", + "G8707A", + "T8866C", + "C8920T", + "C9012T", + "T9013G", + "A9097G", + "T9172C", + "C9184T", + "T9187A", + "A9367G", + "T9493C", + "T9604C", + "G9688A", + "C9781A", + "G9803A", + "G9853A", + "C10138T", + "C10180T", + "G10198A", + "G10327A", + "C10576T", + "A10639G", + "T10717G", + "C10789T", + "T11155C", + "T11393C" + ], + "CP": [ + "N101P", + "G104S", + "V136I" + ], + "E2": [ + "P150L", + "V414I" + ], + "nsP2": [ + "V750A" + ], + "nsP3": [ + "E354V", + "S357L", + "T371A", + "V376M", + "H401Y", + "S408N", + "V421A" + ], + "nsP4": [ + "I75V", + "A231V" + ] + }, + "labels": { + "aa": "CP: N101P, G104S, V136I; E2: P150L, V414I; nsP2: V750A; nsP3: E354V, S357L, T371A, V376M, H401Y, S408N, V421A; nsP4: I75V, A231V" + } + } + }, + { + "name": "NODE_0000130", + "node_attrs": { + "div": 0.8900259214141688, + "num_date": { + "value": 1963.4055646414045, + "confidence": [ + 1963.3566195082003, + 1963.464500523169 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999375211848 + }, + "entropy": 1.1227320607309984e-06 + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.9924780132937913, + "1964": 0.0021976215242081893, + "1965": 0.001279844881965892, + "1967": 0.002954008021564383 + }, + "entropy": 0.0579049320207236 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999998901 + }, + "entropy": 2.1344824700515582e-12 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G209A", + "A299G", + "C593T", + "C1485T", + "C1499T", + "C1553T", + "A1739G", + "C1769T", + "C1802T", + "G1820A", + "A2012G", + "T2228C", + "G2390A", + "C2510T", + "C2846T", + "G2918A", + "T3065C", + "T3416C", + "T3428C", + "A3446C", + "T3500C", + "A3608T", + "C3660T", + "T3851A", + "G4115A", + "T4169C", + "T4170C", + "G4202A", + "A4292G", + "T4325C", + "T4445C", + "T4628C", + "T4694C", + "T4700C", + "C4811T", + "T4872C", + "T4955C", + "C5018T", + "A5041G", + "A5228T", + "G5231A", + "G5236A", + "C5274T", + "A5329G", + "A5334G", + "T5580G", + "T5735C", + "C5831T", + "C6035T", + "G6182A", + "T6204C", + "C6236A", + "A6269G", + "A6299G", + "T6431C", + "C6869T", + "C6953T", + "G7121A", + "C7214T", + "C7247T", + "T7259C", + "G7268A", + "C7693T", + "T7726C", + "A7855C", + "T8095A", + "C8239T", + "C8260T", + "A8317G", + "C8390T", + "C8527T", + "A8917G", + "A9076T", + "A9160G", + "T9349C", + "T9409C", + "T9668C", + "C9682T", + "T9727C", + "T10204C", + "G10333A", + "C10366T", + "C10459T", + "C10912T", + "C10960T", + "T11083C", + "T11323C" + ], + "nsP2": [ + "L599F", + "E653D" + ], + "nsP3": [ + "N337S", + "E399D", + "R402H", + "R415C", + "N433S", + "T435A", + "S517A" + ] + }, + "labels": { + "aa": "nsP2: L599F, E653D; nsP3: N337S, E399D, R402H, R415C, N433S, T435A, S517A" + } + }, + "children": [ + { + "name": "NODE_0000131", + "node_attrs": { + "div": 0.8908392614141688, + "num_date": { + "value": 1964.4739249066172, + "confidence": [ + 1964.2895356288784, + 1964.72107800735 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9990911711415147 + }, + "entropy": 0.007632171551153645 + }, + "year": { + "value": "1965", + "confidence": { + "1963": 0.27570258504755, + "1965": 0.5260088148380208, + "1967": 0.08264410872114106, + "1968": 0.006096587294749746 + }, + "entropy": 1.581819984646654 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999974045204 + }, + "entropy": 5.390480152485585e-08 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A2543G", + "A3149G", + "G4040A", + "C4088T", + "A4577G", + "A5245G", + "T5963C", + "C6704T", + "T7229C" + ], + "nsP3": [ + "Q405R" + ] + }, + "labels": { + "aa": "nsP3: Q405R" + } + }, + "children": [ + { + "name": "KC344433.1", + "node_attrs": { + "div": 0.8944762714141689, + "num_date": { + "value": 1967.0013698630137, + "confidence": [ + 1967.0013698630137, + 1967.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Belize", + "confidence": { + "Belize": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1967", + "confidence": { + "1967": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Belize" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C464T", + "T566C", + "T620C", + "C638T", + "G1433T", + "T1622C", + "A1760G", + "C1964T", + "C3195T", + "C3428T", + "T3444C", + "C3552T", + "C3833T", + "C3992T", + "C4075T", + "T4340C", + "C5318T", + "T6062A", + "C6419T", + "T6422C", + "A6614G", + "C6812T", + "T7028C", + "T7328C", + "G7471T", + "G7714A", + "C7855A", + "G8104A", + "C8149T", + "C8164T", + "T8413C", + "C8497T", + "C8623T", + "T8798C", + "T9235C", + "C9409T", + "T9946C", + "C10558T", + "T10630C", + "A11331C", + "C11423T" + ], + "nsP2": [ + "F599L" + ], + "nsP3": [ + "T15M" + ], + "nsP4": [ + "S590I" + ] + }, + "labels": { + "aa": "nsP2: F599L; nsP3: T15M; nsP4: S590I" + } + } + }, + { + "name": "KC344446.1", + "node_attrs": { + "div": 0.8930903414141688, + "num_date": { + "value": 1965.0013698630137, + "confidence": [ + 1965.0013698630137, + 1965.1960909684947 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1965", + "confidence": { + "1965": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A363T", + "C2249T", + "G3173A", + "T3194C", + "G3371T", + "C3410A", + "C3836T", + "C3935T", + "T3947C", + "T4331C", + "T4480C", + "T5984G", + "C6065T", + "C7184T", + "T7233A", + "G7362A", + "T7429C", + "C8158T", + "A8344G", + "G8584A", + "C9326T", + "T9841A", + "C10540T", + "A10672T" + ], + "nsP1": [ + "I107F" + ], + "nsP3": [ + "V150A" + ], + "nsP4": [ + "C511S", + "A554T", + "V576A" + ] + }, + "labels": { + "aa": "nsP1: I107F; nsP3: V150A; nsP4: C511S, A554T, V576A" + } + } + } + ] + }, + { + "name": "NODE_0000133", + "node_attrs": { + "div": 0.8916193514141688, + "num_date": { + "value": 1963.6055033130638, + "confidence": [ + 1963.571826166119, + 1963.6440986221583 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999807617632 + }, + "entropy": 4.021374267017768e-07 + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.9922891139502352, + "1964": 0.004703695811754476, + "1967": 0.0013145589901129417 + }, + "entropy": 0.057249440067948965 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999475512 + }, + "entropy": 1.2919847287844516e-09 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T611C", + "T1409C", + "T1691C", + "G2285A", + "C2450T", + "T3194C", + "G4385A", + "G4631A", + "A4817T", + "C5036T", + "C5098T", + "C5267T", + "C6365T", + "T6710C", + "C7711T", + "T8812C", + "A9319G", + "C10564T" + ], + "nsP3": [ + "T356I" + ] + }, + "labels": { + "aa": "nsP3: T356I" + } + }, + "children": [ + { + "name": "NODE_0000074", + "node_attrs": { + "div": 0.8916193514141688, + "num_date": { + "value": 1964.3187411688168, + "confidence": [ + 1964.187645768571, + 1964.414842767997 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.999999420647314 + }, + "entropy": 1.0176470259144763e-05 + }, + "year": { + "value": "1964", + "confidence": { + "1963": 0.2294591700441863, + "1964": 0.7139456273346345, + "1967": 0.0022016866832693153, + "1969": 0.008036576359178189 + }, + "entropy": 0.9466417697644097 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999998490543 + }, + "entropy": 3.2166815387443164e-08 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T7028C" + ] + } + }, + "children": [ + { + "name": "KC344448.1", + "node_attrs": { + "div": 0.8931529914141688, + "num_date": { + "value": 1969.0013698630137, + "confidence": [ + 1969.0013698630137, + 1969.5792029608735 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1969", + "confidence": { + "1969": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26T", + "A1503T", + "A3851G", + "A3890G", + "C4325T", + "A5121T", + "A5164T", + "A5216G", + "T5248C", + "C5642T", + "C7025T", + "C8062A", + "T8173C", + "C8356T", + "T8506C", + "C8581T", + "A9775G" + ], + "nsP1": [ + "I487L" + ], + "nsP3": [ + "R364*", + "E378V", + "V406A" + ] + }, + "labels": { + "aa": "nsP1: I487L; nsP3: R364*, E378V, V406A" + } + } + }, + { + "name": "KC344445.1", + "node_attrs": { + "div": 0.8927928514141689, + "num_date": { + "value": 1964.5669398907103, + "confidence": [ + 1964.5669398907103, + 1964.5669398907103 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Culex opisthopus" + }, + "year": { + "value": "1964", + "confidence": { + "1964": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G709A", + "C1403A", + "C1482T", + "C1721T", + "G2334A", + "G2702A", + "T3417C", + "G5401A", + "C5714T", + "A8341G", + "C9391T", + "C10873T", + "T11116C" + ], + "nsP1": [ + "R222H", + "P480S" + ], + "nsP2": [ + "V229I" + ], + "nsP3": [ + "R457K" + ] + }, + "labels": { + "aa": "nsP1: R222H, P480S; nsP2: V229I; nsP3: R457K" + } + } + } + ] + }, + { + "name": "NODE_0000135", + "node_attrs": { + "div": 0.8919784914141689, + "num_date": { + "value": 1963.6385183681714, + "confidence": [ + 1963.6142268733795, + 1963.6578726697167 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.999999936860623 + }, + "entropy": 1.2473009340562336e-06 + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.9956852279457532, + "1964": 0.0020862630526770607 + }, + "entropy": 0.03671792715577207 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999998279467 + }, + "entropy": 4.038366742169111e-09 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C5699T", + "C6431T", + "T9526C" + ] + } + }, + "children": [ + { + "name": "KC344431.1", + "node_attrs": { + "div": 0.8923409214141689, + "num_date": { + "value": 1963.664383561644, + "confidence": [ + 1963.6480133089221, + 1963.664383561644 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1963", + "confidence": { + "1963": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Verzacruz" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C3059T", + "C7625T", + "C8623T", + "A9508G" + ], + "CP": [ + "P22S" + ] + }, + "labels": { + "aa": "CP: P22S" + } + } + }, + { + "name": "NODE_0000136", + "node_attrs": { + "div": 0.8922489214141689, + "num_date": { + "value": 1965.9938583890166, + "confidence": [ + 1965.9097794361178, + 1966.2069989557156 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999199993301 + }, + "entropy": 1.5616230344056753e-06 + }, + "year": { + "value": "1966", + "confidence": { + "1966": 0.999476522210927 + }, + "entropy": 0.006009374318582467 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999999781701 + }, + "entropy": 5.072394007602622e-09 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C3008T", + "A4174G", + "T8350C" + ], + "nsP3": [ + "Q48R" + ] + }, + "labels": { + "aa": "nsP3: Q48R" + } + }, + "children": [ + { + "name": "KC344440.1", + "node_attrs": { + "div": 0.8925206214141689, + "num_date": { + "value": 1966.0392312469264, + "confidence": [ + 1966.0013698630137, + 1966.2552308242596 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1966", + "confidence": { + "1966": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C5242T", + "T7590C", + "T7993A" + ], + "CP": [ + "M10T" + ], + "nsP3": [ + "A404V" + ] + }, + "labels": { + "aa": "CP: M10T; nsP3: A404V" + } + } + }, + { + "name": "KC344447.1", + "node_attrs": { + "div": 0.8923382414141688, + "num_date": { + "value": 1966.2479452054795, + "confidence": [ + 1966.2479452054795, + 1966.3099886103835 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1966", + "confidence": { + "1966": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Sontecomapan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C3195T" + ] + } + } + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000137", + "node_attrs": { + "div": 0.8905639714141688, + "num_date": { + "value": 1963.4673751344237, + "confidence": [ + 1963.4109914347614, + 1963.4994194517842 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999813902751331 + }, + "entropy": 0.0002398319832978848 + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.9957138967737155, + "1964": 0.0011107642051564402, + "1967": 0.0014553852535741213 + }, + "entropy": 0.03734351472427057 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999996968024 + }, + "entropy": 6.946273210824547e-09 + }, + "place_of_collection": { + "value": "Verzacruz" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T473C", + "T1883C", + "A3266G", + "T5399C", + "T7028C", + "C7702T", + "G7738A", + "C11236T" + ] + } + }, + "children": [ + { + "name": "KC344457.1", + "node_attrs": { + "div": 0.8931492714141688, + "num_date": { + "value": 1963.6150684931506, + "confidence": [ + 1963.6150684931506, + 1963.6150684931506 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1963", + "confidence": { + "1963": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Verzacruz" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G1778C", + "G2222A", + "T2672C", + "T2687C", + "T2819C", + "A3062G", + "C3116T", + "C3401T", + "T4025C", + "C4328T", + "A4661G", + "C4694T", + "C4931T", + "G5028A", + "T5225C", + "C5306T", + "C5672T", + "C5699T", + "A7744G", + "A7812G", + "C8833T", + "C9223T", + "C9461T", + "C9481T", + "T10195C", + "C10405T", + "A11104G" + ], + "CP": [ + "N84S" + ], + "nsP3": [ + "A333T" + ] + }, + "labels": { + "aa": "CP: N84S; nsP3: A333T" + } + } + }, + { + "name": "NODE_0000138", + "node_attrs": { + "div": 0.8974788414141688, + "num_date": { + "value": 1967.510693214275, + "confidence": [ + 1967.1672412371306, + 1967.7738828567037 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Colombia": 0.0704719040353468, + "Ecuador": 0.33560500835316515, + "Guatemala": 0.0033726949504037885, + "Mexico": 0.5739655980322694 + }, + "entropy": 1.000894286166978 + }, + "year": { + "value": "1969", + "confidence": { + "1963": 0.0877175295870955, + "1969": 0.2392945014301403, + "1973": 0.021195873180143213, + "1976": 0.022685477905613708 + }, + "entropy": 3.376213273547057 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999995092266034 + }, + "entropy": 7.620375457112081e-06 + }, + "place_of_collection": { + "value": "Tumaco" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C515T", + "C809T", + "G1412A", + "T1622C", + "A1790G", + "C1796T", + "G2318A", + "A2652C", + "G2801A", + "C3008T", + "T3044C", + "G3137A", + "C3195T", + "C3428T", + "T3494C", + "A3554T", + "T3623C", + "T3857C", + "T3981A", + "C3992T", + "A4034G", + "G4058A", + "C4250T", + "T4298C", + "T4364C", + "T4596C", + "G4862T", + "C4872T", + "T4904C", + "A4919T", + "T4967C", + "A5172G", + "C5189T", + "G5196A", + "A5215T", + "A6055G", + "C6296A", + "T6455C", + "C6608T", + "T6714C", + "C6852T", + "G6857A", + "C7124T", + "T7247A", + "G7747A", + "C7850A", + "G7975A", + "T7978C", + "C8170T", + "T8242C", + "G8314A", + "G8473A", + "C8581T", + "G8593A", + "C8861T", + "C8944T", + "C8980T", + "T9076C", + "C9250T", + "C9403T", + "A9406C", + "A9616G", + "T9643C", + "C9805T", + "T10048C", + "C10312T", + "G10426A", + "C10558T", + "G10684A", + "T11036C", + "A11191G", + "T11200A" + ], + "CP": [ + "P97T" + ], + "nsP2": [ + "S778T" + ], + "nsP3": [ + "S381G", + "A389T", + "Q395L" + ], + "nsP4": [ + "K118R" + ] + }, + "labels": { + "aa": "CP: P97T; nsP2: S778T; nsP3: S381G, A389T, Q395L; nsP4: K118R" + } + }, + "children": [ + { + "name": "NODE_0000139", + "node_attrs": { + "div": 0.9091599114141687, + "num_date": { + "value": 1969.1962320149084, + "confidence": [ + 1969.0774582533534, + 1969.3300993325497 + ] + }, + "country": { + "value": "Ecuador", + "confidence": { + "Colombia": 0.1769059192082406, + "Ecuador": 0.7656002522688928, + "Mexico": 0.053613820852517174 + }, + "entropy": 0.6987944681974999 + }, + "year": { + "value": "1969", + "confidence": { + "1963": 0.023504152576568862, + "1969": 0.6281792503544613, + "1975": 0.02057816659549708, + "1976": 0.019591104650541247 + }, + "entropy": 2.054541664583813 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999911234859 + }, + "entropy": 1.7344381465484367e-07 + }, + "place_of_collection": { + "value": "Tumaco" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G16C", + "A25T", + "C29T", + "A31C", + "T32A", + "A44C", + "T77A", + "A95T", + "A98G", + "C107T", + "C110T", + "G113A", + "G143A", + "C149T", + "C161T", + "A230C", + "T248C", + "T263C", + "C266A", + "A275G", + "C281T", + "T311C", + "C606T", + "C638T", + "C671T", + "A674T", + "T678C", + "C798A", + "A800G", + "T804C", + "G812A", + "C815T", + "G827A", + "C830T", + "T833G", + "T836C", + "C840T", + "T848C", + "G854A", + "T863A", + "C902T", + "A926T", + "T929C", + "C986T", + "G992A", + "G995A", + "G1004A", + "C1022T", + "C1028T", + "G1040C", + "C1043T", + "G1049A", + "G1058A", + "A1073C", + "T1079A", + "G1112A", + "A1139C", + "A1142C", + "T1154C", + "T1160A", + "T1172C", + "A1178C", + "T1190C", + "C1191T", + "T1194C", + "A1235G", + "C1238T", + "A1241G", + "T2177C", + "T2291C", + "G2297A", + "A2701G", + "C3446A", + "C3641T", + "T3674C", + "C3677T", + "C4460T", + "A6236C", + "G6251A", + "G6269A", + "G6287A", + "C7193T", + "C7230T", + "T7475C", + "C8158T", + "C8374T", + "T8594C", + "C9637T", + "A9943G", + "G9947T", + "T9987C", + "A9988C", + "T10960C", + "G10966T", + "A11098G", + "A11118T", + "T11119C", + "G11134T", + "G11149T", + "C11161T" + ], + "6k": [ + "V39L", + "V52A" + ], + "E1": [ + "Y373F" + ], + "nsP1": [ + "D11E" + ], + "nsP2": [ + "K351R", + "F599L" + ] + }, + "labels": { + "aa": "6k: V39L, V52A; E1: Y373F; nsP1: D11E; nsP2: K351R, F599L" + } + }, + "children": [ + { + "name": "KC344529.1", + "node_attrs": { + "div": 0.9118486014141688, + "num_date": { + "value": 1976.0013661202186, + "confidence": [ + 1976.0013661202186, + 1976.8989071038252 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Ecuador", + "confidence": { + "Ecuador": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1976", + "confidence": { + "1976": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Vinches" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A77C", + "C644T", + "C725T", + "T739A", + "T1007C", + "C1040T", + "T1151C", + "T1217C", + "T1802C", + "G3452T", + "T3476C", + "C3479A", + "T3617G", + "T3620A", + "C3623A", + "C3626T", + "C4628T", + "T4833C", + "T5034C", + "G5381A", + "G5382A", + "C5394A", + "C5870T", + "C6204T", + "A6218G", + "A6296C", + "G6299A", + "G6854A", + "T7490G", + "T7493C", + "G7496A", + "G7503A", + "T7508A", + "T7512A", + "C7514T", + "C7540T", + "G7544A", + "C8026A", + "C8032T", + "C8092T", + "A8095T", + "C8098T", + "T8260C", + "A8734C", + "C8743T", + "C8758G", + "T8776C", + "A8785T", + "A8947G", + "G9937A", + "C9938T", + "G10963A" + ], + "nsP1": [ + "E11D", + "F232Y" + ], + "nsP2": [ + "D656E" + ], + "nsP3": [ + "S335P", + "G451R", + "L455M" + ], + "nsP4": [ + "S596R", + "A601T", + "S604T" + ] + }, + "labels": { + "aa": "nsP1: E11D, F232Y; nsP2: D656E; nsP3: S335P, G451R, L455M; nsP4: S596R, A601T, S604T" + } + } + }, + { + "name": "NODE_0000140", + "node_attrs": { + "div": 0.9130053314141687, + "num_date": { + "value": 1969.5573271607036, + "confidence": [ + 1969.3963312786175, + 1969.648711817299 + ] + }, + "country": { + "value": "Ecuador", + "confidence": { + "Colombia": 0.21482157227142287, + "Ecuador": 0.7544242295346707, + "Mexico": 0.028604088008894128 + }, + "entropy": 0.6630591232069998 + }, + "year": { + "value": "1969", + "confidence": { + "1963": 0.012752481331727704, + "1969": 0.7741083285204957, + "1975": 0.019552616438635727, + "1976": 0.010854367861949099 + }, + "entropy": 1.3746119407379276 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999983188326 + }, + "entropy": 3.5645101571274974e-08 + }, + "place_of_collection": { + "value": "Tumaco" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T180C", + "A185T", + "A188G", + "T192C", + "G200A", + "A212C", + "T325A", + "T533C", + "T536C", + "C542T", + "G551A", + "T554C", + "T584A", + "C587A", + "C590A", + "T599C", + "G602A", + "G608A", + "G680A", + "T692C", + "C782A", + "A1088C", + "A1100C", + "G1109A", + "A2555G", + "C2558A", + "T2576C", + "T2579C", + "A2594T", + "G5039A", + "G5041A", + "A5109G", + "G5116C", + "T9952C", + "T9958G", + "T10000C" + ], + "nsP1": [ + "E56D", + "F94Y" + ], + "nsP3": [ + "S337N", + "T360A", + "G362A" + ] + }, + "labels": { + "aa": "nsP1: E56D, F94Y; nsP3: S337N, T360A, G362A" + } + }, + "children": [ + { + "name": "KC344530.1", + "node_attrs": { + "div": 0.9192698214141687, + "num_date": { + "value": 1969.9986301369863, + "confidence": [ + 1969.9300374573986, + 1969.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1969", + "confidence": { + "1969": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Tumaco" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C28T", + "A320G", + "G344T", + "C578T", + "C791T", + "C953T", + "C1037T", + "C1052T", + "T1116C", + "C1175T", + "C1178T", + "A1196G", + "C1199A", + "A1260C", + "A1265C", + "T1274C", + "G1277A", + "C1281A", + "C1283A", + "G1289A", + "A1292C", + "G2600A", + "C2726T", + "C3410T", + "T3987C", + "T5018C", + "C5023T", + "T5228A", + "A5231G", + "C5232T", + "C5234T", + "A5236G", + "G5254A", + "C5255T", + "T5984G", + "T6215C", + "G7175A", + "C8000T", + "C8356T", + "T8390C", + "C8407T", + "C8408T", + "C8782T", + "C10204T", + "T10717G", + "T10948C", + "T10973G" + ], + "E1": [ + "S325A" + ], + "nsP3": [ + "A331V", + "D399E", + "H401Y", + "H402R", + "S408N" + ] + }, + "labels": { + "aa": "E1: S325A; nsP3: A331V, D399E, H401Y, H402R, S408N" + } + } + }, + { + "name": "KC344531.1", + "node_attrs": { + "div": 0.9216581914141687, + "num_date": { + "value": 1975.0013698630137, + "confidence": [ + 1975.0013698630137, + 1975.5006169963265 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Ecuador", + "confidence": { + "Ecuador": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex (Melanoconion) sp." + }, + "year": { + "value": "1975", + "confidence": { + "1975": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Ecuador" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A33T", + "T146C", + "A191G", + "T242C", + "C311T", + "T515C", + "A518G", + "T530C", + "A575C", + "T593C", + "A614T", + "A617C", + "T620C", + "C644T", + "C686T", + "G695T", + "G701A", + "A707G", + "G716C", + "C725T", + "T728C", + "A731G", + "G734A", + "T739A", + "T741C", + "A749C", + "C752A", + "G759A", + "T770A", + "A773C", + "A776T", + "T1007C", + "C1088T", + "T1091C", + "T1151C", + "T1217C", + "T1928C", + "C2291T", + "A2297G", + "C2537T", + "T2540C", + "A2546C", + "A2918G", + "A3137G", + "A3446C", + "C3494T", + "C3500T", + "C3503T", + "C3857T", + "A3981T", + "T4244G", + "T4625C", + "C4628T", + "T4833C", + "T5127C", + "C5147T", + "C5870T", + "T6170C", + "A6218G", + "A6251G", + "A6269C", + "A6341G", + "T6869C", + "T6953C", + "A6956G", + "T6959G", + "A6974T", + "T7193C", + "C7475T", + "T7490G", + "T7493C", + "G7496A", + "G7503A", + "T7508A", + "T7512A", + "C7514T", + "C7540T", + "G7544A", + "C8098T", + "T8158C", + "G8371A", + "A8375T", + "G8383A", + "C8389A", + "G8392A", + "C8398T", + "A8399G", + "A8402G", + "G8404A", + "T8413C", + "G8420A", + "G8431T", + "C8509T", + "A8734C", + "C8758G", + "A8947G", + "A9544G", + "G9937A", + "C9938T", + "G10963A", + "T10984C", + "G11098A", + "C11119T", + "T11134G", + "T11236A", + "G11278A", + "T11279C", + "A11281G", + "T11287C", + "G11288A", + "T11290A", + "A11319G", + "C11323T" + ], + "CP": [ + "S272C" + ], + "E1": [ + "V430I", + "K440R" + ], + "E3": [ + "T5A", + "M6V", + "V12I" + ], + "nsP1": [ + "F232Y", + "V239I" + ], + "nsP2": [ + "L599F", + "T778S" + ], + "nsP3": [ + "S366P" + ], + "nsP4": [ + "S596R", + "A601T", + "S604T" + ] + }, + "labels": { + "aa": "CP: S272C; E1: V430I, K440R; E3: T5A, M6V, V12I; nsP1: F232Y, V239I; nsP2: L599F, T778S; nsP3: S366P; nsP4: S596R, A601T, S604T" + } + } + } + ] + } + ] + }, + { + "name": "NODE_0000141", + "node_attrs": { + "div": 0.8981937614141687, + "num_date": { + "value": 2007.9175113190452, + "confidence": [ + 2007.79358525182, + 2008.0587123240157 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999579971525985 + }, + "entropy": 0.0005655948734885256 + }, + "year": { + "value": "2008", + "confidence": { + "1969": 0.0012226978675090416, + "2008": 0.8602904213609407, + "2009": 0.0913068676372003, + "2010": 0.0031195910972370428 + }, + "entropy": 0.677462357505018 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999725578023 + }, + "entropy": 5.052413506496662e-07 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T611C", + "T2453C", + "T2552C", + "T5034C", + "C5095T", + "C5399T", + "T6215C", + "C6227T", + "T6254C", + "A6266C", + "G6854A", + "C8407T", + "C8408T", + "C8782T", + "T11326C" + ], + "nsP3": [ + "S335P", + "S355L" + ] + }, + "labels": { + "aa": "nsP3: S335P, S355L" + } + }, + "children": [ + { + "name": "KC344463.1", + "node_attrs": { + "div": 0.9014766214141687, + "num_date": { + "value": 2009.823287671233, + "confidence": [ + 2009.823287671233, + 2009.823287671233 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Equus ferus caballus" + }, + "year": { + "value": "2009", + "confidence": { + "2009": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C782A", + "G1508C", + "G2255A", + "G2258A", + "C2328T", + "T2405C", + "C2552T", + "T2819C", + "A2822G", + "T2850C", + "A3638G", + "C3788T", + "G3908A", + "C3998T", + "T4043C", + "C4535T", + "T4664C", + "A4683G", + "G5022A", + "A5132T", + "G5173A", + "A5336G", + "C6368T", + "C6779T", + "C6791A", + "A6854G", + "T7262C", + "C7409T", + "C8062A", + "C8590T", + "G8800A", + "C8998T", + "T9187C", + "C9241T", + "C9303T", + "C9391T", + "G10867A", + "C11311T", + "C11326T" + ], + "E2": [ + "S247L" + ], + "nsP1": [ + "Q488H" + ], + "nsP3": [ + "M218V", + "A331T", + "*367C", + "G381D" + ] + }, + "labels": { + "aa": "E2: S247L; nsP1: Q488H; nsP3: M218V, A331T, *367C, G381D" + } + } + }, + { + "name": "NODE_0000142", + "node_attrs": { + "div": 0.8984290314141687, + "num_date": { + "value": 2007.9786992527143, + "confidence": [ + 2007.8648906942133, + 2008.0808625044851 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999991274816 + }, + "entropy": 2.0501965754774624e-08 + }, + "year": { + "value": "2008", + "confidence": { + "2008": 0.9832951972993318, + "2009": 0.016387427671398096 + }, + "entropy": 0.08740366965888585 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999999999808 + }, + "entropy": 4.4610326921835115e-12 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "KC344449.1", + "node_attrs": { + "div": 0.9014031414141688, + "num_date": { + "value": 2008.5177595628415, + "confidence": [ + 2008.5177595628415, + 2008.5177595628415 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2008", + "confidence": { + "2008": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26C", + "C758T", + "A909C", + "G1565A", + "A1577T", + "A1994G", + "C2531T", + "T3362G", + "C3780T", + "A3840G", + "A3968G", + "T3995C", + "G4548A", + "C4616T", + "A5161G", + "A5236G", + "A6257G", + "G6362A", + "A6509C", + "T6851C", + "T7233C", + "T7241A", + "T7253A", + "T7972C", + "T8137C", + "C8833T", + "C8932T", + "C9151A", + "C9196T", + "C9633A", + "G11008A", + "A11029G", + "G11379T" + ], + "E2": [ + "T357K" + ], + "nsP2": [ + "S731G" + ], + "nsP3": [ + "V173I", + "E377G", + "H402R" + ], + "nsP4": [ + "C511R" + ] + }, + "labels": { + "aa": "E2: T357K; nsP2: S731G; nsP3: V173I, E377G, H402R; nsP4: C511R" + } + } + }, + { + "name": "NODE_0000143", + "node_attrs": { + "div": 0.9017681214141687, + "num_date": { + "value": 2009.6522298386967, + "confidence": [ + 2009.5585888606622, + 2009.721030386392 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999997917835219 + }, + "entropy": 3.865265655053114e-06 + }, + "year": { + "value": "2009", + "confidence": { + "2008": 0.09620325641065561, + "2009": 0.7682574664351015, + "2010": 0.10979676754147948 + }, + "entropy": 0.8618956433322148 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999999431807 + }, + "entropy": 1.266220491894561e-08 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G1727A", + "T2405C", + "C3410A", + "A3539G", + "A3923G", + "G4151A", + "T4727C", + "G4736A", + "A4877G", + "C4886T", + "G5157A", + "A5273G", + "G5382A", + "C5611T", + "A6341G", + "C6728T", + "G7001A", + "G7011A", + "C7172T", + "T7493C", + "C7494T", + "C8368T", + "C8455T", + "G8524A", + "A8734C", + "T9169C", + "C9178T", + "C9290T", + "G9418A", + "C9442T", + "G9460A", + "G9550T", + "C9637T", + "T9652C", + "A10120G", + "A10417G", + "C10540T" + ], + "nsP3": [ + "V376M", + "G451R", + "A527V" + ], + "nsP4": [ + "V437I" + ] + }, + "labels": { + "aa": "nsP3: V376M, G451R, A527V; nsP4: V437I" + } + }, + "children": [ + { + "name": "KC344481.1", + "node_attrs": { + "div": 0.9027558214141688, + "num_date": { + "value": 2009.8205479452056, + "confidence": [ + 2009.8205479452056, + 2009.8205479452056 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Equus ferus caballus" + }, + "year": { + "value": "2009", + "confidence": { + "2009": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A19T", + "T2057C", + "C2416T", + "T3425C", + "A3895G", + "A4305G", + "A4655G", + "C8012T", + "C8362T", + "C8834T", + "A9367T" + ], + "E2": [ + "H91Y" + ], + "nsP2": [ + "A256V", + "K749R" + ], + "nsP3": [ + "I92V" + ] + }, + "labels": { + "aa": "E2: H91Y; nsP2: A256V, K749R; nsP3: I92V" + } + } + }, + { + "name": "NODE_0000144", + "node_attrs": { + "div": 0.9029346614141688, + "num_date": { + "value": 2010.5829591644103, + "confidence": [ + 2010.5576658720274, + 2010.6335858427283 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999756396722 + }, + "entropy": 5.041306585995958e-07 + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9991108516863859 + }, + "entropy": 0.008602040327705533 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999320004 + }, + "entropy": 1.6579804530587684e-09 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C131T", + "G1436A", + "T3614C", + "A5121G", + "T5238C", + "T6098C", + "A6479G", + "A7551G", + "G7781A", + "A8902G", + "G9947A", + "C10786T", + "T11354G" + ], + "6k": [ + "V39M" + ], + "CP": [ + "G74S" + ], + "nsP3": [ + "R364G", + "S403P" + ] + }, + "labels": { + "aa": "6k: V39M; CP: G74S; nsP3: R364G, S403P" + } + }, + "children": [ + { + "name": "KC344468.1", + "node_attrs": { + "div": 0.9029358114141688, + "num_date": { + "value": 2010.592038105367, + "confidence": [ + 2010.5821917808219, + 2010.664383561644 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000145", + "node_attrs": { + "div": 0.9030240414141688, + "num_date": { + "value": 2010.650684931507, + "confidence": [ + 2010.6381632334005, + 2010.650684931507 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999950979 + }, + "entropy": 1.350211042746019e-10 + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999999821074947 + }, + "entropy": 3.682245674764006e-07 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999949 + }, + "entropy": -8.529864605504406e-13 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C11423T" + ] + } + }, + "children": [ + { + "name": "KC344494.1", + "node_attrs": { + "div": 0.9030251914141688, + "num_date": { + "value": 2010.650684931507, + "confidence": [ + 2010.650684931507, + 2010.650684931507 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito pool" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "KC344489.1", + "node_attrs": { + "div": 0.9030240414141688, + "num_date": { + "value": 2010.6534246575343, + "confidence": [ + 2010.6534246575343, + 2010.6534246575343 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "KC344495.1", + "node_attrs": { + "div": 0.9030240414141688, + "num_date": { + "value": 2010.650684931507, + "confidence": [ + 2010.650684931507, + 2010.650684931507 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito pool" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + } + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000148", + "node_attrs": { + "div": 0.8995043814141688, + "num_date": { + "value": 2008.1634019844357, + "confidence": [ + 2008.0836249308506, + 2008.2248943589968 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.999999999981884 + }, + "entropy": 4.869883098546471e-10 + }, + "year": { + "value": "2008", + "confidence": { + "2008": 0.9998606623322479 + }, + "entropy": 0.001411100138218179 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999811 + }, + "entropy": -4.610165785087106e-13 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C65T", + "T77C", + "T2177C", + "C3641T", + "T3674C", + "T4833C", + "A5092C", + "A5207G", + "T6170C", + "T8594C", + "T10936C" + ], + "nsP3": [ + "E354A" + ] + }, + "labels": { + "aa": "nsP3: E354A" + } + }, + "children": [ + { + "name": "KC344451.1", + "node_attrs": { + "div": 0.9019331214141688, + "num_date": { + "value": 2008.5314207650274, + "confidence": [ + 2008.5314207650274, + 2008.5314207650274 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2008", + "confidence": { + "2008": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26C", + "C80T", + "C2453T", + "T2540C", + "A2822T", + "A2940G", + "C3446A", + "C4694T", + "A5099G", + "C5204T", + "C5335T", + "G5387A", + "C5474T", + "T5645C", + "C6294T", + "C6368T", + "T7388C", + "T7786C", + "C7885T", + "C8062A", + "G8578A", + "T8695C", + "C9184T", + "C9904T", + "T10717A", + "T10777C", + "C11326T", + "C11423T" + ], + "nsP2": [ + "I431V", + "F599L" + ], + "nsP3": [ + "A435V" + ] + }, + "labels": { + "aa": "nsP2: I431V, F599L; nsP3: A435V" + } + } + }, + { + "name": "NODE_0000150", + "node_attrs": { + "div": 0.9020229214141687, + "num_date": { + "value": 2008.517758753193, + "confidence": [ + 2008.50198991981, + 2008.5314207650274 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999448544115 + }, + "entropy": 1.0964293003340001e-06 + }, + "year": { + "value": "2008", + "confidence": { + "2008": 0.9977051058849271, + "2009": 0.0020541972740264983 + }, + "entropy": 0.01789181610655043 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999998469107 + }, + "entropy": 3.61091256113195e-09 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G2951A", + "G3302A", + "C3317T", + "G3380A", + "T3428C", + "T3747C", + "C4133T", + "G4190A", + "T4274A", + "C4784T", + "A4817G", + "T5174C", + "C5214T", + "G5906A", + "A6104G", + "T6404C", + "T6680C", + "C7184T", + "T7331C", + "C7448T", + "A7801G", + "T8080C", + "G8572A", + "T8641C", + "T9185A", + "T9466C", + "T10447C", + "T11275C" + ], + "E2": [ + "S208T" + ] + }, + "labels": { + "aa": "E2: S208T" + } + }, + "children": [ + { + "name": "KC344480.1", + "node_attrs": { + "div": 0.9021097214141688, + "num_date": { + "value": 2008.5314207650274, + "confidence": [ + 2008.5314207650274, + 2008.5314207650274 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex taeniopus" + }, + "year": { + "value": "2008", + "confidence": { + "2008": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000132", + "node_attrs": { + "div": 0.9020229214141687, + "num_date": { + "value": 2009.7013462157236, + "confidence": [ + 2009.6591076668096, + 2009.7159793763417 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999689163077 + }, + "entropy": 6.357746490097704e-07 + }, + "year": { + "value": "2009", + "confidence": { + "2008": 0.001090502407287705, + "2009": 0.9987836211138829 + }, + "entropy": 0.010254623991018872 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999135543 + }, + "entropy": 2.0875284805271928e-09 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C11423T" + ] + } + }, + "children": [ + { + "name": "KC344453.1", + "node_attrs": { + "div": 0.9020240714141687, + "num_date": { + "value": 2009.7191780821918, + "confidence": [ + 2009.7191780821918, + 2009.7191780821918 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Coquillettidia nigricans" + }, + "year": { + "value": "2009", + "confidence": { + "2009": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000134", + "node_attrs": { + "div": 0.9020229214141687, + "num_date": { + "value": 2009.7143479898093, + "confidence": [ + 2009.691055133542, + 2009.717579374743 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.999999994798549 + }, + "entropy": 1.1561493084210552e-07 + }, + "year": { + "value": "2009", + "confidence": { + "2009": 0.9999905751671311 + }, + "entropy": 0.00012664126810867454 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999853555 + }, + "entropy": 3.7801506675651916e-10 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "KC344479.1", + "node_attrs": { + "div": 0.9020240714141687, + "num_date": { + "value": 2009.7191780821918, + "confidence": [ + 2009.7191780821918, + 2009.7191780821918 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mansonia titillans" + }, + "year": { + "value": "2009", + "confidence": { + "2009": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000146", + "node_attrs": { + "div": 0.9020229214141687, + "num_date": { + "value": 2009.7183872209766, + "confidence": [ + 2009.7064551840224, + 2009.7191780821918 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999948279021 + }, + "entropy": 1.1500397535317313e-07 + }, + "year": { + "value": "2009", + "confidence": { + "2009": 0.9999988404231709 + }, + "entropy": 2.0532765787575312e-05 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999853857 + }, + "entropy": 3.772581856002475e-10 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "KC344452.1", + "node_attrs": { + "div": 0.9020240714141687, + "num_date": { + "value": 2009.7219178082191, + "confidence": [ + 2009.7219178082191, + 2009.7219178082191 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2009", + "confidence": { + "2009": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "KC344478.1", + "node_attrs": { + "div": 0.9020240714141687, + "num_date": { + "value": 2009.7191780821918, + "confidence": [ + 2009.7191780821918, + 2009.7191780821918 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex nigripalpus" + }, + "year": { + "value": "2009", + "confidence": { + "2009": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Tacoteno" + } + }, + "branch_attrs": { + "mutations": {} + } + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000154", + "node_attrs": { + "div": 0.9001276614141688, + "num_date": { + "value": 2008.3879269290635, + "confidence": [ + 2008.3195689622808, + 2008.4251845293636 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.999999960310415 + }, + "entropy": 8.019627584955713e-07 + }, + "year": { + "value": "2008", + "confidence": { + "2008": 0.9894638546738325, + "2010": 0.01009616779177468 + }, + "entropy": 0.06169411250252197 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999998907733 + }, + "entropy": 2.612632064290721e-09 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A2701G", + "C3677T", + "C4460T", + "A5980G", + "C7230T", + "T7475C", + "C8000T" + ], + "nsP2": [ + "K351R" + ], + "nsP4": [ + "K93R" + ] + }, + "labels": { + "aa": "nsP2: K351R; nsP4: K93R" + } + }, + "children": [ + { + "name": "NODE_0000155", + "node_attrs": { + "div": 0.9003091914141688, + "num_date": { + "value": 2008.4102371523911, + "confidence": [ + 2008.3624901830344, + 2008.4509728649987 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999424641627 + }, + "entropy": 1.1417599655399604e-06 + }, + "year": { + "value": "2008", + "confidence": { + "2008": 0.9898683654923195, + "2010": 0.009712192834792965 + }, + "entropy": 0.0597714359218808 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999998430416 + }, + "entropy": 3.6983055578173267e-09 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T4043C", + "C4979T" + ] + } + }, + "children": [ + { + "name": "KC344450.1", + "node_attrs": { + "div": 0.9016594114141687, + "num_date": { + "value": 2008.5204918032787, + "confidence": [ + 2008.5204918032787, + 2008.5204918032787 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2008", + "confidence": { + "2008": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C149T", + "T371C", + "C1367T", + "A1568G", + "C3230T", + "C3458T", + "T4019C", + "C5642T", + "A5753G", + "T6518C", + "C6722T", + "G7762A", + "C8458T", + "G9793A" + ] + } + } + }, + { + "name": "NODE_0000156", + "node_attrs": { + "div": 0.9016599914141687, + "num_date": { + "value": 2010.5557699886585, + "confidence": [ + 2010.4705048149247, + 2010.600197781872 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999428723411 + }, + "entropy": 1.1342365739371425e-06 + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9994520878858206 + }, + "entropy": 0.005743104348509574 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999998434511 + }, + "entropy": 3.689060885054469e-09 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A31T", + "C506T", + "A617G", + "T657C", + "A1375G", + "T2103C", + "T2624C", + "G3920A", + "C4170T", + "C4918T", + "A5201G", + "A6068G", + "A7154G", + "T9112C", + "G10705A", + "C11423T" + ], + "nsP1": [ + "N444S" + ], + "nsP3": [ + "P296L" + ] + }, + "labels": { + "aa": "nsP1: N444S; nsP3: P296L" + } + }, + "children": [ + { + "name": "KC344499.1", + "node_attrs": { + "div": 0.9019281514141687, + "num_date": { + "value": 2010.6534246575343, + "confidence": [ + 2010.6534246575343, + 2010.6534246575343 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito pool" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A8182G", + "C8356T", + "T8896C" + ] + } + } + }, + { + "name": "NODE_0000157", + "node_attrs": { + "div": 0.9019297414141687, + "num_date": { + "value": 2010.641146588281, + "confidence": [ + 2010.6213543873687, + 2010.6526017930585 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999999948 + }, + "entropy": -8.477955811089963e-13 + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999999999306339 + }, + "entropy": 1.7427664524006139e-09 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.0000389084184314e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T8722C", + "A8737G", + "A8902G" + ] + } + }, + "children": [ + { + "name": "KC344500.1", + "node_attrs": { + "div": 0.9020191314141687, + "num_date": { + "value": 2010.6534246575343, + "confidence": [ + 2010.6534246575343, + 2010.6534246575343 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito pool" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A10426G" + ] + } + } + }, + { + "name": "KC344491.1", + "node_attrs": { + "div": 0.9020191214141687, + "num_date": { + "value": 2010.6561643835616, + "confidence": [ + 2010.6561643835616, + 2010.6561643835616 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C8026T" + ] + } + } + }, + { + "name": "KC344470.1", + "node_attrs": { + "div": 0.9019308914141687, + "num_date": { + "value": 2010.6482690276966, + "confidence": [ + 2010.5821917808219, + 2010.664383561644 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "KC344501.1", + "node_attrs": { + "div": 0.9019308914141687, + "num_date": { + "value": 2010.6534246575343, + "confidence": [ + 2010.6534246575343, + 2010.6534246575343 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito pool" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + } + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000160", + "node_attrs": { + "div": 0.9007510914141688, + "num_date": { + "value": 2009.7142761716332, + "confidence": [ + 2009.5487585402605, + 2009.9474473362257 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999992282090369 + }, + "entropy": 1.3318884314680394e-05 + }, + "year": { + "value": "2010", + "confidence": { + "2008": 0.01720371859327147, + "2010": 0.9771573076991213 + }, + "entropy": 0.14265254052116189 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999979067269 + }, + "entropy": 4.392436809803324e-08 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A31C", + "T1430C", + "C2954A", + "T7229C", + "A8182G", + "C8356T", + "A9544G", + "C11423T" + ] + } + }, + "children": [ + { + "name": "KC344493.1", + "node_attrs": { + "div": 0.9045463114141687, + "num_date": { + "value": 2010.6479452054793, + "confidence": [ + 2010.6479452054793, + 2010.6479452054793 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito pool" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1964T", + "C2549T", + "C3230T", + "G5381A", + "G5382A", + "T5399C", + "T5425A", + "T5426A", + "T5441C", + "T5458C", + "G5471A", + "C5474T", + "G5580T", + "C5585T", + "C5603T", + "G5624A", + "A5702G", + "C5720T", + "C5735T", + "G5765A", + "C5792T", + "T5810C", + "T5831C", + "G5840A", + "C5870T", + "C5900A", + "T5963C", + "T5978C", + "G5980A", + "T5984G", + "T6011A", + "T6035C", + "G6055A", + "C6065T", + "C6074T", + "T6077C", + "A6131G", + "C6170T", + "A8548G", + "C8614T", + "C11036T", + "C11083T" + ], + "nsP3": [ + "G451R", + "I465K", + "V476A", + "A517S" + ], + "nsP4": [ + "R93K", + "R118K" + ] + }, + "labels": { + "aa": "nsP3: G451R, I465K, V476A, A517S; nsP4: R93K, R118K" + } + } + }, + { + "name": "NODE_0000161", + "node_attrs": { + "div": 0.9017477114141688, + "num_date": { + "value": 2010.6412542428516, + "confidence": [ + 2010.5950784236506, + 2010.650684931507 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999999769951 + }, + "entropy": 6.14761615669349e-10 + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999998681255888 + }, + "entropy": 2.4091605158652642e-06 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999762 + }, + "entropy": -3.182189291543845e-13 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C3026T", + "T3053C", + "G5207T", + "A5954G", + "G6039T", + "G6101A", + "G6176A", + "C7172T", + "T8896C", + "A9089G", + "T11357C" + ], + "E2": [ + "S176G" + ], + "nsP3": [ + "Q392H" + ], + "nsP4": [ + "A113S" + ] + }, + "labels": { + "aa": "E2: S176G; nsP3: Q392H; nsP4: A113S" + } + }, + "children": [ + { + "name": "KC344469.1", + "node_attrs": { + "div": 0.9018372714141688, + "num_date": { + "value": 2010.656644147872, + "confidence": [ + 2010.5821917808219, + 2010.664383561644 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T11423C" + ] + } + } + }, + { + "name": "KC344496.1", + "node_attrs": { + "div": 0.9017488614141688, + "num_date": { + "value": 2010.650684931507, + "confidence": [ + 2010.650684931507, + 2010.650684931507 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito pool" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000153", + "node_attrs": { + "div": 0.9017477114141688, + "num_date": { + "value": 2010.6460044402786, + "confidence": [ + 2010.6262585797058, + 2010.6524672101464 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999948279046 + }, + "entropy": 1.1500393275476612e-07 + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999990631784346 + }, + "entropy": 1.7292919146751027e-05 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999853854 + }, + "entropy": 3.772666730113525e-10 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "KC344492.1", + "node_attrs": { + "div": 0.9017477114141688, + "num_date": { + "value": 2010.6561643835616, + "confidence": [ + 2010.6561643835616, + 2010.6561643835616 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000158", + "node_attrs": { + "div": 0.9017477114141688, + "num_date": { + "value": 2010.651659363913, + "confidence": [ + 2010.6422430512, + 2010.6534246575343 + ] + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 0.9999999948279337 + }, + "entropy": 1.1500332887985117e-07 + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.999999063823193 + }, + "entropy": 1.7282562043306164e-05 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999853858 + }, + "entropy": 3.7725782232596737e-10 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "KC344497.1", + "node_attrs": { + "div": 0.9017477114141688, + "num_date": { + "value": 2010.6534246575343, + "confidence": [ + 2010.6534246575343, + 2010.6534246575343 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito pool" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "KC344498.1", + "node_attrs": { + "div": 0.9017477114141688, + "num_date": { + "value": 2010.6534246575343, + "confidence": [ + 2010.6534246575343, + 2010.6534246575343 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Mexico", + "confidence": { + "Mexico": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito pool" + }, + "year": { + "value": "2010", + "confidence": { + "2010": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IE_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Minatitlan" + } + }, + "branch_attrs": { + "mutations": {} + } + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000075", + "node_attrs": { + "div": 0.8472376314141687, + "num_date": { + "value": 1929.0448928313135, + "confidence": [ + 1927.910422642778, + 1929.7206285442464 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.062153587572950406, + "Panama": 0.10105611872968193, + "USA": 0.10372415900677566, + "Venezuela": 0.5021416499510708 + }, + "entropy": 1.8959661980384412 + }, + "year": { + "value": "1938", + "confidence": { + "1938": 0.022706382414647064, + "1971": 0.02217591681919939, + "1997": 0.022361908201633997, + "2017": 0.022102664040231448 + }, + "entropy": 3.8498055311737707 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9941928956430099, + "NAm": 0.005807104356990054 + }, + "entropy": 0.035689093090447585 + }, + "place_of_collection": { + "value": "Aragua" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A98G", + "A212C", + "T221C", + "A230T", + "A298G", + "T325A", + "G336A", + "C338T", + "G350A", + "G362A", + "A368T", + "G389A", + "A404C", + "A437G", + "T443G", + "A461G", + "A464G", + "C527T", + "A548G", + "C599T", + "C626A", + "T779G", + "C840T", + "G911A", + "C935T", + "G944T", + "C959T", + "G992A", + "G998A", + "G1004A", + "C1005T", + "T1007G", + "C1061T", + "A1073T", + "G1139T", + "A1193T", + "A1196G", + "T1229A", + "A1232G", + "A1259G", + "A1262G", + "G1268A", + "A1275C", + "C1280T", + "C1281A", + "G1289A", + "G1292C", + "G1310T", + "A1318G", + "A1319G", + "G1335A", + "G1337T", + "T1391A", + "A1406G", + "G1412C", + "C1415T", + "G1417A", + "G1445A", + "G1463A", + "C1479T", + "G1487C", + "A1499G", + "C1514T", + "A1518T", + "A1519G", + "A1545C", + "A1546G", + "G1547T", + "G1550A", + "T1586A", + "A1601G", + "G1634A", + "G1649C", + "A1652C", + "C1655A", + "C1667T", + "G1670T", + "G1673C", + "C1674T", + "C1679A", + "A1697C", + "A1739G", + "G1750A", + "C1761T", + "A1778T", + "G1787A", + "C1796A", + "T1823G", + "A1824C", + "G1826T", + "G1856A", + "G1871A", + "A1901T", + "G1910A", + "T1985G", + "G2003A", + "G2015T", + "G2018C", + "A2030G", + "A2062G", + "T2091A", + "A2120G", + "A2144C", + "A2174T", + "T2198G", + "C2204T", + "C2237T", + "T2276C", + "C2343A", + "G2363C", + "A2366G", + "A2384C", + "A2417T", + "C2423T", + "T2442C", + "G2444C", + "G2465A", + "C2534T", + "T2540C", + "A2543G", + "A2573C", + "T2579C", + "A2580C", + "A2594T", + "A2600T", + "G2609C", + "C2612A", + "T2624C", + "A2633G", + "C2642G", + "A2651G", + "A2678T", + "A2700C", + "T2705C", + "G2711C", + "G2729A", + "C2745T", + "T2768C", + "G2783A", + "G2795A", + "A2798G", + "A2807T", + "C2816G", + "A2826C", + "G2843A", + "C2849T", + "A2904C", + "G2906C", + "G2918A", + "C2921A", + "G2930C", + "G2936A", + "A2990G", + "A3068G", + "A3092T", + "C3116A", + "A3134T", + "G3137A", + "G3140A", + "G3149T", + "A3162G", + "G3165A", + "A3166C", + "G3173A", + "C3195T", + "C3213A", + "G3227C", + "A3239C", + "G3245T", + "C3293T", + "A3299C", + "A3305G", + "C3326T", + "A3339C", + "G3341T", + "A3347C", + "G3380T", + "G3452T", + "T3461A", + "A3483C", + "C3484T", + "C3493A", + "C3503A", + "C3505A", + "C3506G", + "G3519T", + "T3524C", + "A3570T", + "A3573T", + "A3574C", + "A3576G", + "G3587A", + "T3605A", + "A3608C", + "A3610G", + "A3638G", + "T3677A", + "G3684A", + "A3698C", + "T3761C", + "A3770T", + "T3809A", + "G3855A", + "T3857A", + "T3860G", + "G3884A", + "G3897T", + "T3898C", + "G3905T", + "G3908A", + "C3959G", + "C3980A", + "A4010C", + "A4076C", + "C4091A", + "A4118T", + "A4235C", + "G4259T", + "G4268T", + "G4295T", + "T4304C", + "T4322C", + "G4336A", + "C4340A", + "G4343A", + "C4356T", + "G4374T", + "A4379G", + "A4389C", + "T4396C", + "G4397C", + "A4406G", + "C4413T", + "A4424T", + "A4436T", + "G4448A", + "A4463G", + "A4484T", + "G4487C", + "T4495C", + "A4499G", + "C4502T", + "G4514A", + "A4517G", + "T4529C", + "C4532A", + "A4538C", + "C4547A", + "A4550G", + "G4551A", + "T4574G", + "A4610G", + "G4676C", + "G4685A", + "C4697T", + "A4709C", + "A4710G", + "A4718G", + "T4724C", + "T4740A", + "G4751C", + "G4754A", + "T4778G", + "G4793A", + "A4799G", + "A4817T", + "T4820C", + "C4860A", + "C4931T", + "T4955C", + "A4958G", + "C4967G", + "T4976G", + "A4996C", + "T5009A", + "A5012G", + "T5021C", + "C5023T", + "A5024G", + "G5031C", + "C5036G", + "C5038T", + "G5070C", + "C5095A", + "A5097C", + "C5113T", + "G5119A", + "A5120G", + "G5124A", + "A5125G", + "G5133A", + "A5141G", + "A5142C", + "C5146T", + "G5148A", + "A5196C", + "A5207G", + "A5212T", + "A5228C", + "G5231T", + "A5273T", + "C5303A", + "C5312T", + "G5323A", + "T5324G", + "A5336G", + "A5343G", + "T5349G", + "A5360G", + "G5371A", + "G5378A", + "T5385A", + "A5400C", + "T5405G", + "C5423A", + "T5426A", + "A5438T", + "G5442C", + "T5443A", + "G5447C", + "A5448G", + "A5449C", + "A5450T", + "C5460A", + "G5465A", + "C5477A", + "T5478C", + "G5562C", + "G5593T", + "T5601A", + "T5615C", + "C5633T", + "C5642T", + "C5669A", + "G5768A", + "C5781T", + "A5841T", + "A5849C", + "A5861G", + "G5864A", + "G5876T", + "G5885A", + "C5901A", + "A5931G", + "A5935G", + "A5937C", + "A5939T", + "T5957G", + "A5969G", + "G5981A", + "T6000C", + "G6024T", + "A6026T", + "A6038T", + "G6041C", + "T6050C", + "A6056G", + "A6065G", + "A6071C", + "T6077C", + "T6079C", + "G6080C", + "G6081A", + "C6084T", + "G6089A", + "A6104T", + "A6125T", + "G6155T", + "A6164T", + "G6228T", + "C6245A", + "G6284C", + "T6290C", + "A6293C", + "C6359G", + "A6421T", + "C6422T", + "T6434C", + "T6437C", + "A6440G", + "T6441C", + "G6443T", + "T6461A", + "G6488A", + "A6494T", + "G6503T", + "C6531T", + "C6545A", + "A6572G", + "A6575G", + "C6581G", + "G6584A", + "A6650G", + "T6651C", + "G6653A", + "T6656A", + "G6674A", + "C6693A", + "C6695G", + "A6707G", + "G6716T", + "T6719A", + "T6746G", + "T6770C", + "G6800T", + "G6806A", + "C6824T", + "G6845C", + "G6857C", + "A6860G", + "C6861T", + "C6869T", + "C6891G", + "A6920T", + "T6941A", + "G7001C", + "C7004A", + "C7053A", + "G7055A", + "G7064A", + "A7068G", + "A7069G", + "C7070A", + "C7131T", + "C7139A", + "C7163T", + "T7181A", + "A7187T", + "C7193G", + "C7220A", + "C7230T", + "A7256G", + "T7259C", + "G7277A", + "A7283G", + "A7286G", + "A7304T", + "G7313A", + "C7338A", + "C7341A", + "A7343G", + "G7355A", + "G7362A", + "C7376A", + "T7386C", + "G7412A", + "C7416A", + "C7433A", + "T7445A", + "A7446G", + "C7448T", + "C7469T", + "G7479A", + "G7481A", + "C7514T", + "G7539A", + "G7544A", + "A7561G", + "T7570G", + "T7605A", + "T7618C", + "T7627G", + "A7633G", + "C7657T", + "G7681A", + "G7685A", + "G7690C", + "T7726C", + "A7757C", + "A7758C", + "A7764G", + "T7768G", + "C7778A", + "G7781C", + "T7783A", + "T7786A", + "A7790G", + "A7791G", + "C7793G", + "A7794G", + "G7795C", + "A7796C", + "T7798A", + "T7813G", + "A7816C", + "A7832G", + "A7833C", + "G7834T", + "A7849T", + "C7850A", + "C7851A", + "C7852T", + "A7855G", + "A7860C", + "C7870A", + "A7882G", + "G7883A", + "T7888C", + "A7912C", + "C7960A", + "A7966G", + "G7975C", + "T7978C", + "T7996G", + "A8008G", + "G8044T", + "C8053G", + "C8062G", + "G8068A", + "G8077A", + "G8086T", + "G8109A", + "C8116G", + "A8119C", + "G8185A", + "A8198C", + "G8200T", + "A8224G", + "C8245A", + "A8251T", + "A8263G", + "A8269G", + "G8320T", + "C8323A", + "A8344G", + "G8347A", + "C8356G", + "T8389A", + "C8422G", + "T8435G", + "C8461A", + "A8500T", + "T8535C", + "G8536T", + "C8537G", + "G8539T", + "A8542G", + "A8548C", + "C8551A", + "A8559G", + "G8569C", + "C8590T", + "A8599G", + "G8605T", + "G8617A", + "C8653A", + "G8673A", + "A8698T", + "C8699A", + "A8713C", + "A8725C", + "T8726C", + "A8734C", + "A8740C", + "T8776C", + "A8779G", + "A8824T", + "A8842G", + "A8884G", + "C8935G", + "C8941G", + "G8965A", + "G8977C", + "A9007G", + "C9011G", + "C9019A", + "G9022C", + "T9028A", + "C9031T", + "A9076C", + "C9079A", + "C9093G", + "C9098G", + "A9104T", + "T9118A", + "A9123C", + "C9139T", + "A9144C", + "T9150C", + "A9166G", + "A9213T", + "C9231A", + "A9232G", + "C9234A", + "G9244A", + "C9250T", + "A9309C", + "G9334C", + "A9347G", + "A9352C", + "C9354G", + "G9355C", + "A9370T", + "C9376A", + "C9385T", + "T9415A", + "G9463T", + "A9465C", + "G9468A", + "A9469T", + "A9472G", + "A9475T", + "G9476C", + "A9514G", + "G9532A", + "T9538G", + "A9544G", + "C9577T", + "A9598C", + "T9631A", + "C9640T", + "C9655T", + "C9673T", + "A9694T", + "G9700C", + "A9701G", + "G9739C", + "C9740A", + "G9754A", + "A9766G", + "G9769A", + "A9775T", + "C9782A", + "T9790A", + "T9791C", + "A9802T", + "G9808T", + "A9817C", + "A9827C", + "A9847G", + "C9851T", + "C9869A", + "G9877A", + "G9940C", + "A9943G", + "T9952C", + "T10032C", + "C10040T", + "G10081C", + "C10084T", + "T10099A", + "C10102A", + "A10105G", + "G10106A", + "T10117A", + "A10139G", + "A10144C", + "G10156A", + "C10174A", + "A10193T", + "G10252T", + "G10306A", + "G10309C", + "G10324A", + "G10343C", + "C10345T", + "T10348G", + "C10358G", + "G10360A", + "C10387G", + "C10393G", + "G10399C", + "A10427G", + "C10428T", + "C10429G", + "G10430A", + "A10432C", + "G10433A", + "T10434C", + "T10462G", + "G10483A", + "T10495G", + "G10498T", + "C10507T", + "C10564T", + "A10570T", + "A10579G", + "T10588A", + "G10589C", + "T10609A", + "G10613T", + "A10622G", + "C10627A", + "G10651C", + "C10678A", + "G10696A", + "C10702T", + "C10738T", + "C10742G", + "A10744T", + "G10756A", + "C10759T", + "G10774A", + "C10798T", + "T10804C", + "C10813T", + "G10819A", + "A10822G", + "C10856T", + "G10888T", + "C10894G", + "T10990C", + "C11005G", + "G11008T", + "G11017A", + "G11062T", + "C11077A", + "C11179T", + "G11188A", + "A11239G", + "C11273T", + "T11279C", + "A11328G", + "A11359T", + "A11372G", + "A11380T", + "A11396T", + "A11416T", + "T11419G" + ], + "6k": [ + "H13N" + ], + "CP": [ + "F15Y", + "A42T", + "K66P", + "K68R", + "D69E", + "Q73K", + "D74Q", + "N75K", + "N77G", + "Q78G", + "N79Q", + "N84K", + "K85N", + "K91A", + "P97N", + "K100T", + "A108T", + "D133E", + "S183N" + ], + "E1": [ + "V11A", + "P14S", + "V36I", + "I47V", + "T65S", + "V115L", + "Q120E", + "T143V", + "A144T", + "V145T", + "H196Q", + "A197P", + "A205S", + "I208V", + "P248A", + "M354I" + ], + "E2": [ + "R37K", + "P150A", + "H152Q", + "T177S", + "L179V", + "M181L", + "H187P", + "K194T", + "V196A", + "Y217F", + "T223K", + "A224E", + "D249A", + "T262A", + "E263D", + "A264G", + "D301A", + "G302D", + "D305H", + "I380V", + "F410L" + ], + "E3": [ + "S17A", + "V50A", + "L51V", + "K58R" + ], + "nsP1": [ + "E56D", + "K85R", + "F94Y", + "A98T", + "I133M", + "K425R", + "V431I", + "S458N", + "P479S", + "N492C", + "K501R" + ], + "nsP2": [ + "R34K", + "K138R", + "S148T", + "K351Q", + "K505E", + "E506T", + "S604R", + "T612L", + "T615N", + "P619Q", + "A624S", + "M641L", + "N642S", + "I643V", + "E653D", + "Q654R", + "V679I", + "V736I", + "V750S" + ], + "nsP3": [ + "R102K", + "A115S", + "M122T", + "V155A", + "E169D", + "A174T", + "M218I", + "I227V", + "L237M", + "H312Q", + "E322A", + "A331V", + "A334P", + "A336V", + "E347Q", + "P355Q", + "T356P", + "A361V", + "G363E", + "E365R", + "A368T", + "T371P", + "T372I", + "D373N", + "T389P", + "Q394L", + "E399D", + "F424L", + "G431E", + "I435M", + "K438E", + "S440A", + "C447Y", + "L452M", + "V471H", + "K473A", + "V511L", + "G521V", + "S524T" + ], + "nsP4": [ + "I47L", + "T77A", + "K78R", + "A108S", + "V126A", + "V127M", + "A176S", + "Y240F", + "P397A", + "N456G", + "A554T", + "F562L", + "I582V", + "E593K" + ] + }, + "labels": { + "aa": "6k: H13N; CP: F15Y, A42T, K66P, K68R, D69E, Q73K, D74Q, N75K, N77G, Q78G, N79Q, N84K, K85N, K91A, P97N, K100T, A108T, D133E, S183N; E1: V11A, P14S, V36I, I47V, T65S, V115L, Q120E, T143V, A144T, V145T, H196Q, A197P, A205S, I208V, P248A, M354I; E2: R37K, P150A, H152Q, T177S, L179V, M181L, H187P, K194T, V196A, Y217F, T223K, A224E, D249A, T262A, E263D, A264G, D301A, G302D, D305H, I380V, F410L; E3: S17A, V50A, L51V, K58R; nsP1: E56D, K85R, F94Y, A98T, I133M, K425R, V431I, S458N, P479S, N492C, K501R; nsP2: R34K, K138R, S148T, K351Q, K505E, E506T, S604R, T612L, T615N, P619Q, A624S, M641L, N642S, I643V, E653D, Q654R, V679I, V736I, V750S; nsP3: R102K, A115S, M122T, V155A, E169D, A174T, M218I, I227V, L237M, H312Q, E322A, A331V, A334P, A336V, E347Q, P355Q, T356P, A361V, G363E, E365R, A368T, T371P, T372I, D373N, T389P, Q394L, E399D, F424L, G431E, I435M, K438E, S440A, C447Y, L452M, V471H, K473A, V511L, G521V, S524T; nsP4: I47L, T77A, K78R, A108S, V126A, V127M, A176S, Y240F, P397A, N456G, A554T, F562L, I582V, E593K" + } + }, + "children": [ + { + "name": "NODE_0000076", + "node_attrs": { + "div": 0.9438475014141687, + "num_date": { + "value": 1962.5070658478771, + "confidence": [ + 1962.2696241757742, + 1963.169450307132 + ] + }, + "country": { + "value": "USA", + "confidence": { + "USA": 0.9998061013833393 + }, + "entropy": 0.0023599863047332487 + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.6193552069007447, + "1964": 0.009021210864122433, + "1967": 0.008047213950554685, + "2013": 0.16533758337242163 + }, + "entropy": 1.7403653283239522 + }, + "region": { + "value": "NAm", + "confidence": { + "NAm": 0.9999739474667809 + }, + "entropy": 0.0003010469850552703 + }, + "place_of_collection": { + "value": "Everglades" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A31C", + "T32C", + "C35A", + "A38G", + "C80T", + "A83T", + "C131T", + "A191G", + "T242C", + "T266A", + "G275A", + "T290C", + "T302C", + "A308G", + "T311C", + "T332C", + "A335T", + "T356C", + "G374A", + "T378C", + "T422G", + "T440C", + "A441G", + "C458T", + "A482G", + "T491A", + "C560T", + "C575T", + "T578C", + "C584T", + "T611A", + "A623T", + "A626G", + "C638T", + "T657C", + "A659C", + "T668A", + "C671T", + "T710C", + "T740C", + "C755T", + "G779A", + "C785T", + "C807T", + "G811A", + "T872C", + "T878A", + "A926T", + "C986T", + "G1034A", + "C1037T", + "G1040A", + "G1046A", + "C1054T", + "G1109T", + "A1112G", + "C1116T", + "C1119T", + "G1136A", + "T1139C", + "T1175C", + "A1214G", + "G1241A", + "A1271T", + "A1293T", + "G1298A", + "T1310C", + "G1315A", + "A1331G", + "C1346T", + "G1349C", + "C1361T", + "C1364T", + "C1367T", + "C1376T", + "C1379T", + "C1388T", + "C1394T", + "A1421G", + "C1441A", + "C1442T", + "A1454G", + "T1490C", + "C1502T", + "A1503G", + "A1508C", + "A1523G", + "T1543C", + "C1544T", + "T1547C", + "C1553A", + "C1567T", + "A1586G", + "T1589C", + "T1592C", + "C1608T", + "T1626C", + "A1637G", + "T1643C", + "G1646A", + "T1667A", + "G1676A", + "C1688T", + "C1706T", + "G1709A", + "C1721T", + "T1733C", + "A1745G", + "T1778C", + "C1779T", + "C1781G", + "G1799A", + "A1820G", + "T1826C", + "A1832G", + "C1841G", + "C1844T", + "G1859C", + "C1883T", + "C1892T", + "C1961T", + "A1979G", + "A1982G", + "C1986T", + "C1991T", + "A2011G", + "G2016A", + "C2045T", + "C2054T", + "G2063A", + "A2077G", + "G2105A", + "A2106G", + "A2108C", + "T2126G", + "C2129A", + "C2154T", + "C2171T", + "T2177C", + "A2189G", + "C2222T", + "G2225A", + "C2234T", + "C2243T", + "C2249T", + "A2255G", + "G2270A", + "A2282G", + "T2291C", + "G2292A", + "C2328T", + "G2330A", + "T2348C", + "A2357G", + "A2387T", + "C2394T", + "T2402C", + "A2408G", + "T2411A", + "T2417C", + "T2420C", + "T2432C", + "C2444T", + "A2457C", + "T2462A", + "A2471T", + "G2474A", + "C2480T", + "A2489G", + "C2501T", + "C2510T", + "C2519T", + "T2531C", + "C2537T", + "C2558T", + "C2561T", + "T2600C", + "G2603T", + "C2615T", + "A2630G", + "A2639G", + "G2645A", + "T2666C", + "T2672A", + "T2687C", + "A2704G", + "C2711T", + "T2714C", + "C2717T", + "G2738A", + "C2759T", + "T2786A", + "C2799T", + "C2804A", + "T2807C", + "T2813C", + "C2850T", + "G2888A", + "A2921G", + "C2927T", + "A2936C", + "C2949T", + "C2957T", + "G2960A", + "C2963T", + "C2975T", + "G3000A", + "C3017T", + "C3074T", + "C3101T", + "C3113T", + "C3125T", + "C3131T", + "T3134C", + "A3145G", + "T3156C", + "T3158C", + "C3170T", + "G3188A", + "A3194G", + "C3204T", + "G3215A", + "A3254G", + "G3261A", + "T3275C", + "T3281C", + "C3311T", + "C3321T", + "C3338T", + "T3341C", + "G3344A", + "C3347T", + "C3383T", + "T3413C", + "G3419A", + "T3425C", + "T3431C", + "C3444T", + "C3458T", + "C3465T", + "T3491C", + "C3500T", + "A3503G", + "T3518G", + "C3527T", + "A3545G", + "T3548C", + "G3566A", + "G3569A", + "C3578T", + "A3588T", + "T3614C", + "T3641C", + "A3644G", + "A3653T", + "T3683C", + "C3710T", + "C3716T", + "T3728C", + "G3746A", + "A3794T", + "C3821T", + "G3830A", + "A3839G", + "T3854C", + "C3861A", + "A3902G", + "G3938A", + "A3949G", + "T3956C", + "T3977C", + "T3983G", + "C3986A", + "C3992T", + "C3998T", + "A4028G", + "A4040G", + "T4046C", + "A4055C", + "T4061C", + "A4091G", + "T4100C", + "T4118C", + "T4124C", + "G4148A", + "C4154T", + "A4160G", + "G4187A", + "A4193G", + "C4200T", + "C4205T", + "T4211C", + "G4215A", + "T4223C", + "C4226T", + "T4229C", + "T4232C", + "C4235T", + "T4259C", + "A4265G", + "A4289G", + "C4307T", + "T4310A", + "T4325C", + "A4340G", + "G4341A", + "A4343T", + "G4346A", + "C4361T", + "A4384G", + "C4392T", + "A4394G", + "A4400G", + "T4404C", + "C4409T", + "T4424C", + "C4430T", + "A4461C", + "T4484C", + "A4493G", + "A4511G", + "C4535T", + "C4538T", + "C4569T", + "G4571A", + "G4589A", + "T4595C", + "T4596C", + "G4598A", + "T4601C", + "T4628C", + "C4640T", + "T4646C", + "C4658A", + "C4667T", + "G4679A", + "T4682C", + "A4688T", + "T4712G", + "C4714T", + "G4721A", + "A4736G", + "C4748T", + "C4751T", + "G4778A", + "A4802G", + "C4808T", + "C4838T", + "T4847A", + "A4862G", + "A4865G", + "A4883G", + "A4901G", + "A4910G", + "C4913T", + "A4919G", + "T4920C", + "C4937T", + "T4943C", + "C4979T", + "G4997A", + "A5009G", + "C5062T", + "A5076G", + "A5078G", + "G5081A", + "G5082A", + "C5086A", + "C5088A", + "C5089T", + "T5090G", + "A5096G", + "C5103A", + "G5104A", + "T5105C", + "T5107G", + "A5108G", + "C5111T", + "G5115A", + "A5116G", + "T5117C", + "G5126T", + "C5134T", + "G5144A", + "A5145G", + "C5150T", + "G5159A", + "A5165G", + "A5170G", + "T5182C", + "G5198T", + "A5203G", + "C5204G", + "A5216G", + "C5219T", + "A5225G", + "T5231C", + "G5235A", + "T5246C", + "C5261T", + "C5282T", + "T5291C", + "C5297T", + "C5318T", + "C5319T", + "C5342T", + "T5352C", + "G5355A", + "A5357G", + "A5364G", + "T5374C", + "G5381A", + "T5411A", + "T5417C", + "C5418A", + "G5424A", + "C5435A", + "T5438C", + "T5444C", + "C5447T", + "G5453A", + "C5464T", + "C5467A", + "G5487T", + "C5488T", + "C5489T", + "G5491A", + "C5492T", + "T5501C", + "A5515G", + "G5524A", + "C5525T", + "T5539C", + "T5540C", + "G5552A", + "C5562T", + "A5565G", + "C5566T", + "C5576A", + "T5579A", + "T5582A", + "C5585T", + "T5589C", + "T5593C", + "A5600G", + "C5612T", + "G5621A", + "A5630G", + "T5638A", + "C5645T", + "G5651A", + "T5690C", + "C5708A", + "A5741G", + "G5780A", + "A5831G", + "A5834G", + "T5879C", + "C5888T", + "G5905A", + "C5924T", + "A5954G", + "T5960C", + "A5978G", + "G5987A", + "C5999T", + "T6008C", + "T6014C", + "A6023G", + "T6026C", + "C6035T", + "C6053T", + "A6068G", + "C6095T", + "T6104C", + "T6110C", + "C6116T", + "C6158T", + "C6161T", + "T6167C", + "C6170T", + "T6174C", + "C6185T", + "C6212T", + "A6224G", + "C6230T", + "T6233C", + "A6251G", + "G6260A", + "A6263C", + "A6266G", + "C6293T", + "A6299T", + "A6308T", + "A6311G", + "A6314G", + "A6350T", + "T6362C", + "C6365T", + "T6368C", + "T6392C", + "T6401C", + "T6404C", + "G6414A", + "A6428G", + "C6437A", + "A6452G", + "G6459A", + "C6467T", + "A6488T", + "T6500C", + "T6521C", + "C6539T", + "A6593C", + "C6620G", + "C6635T", + "T6641G", + "C6644A", + "G6650C", + "C6666T", + "A6683C", + "G6695A", + "T6704C", + "C6711T", + "C6725T", + "G6746A", + "C6773A", + "T6800C", + "C6801T", + "C6815T", + "G6836A", + "T6861A", + "C6878T", + "T6884C", + "C6890T", + "G6917A", + "C6938T", + "T6953C", + "T6959C", + "A6986G", + "A6992G", + "C7001T", + "A7019C", + "C7043T", + "A7046G", + "C7067T", + "T7076C", + "T7079C", + "C7088T", + "T7097C", + "G7109A", + "A7130G", + "T7158C", + "C7172T", + "C7178T", + "T7187C", + "G7190A", + "C7196A", + "C7214T", + "G7244A", + "C7284T", + "T7304C", + "C7334T", + "A7340G", + "C7395T", + "G7403A", + "A7424G", + "C7439T", + "C7442T", + "C7454T", + "A7458G", + "T7460A", + "A7544T", + "A7551G", + "G7570A", + "G7615A", + "C7636T", + "A7646C", + "C7654T", + "G7672A", + "C7687T", + "G7708T", + "C7711T", + "C7720T", + "A7725G", + "G7729A", + "A7744C", + "C7757T", + "C7771G", + "G7774T", + "G7799A", + "G7807A", + "C7816T", + "C7817G", + "A7840T", + "C7854T", + "G7876A", + "G7903A", + "G7909A", + "A7924G", + "T7969C", + "T7981G", + "C7984T", + "C7990A", + "A7993T", + "A8002G", + "C8005T", + "G8029A", + "T8044C", + "T8056C", + "C8074T", + "A8131G", + "T8158C", + "C8161T", + "C8164T", + "A8179G", + "A8191G", + "T8194C", + "T8200C", + "G8209A", + "A8212C", + "A8214G", + "T8221C", + "A8229G", + "G8287A", + "T8308C", + "C8326T", + "T8350C", + "C8353A", + "C8390T", + "C8407T", + "C8416A", + "T8434C", + "A8443G", + "A8446G", + "C8455T", + "C8458T", + "A8461G", + "T8476G", + "T8477C", + "T8494C", + "C8497T", + "G8509A", + "G8521A", + "C8525T", + "G8528A", + "T8539C", + "A8541C", + "G8554A", + "A8596G", + "T8605C", + "C8608T", + "A8621G", + "C8623T", + "C8641T", + "C8680T", + "T8731C", + "C8743T", + "G8750A", + "C8758A", + "G8768A", + "C8774T", + "C8782T", + "C8815T", + "A8821G", + "C8827T", + "T8833C", + "C8860T", + "C8861T", + "T8866A", + "T8869G", + "C8875T", + "C8887T", + "C8896T", + "T8905C", + "A8917G", + "A8947G", + "C8968T", + "C8977T", + "C8989G", + "C8998T", + "A9010G", + "C9016T", + "T9034C", + "G9040A", + "T9055C", + "C9091T", + "T9094C", + "C9109T", + "G9110A", + "A9113G", + "C9122T", + "G9142A", + "C9148T", + "C9151T", + "G9154A", + "G9170A", + "A9180C", + "C9196T", + "C9199T", + "C9201A", + "G9203A", + "A9208G", + "A9242C", + "A9253C", + "C9265T", + "T9280C", + "G9283A", + "C9310T", + "C9326T", + "G9328A", + "A9337G", + "C9340T", + "C9352T", + "C9355T", + "C9371T", + "A9376G", + "T9385G", + "A9409G", + "C9422T", + "A9434T", + "C9446T", + "C9454T", + "C9458G", + "T9475C", + "T9499C", + "A9505G", + "G9506T", + "A9531C", + "T9547C", + "A9595C", + "C9598T", + "T9604C", + "G9616A", + "A9632G", + "C9633T", + "C9643T", + "C9646T", + "C9652T", + "C9661T", + "C9664T", + "C9668A", + "T9669C", + "C9688T", + "A9697T", + "G9707A", + "C9718T", + "T9730G", + "C9733T", + "A9735G", + "T9744C", + "T9745C", + "C9752T", + "C9764A", + "T9775C", + "G9783A", + "C9820T", + "A9821T", + "G9829A", + "C9838T", + "C9874T", + "C9886T", + "T9891C", + "T9907C", + "C9908T", + "G9919A", + "C9922A", + "G9947A", + "C9958T", + "C10000A", + "C10072T", + "A10102G", + "T10120A", + "C10150T", + "A10174G", + "G10175A", + "C10180T", + "A10183G", + "C10189T", + "T10207C", + "A10210G", + "T10213C", + "A10228G", + "C10234T", + "C10243T", + "A10244G", + "A10246G", + "C10261T", + "C10291T", + "T10294C", + "G10307A", + "C10336G", + "C10339T", + "T10357A", + "A10359C", + "C10381T", + "T10394C", + "C10399T", + "G10411A", + "C10435T", + "T10471C", + "T10481C", + "A10504G", + "C10531T", + "T10540C", + "T10558C", + "T10570C", + "A10588G", + "A10591G", + "A10603G", + "T10613C", + "C10614T", + "A10621C", + "C10624T", + "C10655T", + "A10667C", + "A10669G", + "C10672A", + "A10708G", + "A10711C", + "A10747T", + "A10750C", + "T10751C", + "C10762T", + "T10786C", + "A10807G", + "C10810T", + "C10849T", + "T10888C", + "C10930T", + "G10951A", + "C10960T", + "G10972A", + "C10984T", + "G11027T", + "C11036T", + "C11055T", + "T11080C", + "C11083T", + "A11113G", + "A11118T", + "T11134A", + "C11173A", + "C11182T", + "T11194C", + "A11197G", + "A11230G", + "C11236T", + "C11237T", + "C11272T", + "T11287C", + "A11288C", + "C11331T", + "A11347G", + "T11357G", + "C11366T", + "G11419A", + "C11423T" + ], + "6k": [ + "I20T", + "V39M" + ], + "CP": [ + "D55G", + "P66S", + "G80R", + "Q86E", + "P98L", + "K218R", + "K223R" + ], + "E1": [ + "A59T", + "T82A", + "V103I", + "D112E", + "E120A", + "F132L", + "S205L", + "A343S", + "A352V", + "Y373F", + "I430L" + ], + "E2": [ + "I20V", + "G63S", + "D69N", + "H71Y", + "G183S", + "S184G", + "P187S", + "G203S", + "K206T", + "T213K", + "A214T", + "N291Y", + "Q299E", + "A315S", + "E323A", + "T357V", + "L369T", + "V382I", + "F389L", + "K391R", + "V394A", + "R407K", + "T420S" + ], + "E3": [ + "E48K", + "K52T" + ], + "nsP1": [ + "M133V", + "R256K", + "T337I", + "M417L", + "R424K", + "T466N", + "I487V", + "Q488H", + "V500A", + "A508V" + ], + "nsP2": [ + "K121R", + "V123I", + "K143R", + "T153A", + "A215T", + "D352G", + "A451T", + "N499S", + "Y503H", + "V538I", + "T647S", + "K767R" + ], + "nsP3": [ + "A62T", + "V104I", + "K118R", + "A228V", + "A344V", + "T349A", + "G351R", + "A352E", + "P353M", + "R358N", + "I359R", + "D362S", + "R365S", + "T368M", + "I372V", + "D380G", + "L384S", + "H391R", + "G402R", + "S441P", + "A442T", + "N445D", + "F448S", + "V465I", + "N468K", + "T478I", + "P479Q", + "A486F", + "S487N", + "N495S", + "G498D", + "I503T", + "T512V", + "S520P", + "V521A", + "V536E" + ], + "nsP4": [ + "R68K", + "E238K", + "V253I", + "L387M", + "T586A" + ] + }, + "labels": { + "aa": "6k: I20T, V39M; CP: D55G, P66S, G80R, Q86E, P98L, K218R, K223R; E1: A59T, T82A, V103I, D112E, E120A, F132L, S205L, A343S, A352V, Y373F, I430L; E2: I20V, G63S, D69N, H71Y, G183S, S184G, P187S, G203S, K206T, T213K, A214T, N291Y, Q299E, A315S, E323A, T357V, L369T, V382I, F389L, K391R, V394A, R407K, T420S; E3: E48K, K52T; nsP1: M133V, R256K, T337I, M417L, R424K, T466N, I487V, Q488H, V500A, A508V; nsP2: K121R, V123I, K143R, T153A, A215T, D352G, A451T, N499S, Y503H, V538I, T647S, K767R; nsP3: A62T, V104I, K118R, A228V, A344V, T349A, G351R, A352E, P353M, R358N, I359R, D362S, R365S, T368M, I372V, D380G, L384S, H391R, G402R, S441P, A442T, N445D, F448S, V465I, N468K, T478I, P479Q, A486F, S487N, N495S, G498D, I503T, T512V, S520P, V521A, V536E; nsP4: R68K, E238K, V253I, L387M, T586A" + } + }, + "children": [ + { + "name": "KR260737.1", + "node_attrs": { + "div": 0.9540599314141688, + "num_date": { + "value": 1964.635126914251, + "confidence": [ + 1964.126615375111, + 1965.3124730968025 + ] + }, + "author": { + "author": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", + "value": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." + }, + "country": { + "value": "USA", + "confidence": { + "USA": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "2013", + "confidence": { + "2013": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "II_EVEV" + }, + "region": { + "value": "NAm", + "confidence": { + "NAm": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Everglades" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T77C", + "A362C", + "C605T", + "A863G", + "C1043T", + "C1632T", + "C1931T", + "C2036T", + "C2147T", + "A2162G", + "G2396A", + "G2651A", + "A2772G", + "C2922T", + "A2969T", + "T3149C", + "T3371C", + "T3428C", + "G3434A", + "G3518A", + "T3593C", + "T3743C", + "C3803T", + "C3845T", + "C4037T", + "T4356C", + "T4445C", + "C4495T", + "T4694C", + "C4700T", + "G4736C", + "T4889C", + "T4931C", + "A4988G", + "A5133G", + "G5141A", + "C5153T", + "C5200T", + "C5224T", + "C5228T", + "G5326A", + "G5348T", + "C5352G", + "A5385G", + "A5514G", + "G5519A", + "G5549T", + "A5621T", + "G5648A", + "G5756A", + "G5765A", + "T6029C", + "G6153A", + "T6185A", + "C6263G", + "C6398T", + "T6455C", + "T6470C", + "A6602G", + "A6698G", + "T6797C", + "C6926T", + "C7028T", + "A7058G", + "A7202G", + "T7217C", + "T7347C", + "C7577T", + "A7648G", + "T7792C", + "G7822A", + "G7939A", + "A7967G", + "C7978T", + "G8020A", + "T8080C", + "A8185G", + "T8538A", + "C8569T", + "T8590C", + "T8767C", + "A8800G", + "T9115C", + "A9178G", + "C9241T", + "T9250C", + "G9350A", + "C9397T", + "T9466C", + "C9523T", + "G9805A", + "G9815A", + "A10099G", + "A10159G", + "C10347T", + "C10375T", + "A10384G", + "T10492C", + "C10606T", + "A11020G", + "C11095T", + "T11122C", + "A11322G" + ], + "CP": [ + "P6S", + "I136V" + ], + "E1": [ + "A116V", + "H441R" + ], + "E2": [ + "D263N", + "A418T" + ], + "E3": [ + "V51D" + ], + "nsP1": [ + "E106D" + ], + "nsP2": [ + "I375V" + ], + "nsP3": [ + "A155V", + "M368V", + "T390I", + "A398V", + "G432E", + "P441A", + "M452V", + "S495G", + "E506D" + ], + "nsP4": [ + "V151I" + ] + }, + "labels": { + "aa": "CP: P6S, I136V; E1: A116V, H441R; E2: D263N, A418T; E3: V51D; nsP1: E106D; nsP2: I375V; nsP3: A155V, M368V, T390I, A398V, G432E, P441A, M452V, S495G, E506D; nsP4: V151I" + } + } + }, + { + "name": "NODE_0000077", + "node_attrs": { + "div": 0.9464864514141688, + "num_date": { + "value": 1962.9882351031422, + "confidence": [ + 1962.9260736718545, + 1963.6895960470908 + ] + }, + "country": { + "value": "USA", + "confidence": { + "USA": 0.999932244933703 + }, + "entropy": 0.0008978487160990841 + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.873075079052159, + "1964": 0.003631234065898948, + "1967": 0.0032529841948940826, + "2013": 0.046229560021782724 + }, + "entropy": 0.7688455162839902 + }, + "region": { + "value": "NAm", + "confidence": { + "NAm": 0.9999922483864103 + }, + "entropy": 9.896954350632018e-05 + }, + "place_of_collection": { + "value": "Everglades" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G716T", + "T1847C", + "C2252T", + "C2564T", + "A2629G", + "C2930T", + "C2933T", + "C2964T", + "C3502T", + "C3734T", + "G4070A", + "T4145C", + "C5018T", + "C5192T", + "A5253G", + "T5273C", + "C5398T", + "T5876C", + "A6128G", + "G6632A", + "T6665C", + "T6728C", + "C6870T", + "C7506T", + "T8188C", + "C8239T", + "T8744C", + "G9013A", + "C9117T", + "C9175T", + "T9469C", + "G9568A", + "A9698G", + "T9856C", + "C9868T", + "C10027T", + "C11170T" + ], + "E2": [ + "S185L", + "T379A" + ], + "nsP2": [ + "K327R", + "P439S", + "P618L" + ], + "nsP3": [ + "S408G", + "A456V" + ], + "nsP4": [ + "P602S" + ] + }, + "labels": { + "aa": "E2: S185L, T379A; nsP2: K327R, P439S, P618L; nsP3: S408G, A456V; nsP4: P602S" + } + }, + "children": [ + { + "name": "MK028848.1", + "node_attrs": { + "div": 0.9483430714141687, + "num_date": { + "value": 1963.448705195891, + "confidence": [ + 1963.2184667564122, + 1964.0989493669413 + ] + }, + "author": { + "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", + "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." + }, + "country": { + "value": "USA", + "confidence": { + "Brazil": 0.001391899342248408, + "Guatemala": 0.001513855506857274, + "USA": 0.9812267775464287, + "Venezuela": 0.0014475312321638608 + }, + "entropy": 0.1451173999258174 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.6566365384511104, + "1964": 0.012476942103914337, + "1967": 0.011122214402784665, + "2013": 0.04392154597498476 + }, + "entropy": 1.9088201454685898 + }, + "subtype": { + "value": "II_EVEV" + }, + "region": { + "value": "NAm", + "confidence": { + "NAm": 0.9991838829755572 + }, + "entropy": 0.006619153549197125 + }, + "place_of_collection": { + "value": "Everglades" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A76G", + "G79A", + "T80C", + "C81T", + "C82T", + "T84G", + "A594G", + "A600G", + "G4680C", + "T4684A", + "T10482A", + "T11323C", + "C11353A", + "T11354G", + "A11360C", + "A11362G", + "C11364A", + "T11365G", + "T11366A", + "G11370T" + ], + "E1": [ + "L161Q" + ], + "nsP1": [ + "D11G", + "S12N", + "P13F", + "F14V", + "M184V", + "K186E" + ], + "nsP3": [ + "D217H", + "I218K" + ] + }, + "labels": { + "aa": "E1: L161Q; nsP1: D11G, S12N, P13F, F14V, M184V, K186E; nsP3: D217H, I218K" + } + } + }, + { + "name": "AF075251.1", + "node_attrs": { + "div": 0.9466286614141688, + "num_date": { + "value": 1963.0013698630137, + "confidence": [ + 1963.0013698630137, + 1963.8709279152777 + ] + }, + "author": { + "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", + "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." + }, + "country": { + "value": "USA", + "confidence": { + "USA": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex (Melanoconion) sp." + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "II_EVEV" + }, + "region": { + "value": "NAm", + "confidence": { + "NAm": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Everglades" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G8383A", + "G9188A" + ], + "E2": [ + "E209K" + ] + }, + "labels": { + "aa": "E2: E209K" + } + } + } + ] + } + ] + }, + { + "name": "NODE_0000057", + "node_attrs": { + "div": 0.8885150814141688, + "num_date": { + "value": 1936.7789501880898, + "confidence": [ + 1936.5147710499273, + 1937.0611946275076 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.03452050804659129, + "Panama": 0.08482518582211607, + "Peru": 0.03225891594522945, + "Venezuela": 0.805924406492294 + }, + "entropy": 0.8411596771927776 + }, + "year": { + "value": "1938", + "confidence": { + "1938": 0.20641021623465725, + "1942": 0.03501667161907897, + "1943": 0.030508833725618297, + "1961": 0.02066159747989069 + }, + "entropy": 3.5347086964347687 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999764948439999 + }, + "entropy": 0.00027402966468049637 + }, + "place_of_collection": { + "value": "Aragua" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T77C", + "T192C", + "T473C", + "T530C", + "G551A", + "G650A", + "G731A", + "A737G", + "A743G", + "A800G", + "A824G", + "A941G", + "C1043T", + "T1160C", + "G1166A", + "T1169C", + "A1178C", + "C1220T", + "C1304T", + "G1316A", + "C1352T", + "T1409A", + "C1442A", + "C1458T", + "G1460A", + "T1469C", + "G1511A", + "C1544G", + "G1565C", + "C1632T", + "A1682G", + "A1700C", + "T1748C", + "G1766T", + "C1829T", + "A1832C", + "A1862G", + "T1865A", + "T1877A", + "C1913T", + "G1946A", + "C1964T", + "G2013A", + "T2014C", + "T2024C", + "T2033C", + "T2072C", + "G2105C", + "C2153T", + "G2159A", + "G2216A", + "C2399T", + "T2405C", + "C2429T", + "A2477C", + "C2486T", + "C2504T", + "G2582T", + "C2616T", + "C2660T", + "A2696C", + "C2723T", + "G2870A", + "T2879C", + "G2885A", + "A2966T", + "A2969G", + "G2987A", + "A3037G", + "T3044C", + "C3101G", + "C3155T", + "C3176T", + "G3206A", + "C3221T", + "T3231C", + "T3236C", + "C3284T", + "G3377A", + "C3410T", + "C3477T", + "C3534T", + "C3635G", + "A3659C", + "A3662G", + "G3668A", + "G3678A", + "G3701A", + "C3756T", + "C3773T", + "C3779T", + "A3791C", + "C3815T", + "C3818T", + "A3824T", + "A3899C", + "G3920T", + "A3923G", + "A3953C", + "C3968T", + "C4001T", + "G4011A", + "T4019C", + "G4089A", + "T4124A", + "A4127G", + "A4217T", + "G4238A", + "T4247C", + "T4262G", + "C4284T", + "A4292G", + "A4337G", + "G4352A", + "A4370C", + "G4427A", + "G4544T", + "C4592T", + "C4622A", + "A4631C", + "C4647T", + "G4733A", + "C4745T", + "T4790C", + "A4823G", + "T4889A", + "A4901T", + "C4916T", + "G5085A", + "G5104T", + "A5123C", + "G5127A", + "A5149T", + "C5171T", + "G5229A", + "A5240G", + "G5249A", + "T5251C", + "G5327A", + "A5334G", + "T5338C", + "C5354A", + "A5394C", + "T5429C", + "T5441A", + "G5471A", + "A5473T", + "T5479C", + "A5480C", + "C5510T", + "T5513C", + "A5528G", + "A5564T", + "A5567C", + "C5645A", + "G5648A", + "G5678A", + "C5693T", + "T5827A", + "T5894C", + "C5996A", + "T6047A", + "G6113T", + "A6122T", + "G6176A", + "A6182T", + "T6204C", + "T6209C", + "C6317T", + "C6342T", + "A6347C", + "G6377A", + "G6416A", + "A6419G", + "A6505T", + "A6509G", + "C6527T", + "T6560A", + "T6566C", + "C6599A", + "G6626A", + "T6659A", + "C6758T", + "C6764T", + "G6863A", + "A6914G", + "T6923C", + "C6938A", + "C6944T", + "C7034A", + "T7037C", + "C7040A", + "T7076A", + "C7091T", + "C7103T", + "A7154C", + "A7298C", + "G7440A", + "G7466A", + "A7588G", + "T7624C", + "T7645C", + "A7678G", + "C7693G", + "G7756A", + "C7787G", + "T7792A", + "A7859G", + "T7948A", + "A8011G", + "T8032C", + "C8092T", + "C8098T", + "C8257T", + "G8266A", + "C8281T", + "A8311G", + "T8368G", + "G8383A", + "C8437T", + "C8459A", + "T8491C", + "C8493T", + "T8515C", + "C8650T", + "C8659A", + "A8662T", + "G8668A", + "T8686C", + "C8695T", + "C8710T", + "C8732T", + "A8749G", + "A8762C", + "T8878G", + "A8893C", + "C8956T", + "A9061G", + "G9100T", + "C9122A", + "T9124C", + "C9133T", + "A9145T", + "C9277T", + "G9283T", + "G9313C", + "A9364C", + "G9373A", + "G9400T", + "C9442A", + "T9484G", + "A9529T", + "G9550A", + "A9613G", + "G9649A", + "C9757T", + "A9835G", + "C9862A", + "C9896T", + "C9917T", + "G9925A", + "A9942G", + "C9955T", + "A10026G", + "G10036A", + "T10069C", + "C10130T", + "T10141C", + "T10216C", + "C10222T", + "A10333T", + "A10372G", + "C10425T", + "T10468C", + "A10474G", + "A10525C", + "C10567T", + "T10633A", + "C10832T", + "T10861C", + "T10918C", + "A10921G", + "A10996G", + "T11068C", + "T11155C", + "T11200C", + "A11218G", + "G11248A", + "T11302C" + ], + "6k": [ + "K37R" + ], + "CP": [ + "R76G", + "T100A" + ], + "E1": [ + "N9S", + "T142I" + ], + "E2": [ + "P57S", + "P187T" + ], + "E3": [ + "A36V" + ], + "nsP2": [ + "V122T", + "M446I", + "K463R", + "E670D", + "V677I", + "G788R" + ], + "nsP3": [ + "V20I", + "A352T", + "R358L", + "A366T", + "N373I", + "V400I", + "F407S", + "M435V", + "I436T", + "M455L", + "H481L", + "L483P" + ], + "nsP4": [ + "L42Q", + "Y268F", + "V580I" + ] + }, + "labels": { + "aa": "6k: K37R; CP: R76G, T100A; E1: N9S, T142I; E2: P57S, P187T; E3: A36V; nsP2: V122T, M446I, K463R, E670D, V677I, G788R; nsP3: V20I, A352T, R358L, A366T, N373I, V400I, F407S, M435V, I436T, M455L, H481L, L483P; nsP4: L42Q, Y268F, V580I" + } + }, + "children": [ + { + "name": "NODE_0000058", + "node_attrs": { + "div": 0.9071568214141688, + "num_date": { + "value": 1960.215008578601, + "confidence": [ + 1959.9187566391079, + 1960.4359628463394 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9946107168840952, + "Venezuela": 0.0027981281161535737 + }, + "entropy": 0.043727277887588345 + }, + "year": { + "value": "1961", + "confidence": { + "1938": 0.013802075560096778, + "1960": 0.01503460623093911, + "1961": 0.5075113099818185, + "1962": 0.02445341200803893 + }, + "entropy": 2.5697291249910714 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999992767388375 + }, + "entropy": 1.0949806823584208e-05 + }, + "place_of_collection": { + "value": "Canito" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T161C", + "T332C", + "T356C", + "T371C", + "G437A", + "T440C", + "T533C", + "T545C", + "T599C", + "T741C", + "G779A", + "T804C", + "T1056C", + "G1109A", + "C1199A", + "G1205A", + "T1280C", + "G1319A", + "G1406A", + "A1421G", + "A1439G", + "T1529C", + "G1544A", + "C1565T", + "C1608T", + "T1667G", + "C1712A", + "T1733C", + "T1761C", + "C1769T", + "T1778C", + "C1844T", + "G1859T", + "T1874C", + "T1907C", + "C1916T", + "C1928T", + "A1934G", + "T1976C", + "C2009T", + "G2114A", + "C2141T", + "A2168T", + "T2177C", + "A2246G", + "A2258G", + "G2321A", + "A2357G", + "T2364C", + "C2394T", + "C2435T", + "T2453C", + "C2540T", + "C2615T", + "A2632G", + "G2645A", + "C2690T", + "T2714C", + "T2756C", + "T2813A", + "C2922T", + "C2930T", + "C2963T", + "T2966C", + "G2990A", + "T3047C", + "G3062A", + "T3065C", + "C3113T", + "C3119T", + "T3158C", + "C3227T", + "T3248C", + "G3381A", + "C3395T", + "C3407T", + "T3413C", + "C3443T", + "C3444T", + "T3473C", + "T3570C", + "T3600C", + "C3608T", + "A3653G", + "T3683C", + "G3692A", + "C3716T", + "T3719C", + "T3728C", + "T3824C", + "T3848C", + "T3851C", + "A3890G", + "C3899T", + "T3983C", + "T3987C", + "T4061C", + "T4088A", + "A4109G", + "T4145C", + "G4148A", + "T4211C", + "C4226T", + "C4235T", + "C4253T", + "T4259C", + "G4266A", + "C4304T", + "T4325C", + "C4397T", + "T4436C", + "C4535T", + "T4544A", + "A4547G", + "T4601A", + "G4610A", + "C4625T", + "A4643G", + "C4658T", + "T4664C", + "A4688G", + "T4712C", + "C4739T", + "C4760T", + "T4769C", + "A4814G", + "C4880G", + "T4931C", + "G4997A", + "A5057C", + "A5099G", + "G5100A", + "G5120A", + "G5126A", + "T5138C", + "G5141A", + "C5147T", + "C5150T", + "C5153T", + "G5159A", + "T5180C", + "C5234T", + "T5246A", + "T5248C", + "C5261T", + "C5297T", + "T5301C", + "A5303G", + "G5345A", + "C5347A", + "C5356T", + "T5384C", + "T5417C", + "T5444G", + "A5465G", + "T5474C", + "C5480T", + "C5500T", + "C5525A", + "A5546G", + "T5564C", + "T5582C", + "G5597A", + "C5612A", + "C5618T", + "G5621T", + "C5844T", + "A5864G", + "T5876C", + "G5906A", + "A5921G", + "T5933C", + "C5993T", + "A6023G", + "T6026C", + "T6029C", + "C6035T", + "T6074C", + "C6080T", + "T6104C", + "A6128G", + "C6170T", + "C6173T", + "C6227T", + "A6308G", + "T6323C", + "T6362C", + "G6395A", + "T6497A", + "G6533A", + "C6551T", + "A6569G", + "A6611G", + "G6617A", + "C6620A", + "T6704C", + "G6707T", + "T6737C", + "G6746A", + "C6779T", + "T6794C", + "T6827C", + "C6839T", + "C6879T", + "T6911C", + "A6992G", + "C7005T", + "T7025C", + "T7031C", + "A7034G", + "G7052A", + "A7076G", + "T7163C", + "G7190A", + "A7202G", + "T7226C", + "G7256A", + "C7275T", + "T7304A", + "G7349A", + "A7406T", + "G7588T", + "C7726A", + "A7792G", + "A7840G", + "G7843A", + "T7849C", + "C7918T", + "T7925C", + "C7936T", + "G8029A", + "A8071G", + "A8131G", + "T8158C", + "T8173C", + "T8194C", + "C8227T", + "C8239T", + "A8242G", + "C8260T", + "G8287A", + "C8353T", + "C8374T", + "T8476C", + "T8494C", + "T8500G", + "T8518C", + "G8527A", + "C8548A", + "C8566T", + "C8569T", + "T8605C", + "C8623T", + "T8629C", + "T8698C", + "G8716A", + "C8734T", + "C8815T", + "T8854C", + "C8860T", + "C8861T", + "C8887T", + "G8935A", + "T8986C", + "A9079T", + "T9095C", + "T9100C", + "C9103T", + "C9172T", + "C9313T", + "G9328A", + "A9379G", + "T9385G", + "T9400A", + "T9430C", + "C9451T", + "A9505G", + "C9507T", + "T9517C", + "C9523T", + "G9538A", + "A9556T", + "A9601G", + "T9655C", + "C9664T", + "T9694C", + "A9697G", + "G9707A", + "T9709C", + "T9730A", + "T9745C", + "C9814T", + "C9817T", + "T9856C", + "C9859T", + "C9868T", + "C9922T", + "C9946T", + "T10040C", + "T10120C", + "C10180T", + "C10243T", + "T10273G", + "C10300T", + "C10318T", + "C10321T", + "T10366C", + "C10420T", + "T10492C", + "G10495A", + "C10531T", + "T10555C", + "T10561C", + "A10588G", + "C10624T", + "T10642C", + "T10702A", + "A10741G", + "C10777T", + "C10810T", + "A10819G", + "C10849T", + "C10912T", + "G10951A", + "C10960T", + "G10981A", + "T11008A", + "G11030A", + "C11036T", + "T11080C", + "T11119C", + "C11254T", + "T11355C", + "C11364T", + "C11366T" + ], + "CP": [ + "D55E" + ], + "E1": [ + "S14P", + "V344I" + ], + "E2": [ + "A315V", + "V382I", + "F389L" + ], + "nsP2": [ + "M224I", + "K328R", + "A578T" + ], + "nsP3": [ + "V79I", + "A357T", + "V406A", + "A439E", + "A442V", + "H471Q", + "T490I" + ] + }, + "labels": { + "aa": "CP: D55E; E1: S14P, V344I; E2: A315V, V382I, F389L; nsP2: M224I, K328R, A578T; nsP3: V79I, A357T, V406A, A439E, A442V, H471Q, T490I" + } + }, + "children": [ + { + "name": "NODE_0000059", + "node_attrs": { + "div": 0.9186174314141687, + "num_date": { + "value": 1977.6218516995843, + "confidence": [ + 1977.4917707958039, + 1977.7391097253992 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.99998202122369 + }, + "entropy": 0.0002580823738290343 + }, + "year": { + "value": "1977", + "confidence": { + "1973": 0.01006514281609534, + "1977": 0.703658925912374, + "1978": 0.012119812759740002, + "1984": 0.02112190192290875 + }, + "entropy": 1.7262795833881772 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999585169097 + }, + "entropy": 7.466098292401852e-07 + }, + "place_of_collection": { + "value": "Bayana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T378C", + "G423A", + "C473T", + "A617T", + "T1061C", + "A1202G", + "A1205G", + "G1265A", + "A1268C", + "A1319G", + "T1340C", + "T1352C", + "C1469T", + "C1502T", + "C1529T", + "T1589C", + "T1619C", + "A1634G", + "C1706T", + "C1721T", + "C1742T", + "T1829C", + "A1850G", + "C1874T", + "C1907T", + "T1922C", + "T1997C", + "C2006T", + "G2258A", + "C2328T", + "T2394C", + "T2429C", + "T2540C", + "C2573T", + "C2579T", + "A2639G", + "A2645T", + "T2666C", + "T2690C", + "A2813C", + "T2846C", + "A2885G", + "A3095G", + "T3227C", + "C3296T", + "A3416C", + "T3444C", + "T3477C", + "A3581G", + "G3590A", + "C3596T", + "T3642C", + "T3671C", + "C3698T", + "T3716C", + "C3728T", + "C3806T", + "T3815C", + "G3860T", + "C3887T", + "A3917G", + "C3987T", + "A4088C", + "C4259A", + "A4313G", + "A4329C", + "C4409T", + "T4425C", + "A4514T", + "T4535C", + "C4538T", + "A4610G", + "C4616T", + "T4739C", + "A4805T", + "C4820T", + "T4844C", + "T4901C", + "C4979T", + "G4985T", + "G5084A", + "A5100G", + "T5104C", + "G5144A", + "T5150C", + "C5174T", + "C5192T", + "A5246G", + "C5255T", + "A5354T", + "G5453A", + "T5500C", + "C5555T", + "A5565G", + "A5601G", + "G5639A", + "G5789A", + "T5841C", + "G5864A", + "T5993C", + "T6080C", + "C6144T", + "T6167A", + "T6182C", + "C6323T", + "T6464C", + "G6509A", + "T6518C", + "T6551C", + "A6552C", + "C6566T", + "C6677T", + "A6698G", + "T6758C", + "T6764C", + "T6797C", + "C6870T", + "T6879C", + "G6887A", + "C6977T", + "C7062T", + "A7082T", + "C7088T", + "C7106T", + "G7223A", + "C7226T", + "A7256G", + "T7347C", + "T7388C", + "T7436C", + "C7699T", + "C7854A", + "T7918C", + "T7936C", + "A7993G", + "C8045T", + "C8194T", + "A8218T", + "T8299C", + "C8416T", + "G8521A", + "G8554A", + "T8635A", + "C8644T", + "T8767C", + "A8805G", + "T8818C", + "C8836T", + "T8851C", + "T8905C", + "C8926T", + "C8986T", + "C9022T", + "A9046G", + "T9103C", + "T9104C", + "T9115C", + "A9301G", + "C9326T", + "G9388A", + "T9451C", + "G9505A", + "T9507C", + "T9577C", + "C9688T", + "T9823C", + "C9832T", + "C9860T", + "T9868C", + "C9892T", + "C10040T", + "A10075G", + "C10120T", + "T10207A", + "G10297A", + "C10576T", + "T10600C", + "A10702G", + "T10744C", + "C10762A", + "C10771T", + "A10951G", + "A11030G", + "G11039A", + "T11254C", + "T11366C" + ], + "CP": [ + "P98Q" + ], + "E1": [ + "P14S", + "I344V", + "A347T" + ], + "E2": [ + "Q81R", + "M275I", + "V315A" + ], + "nsP1": [ + "D127N" + ], + "nsP3": [ + "N100H", + "T357A", + "L358P", + "I490T", + "T512A", + "T524A" + ] + }, + "labels": { + "aa": "CP: P98Q; E1: P14S, I344V, A347T; E2: Q81R, M275I, V315A; nsP1: D127N; nsP3: N100H, T357A, L358P, I490T, T512A, T524A" + } + }, + "children": [ + { + "name": "KC344472.1", + "node_attrs": { + "div": 0.9231877714141687, + "num_date": { + "value": 1984.0013661202186, + "confidence": [ + 1984.0013661202186, + 1984.8989071038252 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1984", + "confidence": { + "1984": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Bayana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A234G", + "C356T", + "A423G", + "T434C", + "C807T", + "T1529C", + "T1643C", + "T1784C", + "C1829T", + "A1853G", + "T1916C", + "C1955T", + "G1958A", + "T2015C", + "T2237C", + "A2662G", + "C2690T", + "T3195C", + "A3497G", + "T3737C", + "T3899C", + "C3941T", + "T4100C", + "C4322T", + "T4616C", + "C4739T", + "T4760C", + "A4895G", + "C5075T", + "A5206G", + "T5273G", + "C5342T", + "A5499T", + "G5588A", + "A6062G", + "C6074T", + "T6098C", + "T6197A", + "G6344A", + "C6467T", + "A6528G", + "T6529C", + "G6698A", + "T6944C", + "T7062C", + "C7118T", + "T7211C", + "C7624T", + "A8104G", + "A8215G", + "G8805A", + "C8818T", + "G9046A", + "C9134T", + "T9139C", + "C9150T", + "T9529C", + "C9577T", + "C9678T", + "C10186T", + "T10421C", + "C10651A", + "T10720C" + ], + "E1": [ + "S141P" + ], + "E2": [ + "R81Q", + "P191S", + "A196V", + "S372L" + ], + "nsP1": [ + "I64V", + "N127D" + ], + "nsP2": [ + "K338R" + ], + "nsP3": [ + "Q392R", + "T490S" + ], + "nsP4": [ + "M276A" + ] + }, + "labels": { + "aa": "E1: S141P; E2: R81Q, P191S, A196V, S372L; nsP1: I64V, N127D; nsP2: K338R; nsP3: Q392R, T490S; nsP4: M276A" + } + } + }, + { + "name": "NODE_0000060", + "node_attrs": { + "div": 0.9194341314141687, + "num_date": { + "value": 1977.795300440685, + "confidence": [ + 1977.725565280593, + 1977.8689713701258 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999978491821081 + }, + "entropy": 3.513144415100616e-05 + }, + "year": { + "value": "1977", + "confidence": { + "1973": 0.007300731354643916, + "1977": 0.7908090310607712, + "1978": 0.008844792836837865, + "1984": 0.014252682845327888 + }, + "entropy": 1.3028453944939242 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999971755986 + }, + "entropy": 5.842065933213634e-08 + }, + "place_of_collection": { + "value": "Bayana" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "KC344473.2", + "node_attrs": { + "div": 0.9293767714141687, + "num_date": { + "value": 1997.0013698630137, + "confidence": [ + 1997.0013698630137, + 1997.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1997", + "confidence": { + "1997": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Ma\u00f1anitas" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A12G", + "G293A", + "A389G", + "C470A", + "C1160T", + "C1172T", + "T1311C", + "G1562A", + "A1655G", + "A1710C", + "A1712G", + "A1724T", + "C1841A", + "A1865T", + "A1937G", + "C1949T", + "C2027T", + "A2108T", + "C2115T", + "A2162G", + "C2192T", + "T2237C", + "C2276T", + "A2300C", + "A2426G", + "A2456C", + "T2462A", + "G2780A", + "A2936G", + "C2949T", + "C3158T", + "T3195C", + "C3209T", + "C3239T", + "C3321T", + "T3443C", + "G3467A", + "G3576A", + "C3671T", + "T3686A", + "T3737C", + "T3770C", + "A3896G", + "T3899C", + "T4223C", + "G4499A", + "C4621T", + "C4784T", + "C4871T", + "T4985C", + "C5018T", + "C5062T", + "A5071G", + "C5097T", + "G5236A", + "C5319T", + "C5375T", + "C5449T", + "A5460C", + "A5600G", + "C5993T", + "T6125C", + "T6173C", + "A6251G", + "C6326T", + "T6401C", + "A6416G", + "A6488G", + "C6518T", + "G6575A", + "T6699C", + "C6740T", + "A6929G", + "A6938G", + "C7127T", + "A7511C", + "C7609T", + "C7651T", + "C7918T", + "T8045C", + "T8086G", + "T8200A", + "A8229G", + "C8236T", + "G8509A", + "T8695C", + "T8833C", + "T8836G", + "A9092C", + "C9223T", + "C9422T", + "A9480T", + "C9481T", + "G9748A", + "G9799A", + "T9871C", + "C10072T", + "A10159T", + "T10279C", + "T10354C", + "C10423T", + "C10465T", + "T10481C", + "C10485T", + "C10606T", + "A10762G", + "T10768C", + "C10846T", + "C10861T", + "A11026T", + "T11357C", + "C11366T" + ], + "CP": [ + "K223R" + ], + "E1": [ + "T162I" + ], + "E2": [ + "H91Q", + "S177R", + "Y306F" + ], + "nsP1": [ + "F423L" + ], + "nsP2": [ + "I21L", + "V643I" + ], + "nsP3": [ + "T197I", + "A344V", + "Q347R", + "P356S", + "G402E", + "A473V" + ] + }, + "labels": { + "aa": "CP: K223R; E1: T162I; E2: H91Q, S177R, Y306F; nsP1: F423L; nsP2: I21L, V643I; nsP3: T197I, A344V, Q347R, P356S, G402E, A473V" + } + } + }, + { + "name": "NODE_0000061", + "node_attrs": { + "div": 0.9198086314141688, + "num_date": { + "value": 1977.8495291326633, + "confidence": [ + 1977.7900139921237, + 1977.8986763047988 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999992692178841 + }, + "entropy": 1.2791965847437398e-05 + }, + "year": { + "value": "1977", + "confidence": { + "1973": 0.003977094613716925, + "1977": 0.8891070961561618, + "1978": 0.0048465644209685545, + "1984": 0.007246016192434486 + }, + "entropy": 0.7672509637894915 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999983749992 + }, + "entropy": 3.450937210189338e-08 + }, + "place_of_collection": { + "value": "Bayana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G2632A", + "G4577A", + "C5951A" + ], + "nsP2": [ + "R328K" + ] + }, + "labels": { + "aa": "nsP2: R328K" + } + }, + "children": [ + { + "name": "KC344503.2", + "node_attrs": { + "div": 0.9218834314141688, + "num_date": { + "value": 1977.9986301369863, + "confidence": [ + 1977.9744540715897, + 1977.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex aikenii sensu lato" + }, + "year": { + "value": "1977", + "confidence": { + "1977": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Bayana" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C530T", + "G2096A", + "C2363T", + "C2507T", + "C2759T", + "A4932C", + "C6437T", + "A6545G", + "T6839C", + "A6893G", + "C7298T", + "A7402G", + "T8080C", + "C8128T", + "C8752G", + "C10000T", + "C10615T", + "A11008G", + "C11119T", + "C11185T" + ], + "nsP4": [ + "K567R" + ] + }, + "labels": { + "aa": "nsP4: K567R" + } + } + }, + { + "name": "NODE_0000062", + "node_attrs": { + "div": 0.9220441014141688, + "num_date": { + "value": 1998.9837646891283, + "confidence": [ + 1998.638443432503, + 1999.2449588278455 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999723279412543 + }, + "entropy": 0.0003868382264932001 + }, + "year": { + "value": "2000", + "confidence": { + "1997": 0.009277264588302976, + "2000": 0.524585810111202, + "2001": 0.2284019647426833, + "2003": 0.008636699966375883 + }, + "entropy": 1.9575502186959852 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999232708316 + }, + "entropy": 1.3337798979028593e-06 + }, + "place_of_collection": { + "value": "Felipillo" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A423G", + "T770C", + "C1394T", + "T1547C", + "T1730C", + "C2018T", + "C2027T", + "A2066G", + "C2714T", + "C3836T", + "T3899C", + "T4046C", + "C4154T", + "C4901T", + "A5215G", + "C6878T", + "T7088C", + "C7573T", + "C7612T", + "A8287G", + "G8805A", + "A9118G", + "T9313C", + "C10141T", + "G10231A", + "T10357A", + "G10921A", + "C10984T", + "T11357C" + ], + "E2": [ + "R81Q" + ], + "nsP1": [ + "N127D" + ], + "nsP3": [ + "Q395R" + ] + }, + "labels": { + "aa": "E2: R81Q; nsP1: N127D; nsP3: Q395R" + } + }, + "children": [ + { + "name": "KC344510.1", + "node_attrs": { + "div": 0.9266090214141688, + "num_date": { + "value": 2000.0013661202186, + "confidence": [ + 2000.0013661202186, + 2000.4849647559768 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "2000", + "confidence": { + "2000": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Felipillo" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C562T", + "T620C", + "G1046A", + "C1061T", + "C1208T", + "G1325A", + "T2168C", + "C2171T", + "C2207T", + "T2328C", + "C2444T", + "C2501T", + "C2507T", + "T2531C", + "G2633A", + "C2826A", + "G2897A", + "C2981T", + "C3311T", + "T3395C", + "A3521G", + "G3576A", + "C3869T", + "T3956C", + "C4069T", + "T4097A", + "G4463A", + "G4799A", + "T5105C", + "G5348A", + "C5518T", + "C5792T", + "T6959C", + "G7124A", + "G7397A", + "G7879A", + "C7888T", + "C8576T", + "A9415G", + "C9451T", + "T9478C", + "T9556C", + "T9674C", + "C9699T", + "C9886T", + "C10000T", + "C10153T", + "C10339T", + "T10425C", + "A10681G", + "G11035T" + ], + "E1": [ + "I142T", + "E345D" + ], + "E2": [ + "T379I" + ], + "nsP1": [ + "A173V" + ], + "nsP2": [ + "V643I" + ], + "nsP3": [ + "T13M", + "P496L" + ] + }, + "labels": { + "aa": "E1: I142T, E345D; E2: T379I; nsP1: A173V; nsP2: V643I; nsP3: T13M, P496L" + } + } + }, + { + "name": "NODE_0000063", + "node_attrs": { + "div": 0.9240767614141688, + "num_date": { + "value": 2000.9645077711382, + "confidence": [ + 2000.7986019273446, + 2001.4051053463197 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999999072946589 + }, + "entropy": 1.8124084519354654e-06 + }, + "year": { + "value": "2001", + "confidence": { + "2001": 0.9977037829718297 + }, + "entropy": 0.021930470786578435 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999996290933 + }, + "entropy": 8.42317611277633e-09 + }, + "place_of_collection": { + "value": "Darien" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C404T", + "T758C", + "C807T", + "C1688A", + "T2291C", + "C2756T", + "C2949T", + "C2966T", + "T3011C", + "G3037A", + "T3281C", + "T3443C", + "G3654A", + "C3671T", + "A5120G", + "C6615A", + "C6897T", + "T7275C", + "T8188C", + "G9343A", + "G9748A", + "G10393A", + "C10561T" + ], + "nsP2": [ + "R463K", + "G669S" + ] + }, + "labels": { + "aa": "nsP2: R463K, G669S" + } + }, + "children": [ + { + "name": "KC344511.1", + "node_attrs": { + "div": 0.9249627614141689, + "num_date": { + "value": 2001.129501022713, + "confidence": [ + 2001.0013698630137, + 2001.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "2001", + "confidence": { + "2001": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Darien" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A83G", + "C1718T", + "A2948G", + "C5489T", + "C6179T", + "G7199A", + "C7214T", + "C9473T", + "A10807G", + "A11077T" + ], + "E2": [ + "P304S" + ] + }, + "labels": { + "aa": "E2: P304S" + } + } + }, + { + "name": "NODE_0000064", + "node_attrs": { + "div": 0.9244239214141688, + "num_date": { + "value": 2001.4676525278671, + "confidence": [ + 2001.1820960161365, + 2001.7768893708148 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999999101007335 + }, + "entropy": 1.7608204921437846e-06 + }, + "year": { + "value": "2001", + "confidence": { + "2001": 0.9962036893462944, + "2003": 0.0026702577234856994 + }, + "entropy": 0.031118823566937726 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999996246239 + }, + "entropy": 8.520200408930727e-09 + }, + "place_of_collection": { + "value": "Yaviza" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C3992A", + "A6893G", + "T9079C", + "T11161C" + ] + } + }, + "children": [ + { + "name": "KC344474.1", + "node_attrs": { + "div": 0.9253931814141688, + "num_date": { + "value": 2001.7339189975237, + "confidence": [ + 2001.0013698630137, + 2001.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "2001", + "confidence": { + "2001": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Yaviza" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A1460G", + "A1605G", + "C3520T", + "C3869T", + "C4430T", + "C5309T", + "C5333T", + "G5966A", + "C7540T", + "A9538G", + "C10555T" + ], + "nsP1": [ + "T521A" + ], + "nsP2": [ + "S624L" + ] + }, + "labels": { + "aa": "nsP1: T521A; nsP2: S624L" + } + } + }, + { + "name": "KC344475.1", + "node_attrs": { + "div": 0.9258368514141688, + "num_date": { + "value": 2003.0013698630137, + "confidence": [ + 2003.0013698630137, + 2003.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "2003", + "confidence": { + "2003": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Santa_Fe" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A2378G", + "A2919T", + "C3045T", + "T3800C", + "A4601T", + "C4784T", + "T5023C", + "C5567T", + "C6737T", + "A7681G", + "T7682C", + "T8000C", + "G9448A", + "C10255T", + "A10678C", + "C10918T" + ], + "nsP2": [ + "T424S", + "P466S" + ], + "nsP3": [ + "V331A" + ] + }, + "labels": { + "aa": "nsP2: T424S, P466S; nsP3: V331A" + } + } + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000065", + "node_attrs": { + "div": 0.9118081014141688, + "num_date": { + "value": 1961.1219312559194, + "confidence": [ + 1960.9529117294476, + 1961.2246169636787 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9988119982985009 + }, + "entropy": 0.011373049866446092 + }, + "year": { + "value": "1961", + "confidence": { + "1938": 0.0037307153213669967, + "1960": 0.004154275354658755, + "1961": 0.8749884373511139, + "1962": 0.01030137297380039 + }, + "entropy": 0.8480038297510887 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999178028702 + }, + "entropy": 1.4231710581790188e-06 + }, + "place_of_collection": { + "value": "Canito" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T2126A", + "T3593A", + "A4391C", + "C5034A", + "C5042A", + "A10597T", + "T10888A" + ], + "nsP3": [ + "P335T", + "D337E" + ] + }, + "labels": { + "aa": "nsP3: P335T, D337E" + } + }, + "children": [ + { + "name": "NODE_0000066", + "node_attrs": { + "div": 0.9132328114141688, + "num_date": { + "value": 1961.2590553525072, + "confidence": [ + 1961.1282534123573, + 1961.3600120395683 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999887531353837 + }, + "entropy": 0.0001562391468587659 + }, + "year": { + "value": "1961", + "confidence": { + "1961": 0.9879309889067656, + "1962": 0.004715001957111084 + }, + "entropy": 0.1011466961807448 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999998030383076 + }, + "entropy": 3.2380987402250635e-06 + }, + "place_of_collection": { + "value": "Canito" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A5840G", + "G8224A", + "A9790G", + "A10156G" + ] + } + }, + "children": [ + { + "name": "L00930.1", + "node_attrs": { + "div": 0.9198603214141687, + "num_date": { + "value": 1961.9986301369863, + "confidence": [ + 1961.9479688332087, + 1961.9986301369863 + ] + }, + "author": { + "author": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W.", + "value": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1961", + "confidence": { + "1961": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9995622828865299 + }, + "entropy": 0.0038228981921168493 + }, + "place_of_collection": { + "value": "Canito" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26G", + "T173C", + "C284T", + "T378C", + "G395A", + "C638T", + "C761T", + "A779G", + "C804T", + "T920C", + "C1403T", + "G1421A", + "C1570T", + "C1733T", + "C1892T", + "C2147T", + "T2237C", + "A2317G", + "C2379T", + "A2489C", + "C2537T", + "C2564T", + "A2772G", + "G2852T", + "C2966T", + "T3134C", + "C3204T", + "C3413T", + "C3683T", + "C3983T", + "C4244G", + "T4388C", + "C4712T", + "C5018T", + "A5116G", + "A5246C", + "G5351A", + "T5370C", + "C5384T", + "C5447A", + "C5576T", + "A5612T", + "C5771T", + "C5933T", + "A6389G", + "T6521C", + "C6677A", + "T6692C", + "T6797C", + "A6929G", + "C7088T", + "C7464T", + "G7496A", + "T7682C", + "G7909A", + "C8035T", + "C8041T", + "T8299C", + "T8434C", + "C8602T", + "C8620T", + "G8872A", + "T8915G", + "C9124T", + "T9139G", + "G10258A", + "C10762T", + "C10771T", + "T10849A", + "T11333C", + "C11378A" + ], + "E2": [ + "S118A" + ], + "nsP1": [ + "A509V" + ], + "nsP2": [ + "K223R", + "H244Y", + "I375V" + ], + "nsP3": [ + "D362G", + "Y447H" + ] + }, + "labels": { + "aa": "E2: S118A; nsP1: A509V; nsP2: K223R, H244Y, I375V; nsP3: D362G, Y447H" + } + } + }, + { + "name": "NODE_0000067", + "node_attrs": { + "div": 0.9171270114141687, + "num_date": { + "value": 1961.904290646641, + "confidence": [ + 1961.8474767773998, + 1961.9521842736115 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999999332320636 + }, + "entropy": 1.3154852057407557e-06 + }, + "year": { + "value": "1961", + "confidence": { + "1961": 0.9901170461011175, + "1962": 0.008123573777160931 + }, + "entropy": 0.06658310509000855 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999996768582 + }, + "entropy": 7.38274113177836e-09 + }, + "place_of_collection": { + "value": "Panama" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A31T", + "T146C", + "G359A", + "C587T", + "C807T", + "C815T", + "T857C", + "C1056T", + "G1241A", + "C1394T", + "T1847C", + "C2519T", + "G2651A", + "A2867G", + "T3737C", + "T4097G", + "T4298C", + "T4637C", + "C5657T", + "T6143C", + "G6206A", + "A6350T", + "C6722T", + "G6734T", + "C6977T", + "C7151T", + "C7214T", + "T7951C", + "C8164T", + "G8542A", + "A8653T", + "T9139C", + "C9163T", + "C9622T", + "G9943A", + "A10159C", + "C10516T", + "T10558C", + "C10930T", + "G11071A", + "C11407T", + "T11409C", + "C11412T", + "T11414C", + "C11417T" + ] + } + }, + "children": [ + { + "name": "KC344506.1", + "node_attrs": { + "div": 0.9179255814141688, + "num_date": { + "value": 1961.9986301369863, + "confidence": [ + 1961.9606274302548, + 1961.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1961", + "confidence": { + "1961": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Panama" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1602T", + "T5363C", + "T6578C", + "A7473T", + "G7787A", + "A8462G", + "T8905C", + "G9166A", + "C10488T" + ], + "CP": [ + "G76R" + ], + "E1": [ + "A163V" + ], + "E3": [ + "K26E" + ], + "nsP1": [ + "P520S" + ], + "nsP4": [ + "S591C" + ] + }, + "labels": { + "aa": "CP: G76R; E1: A163V; E3: K26E; nsP1: P520S; nsP4: S591C" + } + } + }, + { + "name": "NODE_0000068", + "node_attrs": { + "div": 0.9176597814141687, + "num_date": { + "value": 1962.8464854598285, + "confidence": [ + 1962.7491913740969, + 1962.9276253020396 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999997292388916 + }, + "entropy": 5.008036419688654e-06 + }, + "year": { + "value": "1962", + "confidence": { + "1961": 0.22644059760528537, + "1962": 0.6814185802288444, + "1965": 0.017496644838374528, + "1966": 0.01905853858524819 + }, + "entropy": 1.1122975926881051 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999989123295 + }, + "entropy": 2.3534352620904426e-08 + }, + "place_of_collection": { + "value": "El_Rincon" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T2963C", + "C3158T", + "T4647C", + "C6890T", + "C8686T", + "C11119T" + ] + } + }, + "children": [ + { + "name": "KC344488.2", + "node_attrs": { + "div": 0.9189153214141688, + "num_date": { + "value": 1966.0013698630137, + "confidence": [ + 1966.0013698630137, + 1966.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1966", + "confidence": { + "1966": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "El_Rincon" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G1541A", + "A1757G", + "C2293T", + "C4361T", + "C4820T", + "A4997G", + "G5210A", + "C6000T", + "T6879C", + "T8251C", + "G9472T", + "T9681C", + "T9793G", + "C10009T" + ], + "E2": [ + "E303D", + "I373T" + ], + "nsP2": [ + "A215V" + ] + }, + "labels": { + "aa": "E2: E303D, I373T; nsP2: A215V" + } + } + }, + { + "name": "NODE_0000069", + "node_attrs": { + "div": 0.9178356214141687, + "num_date": { + "value": 1962.904298670799, + "confidence": [ + 1962.830443685371, + 1962.9490184505053 + ] + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 0.9999999612392061 + }, + "entropy": 7.912918962681346e-07 + }, + "year": { + "value": "1962", + "confidence": { + "1961": 0.10021144898360261, + "1962": 0.839544649399754, + "1965": 0.021728637607770322, + "1966": 0.008254345458728869 + }, + "entropy": 0.7189270631929081 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999998430017 + }, + "entropy": 3.69920564466372e-09 + }, + "place_of_collection": { + "value": "El_Rincon" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T6401C", + "T8662C" + ] + } + }, + "children": [ + { + "name": "KC344471.1", + "node_attrs": { + "div": 0.9186332614141688, + "num_date": { + "value": 1962.9986301369863, + "confidence": [ + 1962.9532988365195, + 1962.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1962", + "confidence": { + "1962": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "El_Rincon" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C791T", + "A2631C", + "T5185A", + "C7728T", + "C7888T", + "T8278C", + "C9201A", + "G9898A", + "G10622A" + ], + "CP": [ + "A56V" + ], + "E1": [ + "V208I" + ], + "E2": [ + "T213K" + ], + "nsP3": [ + "L385Q" + ] + }, + "labels": { + "aa": "CP: A56V; E1: V208I; E2: T213K; nsP3: L385Q" + } + } + }, + { + "name": "KC344518.1", + "node_attrs": { + "div": 0.9188209814141688, + "num_date": { + "value": 1965.0013698630137, + "confidence": [ + 1965.0013698630137, + 1965.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1965", + "confidence": { + "1965": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Gamboa" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1772T", + "A1856G", + "C2537T", + "C5924T", + "T7400C", + "G7403A", + "T7469C", + "A7488T", + "A9122G", + "T9508C", + "A10825G", + "C11418T" + ], + "E2": [ + "T187A" + ], + "nsP4": [ + "S596C" + ] + }, + "labels": { + "aa": "E2: T187A; nsP4: S596C" + } + } + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000070", + "node_attrs": { + "div": 0.9216750814141688, + "num_date": { + "value": 1994.3479504776697, + "confidence": [ + 1994.1157781352858, + 1994.4796286209057 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9997275972787214 + }, + "entropy": 0.0031392297556186027 + }, + "year": { + "value": "1994", + "confidence": { + "1994": 0.5721561018836676, + "1995": 0.08617933804144964, + "1997": 0.08595418572235866, + "1998": 0.011010462506736337 + }, + "entropy": 2.0548547348541355 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999265527042 + }, + "entropy": 1.2799418232272668e-06 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T146C", + "C192T", + "C401T", + "T725C", + "T773C", + "C807T", + "G812A", + "C815T", + "T944A", + "C986T", + "A1049G", + "G1265A", + "T1304C", + "C1403T", + "C1448T", + "T1458C", + "T1859C", + "C2046T", + "A2257G", + "C2261T", + "G2357C", + "T2402C", + "T2462A", + "T2504C", + "G2699A", + "T2849C", + "C2975T", + "C3014T", + "C3080T", + "A3122T", + "C3204T", + "C3296T", + "C3321T", + "T3380C", + "A3521G", + "T3737C", + "C3791T", + "C3827T", + "C3941T", + "A4088C", + "T4094C", + "A4124C", + "T4226C", + "A4454C", + "C4457T", + "T4502C", + "A4532C", + "G4577A", + "C4772T", + "T5073C", + "T5105C", + "T5129C", + "G5144A", + "C5174T", + "C5211T", + "T5330C", + "C5342T", + "G5465A", + "C5489T", + "G5577A", + "G5903A", + "T5993C", + "C6026T", + "T6080C", + "C6095T", + "T6170C", + "T6174C", + "C6179T", + "C6347T", + "T6368C", + "C6431T", + "T6470C", + "T6522C", + "A6533G", + "G6575A", + "C6755T", + "C6833T", + "T6861C", + "T6879C", + "T7005C", + "C7022T", + "C7100T", + "C7226T", + "A7301G", + "T7347C", + "A7382G", + "A7391G", + "C7699T", + "G7789A", + "A7798G", + "C8041T", + "T8200C", + "T8374C", + "A8467G", + "G8559A", + "C8576T", + "C8698T", + "C8737T", + "C8770T", + "C8926T", + "A8935G", + "T9052C", + "C9112T", + "T9145C", + "C9290T", + "A9409G", + "T9451A", + "G9464A", + "T9507C", + "T9682C", + "C9739T", + "T9793C", + "C9860T", + "T9907C", + "G9947A", + "A10075G", + "C10120A", + "G10219A", + "T10243C", + "T10252G", + "T10471C", + "A10495G", + "T10558C", + "C10561T", + "A10621T", + "C10654T", + "C10984T", + "A11118T", + "T11254C" + ], + "6k": [ + "V39M" + ], + "E1": [ + "Y373F" + ], + "E2": [ + "A301T", + "V315A" + ], + "E3": [ + "R58K" + ], + "nsP2": [ + "K203R" + ], + "nsP3": [ + "S348P", + "A516T" + ] + }, + "labels": { + "aa": "6k: V39M; E1: Y373F; E2: A301T, V315A; E3: R58K; nsP2: K203R; nsP3: S348P, A516T" + } + }, + "children": [ + { + "name": "KC344507.2", + "node_attrs": { + "div": 0.9265806014141688, + "num_date": { + "value": 1997.4561643835616, + "confidence": [ + 1997.4561643835616, + 1997.4561643835616 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1997", + "confidence": { + "1997": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G344T", + "G1259A", + "A1260C", + "C1367T", + "A1571G", + "T1643G", + "A1994C", + "C2039T", + "G2062A", + "G2246A", + "C2357T", + "C2504T", + "C2507T", + "G2780T", + "C2849T", + "C3317T", + "T3374C", + "C3380T", + "C3383T", + "A3503G", + "T3818C", + "C3869T", + "A4022G", + "C4061T", + "C4106T", + "C4124T", + "C4250T", + "C4307T", + "C4430T", + "A4514T", + "C4886A", + "G5066A", + "A5067G", + "T5370C", + "A5669G", + "C6398T", + "C6897T", + "G6914A", + "C7028T", + "T7187C", + "A7346G", + "A7409G", + "C7620T", + "A8109C", + "C8452T", + "C8518T", + "T8734C", + "G8779A", + "A9019G", + "T9034C", + "C9310T", + "A9589G", + "C9682T", + "C9778T", + "C9907T", + "C10048T", + "C10648T", + "C10699T", + "T11287C" + ], + "CP": [ + "A20V", + "N183T" + ], + "nsP2": [ + "R138K" + ], + "nsP3": [ + "N346D", + "Y447H" + ] + }, + "labels": { + "aa": "CP: A20V, N183T; nsP2: R138K; nsP3: N346D, Y447H" + } + } + }, + { + "name": "NODE_0000071", + "node_attrs": { + "div": 0.9231198514141687, + "num_date": { + "value": 1994.7386831678925, + "confidence": [ + 1994.61992486009, + 1994.7952574700792 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999842008108418 + }, + "entropy": 0.0002264660235818055 + }, + "year": { + "value": "1994", + "confidence": { + "1994": 0.7191301417044931, + "1995": 0.10506679125670894, + "1997": 0.03786545086497886, + "1998": 0.009409629769325757 + }, + "entropy": 1.3880744479831932 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999958075618 + }, + "entropy": 8.506250005156138e-08 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G1290A", + "C2477T", + "G4012T", + "G4187A", + "A5471G", + "G5591A", + "A5759G", + "C6242A", + "A6461G", + "C10366T", + "C10861T" + ], + "nsP1": [ + "V416I" + ], + "nsP2": [ + "R788I" + ] + }, + "labels": { + "aa": "nsP1: V416I; nsP2: R788I" + } + }, + "children": [ + { + "name": "MF590066.1", + "node_attrs": { + "div": 0.9301342914141687, + "num_date": { + "value": 2013.4808219178083, + "confidence": [ + 2013.4808219178083, + 2013.4808219178083 + ] + }, + "author": { + "author": "Juarez,D., Guevara,C., Wiley,M., Torre,A., Palacios,G., Halsey,E.S., Ampuero,S. and Leguia,M.", + "value": "Juarez,D., Guevara,C., Wiley,M., Torre,A., Palacios,G., Halsey,E.S., Ampuero,S. and Leguia,M." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "2013", + "confidence": { + "2013": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C35A", + "T143C", + "G314A", + "C425T", + "G709A", + "A806T", + "C1106T", + "C1133T", + "C1567T", + "C1991T", + "C2171A", + "A2213G", + "A2241T", + "T2588C", + "G2603T", + "G2657T", + "C2949T", + "C3050A", + "T3195C", + "T3281C", + "C3359T", + "T3671C", + "C3774T", + "T3812C", + "A4108G", + "A4136G", + "A4238G", + "C4244T", + "G4463A", + "G4718A", + "C4751T", + "G4904A", + "A4919G", + "T4940A", + "A5034C", + "C5251T", + "C5384A", + "G5396T", + "A5496C", + "A5544C", + "C5582T", + "T5593C", + "C6029T", + "T6044C", + "C6380T", + "C6383T", + "T6410C", + "C6815T", + "C6827T", + "G6872A", + "T7091C", + "C7172T", + "C7316T", + "C7849T", + "C8158T", + "C8194T", + "G8344A", + "C8515T", + "T8536C", + "C8740T", + "C8893T", + "T9055C", + "C9091T", + "C9163T", + "A9205T", + "C9344T", + "C9352T", + "C9397T", + "A9442G", + "A9451C", + "C9643T", + "T9728C", + "C9940T", + "C10468T", + "C10492T", + "G10957A", + "C11119T", + "T11365G" + ], + "nsP1": [ + "R222H", + "A508V" + ], + "nsP2": [ + "S198C", + "E336D" + ], + "nsP3": [ + "K26R", + "T335P", + "S407F", + "S451R", + "V521A" + ] + }, + "labels": { + "aa": "nsP1: R222H, A508V; nsP2: S198C, E336D; nsP3: K26R, T335P, S407F, S451R, V521A" + } + } + }, + { + "name": "NODE_0000072", + "node_attrs": { + "div": 0.9250865114141688, + "num_date": { + "value": 1994.9563588668689, + "confidence": [ + 1994.9164119520085, + 1994.9828639227674 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999999365386427 + }, + "entropy": 1.262181426793592e-06 + }, + "year": { + "value": "1994", + "confidence": { + "1994": 0.8149007503811003, + "1995": 0.1171232976692308, + "1997": 0.013243739276934445, + "1998": 0.008153065360035745 + }, + "entropy": 0.8320389260423431 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999324398 + }, + "entropy": 1.6476934682547915e-09 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A1417T", + "T1967C", + "A2012G", + "C2033T", + "C3146T", + "T3371C", + "C3698A", + "T3756C", + "C3947T", + "G4559A", + "T4833C", + "G5045A", + "G5537A", + "T6518C", + "C7487T", + "T8737A", + "A9037T", + "G9098A", + "C9241T", + "T9529C", + "C9721T", + "G9829A" + ], + "E2": [ + "V179I" + ], + "nsP1": [ + "N458I" + ] + }, + "labels": { + "aa": "E2: V179I; nsP1: N458I" + } + }, + "children": [ + { + "name": "KC344526.1", + "node_attrs": { + "div": 0.9255288014141687, + "num_date": { + "value": 1994.9986301369863, + "confidence": [ + 1994.9739419876405, + 1994.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1994", + "confidence": { + "1994": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1334C", + "A3581T", + "C6704T", + "C7513T", + "A8668G" + ], + "nsP4": [ + "T604I" + ] + }, + "labels": { + "aa": "nsP4: T604I" + } + } + }, + { + "name": "NODE_0000073", + "node_attrs": { + "div": 0.9252600014141688, + "num_date": { + "value": 1995.7390133913748, + "confidence": [ + 1995.2763397939996, + 1995.9584549418407 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999997715853263 + }, + "entropy": 4.310382692400213e-06 + }, + "year": { + "value": "1995", + "confidence": { + "1994": 0.15029109056982443, + "1995": 0.7456339444094393, + "1997": 0.0038161198377210633, + "1998": 0.048457425303134544 + }, + "entropy": 1.0193792704434341 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999992923793 + }, + "entropy": 1.5614561990113406e-08 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T4274C", + "C5564T" + ] + } + }, + "children": [ + { + "name": "KC344490.1", + "node_attrs": { + "div": 0.9258750514141687, + "num_date": { + "value": 1995.9986301369863, + "confidence": [ + 1995.4556121246605, + 1995.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1995", + "confidence": { + "1995": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2312T", + "T3935C", + "C5138T", + "A5144G", + "T5147C", + "T5150C", + "C5723T" + ] + } + } + }, + { + "name": "NODE_0000179", + "node_attrs": { + "div": 0.9252600014141688, + "num_date": { + "value": 1997.6482738916043, + "confidence": [ + 1997.4479474961954, + 1997.7590027345911 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999998608396762 + }, + "entropy": 2.6949215217862446e-06 + }, + "year": { + "value": "1998", + "confidence": { + "1998": 0.9984795130206346 + }, + "entropy": 0.015618146870628187 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999995657346 + }, + "entropy": 9.793883826358134e-09 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T11354G" + ] + } + }, + "children": [ + { + "name": "DQ390224.2", + "node_attrs": { + "div": 0.9264939414141687, + "num_date": { + "value": 1998.0013698630137, + "confidence": [ + 1998.0013698630137, + 1998.898904109589 + ] + }, + "author": { + "author": "Anishchenko,M., Bowen,R.A., Paessler,S., Austgen,L., Greene,I.P. and Weaver,S.C.", + "value": "Anishchenko,M., Bowen,R.A., Paessler,S., Austgen,L., Greene,I.P. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1998", + "confidence": { + "1998": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1535G", + "C2883T", + "A3490G", + "T3935A", + "A4685G", + "A7744T", + "G8341A", + "C8508T", + "C8614T", + "C9025T", + "G9140A", + "T10459C", + "T10849A" + ], + "E2": [ + "G193R" + ], + "E3": [ + "P41L" + ], + "nsP2": [ + "H614R" + ], + "nsP3": [ + "I218M" + ] + }, + "labels": { + "aa": "E2: G193R; E3: P41L; nsP2: H614R; nsP3: I218M" + } + } + }, + { + "name": "KC344504.2", + "node_attrs": { + "div": 0.9261589314141687, + "num_date": { + "value": 1998.0013698630137, + "confidence": [ + 1998.0013698630137, + 1998.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1998", + "confidence": { + "1998": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2927A", + "C3575T", + "G4196A", + "T6191C", + "A6399G", + "T6473C", + "C6635T", + "G7076T", + "T9868C", + "A10036T" + ], + "nsP4": [ + "N233D" + ] + }, + "labels": { + "aa": "nsP4: N233D" + } + } + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000056", + "node_attrs": { + "div": 0.8953639314141688, + "num_date": { + "value": 1937.5023906900092, + "confidence": [ + 1937.2853062518461, + 1937.7496941865231 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.0323216410448838, + "Panama": 0.056220042746035336, + "Peru": 0.031944895733927545, + "Venezuela": 0.8545452044798503 + }, + "entropy": 0.6635688883121253 + }, + "year": { + "value": "1938", + "confidence": { + "1938": 0.30499131858073825, + "1942": 0.04054791341493992, + "1943": 0.03370346274094472, + "1961": 0.018650064646132176 + }, + "entropy": 3.250060860273531 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999985796789671 + }, + "entropy": 2.054441184940235e-05 + }, + "place_of_collection": { + "value": "Aragua" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C278T", + "A305G", + "T536C", + "G680A", + "A1100G", + "A1343G", + "C1742T", + "C2261T", + "C2792T", + "C3080T", + "G3329A", + "T3374G", + "T4541C", + "C4772T", + "A4805C", + "G4874A", + "G5348A", + "A5357C", + "C5867T", + "C6119T", + "T6578C", + "T6971C", + "C7463T", + "C7606T", + "C7699T", + "G7732A", + "A7963G", + "A8230G", + "G8626A", + "T9521A", + "C9892T", + "G10195T", + "C10423T", + "C10426T", + "C10576T", + "C10648T", + "G11039A" + ], + "E1": [ + "A347T" + ], + "E2": [ + "S320T" + ] + }, + "labels": { + "aa": "E1: A347T; E2: S320T" + } + }, + "children": [ + { + "name": "KC344476.1", + "node_attrs": { + "div": 0.9336244614141688, + "num_date": { + "value": 2003.0013698630137, + "confidence": [ + 2003.0013698630137, + 2003.093620825392 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Panama", + "confidence": { + "Panama": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "2003", + "confidence": { + "2003": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Bocas_del_Toro" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26C", + "C65T", + "T266A", + "G293T", + "A335T", + "T371C", + "C426T", + "G497A", + "A524G", + "T545C", + "A626C", + "A674T", + "G716A", + "T758C", + "T770C", + "T773G", + "C788T", + "T935C", + "T981C", + "G1034A", + "C1037T", + "T1052C", + "C1116T", + "G1121A", + "C1151T", + "A1163G", + "C1272T", + "T1304C", + "T1340C", + "A1391G", + "C1412T", + "T1422C", + "C1430T", + "A1442G", + "A1455C", + "G1478A", + "C1502T", + "G1544A", + "T1547C", + "C1604A", + "C1608T", + "C1652T", + "C1697T", + "G1703A", + "C1721T", + "T1733A", + "A1757G", + "C1772A", + "T1811C", + "T1829C", + "C1844T", + "G1859T", + "T1922C", + "C1956T", + "A1973C", + "T1976C", + "C2009T", + "C2014T", + "T2051C", + "C2105T", + "A2106G", + "A2108T", + "A2168G", + "T2291C", + "A2297G", + "T2364C", + "T2429C", + "T2453C", + "C2498T", + "C2615T", + "A2632G", + "G2651A", + "C2690T", + "C2711T", + "G2816A", + "C2886T", + "C2930T", + "C2963T", + "T2966C", + "C2981A", + "G2984A", + "A2987G", + "C3014T", + "C3026T", + "C3044T", + "C3050T", + "G3062A", + "T3156C", + "T3158C", + "T3161C", + "C3166T", + "T3176A", + "A3182G", + "C3200T", + "T3248C", + "A3258T", + "T3281C", + "T3293C", + "C3299T", + "G3302A", + "C3353T", + "A3362G", + "T3371G", + "T3386C", + "A3389G", + "C3407T", + "T3410C", + "T3413C", + "C3417T", + "A3424G", + "C3443T", + "A3449G", + "C3458T", + "T3473C", + "T3509C", + "G3525A", + "T3534C", + "T3548C", + "T3570A", + "G3602A", + "G3611T", + "G3617T", + "C3626T", + "C3674T", + "T3683C", + "C3698T", + "T3737C", + "T3743C", + "C3774T", + "T3800C", + "T3815C", + "C3833T", + "A3855G", + "G3860A", + "C3899T", + "T3920A", + "G3923A", + "G4058A", + "T4088C", + "C4121T", + "G4157A", + "T4169C", + "C4247T", + "G4262A", + "C4304T", + "C4322T", + "C4334T", + "A4400G", + "T4404C", + "G4406A", + "C4538T", + "A4547G", + "T4562C", + "C4569T", + "T4595C", + "C4616T", + "C4621T", + "C4625T", + "C4640T", + "A4736G", + "T4769C", + "C4790T", + "C4841T", + "G4868A", + "T5006C", + "A5033G", + "C5069T", + "T5073C", + "C5077T", + "A5080C", + "T5104C", + "C5123T", + "G5126A", + "A5130G", + "G5131A", + "T5138A", + "C5147T", + "C5153T", + "G5159A", + "G5183A", + "C5184T", + "G5198A", + "G5207T", + "G5210A", + "C5261T", + "A5268G", + "A5296G", + "C5315T", + "C5319T", + "T5320C", + "G5328A", + "T5330C", + "C5333T", + "G5346T", + "A5348T", + "C5350T", + "A5364G", + "T5369C", + "T5384C", + "A5385T", + "A5434T", + "T5450C", + "G5453A", + "T5474C", + "C5480T", + "A5484C", + "C5513T", + "A5538T", + "T5543A", + "T5563C", + "C5568T", + "T5589G", + "G5597A", + "C5603T", + "T5633C", + "T5642C", + "A5645T", + "A5678G", + "T5693C", + "T5720C", + "A5837G", + "T5876C", + "G5897A", + "T5942C", + "T6005C", + "T6011C", + "C6035T", + "C6059T", + "T6074C", + "T6125C", + "A6128G", + "C6144T", + "C6158T", + "C6161A", + "T6167C", + "C6170T", + "C6179T", + "T6197C", + "C6209A", + "A6245G", + "T6272C", + "C6293A", + "A6308T", + "T6323C", + "C6347T", + "C6437T", + "A6479G", + "A6515G", + "T6527C", + "T6531C", + "G6533A", + "A6569G", + "C6620G", + "C6651T", + "A6659C", + "C6671T", + "C6680T", + "G6707T", + "T6758C", + "G6776A", + "C6779T", + "T6788A", + "T6794C", + "G6821T", + "C6839T", + "C6842T", + "C6857T", + "G6887A", + "T6953C", + "T7031C", + "A7034G", + "T7050C", + "C7067T", + "A7082G", + "G7109A", + "G7190A", + "A7202G", + "T7226C", + "A7253G", + "C7275T", + "C7284T", + "T7295C", + "A7310G", + "G7349A", + "C7367A", + "A7376G", + "A7424G", + "C7427T", + "T7436C", + "C7464T", + "T7491C", + "T7508C", + "G7588T", + "G7627A", + "G7714A", + "G7723A", + "A7744G", + "A7763G", + "G7765A", + "G7768A", + "C7795T", + "G7822C", + "G7828A", + "G7855A", + "A7872G", + "C7873T", + "A7897C", + "A7942G", + "T7981G", + "G7996C", + "T8000C", + "A8022C", + "C8038T", + "C8074T", + "T8098C", + "G8101A", + "T8122C", + "T8158C", + "C8161T", + "A8212G", + "C8236T", + "C8260T", + "C8326T", + "C8329T", + "C8353T", + "T8362C", + "C8398T", + "T8419C", + "G8468T", + "A8470C", + "G8524A", + "T8539C", + "C8546T", + "A8551C", + "G8554A", + "A8558C", + "A8563G", + "C8566T", + "C8623T", + "A8653T", + "C8680T", + "T8722C", + "C8743T", + "C8776T", + "C8782T", + "T8785C", + "A8812C", + "C8813T", + "C8815A", + "T8833C", + "T8845C", + "T8854C", + "G8878A", + "A8881T", + "C8893T", + "C8926T", + "C8929T", + "G8935A", + "T8942C", + "T8959C", + "A8974G", + "C8980T", + "T8983G", + "C8989A", + "A8995G", + "G9040A", + "T9052C", + "T9094A", + "G9098A", + "T9100C", + "T9104C", + "C9148T", + "G9157A", + "C9187T", + "C9199T", + "A9205G", + "T9277C", + "A9289G", + "T9331C", + "A9379G", + "T9385A", + "C9394T", + "T9400C", + "A9442G", + "C9454T", + "C9481T", + "G9509A", + "A9532G", + "G9538A", + "A9572C", + "T9634C", + "A9679C", + "G9710T", + "C9720T", + "C9751T", + "T9757C", + "T9775C", + "C9781T", + "C9791A", + "C9850T", + "C9899T", + "G9942A", + "A10061C", + "C10072T", + "A10075G", + "T10084C", + "T10120C", + "T10130C", + "A10171G", + "A10174G", + "C10180T", + "T10214C", + "A10276T", + "C10300T", + "C10402T", + "T10425C", + "A10450G", + "C10465T", + "C10468T", + "C10477T", + "C10485T", + "T10492C", + "G10495A", + "A10513G", + "T10558C", + "T10561C", + "T10570C", + "C10606T", + "A10612G", + "C10624T", + "T10642C", + "G10676T", + "A10726C", + "A10747G", + "A10789G", + "T10856C", + "A10876C", + "A10891T", + "C10903T", + "C10912T", + "C10960T", + "G10981A", + "G10996A", + "A11002G", + "C11028T", + "C11036T", + "C11086T", + "C11095T", + "T11119C", + "T11122A", + "G11125A", + "T11179C", + "C11236A", + "A11257G", + "C11296T", + "C11311T", + "G11328A", + "T11359G", + "G11361A", + "C11364T", + "C11378A" + ], + "6k": [ + "R37K" + ], + "CP": [ + "R68G", + "N104S", + "E154A" + ], + "E1": [ + "Y72H", + "I142T", + "T162I", + "A226S", + "Q242H", + "E292D", + "A343V" + ], + "E2": [ + "Y127H", + "S177R", + "V179I", + "V316I", + "A383S", + "T386I", + "L410I" + ], + "E3": [ + "A28S", + "P54S" + ], + "nsP1": [ + "M471L" + ], + "nsP2": [ + "T122I", + "T153A", + "K328R", + "I446M", + "Y503H", + "T506M", + "T537S", + "N592S", + "V626I", + "L641M", + "E656D", + "I736V" + ], + "nsP3": [ + "T197I", + "S348P", + "T349I", + "E350A", + "L358P", + "R367E", + "Q392H", + "I413V", + "D422G", + "L430S", + "A433T", + "A439S", + "A440V", + "N445D", + "M452L", + "N468I", + "I503F", + "L511P", + "P513S", + "S520A" + ], + "nsP4": [ + "Y597H" + ] + }, + "labels": { + "aa": "6k: R37K; CP: R68G, N104S, E154A; E1: Y72H, I142T, T162I, A226S, Q242H, E292D, A343V; E2: Y127H, S177R, V179I, V316I, A383S, T386I, L410I; E3: A28S, P54S; nsP1: M471L; nsP2: T122I, T153A, K328R, I446M, Y503H, T506M, T537S, N592S, V626I, L641M, E656D, I736V; nsP3: T197I, S348P, T349I, E350A, L358P, R367E, Q392H, I413V, D422G, L430S, A433T, A439S, A440V, N445D, M452L, N468I, I503F, L511P, P513S, S520A; nsP4: Y597H" + } + } + }, + { + "name": "NODE_0000040", + "node_attrs": { + "div": 0.9005354614141688, + "num_date": { + "value": 1937.8757653992866, + "confidence": [ + 1937.6805774881166, + 1938.062575568366 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.031437520009280344, + "Panama": 0.03186774466847213, + "Peru": 0.032079664113845156, + "Venezuela": 0.8880789764305933 + }, + "entropy": 0.534567653437552 + }, + "year": { + "value": "1938", + "confidence": { + "1938": 0.3748879367457079, + "1942": 0.04410913014601771, + "1943": 0.035636261055465336, + "1961": 0.016961652254448758 + }, + "entropy": 3.017170410756882 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999998583723306 + }, + "entropy": 2.375103108826968e-06 + }, + "place_of_collection": { + "value": "Aragua" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T920C", + "G1265A", + "C1718T", + "C2006T", + "C3093T", + "T3245A", + "A3260T", + "G4565A", + "C4886T", + "C5003T", + "G5420A", + "A5515C", + "C5657T", + "A6719G", + "C6833T", + "T7747C", + "A7864G", + "C8704T", + "C8857T", + "C11011T", + "T11074C" + ], + "nsP3": [ + "N495T" + ] + }, + "labels": { + "aa": "nsP3: N495T" + } + }, + "children": [ + { + "name": "NODE_0000041", + "node_attrs": { + "div": 0.9182628414141688, + "num_date": { + "value": 1938.809065568486, + "confidence": [ + 1938.7489341441694, + 1938.8577889202047 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.013702730490389609, + "Panama": 0.00927993216306918, + "Peru": 0.034100473287806105, + "Venezuela": 0.9329709648698898 + }, + "entropy": 0.33853716649351695 + }, + "year": { + "value": "1938", + "confidence": { + "1938": 0.6343925359643442, + "1942": 0.05562472602452123, + "1943": 0.04124729463402235, + "1961": 0.009402776885635771 + }, + "entropy": 1.9494145437472583 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999968915066 + }, + "entropy": 6.39991686000323e-08 + }, + "place_of_collection": { + "value": "Aragua" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26G", + "T272C", + "C326T", + "A1163G", + "G1184A", + "C1301T", + "A1463G", + "T1493C", + "A1571T", + "C1697T", + "A1724T", + "C1841A", + "A1937T", + "A1994T", + "T2051C", + "G2264A", + "A2300T", + "A2489C", + "C2507T", + "G2552A", + "C2648T", + "A2668T", + "G2954T", + "A2993G", + "G3071A", + "A3116T", + "C3230T", + "C3350T", + "G3566A", + "C3659T", + "A3684G", + "C3875T", + "A3914G", + "T3983A", + "C3998T", + "G4187A", + "G4241A", + "A4265G", + "A4313G", + "G4559T", + "G4634A", + "G4958A", + "C5000T", + "C5010A", + "C5018T", + "G5100C", + "T5113A", + "C5192T", + "T5243C", + "C5252T", + "C5309A", + "A5344G", + "G5349A", + "A5490T", + "T5501C", + "T5540C", + "G5577A", + "T5720C", + "A6092G", + "C6144T", + "C6161A", + "A6263T", + "T6272C", + "T6362G", + "C6398T", + "T6455C", + "T6473C", + "G6575A", + "C6725T", + "C6740T", + "C6770A", + "A7382T", + "T7400C", + "A7576G", + "G7764A", + "C7772T", + "A7783G", + "G7819A", + "A7942G", + "T7951C", + "C7955T", + "T7969A", + "C7984T", + "T8080C", + "A8212G", + "C8407T", + "C8632A", + "T8662C", + "G8671A", + "C8692T", + "G8786A", + "T8851C", + "T8869C", + "A8917C", + "C8980T", + "C9169T", + "C9201A", + "G9203A", + "A9253G", + "T9262C", + "C9265T", + "C9314T", + "C9404A", + "T9478C", + "T9529C", + "C9685T", + "T9696C", + "C9718T", + "A9735G", + "T9746G", + "C9781T", + "C9796T", + "C10051T", + "A10270T", + "C10432T", + "C10465T", + "C10522T", + "T10690C", + "A10927T", + "T11062C", + "C11173T", + "A11275G", + "C11331T", + "T11333C", + "T11357C", + "C11407T", + "C11412T", + "C11417T" + ], + "CP": [ + "R68K", + "P71S" + ], + "E2": [ + "E75K", + "T213K", + "A214T", + "V378A", + "K391R", + "S395A" + ], + "nsP2": [ + "E340V", + "I679V" + ], + "nsP3": [ + "A357P", + "V361E", + "E438G", + "A440T", + "S487C", + "A516T" + ] + }, + "labels": { + "aa": "CP: R68K, P71S; E2: E75K, T213K, A214T, V378A, K391R, S395A; nsP2: E340V, I679V; nsP3: A357P, V361E, E438G, A440T, S487C, A516T" + } + }, + "children": [ + { + "name": "NODE_0000042", + "node_attrs": { + "div": 0.9203115214141688, + "num_date": { + "value": 1942.6008669758512, + "confidence": [ + 1942.3351887576446, + 1942.8181889217508 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Colombia": 0.0011430584826677777, + "Peru": 0.9795819046548154, + "Venezuela": 0.017101516226523058 + }, + "entropy": 0.116199794210989 + }, + "year": { + "value": "1942", + "confidence": { + "1938": 0.026533626969204836, + "1942": 0.8049829590356412, + "1943": 0.00521403060072709, + "1971": 0.005394900171938611 + }, + "entropy": 1.2115523925844967 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999923186703 + }, + "entropy": 1.3351581278243782e-06 + }, + "place_of_collection": { + "value": "Piura" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C233T", + "A651G", + "G663T", + "T758C", + "A1351G", + "T1643A", + "C2105T", + "T2174C", + "C2379T", + "C2564T", + "C3053T", + "C3200T", + "C3458T", + "T3779C", + "T3935A", + "T4088C", + "T4424A", + "C4714T", + "C5042T", + "A5106G", + "T5312C", + "T5474C", + "T6026C", + "G6707A", + "T7131C", + "C7154T", + "T7184C", + "A7322G", + "G8053A", + "C8260T", + "C8816T", + "C8922T", + "C9123T", + "G9328A", + "A9712G", + "T9871C", + "C10396T", + "C10792T", + "T10973C", + "C11418T", + "A11437T" + ], + "E1": [ + "S325P" + ], + "E2": [ + "H85Y", + "T120I", + "T187I" + ], + "nsP1": [ + "T203A", + "A207S", + "D436G" + ], + "nsP2": [ + "H244Y" + ], + "nsP3": [ + "A228V", + "I359V" + ] + }, + "labels": { + "aa": "E1: S325P; E2: H85Y, T120I, T187I; nsP1: T203A, A207S, D436G; nsP2: H244Y; nsP3: A228V, I359V" + } + }, + "children": [ + { + "name": "KC344430.1", + "node_attrs": { + "div": 0.9215705814141688, + "num_date": { + "value": 1971.0150684931507, + "confidence": [ + 1971.0150684931507, + 1971.0150684931507 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pfeffer,M., Marriott,K., Kang,W., Kinney,R.M., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pfeffer,M., Marriott,K., Kang,W., Kinney,R.M., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Equus caballus" + }, + "year": { + "value": "1971", + "confidence": { + "1971": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Hoja_Redonda" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1619C", + "C2174T", + "T2379C", + "C2501T", + "G3167A", + "C3779T", + "G4571A", + "A4934G", + "C5476T", + "G6138T", + "A6584G", + "C7184T", + "C7888T", + "C8149G", + "C8170T", + "C8182T", + "G8272T", + "T8922C", + "A9224G", + "T9744A", + "C9791T", + "C9871T", + "T10396C", + "T10792C", + "C11083T" + ], + "E2": [ + "I120T", + "T221A", + "V394D", + "L410F" + ], + "nsP2": [ + "Y244H" + ], + "nsP3": [ + "A482V" + ], + "nsP4": [ + "A146S" + ] + }, + "labels": { + "aa": "E2: I120T, T221A, V394D, L410F; nsP2: Y244H; nsP3: A482V; nsP4: A146S" + } + } + }, + { + "name": "KU059753.1", + "node_attrs": { + "div": 0.9219156614141688, + "num_date": { + "value": 1942.9986301369863, + "confidence": [ + 1942.723716928372, + 1942.9986301369863 + ] + }, + "author": { + "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R., Lin,D., Hari,K. and Weaver,S.C.", + "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R., Lin,D., Hari,K. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Equus asinus x Equus caballus" + }, + "year": { + "value": "1942", + "confidence": { + "1942": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Piura" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G2441A", + "T5506A", + "A7034G", + "A9039G", + "G9108T", + "A9201G", + "G9514A" + ], + "E2": [ + "Q159R", + "S182I", + "K213R" + ], + "nsP3": [ + "L492Q" + ] + }, + "labels": { + "aa": "E2: Q159R, S182I, K213R; nsP3: L492Q" + } + } + } + ] + }, + { + "name": "NODE_0000043", + "node_attrs": { + "div": 0.9223259914141688, + "num_date": { + "value": 1938.9834781678564, + "confidence": [ + 1938.9675571912994, + 1938.9941769382997 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.009682715973863153, + "Peru": 0.01778724405871379, + "Trinidad_and_Tobago": 0.008599624709997785, + "Venezuela": 0.9577629894428529 + }, + "entropy": 0.2361088966137273 + }, + "year": { + "value": "1938", + "confidence": { + "1938": 0.7115316605256601, + "1942": 0.03953933323812685, + "1943": 0.04343589619551119, + "1961": 0.0073853929133637424 + }, + "entropy": 1.6075411266429793 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999536566032 + }, + "entropy": 8.289510043096805e-07 + }, + "place_of_collection": { + "value": "Aragua" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A101G", + "C284T", + "C689T", + "C761T", + "G1259A", + "A1503G", + "A1850T", + "C2501T", + "G2633A", + "C2696T", + "A3104G", + "G3455A", + "C3589T", + "C4031T", + "C4244A", + "A4661G", + "A4733G", + "T4847C", + "C4974T", + "C5058T", + "G5380A", + "G5905A", + "T6167A", + "C6879T", + "C7178T", + "C7389T", + "C7745T", + "C8170T", + "C9003T", + "C9138T", + "G9448A", + "G9616A", + "C9739T", + "G9787A", + "C9791T", + "G9974A", + "C10606T", + "A10711T", + "C10846T", + "C10939T" + ], + "6k": [ + "V48M" + ], + "CP": [ + "P62S" + ], + "E2": [ + "A147V", + "A192V", + "M408I", + "L410F" + ], + "nsP1": [ + "I487V" + ], + "nsP2": [ + "T647M" + ], + "nsP3": [ + "P343S", + "R450K" + ], + "nsP4": [ + "R68K", + "P563S" + ] + }, + "labels": { + "aa": "6k: V48M; CP: P62S; E2: A147V, A192V, M408I, L410F; nsP1: I487V; nsP2: T647M; nsP3: P343S, R450K; nsP4: R68K, P563S" + } + }, + "children": [ + { + "name": "NODE_0000044", + "node_attrs": { + "div": 0.9227865614141688, + "num_date": { + "value": 1942.9893013702408, + "confidence": [ + 1942.8573088203214, + 1943.0243113351014 + ] + }, + "country": { + "value": "Trinidad_and_Tobago", + "confidence": { + "Trinidad_and_Tobago": 0.9999673028171684 + }, + "entropy": 0.0003921674151350095 + }, + "year": { + "value": "1943", + "confidence": { + "1938": 0.0140708440296228, + "1942": 0.002717139860730451, + "1943": 0.8971170122677522, + "1961": 0.0023958952049138293 + }, + "entropy": 0.7102875717150225 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9976392343948681, + "NAm": 0.0023607656051318946 + }, + "entropy": 0.01663770332589218 + }, + "place_of_collection": { + "value": "Trinidad_and_Tobago" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C7208T", + "C9397T", + "T11386C", + "T11409C", + "T11414C", + "C11418T" + ] + } + }, + "children": [ + { + "name": "L01442.2", + "node_attrs": { + "div": 0.9227890414141688, + "num_date": { + "value": 1943.0013698630137, + "confidence": [ + 1943.0013698630137, + 1943.0489278608034 + ] + }, + "author": { + "author": "Kinney,R.M., Johnson,B.J., Brown,V.L. and Trent,D.W.", + "value": "Kinney,R.M., Johnson,B.J., Brown,V.L. and Trent,D.W." + }, + "country": { + "value": "Trinidad_and_Tobago", + "confidence": { + "Trinidad_and_Tobago": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1943", + "confidence": { + "1938": 0.015917411292982943, + "1942": 0.004726459218561146, + "1943": 0.805228805789935, + "1961": 0.004582048440394215 + }, + "entropy": 1.2288381670362027 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9975219511558852, + "NAm": 0.0024780488441148445 + }, + "entropy": 0.017343972237208776 + }, + "place_of_collection": { + "value": "Trinidad_and_Tobago" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "J04332.1", + "node_attrs": { + "div": 0.9233112814141688, + "num_date": { + "value": 1943.044982682839, + "confidence": [ + 1943.0013698630137, + 1943.1706923191 + ] + }, + "author": { + "author": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W.", + "value": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W." + }, + "country": { + "value": "Trinidad_and_Tobago", + "confidence": { + "Trinidad_and_Tobago": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1943", + "confidence": { + "1943": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9975219511558852, + "NAm": 0.0024780488441148445 + }, + "entropy": 0.017343972237208776 + }, + "place_of_collection": { + "value": "Trinidad_and_Tobago" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G106C", + "C107G", + "G1533C", + "C1534G", + "C1696A", + "A4809T" + ], + "nsP1": [ + "S21T", + "A497R" + ], + "nsP2": [ + "A16D" + ], + "nsP3": [ + "T260S" + ] + }, + "labels": { + "aa": "nsP1: S21T, A497R; nsP2: A16D; nsP3: T260S" + } + } + } + ] + }, + { + "name": "NODE_0000045", + "node_attrs": { + "div": 0.9223671914141688, + "num_date": { + "value": 1938.9881714886576, + "confidence": [ + 1938.975658405665, + 1938.995782463948 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.006835843674750562, + "Peru": 0.006639378823937452, + "Trinidad_and_Tobago": 0.002928985610855958, + "Venezuela": 0.9812557816037155 + }, + "entropy": 0.11937307593756119 + }, + "year": { + "value": "1938", + "confidence": { + "1938": 0.7974045333067746, + "1942": 0.026082354723391682, + "1943": 0.028577260141866585, + "1961": 0.005413673865395814 + }, + "entropy": 1.2186712724901574 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999936024356 + }, + "entropy": 1.2710064030327074e-07 + }, + "place_of_collection": { + "value": "Aragua" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "KJ410017.1", + "node_attrs": { + "div": 0.9244927614141688, + "num_date": { + "value": 1981.0013698630137, + "confidence": [ + 1981.0013698630137, + 1981.898904109589 + ] + }, + "author": { + "author": "Medina,G., Garzaro,D.J., Barrios,M., Auguste,A.J., Weaver,S.C. and Pujol,F.H.", + "value": "Medina,G., Garzaro,D.J., Barrios,M., Auguste,A.J., Weaver,S.C. and Pujol,F.H." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "hamster" + }, + "year": { + "value": "1981", + "confidence": { + "1981": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Goajira" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1696A", + "T5231A", + "A5233T", + "C5239A", + "C5243A", + "T5246G", + "T5248C", + "T5250G", + "T5252G", + "G5254A", + "T5256C", + "C5257A", + "T5262A", + "G5263C", + "G5264A", + "T5265G", + "T5276C", + "G8584T", + "C8816T", + "C8922G", + "T9138A", + "C9450T", + "T10481A", + "A10633T" + ], + "E1": [ + "L161I" + ], + "E2": [ + "K7N", + "H85Y", + "T120R", + "V192D", + "T296I" + ], + "nsP2": [ + "A16D" + ], + "nsP3": [ + "H401L", + "P403Q", + "V406A", + "S407A", + "S408N", + "S409Q", + "W411T", + "S412A" + ] + }, + "labels": { + "aa": "E1: L161I; E2: K7N, H85Y, T120R, V192D, T296I; nsP2: A16D; nsP3: H401L, P403Q, V406A, S407A, S408N, S409Q, W411T, S412A" + } + } + }, + { + "name": "NODE_0000046", + "node_attrs": { + "div": 0.9225626514141688, + "num_date": { + "value": 1938.9960268958905, + "confidence": [ + 1938.989114336161, + 1938.997829139726 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.005073151360944931, + "Peru": 0.002333070731168165, + "Venezuela": 0.9909916456345621 + }, + "entropy": 0.06204912234666317 + }, + "year": { + "value": "1938", + "confidence": { + "1938": 0.8931477982713123, + "1942": 0.012952617746191428, + "1943": 0.014151020774155232, + "1961": 0.002974200459227948 + }, + "entropy": 0.7202993261131315 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999976260145 + }, + "entropy": 4.951624279758681e-08 + }, + "place_of_collection": { + "value": "Aragua" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T11408C", + "T11413C" + ] + } + }, + "children": [ + { + "name": "KC344516.1", + "node_attrs": { + "div": 0.9225638014141688, + "num_date": { + "value": 1938.9979971940388, + "confidence": [ + 1938.992893994243, + 1938.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Equus ferus caballus" + }, + "year": { + "value": "1938", + "confidence": { + "1938": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Aragua" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000047", + "node_attrs": { + "div": 0.9229113614141689, + "num_date": { + "value": 1967.8266872079607, + "confidence": [ + 1967.0644702233262, + 1967.997829139726 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9989651899076325, + "Venezuela": 0.0010328996708192132 + }, + "entropy": 0.008164103109859206 + }, + "year": { + "value": "1967", + "confidence": { + "1967": 0.9988360455859503 + }, + "entropy": 0.010865052725929563 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999968348 + }, + "entropy": 8.510959282215004e-11 + }, + "place_of_collection": { + "value": "Cali" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C708T", + "A4151G", + "A7034G", + "A10453G" + ], + "nsP1": [ + "R222C" + ] + }, + "labels": { + "aa": "nsP1: R222C" + } + }, + "children": [ + { + "name": "KR260736.1", + "node_attrs": { + "div": 0.9230863914141688, + "num_date": { + "value": 1967.9358782386735, + "confidence": [ + 1967.0013698630137, + 1967.9986301369863 + ] + }, + "author": { + "author": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", + "value": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Equus ferus" + }, + "year": { + "value": "1967", + "confidence": { + "1967": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Valle_del_Cauca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C4709A", + "C7241T" + ] + } + } + }, + { + "name": "KC344485.2", + "node_attrs": { + "div": 0.9229125114141689, + "num_date": { + "value": 1967.846321575973, + "confidence": [ + 1967.0013698630137, + 1967.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Equus ferus caballus" + }, + "year": { + "value": "1967", + "confidence": { + "1967": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Cali" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000189", + "node_attrs": { + "div": 0.9229113614141689, + "num_date": { + "value": 1968.6970493530148, + "confidence": [ + 1968.6085607524265, + 1968.753853646466 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.1588461244964861, + "Guatemala": 0.01848624042250143, + "Peru": 0.004004242149247872, + "Venezuela": 0.8149405381728835 + }, + "entropy": 0.5802678812531937 + }, + "year": { + "value": "1969", + "confidence": { + "1967": 0.1473724905028289, + "1968": 0.28279820426964364, + "1969": 0.5356504813595068, + "1973": 0.005915341389794049 + }, + "entropy": 1.2038961193521 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999996694051 + }, + "entropy": 7.54552555841647e-09 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "NODE_0000054", + "node_attrs": { + "div": 0.9232596614141688, + "num_date": { + "value": 1968.7726784587837, + "confidence": [ + 1968.7283555549302, + 1968.8000652134656 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.009695909705842276, + "Venezuela": 0.9897991496204729 + }, + "entropy": 0.059455769992757056 + }, + "year": { + "value": "1969", + "confidence": { + "1967": 0.09225368128541077, + "1968": 0.3504199595544584, + "1969": 0.5286963272042823, + "1973": 0.00582964034992649 + }, + "entropy": 1.1217287227305208 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999996289805 + }, + "entropy": 8.425622246417697e-09 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2024T", + "C3752T", + "A5471G", + "C6272T" + ] + } + }, + "children": [ + { + "name": "KU978806.1", + "node_attrs": { + "div": 0.9267794514141688, + "num_date": { + "value": 1973.817808219178, + "confidence": [ + 1973.817808219178, + 1973.817808219178 + ] + }, + "author": { + "author": "Guerbois,M., Forrester,N.L., Guzman,H., Tesh,R.B., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", + "value": "Guerbois,M., Forrester,N.L., Guzman,H., Tesh,R.B., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1973", + "confidence": { + "1973": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A1C", + "T2C", + "G3A", + "A25T", + "T95G", + "C752T", + "C1625T", + "C1793T", + "T2369C", + "T2504C", + "T2825C", + "C2922T", + "G3107A", + "T3470A", + "T3883C", + "C4838T", + "C5310T", + "C5317A", + "G5584A", + "G6353A", + "C7037A", + "C7214T", + "A7560T", + "C7728A", + "G7790A", + "G7801A", + "A8443G", + "T8839C", + "C8922A", + "G9142T", + "A9226G", + "A9616C", + "G9947A", + "C10240T", + "T10507A", + "A10582G", + "C10690T", + "T10798C", + "T11388C", + "T11403A" + ], + "6k": [ + "V39M" + ], + "CP": [ + "A56E", + "G77R" + ], + "E2": [ + "T120K" + ], + "nsP2": [ + "V745A" + ], + "nsP3": [ + "L427F", + "T429N", + "S518N" + ] + }, + "labels": { + "aa": "6k: V39M; CP: A56E, G77R; E2: T120K; nsP2: V745A; nsP3: L427F, T429N, S518N" + } + } + }, + { + "name": "NODE_0000055", + "node_attrs": { + "div": 0.9236097814141688, + "num_date": { + "value": 1968.8146496913662, + "confidence": [ + 1968.7964852928014, + 1968.8205441267542 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9998806174840419 + }, + "entropy": 0.0012092641980534751 + }, + "year": { + "value": "1969", + "confidence": { + "1967": 0.0403796686898167, + "1968": 0.4237533502308436, + "1969": 0.5217038221349201, + "1973": 0.002880207766930961 + }, + "entropy": 0.9405067515189429 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999273161 + }, + "entropy": 1.76748810547778e-09 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G5240A", + "C6293T", + "G7813A", + "G8559A" + ], + "E3": [ + "R58K" + ] + }, + "labels": { + "aa": "E3: R58K" + } + }, + "children": [ + { + "name": "KU059754.1", + "node_attrs": { + "div": 0.9236985114141688, + "num_date": { + "value": 1968.8210382513662, + "confidence": [ + 1968.8210382513662, + 1968.8210382513662 + ] + }, + "author": { + "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R.B., Lin,D., Hari,K. and Weaver,S.C.", + "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R.B., Lin,D., Hari,K. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1968", + "confidence": { + "1968": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "La_Guajira" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A7481T" + ], + "nsP4": [ + "K593N" + ] + }, + "labels": { + "aa": "nsP4: K593N" + } + } + }, + { + "name": "KU059755.1", + "node_attrs": { + "div": 0.9245699114141688, + "num_date": { + "value": 1969.8013698630136, + "confidence": [ + 1969.8013698630136, + 1969.8013698630136 + ] + }, + "author": { + "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", + "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1969", + "confidence": { + "1969": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A1G", + "T2C", + "C458T", + "C3119T", + "G5237T", + "C7148T", + "T7437A", + "C7817A", + "C9397A", + "C9714T", + "A9790G" + ], + "CP": [ + "Q86K" + ], + "E2": [ + "F278L", + "A384V" + ], + "nsP4": [ + "S579T" + ] + }, + "labels": { + "aa": "CP: Q86K; E2: F278L, A384V; nsP4: S579T" + } + } + } + ] + } + ] + }, + { + "name": "NODE_0000192", + "node_attrs": { + "div": 0.9229113614141689, + "num_date": { + "value": 1969.7264812649767, + "confidence": [ + 1969.5870166944676, + 1969.8415916876686 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.5610058027701417, + "Peru": 0.0759584418563913, + "USA": 0.08315111490975245, + "Venezuela": 0.22676392745238852 + }, + "entropy": 1.2591667515181102 + }, + "year": { + "value": "1969", + "confidence": { + "1967": 0.02442086850700416, + "1968": 0.05675499089354835, + "1969": 0.8146659092637163, + "1971": 0.04024815518635993 + }, + "entropy": 0.9315826610625016 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999974926549 + }, + "entropy": 5.216091142359965e-08 + }, + "place_of_collection": { + "value": "Guatemala" + } + }, + "branch_attrs": { + "mutations": {} + }, + "children": [ + { + "name": "NODE_0000048", + "node_attrs": { + "div": 0.9237868714141688, + "num_date": { + "value": 1969.9428128137793, + "confidence": [ + 1969.8683134427506, + 1969.9874056281965 + ] + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 0.7444899196181216, + "Peru": 0.027911188482778806, + "USA": 0.11449913235268831, + "Venezuela": 0.0935208256260729 + }, + "entropy": 0.883999739235176 + }, + "year": { + "value": "1969", + "confidence": { + "1967": 0.009227810748969016, + "1968": 0.02693334087241368, + "1969": 0.8850969553936904, + "1971": 0.04989727829524917 + }, + "entropy": 0.596189235510195 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999538088646 + }, + "entropy": 8.263794878482615e-07 + }, + "place_of_collection": { + "value": "Guatemala" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T533C", + "C5201T", + "C7154T", + "T8437C", + "T9796C", + "T11407C", + "C11408T", + "T11412C", + "C11413T", + "T11417C" + ] + } + }, + "children": [ + { + "name": "KC344505.2", + "node_attrs": { + "div": 0.9240472914141689, + "num_date": { + "value": 1969.9986301369863, + "confidence": [ + 1969.930930900797, + 1969.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Guatemala", + "confidence": { + "Guatemala": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1969", + "confidence": { + "1969": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Guatemala" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C29T", + "T3656C", + "T8964C" + ], + "E2": [ + "V134A" + ] + }, + "labels": { + "aa": "E2: V134A" + } + } + }, + { + "name": "AF069903.1", + "node_attrs": { + "div": 0.9254526314141688, + "num_date": { + "value": 1971.0013698630137, + "confidence": [ + 1971.0013698630137, + 1971.898904109589 + ] + }, + "author": { + "author": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W.", + "value": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W." + }, + "country": { + "value": "USA", + "confidence": { + "USA": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1971", + "confidence": { + "1971": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9993739618951847 + }, + "entropy": 0.005243561338279622 + }, + "place_of_collection": { + "value": "Texas" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1394T", + "C2609T", + "T2849C", + "A3890G", + "T4373C", + "T6143C", + "T7448C", + "C7771T", + "T7849C", + "C9177A", + "A9201G", + "C9559T", + "G9568A", + "C9987T", + "T10354C", + "G10549A", + "G10714T", + "C11200T", + "A11297G" + ], + "6k": [ + "A52V" + ], + "E1": [ + "M433V" + ], + "E2": [ + "T205K", + "K213R" + ] + }, + "labels": { + "aa": "6k: A52V; E1: M433V; E2: T205K, K213R" + } + } + } + ] + }, + { + "name": "NODE_0000051", + "node_attrs": { + "div": 0.9248454914141688, + "num_date": { + "value": 1972.9353158863994, + "confidence": [ + 1972.7893813499834, + 1973.4494972085101 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Ecuador": 0.03220186742948905, + "Guatemala": 0.021530099826376416, + "Peru": 0.9267187822459351, + "Venezuela": 0.008881097521629194 + }, + "entropy": 0.374362840597982 + }, + "year": { + "value": "1973", + "confidence": { + "1969": 0.022608562846099228, + "1972": 0.0038983067103974083, + "1973": 0.8906485461467724, + "1977": 0.014652709529537226 + }, + "entropy": 0.7108480019128016 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999952509595 + }, + "entropy": 9.576393489801331e-08 + }, + "place_of_collection": { + "value": "Loreto" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T467C", + "C692T", + "T1194C", + "T1847C", + "C1956T", + "C2014T", + "G2306A", + "C2690T", + "C3527T", + "C4069T", + "T4373C", + "C5056T", + "A5124T", + "T5509C", + "A6515T", + "T6833C", + "G7349A", + "T8200C", + "T8320C", + "A8923C", + "C9806T", + "C11086T" + ], + "E2": [ + "L415F" + ], + "nsP2": [ + "T122I" + ], + "nsP3": [ + "T13M", + "P342L", + "R365W", + "V493A" + ] + }, + "labels": { + "aa": "E2: L415F; nsP2: T122I; nsP3: T13M, P342L, R365W, V493A" + } + }, + "children": [ + { + "name": "KC344517.1", + "node_attrs": { + "div": 0.9280223514141688, + "num_date": { + "value": 1977.0013698630137, + "confidence": [ + 1977.0013698630137, + 1977.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Ecuador", + "confidence": { + "Ecuador": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1977", + "confidence": { + "1977": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Ecuador" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T266C", + "T657C", + "C807T", + "T2089C", + "C2252T", + "C3086A", + "G3305A", + "A3994G", + "G4151A", + "G4679A", + "T4840C", + "G4952A", + "C5029T", + "C5251T", + "G5453A", + "T5527C", + "C5569A", + "T5657C", + "T5693G", + "T5735A", + "A5839C", + "C6732T", + "A6974G", + "A7253C", + "T7478C", + "T7590C", + "A8002G", + "T8536C", + "T8539A", + "A8541T", + "C8815A", + "C8836T", + "T8962A", + "C9850T", + "C10824T", + "C10984T" + ], + "CP": [ + "M10T" + ], + "E1": [ + "S275L" + ], + "E3": [ + "K52M" + ], + "nsP2": [ + "V147A", + "N782S" + ], + "nsP3": [ + "I270T", + "T333I", + "S407F", + "V499A", + "P513Q", + "D554E" + ], + "nsP4": [ + "H11Q", + "E46A" + ] + }, + "labels": { + "aa": "CP: M10T; E1: S275L; E3: K52M; nsP2: V147A, N782S; nsP3: I270T, T333I, S407F, V499A, P513Q, D554E; nsP4: H11Q, E46A" + } + } + }, + { + "name": "NODE_0000052", + "node_attrs": { + "div": 0.9252746114141688, + "num_date": { + "value": 1972.9943261329795, + "confidence": [ + 1972.9347104830301, + 1973.537143262978 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 0.9999403710745844 + }, + "entropy": 0.0007296179294987274 + }, + "year": { + "value": "1973", + "confidence": { + "1973": 0.9995399394831443 + }, + "entropy": 0.005371667136141176 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999827155 + }, + "entropy": 4.436411896974707e-10 + }, + "place_of_collection": { + "value": "Loreto" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A810C", + "C2850T", + "T6368C", + "A7559G", + "T8122C" + ] + } + }, + "children": [ + { + "name": "KC344483.2", + "node_attrs": { + "div": 0.9253628414141688, + "num_date": { + "value": 1973.0013698630137, + "confidence": [ + 1973.0013698630137, + 1973.5046927100295 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Equus ferus caballus" + }, + "year": { + "value": "1973", + "confidence": { + "1973": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Loreto" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2107T" + ], + "nsP2": [ + "T153I" + ] + }, + "labels": { + "aa": "nsP2: T153I" + } + } + }, + { + "name": "KU059756.1", + "node_attrs": { + "div": 0.9260594914141688, + "num_date": { + "value": 1973.2067160640308, + "confidence": [ + 1973.0013698630137, + 1973.9986301369863 + ] + }, + "author": { + "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", + "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Equus africanus asinus" + }, + "year": { + "value": "1973", + "confidence": { + "1973": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IAB_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Loreto" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1394T", + "G1431A", + "C1949T", + "A2066G", + "C8038T", + "T8695C", + "G9216A", + "C10468T", + "G11299A" + ], + "E1": [ + "M433I" + ], + "E2": [ + "S218N" + ], + "nsP1": [ + "G463R" + ] + }, + "labels": { + "aa": "E1: M433I; E2: S218N; nsP1: G463R" + } + } + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000011", + "node_attrs": { + "div": 0.9101709914141688, + "num_date": { + "value": 1960.5589830034685, + "confidence": [ + 1960.3670267981108, + 1960.708746278573 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.8252633968867077, + "Venezuela": 0.17401031324536156 + }, + "entropy": 0.46978638756102 + }, + "year": { + "value": "1960", + "confidence": { + "1960": 0.4588971351669979, + "1961": 0.18152938059316906, + "1962": 0.14207623074797865, + "1963": 0.006381918159565746 + }, + "entropy": 2.0984822425702405 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999801459771 + }, + "entropy": 3.719603243593597e-07 + }, + "place_of_collection": { + "value": "Cuninamarca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C353T", + "T356C", + "T371C", + "G509A", + "T545C", + "A731G", + "C755T", + "T1139C", + "C1190T", + "T1304C", + "G1349A", + "T1458C", + "A1568C", + "C1694T", + "G1736A", + "A1757G", + "T1761C", + "C1772T", + "C2105T", + "A2168G", + "A2213G", + "T2291C", + "T2429C", + "T2453C", + "C2510T", + "A2555G", + "C2579T", + "A2632G", + "C2681T", + "C2696A", + "T2813C", + "T2849C", + "C2906T", + "C2933T", + "C2963T", + "C3056T", + "G3062A", + "A3095G", + "C3113T", + "T3161C", + "C3296T", + "G3374A", + "T3413C", + "C3443T", + "T3534C", + "C3552T", + "G3610A", + "C3647T", + "T3671C", + "A3677T", + "C3698T", + "C3716T", + "T3737C", + "C3752T", + "T3800C", + "T4088C", + "A4547G", + "G4580A", + "C4625T", + "C4709T", + "A4754T", + "T4769C", + "G4868A", + "A4988G", + "C5042A", + "A5057G", + "A5106G", + "C5110A", + "A5119C", + "G5120A", + "G5141A", + "C5153T", + "C5174T", + "T5384C", + "G5453A", + "A5573C", + "T5593C", + "G5597A", + "C5603T", + "C5615T", + "T5693C", + "C5766T", + "T5841C", + "T5862C", + "A5864G", + "C5993T", + "C6035T", + "C6041T", + "T6074C", + "T6084C", + "G6107A", + "C6170T", + "A6200G", + "A6251G", + "T6323C", + "G6533A", + "A6656G", + "A6683G", + "C6687T", + "G6707T", + "C6770T", + "C6779T", + "T6794C", + "C6815T", + "C6878T", + "T6884A", + "T6932A", + "T6953C", + "T6989C", + "T7025C", + "T7031C", + "G7052A", + "A7058G", + "G7124T", + "C7154T", + "T7163C", + "T7184C", + "T7187C", + "T7328C", + "G7349A", + "T7352C", + "C7373T", + "C7609T", + "A7780G", + "A7840G", + "A7866G", + "T8017C", + "G8053A", + "A8131G", + "A8146G", + "C8170T", + "C8260T", + "T8350A", + "C8353T", + "T8437C", + "G8554A", + "C8566T", + "C8737T", + "C8752A", + "T8818C", + "C8860T", + "G8935A", + "A9028G", + "G9328A", + "T9331C", + "A9379G", + "C9454T", + "A9535G", + "G9619A", + "A9790G", + "C9922T", + "G9942A", + "C9958A", + "A10075G", + "T10120C", + "C10204T", + "T10354C", + "T10366C", + "G10495A", + "T10561C", + "A10747G", + "T10759C", + "C10810T", + "C10960T", + "T11059C", + "T11122C", + "T11158C", + "A11251G" + ], + "6k": [ + "R37K" + ], + "CP": [ + "N102S" + ], + "nsP2": [ + "K328R", + "R654Q" + ], + "nsP3": [ + "D337E", + "I359V", + "T360N", + "E363A", + "V521A" + ] + }, + "labels": { + "aa": "6k: R37K; CP: N102S; nsP2: K328R, R654Q; nsP3: D337E, I359V, T360N, E363A, V521A" + } + }, + "children": [ + { + "name": "NODE_0000010", + "node_attrs": { + "div": 0.9187765514141688, + "num_date": { + "value": 1962.942822395454, + "confidence": [ + 1962.8716730216188, + 1962.9969812628206 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.19125390976232537, + "Venezuela": 0.8087454136148002 + }, + "entropy": 0.4880477804185199 + }, + "year": { + "value": "1962", + "confidence": { + "1962": 0.9990227143507161 + }, + "entropy": 0.009472210695122867 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999885543496 + }, + "entropy": 2.2073487828402905e-07 + }, + "place_of_collection": { + "value": "Zulia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G98A", + "T422A", + "C458T", + "G464A", + "T695C", + "T1422C", + "A1442G", + "A1511G", + "G1541A", + "T1560C", + "C1568T", + "G1593T", + "T1922C", + "G2069A", + "C2085T", + "C2141T", + "A2165T", + "A2216G", + "C2498T", + "T2594C", + "A2696G", + "C2930T", + "T2972C", + "T3158C", + "C3321T", + "T3341C", + "T3386C", + "A3416G", + "C3589A", + "T3593C", + "C3626T", + "A3678G", + "T3689C", + "C3780T", + "A3839G", + "T3904A", + "T3920A", + "T4100C", + "C4213T", + "G4215A", + "C4226T", + "T4274G", + "C4535A", + "T4709A", + "A4793G", + "C5055T", + "C5134T", + "C5238T", + "T5300C", + "G5324T", + "T5369C", + "T5395G", + "A5423C", + "T5450A", + "C5479A", + "A5828G", + "C5915T", + "C6077T", + "C6095T", + "T6113C", + "C6635T", + "G6650A", + "T6800A", + "T6878C", + "C7214T", + "T7304C", + "C7747T", + "G7759T", + "T7834C", + "A7883C", + "C8243A", + "C8401T", + "C8438G", + "C8758T", + "C8770T", + "A8913G", + "C8989A", + "T9031C", + "G9098A", + "C9138T", + "T9139C", + "C9152T", + "G9164A", + "G9190A", + "C9201A", + "A9337G", + "C9562T", + "T9802C", + "T10214A", + "C10300T", + "C10303T", + "C10354T", + "A10414G", + "T10481C", + "C10523A", + "C10525A", + "C10846T", + "C11366T" + ], + "CP": [ + "T108P" + ], + "E1": [ + "Y72N" + ], + "E2": [ + "D117G", + "V179I", + "A192V", + "E201K", + "T213K" + ], + "E3": [ + "Q18E" + ], + "nsP1": [ + "V517F" + ], + "nsP2": [ + "T647K", + "I677V", + "L752H" + ], + "nsP3": [ + "A61V", + "A62T", + "P342S", + "T368M", + "P403S", + "E431D", + "L455R", + "P483H" + ] + }, + "labels": { + "aa": "CP: T108P; E1: Y72N; E2: D117G, V179I, A192V, E201K, T213K; E3: Q18E; nsP1: V517F; nsP2: T647K, I677V, L752H; nsP3: A61V, A62T, P342S, T368M, P403S, E431D, L455R, P483H" + } + }, + "children": [ + { + "name": "KC344528.1", + "node_attrs": { + "div": 0.9189524914141688, + "num_date": { + "value": 1962.9986301369863, + "confidence": [ + 1962.926499401107, + 1962.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1962", + "confidence": { + "1962": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Zulia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T3620C", + "G9158A" + ], + "E2": [ + "E199K" + ] + }, + "labels": { + "aa": "E2: E199K" + } + } + }, + { + "name": "U55342.2", + "node_attrs": { + "div": 0.9188650514141689, + "num_date": { + "value": 1962.978606572466, + "confidence": [ + 1962.9113745584852, + 1962.9986301369863 + ] + }, + "author": { + "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", + "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1962", + "confidence": { + "1962": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9998815966877641 + }, + "entropy": 0.0011889296487188775 + }, + "place_of_collection": { + "value": "La_Guajira" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T6182G" + ] + } + } + }, + { + "name": "NODE_0000008", + "node_attrs": { + "div": 0.9193691314141688, + "num_date": { + "value": 1963.6078265460544, + "confidence": [ + 1963.5479663843012, + 1963.6531339097107 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9994390608227719 + }, + "entropy": 0.004769440422008936 + }, + "year": { + "value": "1963", + "confidence": { + "1961": 0.0019431552914068952, + "1962": 0.10788078688250068, + "1963": 0.7319249721139041, + "1964": 0.1292339331756962 + }, + "entropy": 0.9559541176007802 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999991373351595 + }, + "entropy": 0.00010921897568656195 + }, + "place_of_collection": { + "value": "Miranda_State" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T13A", + "A476G", + "A5453G", + "T5469C", + "C7312T", + "C9622T", + "A10306G" + ], + "nsP3": [ + "S480P" + ], + "nsP4": [ + "A537V" + ] + }, + "labels": { + "aa": "nsP3: S480P; nsP4: A537V" + } + }, + "children": [ + { + "name": "U55345.2", + "node_attrs": { + "div": 0.9195451014141688, + "num_date": { + "value": 1964.3948087431695, + "confidence": [ + 1964.3948087431695, + 1964.3948087431695 + ] + }, + "author": { + "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", + "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1964", + "confidence": { + "1964": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9995258488613288 + }, + "entropy": 0.004103184141697807 + }, + "place_of_collection": { + "value": "Monagas" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C3941T", + "G4049A" + ] + } + } + }, + { + "name": "NODE_0000000", + "node_attrs": { + "div": 0.9195664014141688, + "num_date": { + "value": 1963.65361697845, + "confidence": [ + 1963.6219113751326, + 1963.6635834794522 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9999996883308115 + }, + "entropy": 4.984906166542076e-06 + }, + "year": { + "value": "1963", + "confidence": { + "1963": 0.9981787284743295, + "1964": 0.0010196280669503251 + }, + "entropy": 0.015765268570794425 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999988960874851 + }, + "entropy": 0.0001370403516067356 + }, + "place_of_collection": { + "value": "Miranda_State" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C5350T", + "T7229C" + ], + "nsP3": [ + "A440V" + ] + }, + "labels": { + "aa": "nsP3: A440V" + } + }, + "children": [ + { + "name": "L04653.1", + "node_attrs": { + "div": 0.9209711414141688, + "num_date": { + "value": 1963.9245495052558, + "confidence": [ + 1963.844570520965, + 1963.9986301369863 + ] + }, + "author": { + "author": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W.", + "value": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1963", + "confidence": { + "1963": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9998286005207595 + }, + "entropy": 0.0016576777010759902 + }, + "place_of_collection": { + "value": "Miranda_State" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A422T", + "A1571T", + "T2051C", + "T2579C", + "A2668T", + "C2947T", + "C4100T", + "G4187A", + "T4213C", + "A4215G", + "T4226C", + "G4241A", + "C4244A", + "A5344G", + "T6663G", + "G9158A" + ], + "E2": [ + "E199K" + ], + "nsP2": [ + "E340V", + "T433I" + ], + "nsP3": [ + "V61A", + "T62A", + "E438G" + ], + "nsP4": [ + "Y321D" + ] + }, + "labels": { + "aa": "E2: E199K; nsP2: E340V, T433I; nsP3: V61A, T62A, E438G; nsP4: Y321D" + } + } + }, + { + "name": "AF375051.1", + "node_attrs": { + "div": 0.9195675514141688, + "num_date": { + "value": 1963.663965707024, + "confidence": [ + 1963.5821917808219, + 1963.664383561644 + ] + }, + "author": { + "author": "Brault,A.C., Powers,A.M., Medina,G., Wang,E., Kang,W., Salas,R.A., De Siger,J. and Weaver,S.C.", + "value": "Brault,A.C., Powers,A.M., Medina,G., Wang,E., Kang,W., Salas,R.A., De Siger,J. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1963", + "confidence": { + "1963": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9998705741869454 + }, + "entropy": 0.0012880894351150226 + }, + "place_of_collection": { + "value": "Miranda_State" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000200", + "node_attrs": { + "div": 0.9195664014141688, + "num_date": { + "value": 1976.0013259605962, + "confidence": [ + 1975.9764123254135, + 1976.8886613074828 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.999852202369377 + }, + "entropy": 0.0016656743382738608 + }, + "year": { + "value": "1976", + "confidence": { + "1963": 0.003351461547829435, + "1969": 0.0032432362842217313, + "1974": 0.003949275284845217, + "1976": 0.8928707227910584 + }, + "entropy": 0.7493817978034375 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999083952704 + }, + "entropy": 1.5761290876371687e-06 + }, + "place_of_collection": { + "value": "Delta_Amacuso" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A9234T" + ], + "E2": [ + "E224V" + ] + }, + "labels": { + "aa": "E2: E224V" + } + }, + "children": [ + { + "name": "KC344512.1", + "node_attrs": { + "div": 0.9196549114141688, + "num_date": { + "value": 1976.0013661202186, + "confidence": [ + 1976.0013661202186, + 1976.896649069171 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito" + }, + "year": { + "value": "1976", + "confidence": { + "1976": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Delta_Amacuso" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "NODE_0000003", + "node_attrs": { + "div": 0.9196550314141688, + "num_date": { + "value": 1995.3445735776725, + "confidence": [ + 1995.2750159963152, + 1995.3792599769392 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9999962340676862 + }, + "entropy": 5.554164802720878e-05 + }, + "year": { + "value": "1995", + "confidence": { + "1995": 0.9994054713529047 + }, + "entropy": 0.007255724342598578 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999960420699 + }, + "entropy": 8.053215952707658e-08 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C3407T", + "T9234A" + ], + "E2": [ + "V224E" + ] + }, + "labels": { + "aa": "E2: V224E" + } + }, + "children": [ + { + "name": "NODE_0000004", + "node_attrs": { + "div": 0.9200055114141689, + "num_date": { + "value": 1995.7064538844609, + "confidence": [ + 1995.5623572784352, + 1995.7082191780821 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.999999963878804 + }, + "entropy": 6.892023375049715e-07 + }, + "year": { + "value": "1995", + "confidence": { + "1995": 0.9999973470717543 + }, + "entropy": 4.6500371358196715e-05 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999233439869 + }, + "entropy": 1.3325813596674645e-06 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G1442A", + "C4974T", + "T5291C", + "T6497A" + ] + } + }, + "children": [ + { + "name": "KF985959.1", + "node_attrs": { + "div": 0.9202681414141689, + "num_date": { + "value": 1995.734906133862, + "confidence": [ + 1995.6016341000711, + 1995.820800006519 + ] + }, + "author": { + "author": "Das,S., Halpin,R.A., Ransier,A., Mohan,M., Fedorova,N., Tsitrin,T., Puri,V., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Schobel,S., Shrivastava,S., Wang,S., Auguste,A.J., Wentworth,D.E. and Weaver,S.", + "value": "Das,S., Halpin,R.A., Ransier,A., Mohan,M., Fedorova,N., Tsitrin,T., Puri,V., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Schobel,S., Shrivastava,S., Wang,S., Auguste,A.J., Wentworth,D.E. and Weaver,S." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Anopheles" + }, + "year": { + "value": "1995", + "confidence": { + "1995": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T740C", + "C2717T", + "T5153C" + ] + } + } + }, + { + "name": "U55350.2", + "node_attrs": { + "div": 0.9200066614141689, + "num_date": { + "value": 1995.7082191780821, + "confidence": [ + 1995.7082191780821, + 1995.7082191780821 + ] + }, + "author": { + "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", + "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1995", + "confidence": { + "1995": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9998815315080247 + }, + "entropy": 0.0011895189400605874 + }, + "place_of_collection": { + "value": "Sinamaica" + } + }, + "branch_attrs": { + "mutations": {} + } + } + ] + }, + { + "name": "NODE_0000005", + "node_attrs": { + "div": 0.9197433814141688, + "num_date": { + "value": 1995.3748310636297, + "confidence": [ + 1995.3451873965196, + 1995.3896845139698 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9999999986573277 + }, + "entropy": 2.9257484507902972e-08 + }, + "year": { + "value": "1995", + "confidence": { + "1995": 0.9999971352902797 + }, + "entropy": 4.940720853774459e-05 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999996202404 + }, + "entropy": 8.61530836281171e-09 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T5474C" + ] + } + }, + "children": [ + { + "name": "KP282671.1", + "node_attrs": { + "div": 0.9203574514141688, + "num_date": { + "value": 1995.4917675750269, + "confidence": [ + 1995.423976424953, + 1995.5915649683934 + ] + }, + "author": { + "author": "Yu,G.Y., Wiley,M.R., Kugelman,J.R., Ladner,J.T., Beitzel,B.F., Eccleston,L.T., Morazzani,E.M., Glass,P.J. and Palacios,G.F.", + "value": "Yu,G.Y., Wiley,M.R., Kugelman,J.R., Ladner,J.T., Beitzel,B.F., Eccleston,L.T., Morazzani,E.M., Glass,P.J. and Palacios,G.F." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1995", + "confidence": { + "1995": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1382A", + "A1681G", + "C1922T", + "C2624T", + "A7993C", + "G8524A", + "G8570A" + ], + "E2": [ + "E3K" + ], + "nsP1": [ + "D446E" + ], + "nsP2": [ + "K11R" + ] + }, + "labels": { + "aa": "E2: E3K; nsP1: D446E; nsP2: K11R" + } + } + }, + { + "name": "U55347.2", + "node_attrs": { + "div": 0.9199192914141687, + "num_date": { + "value": 1995.3931506849315, + "confidence": [ + 1995.3931506849315, + 1995.3931506849315 + ] + }, + "author": { + "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", + "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1995", + "confidence": { + "1995": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9998816077484585 + }, + "entropy": 0.0011888296451969468 + }, + "place_of_collection": { + "value": "Falcon_State" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1247C", + "C10912T" + ] + } + } + }, + { + "name": "NODE_0000007", + "node_attrs": { + "div": 0.9198320314141688, + "num_date": { + "value": 2000.1379781420765, + "confidence": [ + 2000.0938497973627, + 2000.1379781420765 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.999998629645093 + }, + "entropy": 2.1319113330404147e-05 + }, + "year": { + "value": "2000", + "confidence": { + "2000": 0.9987111286808573 + }, + "entropy": 0.014484604562317368 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999989241639 + }, + "entropy": 2.3290030817800108e-08 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C11236T" + ] + } + }, + "children": [ + { + "name": "AY973944.1", + "node_attrs": { + "div": 0.9200954014141688, + "num_date": { + "value": 2000.7581967213114, + "confidence": [ + 2000.7581967213114, + 2000.7581967213114 + ] + }, + "author": { + "author": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C.", + "value": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "2000", + "confidence": { + "2000": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Venezuela" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G6324A", + "C6347T", + "G9158A" + ], + "E2": [ + "E199K" + ], + "nsP4": [ + "V208I" + ] + }, + "labels": { + "aa": "E2: E199K; nsP4: V208I" + } + } + }, + { + "name": "AY986475.1", + "node_attrs": { + "div": 0.9198331814141688, + "num_date": { + "value": 2000.1379781420765, + "confidence": [ + 2000.1379781420765, + 2000.1379781420765 + ] + }, + "author": { + "author": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C.", + "value": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "2000", + "confidence": { + "2000": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Barinas" + } + }, + "branch_attrs": { + "mutations": {} + } + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000012", + "node_attrs": { + "div": 0.9104417214141688, + "num_date": { + "value": 1960.7218807517315, + "confidence": [ + 1960.6203109647797, + 1960.8101818877037 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9774144455918684, + "Venezuela": 0.022510224844669892 + }, + "entropy": 0.10856357612311764 + }, + "year": { + "value": "1960", + "confidence": { + "1960": 0.5253046091707423, + "1961": 0.2007462001760052, + "1962": 0.10363348714173033, + "1963": 0.0049365748392661505 + }, + "entropy": 1.840709934771202 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999989137313 + }, + "entropy": 2.350541754942663e-08 + }, + "place_of_collection": { + "value": "Cuninamarca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A8797G", + "G9268A" + ] + } + }, + "children": [ + { + "name": "NODE_0000013", + "node_attrs": { + "div": 0.9117098014141688, + "num_date": { + "value": 1970.17603883936, + "confidence": [ + 1969.849798293489, + 1970.4467763911841 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9997949054679495 + }, + "entropy": 0.0020652460801795372 + }, + "year": { + "value": "1971", + "confidence": { + "1968": 0.013501242391026864, + "1970": 0.012737144382324666, + "1971": 0.5072391413355678, + "1974": 0.0866075757767946 + }, + "entropy": 2.464885148266308 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999243929409 + }, + "entropy": 1.3153881513257522e-06 + }, + "place_of_collection": { + "value": "Puerto_Boyaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1514C", + "A2255G", + "A5033G", + "C5606T", + "C6077T", + "C6383T", + "T6422C", + "C7118T", + "C7771A", + "A9392T", + "A9619G", + "T9871C", + "T9892C", + "G10393A", + "T10423C", + "C10849T" + ], + "E2": [ + "T277S" + ] + }, + "labels": { + "aa": "E2: T277S" + } + }, + "children": [ + { + "name": "KC344519.1", + "node_attrs": { + "div": 0.9160897714141688, + "num_date": { + "value": 1971.3301369863013, + "confidence": [ + 1971.3301369863013, + 1971.4041095890411 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mansonia sp." + }, + "year": { + "value": "1971", + "confidence": { + "1971": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Puerto_Boyaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C192T", + "T559C", + "T578C", + "A707G", + "C1031T", + "C1418T", + "T1547C", + "A1937G", + "T2414C", + "C2650T", + "G2651A", + "A2810G", + "C3179T", + "T3770C", + "A3902G", + "C3971T", + "C4019T", + "C4334T", + "C4382T", + "T4727C", + "G5405A", + "G6287A", + "C6380T", + "T6861C", + "A6863G", + "A6992T", + "C7100T", + "T7478C", + "A7646C", + "T7867C", + "T8056C", + "A8215G", + "C8243A", + "G8269A", + "G8287A", + "C8836T", + "T9031C", + "A9079G", + "A9583T", + "C9899T", + "C10150T", + "T10204C", + "T10222C", + "T10441C", + "T10600C", + "T10856C", + "C10903T", + "C10912T", + "T11194C" + ], + "nsP1": [ + "V172A" + ], + "nsP2": [ + "P334L" + ] + }, + "labels": { + "aa": "nsP1: V172A; nsP2: P334L" + } + } + }, + { + "name": "KC344477.1", + "node_attrs": { + "div": 0.9171942914141687, + "num_date": { + "value": 1974.0013698630137, + "confidence": [ + 1974.0013698630137, + 1974.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "1974", + "confidence": { + "1974": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Lozania" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T755C", + "A1163G", + "T1175C", + "T1190C", + "A1442C", + "C1469A", + "A1508G", + "C1622T", + "C1712T", + "C1761T", + "T2579C", + "T2714C", + "C2849T", + "A3384G", + "T3443C", + "T3476C", + "C3527T", + "T3752C", + "C3780T", + "C4016T", + "T4436C", + "T4772C", + "A4919G", + "T4943C", + "C5059A", + "C5088T", + "C5184T", + "C5228T", + "T5589A", + "G5591T", + "C6290T", + "T6392C", + "T6605C", + "G6656T", + "T6767C", + "C6870T", + "T7079C", + "A7253G", + "A7268T", + "A7470T", + "G7570A", + "G7780A", + "A7786G", + "G7793A", + "A7883C", + "A7967G", + "G7987A", + "C8032T", + "G8131A", + "T8278C", + "A8461G", + "C9196T", + "C9352T", + "G9367T", + "A9460G", + "C9643T", + "C10501T", + "A10726G", + "A11039T", + "T11080C", + "C11155T" + ], + "CP": [ + "G78S", + "T108P", + "I136V" + ], + "E1": [ + "T347S" + ], + "nsP1": [ + "H475Q" + ], + "nsP2": [ + "T579A" + ], + "nsP3": [ + "P343Q", + "P353S", + "S520T" + ], + "nsP4": [ + "S590C" + ] + }, + "labels": { + "aa": "CP: G78S, T108P, I136V; E1: T347S; nsP1: H475Q; nsP2: T579A; nsP3: P343Q, P353S, S520T; nsP4: S590C" + } + } + } + ] + }, + { + "name": "NODE_0000014", + "node_attrs": { + "div": 0.9109026314141688, + "num_date": { + "value": 1960.7949361639837, + "confidence": [ + 1960.7213678212581, + 1960.86732680567 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9944414297613405, + "Venezuela": 0.005483013629944607 + }, + "entropy": 0.034863504384858066 + }, + "year": { + "value": "1960", + "confidence": { + "1938": 0.0034043605579975405, + "1960": 0.5988763635780904, + "1961": 0.22150663095038095, + "1962": 0.06776550992119892 + }, + "entropy": 1.4910365082991255 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999996771207 + }, + "entropy": 6.63534331949957e-08 + }, + "place_of_collection": { + "value": "Cuninamarca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G2633A", + "G4778A", + "C6230T", + "T8476C", + "G10348T" + ] + } + }, + "children": [ + { + "name": "NODE_0000015", + "node_attrs": { + "div": 0.9111696514141688, + "num_date": { + "value": 1960.8272486448998, + "confidence": [ + 1960.7583583046387, + 1960.8867293598998 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999548655351008 + }, + "entropy": 0.0004984134624053261 + }, + "year": { + "value": "1960", + "confidence": { + "1938": 0.0015323078169926134, + "1960": 0.6805192402755836, + "1961": 0.24405627044076617, + "1962": 0.034087855960040464 + }, + "entropy": 1.009006002106492 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999998475641643 + }, + "entropy": 2.5451462846810655e-06 + }, + "place_of_collection": { + "value": "Cuninamarca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A2436C", + "C10861T" + ] + } + }, + "children": [ + { + "name": "KC344484.1", + "node_attrs": { + "div": 0.9148059714141689, + "num_date": { + "value": 1961.548337672467, + "confidence": [ + 1961.3653973371609, + 1961.7709027013934 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Equus ferus caballus" + }, + "year": { + "value": "1961", + "confidence": { + "1961": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Cuninamarca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T242C", + "T378C", + "C692T", + "C920T", + "C986T", + "C1688T", + "C2498T", + "A3269G", + "C3524T", + "A3794G", + "T4373C", + "C4751A", + "A4919T", + "C4992T", + "T5006C", + "T5231C", + "T5386A", + "G6131A", + "T6410C", + "A6479G", + "G6572A", + "A6593G", + "C7184T", + "G7594A", + "C7743T", + "C7758A", + "C8236T", + "C8239T", + "C8326T", + "C8377T", + "A8913G", + "A8971G", + "C9138T", + "C9201A", + "C9394T", + "T9463C", + "G9514A", + "G9535A", + "T10130C", + "T11228C", + "T11260C" + ], + "CP": [ + "P61L", + "P66Q" + ], + "E2": [ + "D117G", + "A192V", + "T213K" + ], + "nsP3": [ + "P321S", + "M452K" + ] + }, + "labels": { + "aa": "CP: P61L, P66Q; E2: D117G, A192V, T213K; nsP3: P321S, M452K" + } + } + }, + { + "name": "MK028850.1", + "node_attrs": { + "div": 0.9130646614141689, + "num_date": { + "value": 1960.9986338797814, + "confidence": [ + 1960.9652987163674, + 1960.9986338797814 + ] + }, + "author": { + "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", + "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1960", + "confidence": { + "1960": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9998814557637888 + }, + "entropy": 0.001190203700173912 + }, + "place_of_collection": { + "value": "Cuninamarca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1700A", + "T2015C", + "C2558T", + "C3105T", + "T3410C", + "C3485A", + "T3677C", + "A3929G", + "T4097C", + "A4910G", + "A5063T", + "C5204T", + "A5365G", + "A5378C", + "A5522G", + "C5585T", + "C5666T", + "A6863G", + "T7226C", + "A7322G", + "C8032T", + "C9487T", + "C9523T", + "G9538T", + "C10762T" + ], + "nsP3": [ + "N445S" + ] + }, + "labels": { + "aa": "nsP3: N445S" + } + } + } + ] + }, + { + "name": "NODE_0000017", + "node_attrs": { + "div": 0.9111634414141688, + "num_date": { + "value": 1970.2186441256117, + "confidence": [ + 1970.0179598670015, + 1970.402684372821 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.762263131077703, + "Peru": 0.2336546058625439, + "Venezuela": 0.0026825074038460297 + }, + "entropy": 0.5752772674043409 + }, + "year": { + "value": "1970", + "confidence": { + "1970": 0.5887262166591397, + "1972": 0.1006408041150334, + "1973": 0.027330655440310426, + "1975": 0.016491600901210553 + }, + "entropy": 2.060552704701851 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999866195961 + }, + "entropy": 2.559580939621486e-07 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1622T", + "C1955T", + "C4075T", + "A5039G", + "C6077T" + ], + "nsP3": [ + "T15I" + ] + }, + "labels": { + "aa": "nsP3: T15I" + } + }, + "children": [ + { + "name": "NODE_0000018", + "node_attrs": { + "div": 0.9127078514141689, + "num_date": { + "value": 1970.525598866973, + "confidence": [ + 1970.4016443282358, + 1970.6817113617524 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Colombia": 0.13544949918670654, + "Peru": 0.8626213171338558 + }, + "entropy": 0.41426845753671354 + }, + "year": { + "value": "1970", + "confidence": { + "1970": 0.7228337472994449, + "1972": 0.058988418305927603, + "1973": 0.01641307425932972, + "1975": 0.016218228824383327 + }, + "entropy": 1.542871071352093 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999943575575 + }, + "entropy": 1.1280706361134585e-07 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2036T", + "A3269G", + "C3413T", + "C3596T", + "C5047T", + "C5056T", + "A5507G", + "C5606T", + "C7025T", + "T8140C", + "C8896T", + "C9718T", + "G10139A", + "C10180T", + "T10576C", + "C11124T" + ], + "E1": [ + "V47I", + "T375M" + ], + "nsP3": [ + "T339I", + "P342L" + ] + }, + "labels": { + "aa": "E1: V47I, T375M; nsP3: T339I, P342L" + } + }, + "children": [ + { + "name": "KC344522.1", + "node_attrs": { + "div": 0.9220800814141689, + "num_date": { + "value": 2000.0013661202186, + "confidence": [ + 2000.0013661202186, + 2000.8989071038252 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Homo sapiens" + }, + "year": { + "value": "2000", + "confidence": { + "2000": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26C", + "A52G", + "C192T", + "T302C", + "C458T", + "C566T", + "C635T", + "C671T", + "T710C", + "G716A", + "C762T", + "C1169T", + "C1322T", + "A1736G", + "C1748T", + "T1829C", + "C1916T", + "T2123C", + "T2237C", + "A2323G", + "C2519T", + "C2726T", + "A2771G", + "T2846C", + "T2873C", + "C3053T", + "A3194G", + "T3267C", + "A3354C", + "A3503G", + "C3512T", + "C3609A", + "T3689C", + "G3893T", + "C3962T", + "C4069T", + "T4075C", + "T4097C", + "G4178A", + "T4223C", + "C4361T", + "C4376T", + "G4379T", + "A4604C", + "C4658T", + "T4664C", + "G4796A", + "A4883G", + "A5063G", + "C5088T", + "T5104C", + "T5231C", + "T5276C", + "C5339T", + "T5369A", + "A5669G", + "T5766C", + "G5780T", + "G5903A", + "G5957A", + "T6122A", + "C6212T", + "T6233C", + "A6266G", + "C6290T", + "T6356C", + "G6524A", + "G6617A", + "T6641C", + "A6863G", + "C7350T", + "A7481G", + "A7484G", + "C7654T", + "C7726T", + "G7738A", + "A7763C", + "G7780A", + "C7816T", + "G7846A", + "C8038T", + "C8161T", + "T8257C", + "A8402C", + "C8407T", + "A8541G", + "T8722C", + "G8779A", + "G9238A", + "C9340T", + "G9676A", + "T9730C", + "C9817T", + "A9877G", + "T9907C", + "C10032T", + "C10120T", + "A10183G", + "A10246T", + "T10273C", + "A10627G", + "T10816C", + "A10876C", + "C11036T", + "C11055T", + "C11173A" + ], + "E1": [ + "A11V", + "E292D", + "A352V" + ], + "E3": [ + "M6L", + "K52R" + ], + "nsP1": [ + "K3R" + ], + "nsP2": [ + "K225R", + "Q654K" + ], + "nsP3": [ + "T13M", + "I15T", + "P353S", + "L358P" + ], + "nsP4": [ + "H550Y" + ] + }, + "labels": { + "aa": "E1: A11V, E292D, A352V; E3: M6L, K52R; nsP1: K3R; nsP2: K225R, Q654K; nsP3: T13M, I15T, P353S, L358P; nsP4: H550Y" + } + } + }, + { + "name": "NODE_0000019", + "node_attrs": { + "div": 0.9147837414141688, + "num_date": { + "value": 1970.831682975815, + "confidence": [ + 1970.7623115253025, + 1970.8900868666983 + ] + }, + "country": { + "value": "Peru", + "confidence": { + "Colombia": 0.0018190530665146063, + "Peru": 0.998144664026973 + }, + "entropy": 0.013775356615222691 + }, + "year": { + "value": "1970", + "confidence": { + "1970": 0.8810744190299756, + "1972": 0.020933388544945447, + "1973": 0.005961355286937118, + "1975": 0.01528269871907278 + }, + "entropy": 0.7710265204390655 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999995081754 + }, + "entropy": 1.1031051468761014e-08 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T1190C", + "A2162C", + "C2507T", + "C2759T", + "T2978G", + "T3394C", + "C3444T", + "C4154T", + "C4619T", + "T5107C", + "C5513T", + "G6854A", + "A6968G", + "C7196T", + "T8737A", + "T8857C", + "C8980T", + "A9143G", + "G9211A", + "G9500A", + "G9586A", + "A10246G", + "C10366T" + ], + "E2": [ + "T194A", + "E313K" + ], + "nsP2": [ + "V582A" + ], + "nsP3": [ + "V359A" + ] + }, + "labels": { + "aa": "E2: T194A, E313K; nsP2: V582A; nsP3: V359A" + } + }, + "children": [ + { + "name": "KC344486.1", + "node_attrs": { + "div": 0.9166315414141688, + "num_date": { + "value": 1970.9986301369863, + "confidence": [ + 1970.9655871411571, + 1970.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1970", + "confidence": { + "1970": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1169T", + "G1499A", + "A1503G", + "T1619C", + "G2270T", + "T2582C", + "C2859T", + "C4205T", + "T4373C", + "T5276C", + "G5376T", + "C5568T", + "A5583G", + "C6677T", + "C8569T", + "C8620T", + "C8782T", + "A8911G", + "A9419C", + "C10141T", + "A10201G" + ], + "E2": [ + "K286Q" + ], + "nsP1": [ + "I487V" + ], + "nsP2": [ + "P404S" + ], + "nsP3": [ + "A449S", + "P513S", + "S518G" + ] + }, + "labels": { + "aa": "E2: K286Q; nsP1: I487V; nsP2: P404S; nsP3: A449S, P513S, S518G" + } + } + }, + { + "name": "KC344525.1", + "node_attrs": { + "div": 0.9177915714141689, + "num_date": { + "value": 1975.0013698630137, + "confidence": [ + 1975.0013698630137, + 1975.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Peru", + "confidence": { + "Peru": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito" + }, + "year": { + "value": "1975", + "confidence": { + "1975": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Iquitos" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C192T", + "G1109A", + "T1592C", + "A2772G", + "C2864T", + "T3156C", + "C3417T", + "C3623T", + "G3630A", + "C4088T", + "A4874G", + "G4991A", + "C5000T", + "C5196T", + "G5408A", + "G5577A", + "T5736C", + "A7488G", + "C7795T", + "C8038T", + "C8161T", + "C8469T", + "C8608T", + "C9355T", + "A9434G", + "C9481T", + "T9529C", + "T9674C", + "T9757C", + "C10189T", + "A10621G", + "A10627G", + "A10873G", + "C11095T" + ], + "E2": [ + "N291D" + ], + "E3": [ + "A28V" + ], + "nsP2": [ + "I375V", + "Y503H", + "A661T" + ], + "nsP3": [ + "P389S", + "A516T" + ], + "nsP4": [ + "S596G" + ] + }, + "labels": { + "aa": "E2: N291D; E3: A28V; nsP2: I375V, Y503H, A661T; nsP3: P389S, A516T; nsP4: S596G" + } + } + } + ] + } + ] + }, + { + "name": "NODE_0000020", + "node_attrs": { + "div": 0.9134283214141689, + "num_date": { + "value": 1972.6448896407853, + "confidence": [ + 1972.5280495968307, + 1972.7625396316705 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9997526636284353 + }, + "entropy": 0.002456434259888812 + }, + "year": { + "value": "1972", + "confidence": { + "1970": 0.02179159709883864, + "1972": 0.7219258837517452, + "1973": 0.16756816079046194, + "1974": 0.01868457322194009 + }, + "entropy": 1.1357008104702668 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999994597796 + }, + "entropy": 1.2066007765443749e-08 + }, + "place_of_collection": { + "value": "Puerto_Boyaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G1232A", + "C1394T", + "C1568T", + "T1632C", + "G3110A", + "C3383T", + "T4709C", + "G4985T", + "G5061A", + "T5105C", + "A5624G", + "A7169G", + "T7239A", + "C7316T", + "C7612T", + "G7615A", + "C7978T", + "C8045T", + "T8590C", + "G8749A", + "C9326T", + "A9373G", + "T9775C", + "G10075A", + "T10273C", + "C11055T" + ], + "E1": [ + "A352V" + ], + "nsP3": [ + "A344T" + ], + "nsP4": [ + "S513T" + ] + }, + "labels": { + "aa": "E1: A352V; nsP3: A344T; nsP4: S513T" + } + }, + "children": [ + { + "name": "NODE_0000021", + "node_attrs": { + "div": 0.9135692814141688, + "num_date": { + "value": 1973.2476040555414, + "confidence": [ + 1973.0322417360394, + 1973.4244899210462 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999866780269501 + }, + "entropy": 0.00016994334280490855 + }, + "year": { + "value": "1973", + "confidence": { + "1970": 0.011101976522192249, + "1972": 0.32967601708757965, + "1973": 0.5368368566679189, + "1977": 0.019389982407691082 + }, + "entropy": 1.4393828654028755 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999970810689 + }, + "entropy": 6.027990732982207e-08 + }, + "place_of_collection": { + "value": "Puerto_Boyaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T4075C", + "C10177T", + "C10624T" + ], + "nsP3": [ + "I15T" + ] + }, + "labels": { + "aa": "nsP3: I15T" + } + }, + "children": [ + { + "name": "KC344520.1", + "node_attrs": { + "div": 0.9167098314141688, + "num_date": { + "value": 1973.9164383561645, + "confidence": [ + 1973.9164383561645, + 1973.989034393041 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1973", + "confidence": { + "1973": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "place_of_collection": { + "value": "Puerto_Boyaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C536T", + "C692T", + "T1052C", + "C1304T", + "C1496T", + "C1570T", + "C1578T", + "A1871T", + "T2204C", + "C2759T", + "C2799T", + "T3600C", + "C3780T", + "C3932T", + "T4043C", + "C4213T", + "A4478G", + "G6056A", + "C6812T", + "C7187T", + "T7510C", + "A7870G", + "C7912T", + "A7948G", + "A8212G", + "C8248T", + "C8939T", + "A9406G", + "G9748T", + "C10048T", + "C10108T", + "A10174G", + "A10183G", + "C10300T", + "A10378G" + ], + "E2": [ + "P126S" + ], + "nsP1": [ + "A509V", + "P512S" + ], + "nsP3": [ + "A61V" + ], + "nsP4": [ + "I603T" + ] + }, + "labels": { + "aa": "E2: P126S; nsP1: A509V, P512S; nsP3: A61V; nsP4: I603T" + } + } + }, + { + "name": "NODE_0000022", + "node_attrs": { + "div": 0.9167501114141688, + "num_date": { + "value": 1977.2174009033065, + "confidence": [ + 1976.7232688889928, + 1977.4147398773284 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999978571667354 + }, + "entropy": 3.1941887339561554e-05 + }, + "year": { + "value": "1977", + "confidence": { + "1972": 0.0034452524587882775, + "1973": 0.006726805418462594, + "1977": 0.8466639293555349, + "1978": 0.09771326102150117 + }, + "entropy": 0.7322342932907233 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999998026555 + }, + "entropy": 4.152615951551597e-08 + }, + "place_of_collection": { + "value": "Puerto_Boyaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C638T", + "C1632T", + "T2510C", + "C2615T", + "C3086T", + "T3428C", + "C3995T", + "T4694C", + "T4847A", + "C4872T", + "C5612T", + "T5963C", + "T6119C", + "C6437T", + "T6647C", + "G6908A", + "C6926A", + "A7346C", + "C7350T", + "G7403A", + "G7764A", + "A7897G", + "C8476T", + "A8554G", + "A8555C", + "C8725A", + "C8929T", + "A9178G", + "T9250C", + "C9265T", + "G9568A", + "T10285C", + "T10813C", + "T10856C", + "T10993C", + "G11050A" + ], + "CP": [ + "R68K" + ], + "E3": [ + "K57Q" + ], + "nsP4": [ + "H550Y" + ] + }, + "labels": { + "aa": "CP: R68K; E3: K57Q; nsP4: H550Y" + } + }, + "children": [ + { + "name": "KC344487.1", + "node_attrs": { + "div": 0.9178033214141689, + "num_date": { + "value": 1977.3953948101716, + "confidence": [ + 1977.0013698630137, + 1977.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Aedes fulvus" + }, + "year": { + "value": "1977", + "confidence": { + "1977": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Puerto_Boyaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G329A", + "C367T", + "T467C", + "A476T", + "A3206T", + "G3215A", + "C5305T", + "C6923T", + "C7618T", + "T8173C", + "T9508C", + "C10261T" + ], + "nsP1": [ + "T108I", + "E144D" + ], + "nsP3": [ + "S425F" + ] + }, + "labels": { + "aa": "nsP1: T108I, E144D; nsP3: S425F" + } + } + }, + { + "name": "KC344514.1", + "node_attrs": { + "div": 0.9183367614141689, + "num_date": { + "value": 1978.5821917808219, + "confidence": [ + 1978.5821917808219, + 1978.6521599503885 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1978", + "confidence": { + "1978": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Puerto_Boyaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C1160T", + "C1169T", + "A1443C", + "C1649A", + "T5138C", + "C6711T", + "G6887A", + "C7118T", + "C7334T", + "C7487T", + "C7853T", + "A8505G", + "C8920T", + "C9295T", + "T9549C", + "G9956T", + "C10759T", + "G11251A" + ], + "6k": [ + "V42L" + ], + "CP": [ + "P98S" + ], + "E2": [ + "V329A" + ], + "E3": [ + "N40S" + ] + }, + "labels": { + "aa": "6k: V42L; CP: P98S; E2: V329A; E3: N40S" + } + } + } + ] + } + ] + }, + { + "name": "NODE_0000023", + "node_attrs": { + "div": 0.9144301014141688, + "num_date": { + "value": 1972.8355821895682, + "confidence": [ + 1972.7598933016056, + 1972.8964107445365 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9996287006505108 + }, + "entropy": 0.003361851011360162 + }, + "year": { + "value": "1972", + "confidence": { + "1970": 0.009358084094487752, + "1972": 0.8590666745124776, + "1973": 0.072448676260773, + "1974": 0.022295147771667575 + }, + "entropy": 0.7055853901307676 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999998696885 + }, + "entropy": 3.0943496883140246e-09 + }, + "place_of_collection": { + "value": "Puerto_Boyaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T3056A", + "C4751T", + "T5104C", + "C5492T", + "G5528A", + "T6687C", + "T6728C", + "T8731C", + "C9124T", + "A9301T", + "C10654T" + ], + "nsP3": [ + "L358P" + ] + }, + "labels": { + "aa": "nsP3: L358P" + } + }, + "children": [ + { + "name": "KC344502.1", + "node_attrs": { + "div": 0.9160131514141688, + "num_date": { + "value": 1972.9986338797814, + "confidence": [ + 1972.9611153089252, + 1972.9986338797814 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1972", + "confidence": { + "1972": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Puerto_Boyaca" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A764G", + "C1172T", + "T1742C", + "G1830A", + "C2207T", + "C4019T", + "C4213T", + "C4538T", + "C6074T", + "C6134T", + "C9355A", + "C10405T", + "C10435T", + "A10495C", + "C11086T", + "C11122T", + "A11233G" + ], + "nsP2": [ + "A61T" + ], + "nsP3": [ + "A61V" + ] + }, + "labels": { + "aa": "nsP2: A61T; nsP3: A61V" + } + } + }, + { + "name": "NODE_0000024", + "node_attrs": { + "div": 0.9149280814141688, + "num_date": { + "value": 1974.5894691848598, + "confidence": [ + 1974.4209594886281, + 1974.6797284503987 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.3166594593222316, + "Venezuela": 0.6827354377062524 + }, + "entropy": 0.6307388663186173 + }, + "year": { + "value": "1974", + "confidence": { + "1972": 0.09597728377704116, + "1973": 0.011501220049409774, + "1974": 0.6952106760550326, + "1976": 0.07715945871669908 + }, + "entropy": 1.4320388101504777 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999837875587 + }, + "entropy": 3.070208932556706e-07 + }, + "place_of_collection": { + "value": "Catatumbo" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T695C", + "A1503G", + "A3678G", + "C3845T", + "T4061C", + "T5174C", + "T5369C" + ], + "nsP1": [ + "I487V" + ], + "nsP2": [ + "I677V" + ] + }, + "labels": { + "aa": "nsP1: I487V; nsP2: I677V" + } + }, + "children": [ + { + "name": "NODE_0000025", + "node_attrs": { + "div": 0.9180307114141688, + "num_date": { + "value": 1997.2317333630026, + "confidence": [ + 1996.9814220742671, + 1997.3918317260268 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9997627481073506 + }, + "entropy": 0.0023488626559448533 + }, + "year": { + "value": "1997", + "confidence": { + "1997": 0.39449636998288146, + "1999": 0.18436629146147115, + "2000": 0.24867747490663236, + "2001": 0.005852804586872839 + }, + "entropy": 1.9789813996467882 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999730779568 + }, + "entropy": 4.961798821133385e-07 + }, + "place_of_collection": { + "value": "Monte_San_Miguel" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C807T", + "C920T", + "A1655G", + "G1862A", + "T2660C", + "G3041A", + "G3068A", + "C3074T", + "C3230T", + "C3527T", + "T4046C", + "T4075C", + "C4154T", + "C4409T", + "G4517A", + "C5056T", + "C5618T", + "T5933A", + "C6293T", + "C6323T", + "T6605C", + "A6731G", + "T6878C", + "C7187T", + "T7585C", + "A7870G", + "G8344A", + "A8389G", + "C8689T", + "C8758T", + "A8923G", + "C9691A", + "T10492C", + "T11055C", + "G11149A", + "C11173T" + ], + "E1": [ + "V352A" + ], + "nsP3": [ + "I15T", + "P342L" + ] + }, + "labels": { + "aa": "E1: V352A; nsP3: I15T, P342L" + } + }, + "children": [ + { + "name": "KC344521.1", + "node_attrs": { + "div": 0.9231635214141688, + "num_date": { + "value": 1999.0013698630137, + "confidence": [ + 1999.0013698630137, + 1999.3240068702023 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "mosquito" + }, + "year": { + "value": "1999", + "confidence": { + "1999": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Monte_San_Miguel" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C671T", + "C695T", + "A879G", + "A926G", + "G1298A", + "T1595C", + "C1608T", + "G1889A", + "A1910G", + "C2014T", + "G2669A", + "G2801A", + "C3014T", + "A3438G", + "C3485T", + "T3491C", + "C3589A", + "C3671T", + "A3896G", + "T3905G", + "C4010T", + "G4130A", + "C4133T", + "C4640T", + "T4727C", + "C4955T", + "T5107C", + "G5198A", + "C5234T", + "A5327G", + "C5356T", + "A5364G", + "A5441G", + "C6149T", + "C6204T", + "T6230C", + "G6440A", + "T6470C", + "T6707C", + "A7082G", + "C7196T", + "T7469C", + "T7852C", + "C7936T", + "A8104G", + "C8134T", + "G8294A", + "C8734T", + "T8905C", + "C9487T", + "C9841T", + "T10204C", + "T10213C", + "T10345C", + "A10885G", + "C11074T", + "C11279T" + ], + "CP": [ + "V245M" + ], + "nsP1": [ + "I279V" + ], + "nsP2": [ + "T122I", + "I597V", + "T647K" + ], + "nsP3": [ + "V359A", + "A442V", + "N445D" + ] + }, + "labels": { + "aa": "CP: V245M; nsP1: I279V; nsP2: T122I, I597V, T647K; nsP3: V359A, A442V, N445D" + } + } + }, + { + "name": "NODE_0000026", + "node_attrs": { + "div": 0.9189500214141688, + "num_date": { + "value": 1997.6040820141352, + "confidence": [ + 1997.5001572322528, + 1997.7155373863532 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999962513782206 + }, + "entropy": 5.154486432926093e-05 + }, + "year": { + "value": "1997", + "confidence": { + "1997": 0.5229035134404344, + "1999": 0.07407946243433171, + "2000": 0.3275868921944896, + "2001": 0.0031181823709028325 + }, + "entropy": 1.3764751085880897 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999996107033 + }, + "entropy": 8.822065682081791e-09 + }, + "place_of_collection": { + "value": "Monte_San_Miguel" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C4061T", + "A4184G", + "C4907T", + "G5789A", + "C6615A", + "A7310G", + "C8032T", + "C8275T", + "T8500C", + "A8554G", + "A9679C", + "C11158T" + ] + } + }, + "children": [ + { + "name": "KC344461.2", + "node_attrs": { + "div": 0.9237977114141688, + "num_date": { + "value": 2000.0013661202186, + "confidence": [ + 2000.0013661202186, + 2000.1065073352204 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2000", + "confidence": { + "2000": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Monte_San_Miguel" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A503C", + "A992G", + "A1067G", + "C1301T", + "C1361T", + "C1364T", + "G1478T", + "A1763G", + "C2009T", + "T2177C", + "C2273T", + "G2897T", + "A2987G", + "C3053T", + "G3071A", + "C3086T", + "G3638A", + "A3701G", + "C3774A", + "G4469A", + "T4940C", + "G5036A", + "T5138C", + "T5363C", + "C5429T", + "A5471G", + "T5618C", + "T5642C", + "A5645G", + "G5852A", + "C5870T", + "A6452G", + "G6719A", + "T6809A", + "C7025T", + "G7286A", + "T7925C", + "C8236T", + "C8374T", + "C8476T", + "C8743T", + "A8753C", + "G8941A", + "G9114A", + "A9200T", + "C9763T", + "T10285C", + "T10426C", + "C10435T", + "G11027A", + "C11032T", + "C11083T", + "T11161C" + ], + "E1": [ + "A343T" + ], + "E2": [ + "S184N", + "T213S" + ], + "nsP2": [ + "I446M", + "L709M" + ] + }, + "labels": { + "aa": "E1: A343T; E2: S184N, T213S; nsP2: I446M, L709M" + } + } + }, + { + "name": "NODE_0000027", + "node_attrs": { + "div": 0.9192882614141689, + "num_date": { + "value": 1997.7097227668482, + "confidence": [ + 1997.593510960301, + 1997.760040476224 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999994633553295 + }, + "entropy": 8.61276077409149e-06 + }, + "year": { + "value": "1997", + "confidence": { + "1997": 0.6127849316133969, + "1999": 0.04056517210820938, + "2000": 0.3006379195263638, + "2001": 0.0021199352105861335 + }, + "entropy": 1.1061565782872598 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999999999664281 + }, + "entropy": 7.657347502733415e-09 + }, + "place_of_collection": { + "value": "Colombia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G275A", + "T3248C", + "C6566T", + "C9721T" + ] + } + }, + "children": [ + { + "name": "KC344523.1", + "node_attrs": { + "div": 0.9222841114141689, + "num_date": { + "value": 1997.9986301369863, + "confidence": [ + 1997.954126328248, + 1997.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1997", + "confidence": { + "1997": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Colombia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T278C", + "T491C", + "C1448T", + "T1670C", + "C1892T", + "A2885G", + "C2949T", + "A3116T", + "C3311T", + "C3674T", + "T3719C", + "C4076T", + "C4088T", + "G4341A", + "G4718A", + "G4976A", + "T5276C", + "C5297T", + "T5863G", + "T6197C", + "C7028T", + "C7275T", + "C7873T", + "T8194C", + "G8206T", + "C9451T", + "T9760C", + "C10336T", + "A10669G", + "C10795T", + "A11358G", + "T11365C", + "C11412T" + ], + "nsP3": [ + "V104I" + ], + "nsP4": [ + "L54R" + ] + }, + "labels": { + "aa": "nsP3: V104I; nsP4: L54R" + } + } + }, + { + "name": "NODE_0000028", + "node_attrs": { + "div": 0.9213308314141688, + "num_date": { + "value": 2000.867716834393, + "confidence": [ + 2000.5816175586583, + 2000.9852212342785 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999999995055792 + }, + "entropy": 1.121853466494994e-08 + }, + "year": { + "value": "2000", + "confidence": { + "2000": 0.9964091699546723, + "2001": 0.0034558403236255373 + }, + "entropy": 0.024780999239054052 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999999191 + }, + "entropy": 1.3105193721555325e-12 + }, + "place_of_collection": { + "value": "Colombia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A92G", + "A623G", + "A850G", + "G1100A", + "C2027T", + "A2696C", + "C3026T", + "G3037A", + "T3158C", + "C3407T", + "C3631T", + "C4416T", + "A5225T", + "A6299G", + "T6527C", + "G6581A", + "C6794T", + "T7331C", + "C7618T", + "C7936T", + "C8980T", + "C9832A", + "G10705A", + "T11158C" + ], + "nsP1": [ + "K269R" + ], + "nsP2": [ + "R463K", + "A661V" + ] + }, + "labels": { + "aa": "nsP1: K269R; nsP2: R463K, A661V" + } + }, + "children": [ + { + "name": "KC344429.1", + "node_attrs": { + "div": 0.9213319814141688, + "num_date": { + "value": 2001.0013698630137, + "confidence": [ + 2001.0013698630137, + 2001.898904109589 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Moncayo,A.C., Medina,G.M., Kalvatchev,Z., Brault,A.C., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., De Siger,J., Vasquez,C., Walder,R., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Moncayo,A.C., Medina,G.M., Kalvatchev,Z., Brault,A.C., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., De Siger,J., Vasquez,C., Walder,R., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2001", + "confidence": { + "2001": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Colombia" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "KC344462.1", + "node_attrs": { + "div": 0.9216799414141689, + "num_date": { + "value": 2000.9677549104752, + "confidence": [ + 2000.0013661202186, + 2000.9986338797814 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "Culex vomerifer" + }, + "year": { + "value": "2000", + "confidence": { + "2000": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Colombia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C326T", + "C2453T", + "T5276C", + "T9052C" + ] + } + } + }, + { + "name": "NODE_0000030", + "node_attrs": { + "div": 0.9214193314141689, + "num_date": { + "value": 2000.9061056555308, + "confidence": [ + 2000.6252398584336, + 2000.9978328123937 + ] + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 0.9999999848149043 + }, + "entropy": 3.0049758731401275e-07 + }, + "year": { + "value": "2000", + "confidence": { + "2000": 0.9999782311021413 + }, + "entropy": 0.00026885153476692455 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999999853905 + }, + "entropy": 3.771387062273775e-10 + }, + "place_of_collection": { + "value": "Monte_San_Miguel" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C8035T" + ] + } + }, + "children": [ + { + "name": "KC344460.1", + "node_attrs": { + "div": 0.9215069814141689, + "num_date": { + "value": 2000.935651057231, + "confidence": [ + 2000.0013661202186, + 2000.9986338797814 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Culex vomerifer" + }, + "year": { + "value": "2000", + "confidence": { + "2000": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Monte_San_Miguel" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2453T" + ] + } + } + }, + { + "name": "KC344459.1", + "node_attrs": { + "div": 0.9215077914141688, + "num_date": { + "value": 2000.935833281642, + "confidence": [ + 2000.0013661202186, + 2000.9986338797814 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "2000", + "confidence": { + "2000": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Monte_San_Miguel" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C5841T" + ] + } + } + } + ] + } + ] + } + ] + } + ] + } + ] + }, + { + "name": "NODE_0000031", + "node_attrs": { + "div": 0.9160951014141688, + "num_date": { + "value": 1974.8158236908484, + "confidence": [ + 1974.7206905782782, + 1974.8669432741194 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.0038438004810086475, + "Venezuela": 0.9961523371473308 + }, + "entropy": 0.02527437475506881 + }, + "year": { + "value": "1974", + "confidence": { + "1972": 0.03275744091372835, + "1973": 0.003918621171987614, + "1974": 0.8267820068910158, + "1976": 0.08981574353759933 + }, + "entropy": 0.8256688347744167 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999998873114 + }, + "entropy": 2.691983294903498e-09 + }, + "place_of_collection": { + "value": "Catatumbo" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A26C", + "T959C", + "C1292T", + "A1468G", + "G2468A", + "T3011G", + "A3364G", + "T6035C", + "T7103C", + "C7305T", + "T8722C", + "T9262C" + ], + "nsP1": [ + "H475R" + ], + "nsP2": [ + "D454E", + "Q572R" + ] + }, + "labels": { + "aa": "nsP1: H475R; nsP2: D454E, Q572R" + } + }, + "children": [ + { + "name": "KC344508.1", + "node_attrs": { + "div": 0.9179397514141688, + "num_date": { + "value": 1974.9986301369863, + "confidence": [ + 1974.9562173221227, + 1974.9986301369863 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1974", + "confidence": { + "1974": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Catatumbo" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2684T", + "C3017T", + "G5100C", + "T5417C", + "T5964C", + "C6434T", + "T6464C", + "C6551T", + "C6801T", + "G7723A", + "C7972T", + "C8164T", + "T8622C", + "A8805G", + "C10255T", + "T11406C", + "C11407T", + "T11411C", + "C11412T", + "T11416C" + ], + "E2": [ + "I20T", + "Q81R" + ], + "nsP3": [ + "A357P" + ] + }, + "labels": { + "aa": "E2: I20T, Q81R; nsP3: A357P" + } + } + }, + { + "name": "NODE_0000223", + "node_attrs": { + "div": 0.9160951014141688, + "num_date": { + "value": 1975.8542255264597, + "confidence": [ + 1975.6714763772309, + 1976.5934699097827 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.999712496759018 + }, + "entropy": 0.0026403813480878873 + }, + "year": { + "value": "1976", + "confidence": { + "1972": 0.005338577972071168, + "1974": 0.10873369184685049, + "1976": 0.8238904952835954, + "1981": 0.004163239951222068 + }, + "entropy": 0.8334513371970622 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999999917460309 + }, + "entropy": 1.6187955867711833e-07 + }, + "place_of_collection": { + "value": "Pto_Concha" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T4075C" + ], + "nsP3": [ + "I15T" + ] + }, + "labels": { + "aa": "nsP3: I15T" + } + }, + "children": [ + { + "name": "KC344509.1", + "node_attrs": { + "div": 0.9173226114141688, + "num_date": { + "value": 1976.0013661202186, + "confidence": [ + 1976.0013661202186, + 1976.8030729561344 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1976", + "confidence": { + "1976": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Pto_Concha" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G1046A", + "C2799T", + "G4139A", + "T5633C", + "C6539T", + "G6821A", + "C8252T", + "A8567G", + "C9352T", + "A10052G", + "C10057T", + "T10654C", + "C10954T", + "C11296T" + ], + "E1": [ + "I18V" + ], + "E2": [ + "T2A" + ] + }, + "labels": { + "aa": "E1: I18V; E2: T2A" + } + } + }, + { + "name": "NODE_0000033", + "node_attrs": { + "div": 0.9167102114141689, + "num_date": { + "value": 1981.147812868467, + "confidence": [ + 1980.886678577077, + 1981.3161055043113 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Colombia": 0.020847429569410107, + "Venezuela": 0.9790197820680464 + }, + "entropy": 0.10296719795077397 + }, + "year": { + "value": "1981", + "confidence": { + "1974": 0.0073364321879421475, + "1976": 0.020519984801216747, + "1981": 0.5746638644079651, + "1983": 0.16996090608597164 + }, + "entropy": 1.9273736993770008 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999089140236334 + }, + "entropy": 0.000938519034715845 + }, + "place_of_collection": { + "value": "Sinamaica" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2690T", + "T3452A", + "C5059T", + "T7478C", + "C7651T", + "C9361T", + "C9820T", + "T11354C" + ], + "nsP3": [ + "P343L" + ] + }, + "labels": { + "aa": "nsP3: P343L" + } + }, + "children": [ + { + "name": "U55362.2", + "node_attrs": { + "div": 0.9206052714141688, + "num_date": { + "value": 1983.4150684931508, + "confidence": [ + 1983.4150684931508, + 1983.4865753424658 + ] + }, + "author": { + "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", + "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." + }, + "country": { + "value": "Colombia", + "confidence": { + "Colombia": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1983", + "confidence": { + "1983": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9985705269169433, + "NAm": 0.0014294730830568937 + }, + "entropy": 0.010792141962150614 + }, + "place_of_collection": { + "value": "N_Santander" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C251T", + "A476G", + "C803T", + "T1479C", + "C1495A", + "T1913C", + "A1934G", + "T2093A", + "C2161T", + "T2486C", + "C2759T", + "T2966A", + "A3490G", + "T3515C", + "C3596T", + "C3650T", + "A3929G", + "T4388C", + "C4541T", + "T4592C", + "A5076G", + "C5077T", + "C5267T", + "C5315T", + "C5573G", + "A5927G", + "C6000T", + "T6155C", + "A7073G", + "C7238T", + "C8038T", + "C8134T", + "G8559A", + "G9142A", + "C9187T", + "C9223T", + "G9524A", + "C9643T", + "A9754T", + "T9760C", + "A10174T", + "C10966G", + "A11379T" + ], + "E2": [ + "V321I" + ], + "E3": [ + "R58K" + ], + "nsP1": [ + "S479P", + "A484D" + ], + "nsP2": [ + "T171I", + "H614R" + ], + "nsP3": [ + "T349V" + ], + "nsP4": [ + "I75M" + ] + }, + "labels": { + "aa": "E2: V321I; E3: R58K; nsP1: S479P, A484D; nsP2: T171I, H614R; nsP3: T349V; nsP4: I75M" + } + } + }, + { + "name": "NODE_0000034", + "node_attrs": { + "div": 0.9191201514141689, + "num_date": { + "value": 1981.8290237740132, + "confidence": [ + 1981.7794009161971, + 1981.8609359444029 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9991232698351858 + }, + "entropy": 0.0070890830952659665 + }, + "year": { + "value": "1981", + "confidence": { + "1976": 0.004860336322981043, + "1981": 0.8870218981388516, + "1983": 0.03535953230978329, + "1993": 0.00240042423955517 + }, + "entropy": 0.716080836708458 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999901372142175 + }, + "entropy": 0.0010083818176136778 + }, + "place_of_collection": { + "value": "Sinamaica" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2014T", + "A2216T", + "A2468G", + "A3062G", + "T3410C", + "C3420T", + "A4220G", + "C4529T", + "T4625C", + "A5678G", + "C6666T", + "A6701G", + "C7275T", + "A7783G", + "C7860T", + "C7972T", + "A8554G", + "C8677T", + "G8912A", + "C9088T", + "C9364T", + "G9379A", + "C9668T", + "A10099G", + "C10516T", + "A10708G", + "C10912T" + ], + "CP": [ + "A100V" + ], + "E2": [ + "D117N" + ], + "nsP2": [ + "T122I", + "R591C" + ] + }, + "labels": { + "aa": "CP: A100V; E2: D117N; nsP2: T122I, R591C" + } + }, + "children": [ + { + "name": "AF004458.2", + "node_attrs": { + "div": 0.9195590514141689, + "num_date": { + "value": 1981.8835616438357, + "confidence": [ + 1981.8835616438357, + 1981.8835616438357 + ] + }, + "author": { + "author": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C.", + "value": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1981", + "confidence": { + "1981": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9997830265865857 + }, + "entropy": 0.0020472802471449216 + }, + "place_of_collection": { + "value": "Sinamaica" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "G355T", + "C686T", + "T944A", + "A2297G", + "A2630G", + "A2696T", + "A2697G", + "T3055C", + "A3521G", + "A3658C", + "T4295C", + "G5012A", + "T5243G", + "G5523A", + "T5527C", + "A7409G", + "C8507T", + "A8911G", + "C8916T", + "A9004G", + "C9025T", + "T9469C", + "C9481T", + "C9840T", + "C9868T", + "G11176A" + ], + "6k": [ + "T3I" + ], + "E2": [ + "S118L" + ], + "E3": [ + "P41S" + ], + "nsP1": [ + "C104F" + ], + "nsP2": [ + "K350E", + "V469A", + "D670A" + ], + "nsP3": [ + "G498S", + "V499A" + ] + }, + "labels": { + "aa": "6k: T3I; E2: S118L; E3: P41S; nsP1: C104F; nsP2: K350E, V469A, D670A; nsP3: G498S, V499A" + } + } + }, + { + "name": "NODE_0000036", + "node_attrs": { + "div": 0.9225079414141689, + "num_date": { + "value": 1993.0773829712416, + "confidence": [ + 1992.8375466240466, + 1993.1922421028646 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9999365928388455 + }, + "entropy": 0.0007515573377723405 + }, + "year": { + "value": "1993", + "confidence": { + "1971": 0.005956180278244073, + "1981": 0.006154559071083228, + "1993": 0.777278831780846, + "1997": 0.028214129636648766 + }, + "entropy": 1.3541899981370986 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.999914584504586 + }, + "entropy": 0.0008855827568167349 + }, + "place_of_collection": { + "value": "Zulia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C401T", + "T1589A", + "C1956T", + "T2153C", + "A2285G", + "G2738A", + "C2894T", + "T3195C", + "G3212T", + "A3414G", + "G3590T", + "T3743C", + "T3752C", + "T3920C", + "C4937T", + "C5174T", + "G5328A", + "G5381T", + "G5408A", + "A5441T", + "T5444C", + "A5481T", + "T5960C", + "T6401C", + "T6422C", + "G6459A", + "C6620A", + "C8038T", + "T8662C", + "C9446T", + "A9595G", + "C9706T", + "T9892C", + "A10408C", + "T10423C", + "C10435T", + "T10642C", + "A11360T" + ], + "nsP2": [ + "T589A" + ], + "nsP3": [ + "A433T", + "R450S", + "S484C" + ], + "nsP4": [ + "V253I" + ] + }, + "labels": { + "aa": "nsP2: T589A; nsP3: A433T, R450S, S484C; nsP4: V253I" + } + }, + "children": [ + { + "name": "NODE_0000037", + "node_attrs": { + "div": 0.924729851414169, + "num_date": { + "value": 1993.5305894377304, + "confidence": [ + 1993.4641163384129, + 1993.5820269914066 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9999999031726606 + }, + "entropy": 1.7305314811517474e-06 + }, + "year": { + "value": "1993", + "confidence": { + "1993": 0.9996839072942166 + }, + "entropy": 0.004007315446716044 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9996464755861119 + }, + "entropy": 0.0031631177026878146 + }, + "place_of_collection": { + "value": "Zulia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T161C", + "G464A", + "A543G", + "G1628T", + "C4665T", + "C4667T", + "C5134T", + "C5792T", + "G6251A", + "C7241A", + "G7787A", + "T7834C", + "C8506T", + "T8704A", + "T9124C", + "G9140A", + "C9201G", + "T9283C", + "C9334A", + "T9896C", + "C9946T", + "C10240T", + "T10351C", + "G10462A", + "G11305A" + ], + "CP": [ + "G76R" + ], + "E2": [ + "G193R", + "T213R" + ], + "nsP1": [ + "N167D", + "L528F" + ], + "nsP3": [ + "H212Y", + "T368M" + ] + }, + "labels": { + "aa": "CP: G76R; E2: G193R, T213R; nsP1: N167D, L528F; nsP3: H212Y, T368M" + } + }, + "children": [ + { + "name": "AF004459.2", + "node_attrs": { + "div": 0.925168391414169, + "num_date": { + "value": 1993.6671232876713, + "confidence": [ + 1993.6671232876713, + 1993.6671232876713 + ] + }, + "author": { + "author": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C.", + "value": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1993", + "confidence": { + "1993": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9995282497318293 + }, + "entropy": 0.004084802963326717 + }, + "place_of_collection": { + "value": "Zulia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "C2039G", + "T3719C", + "T4373C", + "A5443T", + "T6497C" + ], + "nsP3": [ + "H471L" + ] + }, + "labels": { + "aa": "nsP3: H471L" + } + } + }, + { + "name": "U55360.2", + "node_attrs": { + "div": 0.925609211414169, + "num_date": { + "value": 1993.6671232876713, + "confidence": [ + 1993.6671232876713, + 1993.6671232876713 + ] + }, + "author": { + "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", + "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9999999999999999 + }, + "entropy": -9.99866855976916e-13 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1993", + "confidence": { + "1993": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "IC_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9995282497318293 + }, + "entropy": 0.004084802963326717 + }, + "place_of_collection": { + "value": "Zulia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "T311C", + "C1712T", + "C2384T", + "T3380C", + "T5707C", + "T5867C", + "C7603T", + "A7744G", + "T8677C", + "A11151G" + ], + "E1": [ + "K384R" + ], + "nsP4": [ + "I2T" + ] + }, + "labels": { + "aa": "E1: K384R; nsP4: I2T" + } + } + } + ] + }, + { + "name": "NODE_0000038", + "node_attrs": { + "div": 0.9262427914141689, + "num_date": { + "value": 1997.708287045473, + "confidence": [ + 1997.6524334696621, + 1997.7242822936441 + ] + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 0.9999999990948635 + }, + "entropy": 2.0128877072651943e-08 + }, + "year": { + "value": "1997", + "confidence": { + "1997": 0.9999988030723502 + }, + "entropy": 2.1543557583707227e-05 + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9999955128413331 + }, + "entropy": 5.9743323603193775e-05 + }, + "place_of_collection": { + "value": "Zulia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A361G", + "A680G", + "G1286A", + "C1844T", + "C2054T", + "C2507T", + "T2510C", + "T2786C", + "T3092C", + "C3125T", + "C3236T", + "T3425C", + "C3650T", + "C3932T", + "A4040T", + "C4061T", + "T4325C", + "C5435T", + "C5437T", + "C5480T", + "A5496G", + "C5612A", + "C6035T", + "C6080T", + "T6228G", + "C6635A", + "T6665C", + "T6861C", + "C7031T", + "A7139C", + "A7268C", + "T7347C", + "T7609C", + "G7780A", + "A7818C", + "C8620T", + "G8863A", + "C9254T", + "T9694C", + "C9721T", + "A10075G", + "T10564C" + ], + "CP": [ + "Q86P" + ], + "nsP1": [ + "E106G" + ], + "nsP3": [ + "P469L", + "R489G" + ], + "nsP4": [ + "S176A" + ] + }, + "labels": { + "aa": "CP: Q86P; nsP1: E106G; nsP3: P469L, R489G; nsP4: S176A" + } + }, + "children": [ + { + "name": "KC344513.1", + "node_attrs": { + "div": 0.9262439414141689, + "num_date": { + "value": 1997.7159326145725, + "confidence": [ + 1997.6541291684407, + 1997.7542333641754 + ] + }, + "author": { + "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", + "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "Mesocricetus auratus" + }, + "year": { + "value": "1997", + "confidence": { + "1997": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "place_of_collection": { + "value": "Catatumbo" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "MF459684.1", + "node_attrs": { + "div": 0.9262439414141689, + "num_date": { + "value": 1997.7301369863014, + "confidence": [ + 1997.7301369863014, + 1997.7301369863014 + ] + }, + "author": { + "author": "Kutchko,K.M., Madden,E.A., Morrison,C., Plante,K.S., Sanders,W., Vincent,H.A., Long,K.M., Moorman,N.J., Heise,M.T. and Laederach,A.", + "value": "Kutchko,K.M., Madden,E.A., Morrison,C., Plante,K.S., Sanders,W., Vincent,H.A., Long,K.M., Moorman,N.J., Heise,M.T. and Laederach,A." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1997", + "confidence": { + "1997": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9998771230765755 + }, + "entropy": 0.0012292934110856334 + }, + "place_of_collection": { + "value": "Zulia" + } + }, + "branch_attrs": { + "mutations": {} + } + }, + { + "name": "AF100566.1", + "node_attrs": { + "div": 0.9264186314141689, + "num_date": { + "value": 1997.7301369863014, + "confidence": [ + 1997.7301369863014, + 1997.7301369863014 + ] + }, + "author": { + "author": "Wang,E., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., Vasquez,C. and Weaver,S.C.", + "value": "Wang,E., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., Vasquez,C. and Weaver,S.C." + }, + "country": { + "value": "Venezuela", + "confidence": { + "Venezuela": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "host": { + "value": "unknown_host" + }, + "year": { + "value": "1997", + "confidence": { + "1997": 1.0 + }, + "entropy": -1.000088900581841e-12 + }, + "subtype": { + "value": "ID_VEEV" + }, + "region": { + "value": "LA,C", + "confidence": { + "LA,C": 0.9998771230765755 + }, + "entropy": 0.0012292934110856334 + }, + "place_of_collection": { + "value": "Zulia" + } + }, + "branch_attrs": { + "mutations": { + "nuc": [ + "A5099G", + "G11246A" + ], + "E1": [ + "G416R" + ] + }, + "labels": { + "aa": "E1: G416R" + } + } + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } + ] + } +} \ No newline at end of file diff --git a/auspice/VEE_root-sequence.json b/auspice/VEE_root-sequence.json new file mode 100644 index 0000000..97d4de8 --- /dev/null +++ b/auspice/VEE_root-sequence.json @@ -0,0 +1,12 @@ +{ + "6k": "ETTWETLDHLWNHNQQMFWIQLLIPLAALIVVTRLLKCVCCVVPFLVLAGAAGAGA", + "CP": "MFPFQPMYPMQPMPFRNPFAAPRRPWFPRPDPFLAMQVEELARSMANLTFKQRRDTPPEGPPAKKKKKDHQQQANRNQNGKKKNKQGKKKKKKGPPPTKNQNGNKKKAKNKPGKRQRMVMKLESDKTFPIMLDGKINGYACVVGGKLFRPMHVEGKIDNDTLAALKTKKASKYDLEYADVPQSMRSDTFKYTHEKPQGYYNWHHGAVQYENGRFTVPKGVGAKGDSGRPILDNQGRVVAIVLGGVNEGSRTALSVVMWNEKGVTVKYTPENCEQW", + "E1": "FEHATTMPNQVGIPFNTIVNRAGYAPLAISITPTKVKLIPTLNLEYITCHYKTGLDSPAIKCCGTQECTAVYRPDEQCKVFTGVYPFMWGGAYCFCDSENTQVSKAYVMKSDDCAADHAQAYKAHTASVQALLNITVGEQSTTAVVYVNGETPVNFNGVKLMAGPLSTAWTPFDRKIVQYAGEVYNYDFPEYGAGHAGAFGDIQARTTSSTDLYANTNLVLQRPKAGTIHVPYTQAPSGFEQWKKDKPPSLKYTAPFGCEIQVNPIRAENCAVGSIPLSFDIPDALFTRVSETPTLSNAECTLNECVYSSDFGGIATVKYSASKSGKCAVHIPSGTATLKESVVDLAEQGSLTMHFSTANIHPEFRLQICTTYVTCKGDCHPPKDHIVTHPQYHAQTFTAAVSKTAWTWLTSLLGGSAVIIIIGLVLATIVAMYVLTNQKHN", + "E2": "STEELFKEYKLTRPYMAKCIRCAVGSCHSPIAIESVRSDGHDGYVRLQTSSQYGLDPSGNVKGRTMRYYMHGKIEEIPLHEVSLHTSRPCHIVDGHGYFLLARCPAGDSITMEFKKDSVPHSCSVPYEVKFTPVGRELYTHPPEHGAEHPCRVYAHDAQKRGAYVEMHLPGSEVDSSLLSMSGSAVQVTPPAGKSVLVECKCGGTQISETINKAKTYNQCTKTAQCRAYRLQNDKWVYNSDKLPKAAGDTLKGKLHVPYLLTEAKCTVPLAPEPMVTFGFRSVSLKLHPKNPTYLTTRHLDGEPEYTHELISEPTVKNFSVTEKGWEFVWGNHPPKRFWAQETAPGNPHGLPHEVITHYYHRYPMTTIVGLSICAAIVTISVAASTWLFCKSRDTCLTPYRLTPNAQLPFCLAVLCCARTARA", + "E3": "SLVTTMCLLANVTFPCSQPPMCYDRKPAETLAMLSANVDNPGYDELLEAVLKCPGRKKR", + "nsP1": "MEKVHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPSDTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLFKYAAKLKKNCKDITDKDLDKKMEDLAAVMTDPDLERETICLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGLSIIRKKYLKPSNNIIFSVGSTIYHEKRDLLRSWHLPSVFHLRGKHNYTCRCETIVSCDGYVVKRIAISPGLYGKPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMGCCWAFKKHKITSVYKRPDTQTIIKVPSDFHSFVLPRIGSSTLDIGLRDRIKKLMEDQKEPPPLITAEDVQEAKEAAEEAKEVKEAEELRAALPPLAPDVEEPTLEADVDLMLQEAGA", + "nsP2": "GSVETPRGLIKVTSYTGEEKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRYAVEPYHGKVVVPEGHAIPVPDFQALSESATIVYNEREFVNRYLHHIAVHGGALNTDEEYYKVVKPTEYDGEYLYDIDKKQCVKKELVSGLGLTGELVEPPFHEFAYESLKTRPAAPYQVPTIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCAEIIRDVKKMRGLDVIARTVDSVLLNGCKHPVDTLYMDEAFACHAGTLRALIAIVKPKKAVLCGDPKQCGFFNMMCLKVHFNHELCTQVFHKSISRRCTKAVTSVVSTLFYDKKMRTTNPKETKIEIDTTGSTKPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPNSEHVNVLLTRTEDRIVWKTLAGDPWIKTLTAKYPGNFTATLEEWQEEHDAIMKHILEKPDPADVFQNKANVCWAKALVPVLQTAGIDMTAEQWNTVAYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVLDMNTGTLRDYDPSVNLVPVNSRLPHALVTHHTEHPASDFSAFVSKLKGRTVLVVGDKMNIPGKTVDWLSEHPEATFRSRLDLGIPAEVPKYDIVFVNVRTPYIYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAVARQFKFARVCKPKVSLEETEVLFVFIGYDRKKRTHNPYKLSTTLTNIYTGSGLHEAGC", + "nsP3": "APSYHVVRGDIATAEEGVIVNAANSRGQPGGGVCGALYKKFPESFDLQPIEVGKARLVKGAAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYRSVAIPLLSTGIFAGNKDRLMQSLNHLLTAMDTTDADVAIYCRDKKWETTLKEVIARREAVEEICISEDASVAEPDAELVRVHPKSSLAGRKGYSTTDGKTFSYLEGTKFHQAAKDMAEINAMWPNATEANEQICLYILGESMSSIRSKCPVEESEASTPPTTLPCLCIHAMTPERVQRLKASRPEQITVCSSFPLPKYRITGVQKIQCSHPILFSPKVPEYIHPRRYLPKPAPTEEAPELPAEDESTEGAPETTARINRDGTEPRAPETTAIEDEAEDTMSLASESMSHQMQLVEADVHAAPSAFISTWSIPHASDFDLDSISILDTLGGASIISKASSADTKCSFMRSLEFMVRPVPAPRTVFRQAPVPKPRTRTPPHALS*ASSRTSLVSNPPGVNRVITREELEAVTPSRAPRRSGSRSSLVSNPPGVNRVITREEFEAFVAQQQ*RYDAGA", + "nsP4": "YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEIAYAPRLDLDKEEILRKKLQVNPTPANRSRYQSRRVENMKAVTTKRILKGLGHYLKAEGKVECYRTLYPVPLYSASVNRAFSSPRVAVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKENPIRLTAENVTNYITKLKGPKAAALYAKTHNLTMLQDIPMDRFVMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAEHFQHGDSVLETDIASFDKSEDDAMALTALMILEDLGVDQELLTLIEAAFGEISSIHLPTKTKFKFGAMMKSGMFLTLFVNTIINIVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDTVTGTACRVADPLKRLFKLGKPLAADDEHDDDRRRALHEESARWNRVGIFAELCKAVESRYEMVGTSVIIMAMTTLARSVAAFRHLRGNPITLY", + "nuc": "ATGGGCGGCGCATGAGAGTAGCCCAAAACAAATACCTACCCAATATGGAGAAAGTTCACGTTGACATCGAGGAGGATAGCCCATTCCTCAGAGCTTTACAACGGAGCTTCCCGCAGTTTGAGGTAGAAGCCAAGCAGGTCACTGATAATGACCATGCTAATGCCAGAGCGTTTTCGCATCTGGCTTCCAAATTGATCGAAACGGAGGTAGAACCATCCGATACGATCCTAGACATAGGCAGTGCGCCCGCCCGCAGAATGTATTCTAAGCACAAGTACCATTGTATCTGTCCGATGAAATGTGCAGAAGATCCGGACAGATTATTCAAGTATGCAGCCAAGCTGAAGAAGAACTGTAAGGACATAACAGACAAGGACTTGGACAAGAAGATGGAAGACCTCGCAGCAGTCATGACCGACCCTGACCTGGAACGGGAAACGATTTGCCTGCATGACGACGAATCATGCCGCTATGAAGGGCAAGTCGCTGTCTACCAGGATGTCTATGCGGTAGACGGCCCTACCAGCCTTTATCATCAAGCCAATAAAGGGGTAAGAGTCGCCTACTGGATAGGCTTTGACACCACGCCTTTTATGTTCAAGAACCTGGCTGGAGCATACCCATCCTACTCCACCAACTGGGCCGACGAGACAGTGCTAACGGCTCGTAACATCGGGCTGTGCAGCTCCGACGTTATGGAGCGGTCCCGGAGAGGACTGTCCATTATTAGGAAGAAATATTTAAAACCATCCAACAATATCATATTTTCTGTGGGCTCTACCATCTACCACGAGAAGAGAGACTTACTGAGGAGCTGGCACTTACCGTCAGTGTTTCACCTACGTGGCAAGCACAATTACACATGTCGGTGTGAGACTATAGTTAGTTGCGACGGGTACGTCGTTAAAAGGATAGCTATTAGTCCAGGCCTGTACGGGAAACCGTCAGGCTATGCTGCCACGATGCACCGCGAGGGATTCTTGTGCTGCAAGGTGACGGACACGCTTAACGGGGAGAGGGTCTCTTTTCCCGTGTGCACGTACGTGCCAGCTACCTTGTGCGACCAGATGACAGGCATCCTGGCTACAGACGTCAGTGCAGACGACGCTCAAAAACTGCTGGTTGGGCTCAACCAGCGGATTGTCGTGAACGGCCGCACTCAAAGGAATACTAATACTATGAAGAATTACCTACTACCAGTAGTGGCCCAGGCATTTGCCCGGTGGGCTAAAGAGTACAAGGAAGATCAAGAAGATGAAAGACCTCTGGGACTGAGAGACCGCCAGTTGGTGATGGGGTGCTGCTGGGCGTTTAAGAAACACAAGATTACATCTGTGTACAAAAGACCGGACACCCAGACCATTATCAAAGTGCCCAGCGATTTCCACTCATTCGTGCTGCCAAGAATTGGGAGCAGCACATTGGATATCGGGCTGAGAGACAGGATCAAGAAATTGATGGAGGACCAAAAGGAGCCGCCACCTCTGATTACTGCCGAAGACGTCCAAGAGGCCAAGGAAGCAGCCGAAGAGGCGAAGGAGGTCAAGGAGGCCGAGGAGTTGCGGGCAGCACTACCACCTCTGGCTCCTGATGTTGAGGAACCGACTCTGGAAGCCGATGTCGACCTGATGCTGCAAGAAGCAGGGGCAGGATCGGTGGAGACACCCCGGGGGCTGATCAAAGTTACCAGCTACACAGGTGAGGAGAAGATCGGCTCCTACGCTGTGCTTTCACCTCAAGCCGTGCTAAGGAGTGAAAAACTAACCTGCATCCACCCACTGGCTGAGCAAGTCATCGTGATAACCCACTCTGGCCGGAAAGGTAGGTACGCAGTGGAACCTTACCATGGCAAAGTGGTGGTACCTGAGGGGCATGCCATTCCCGTCCCGGACTTTCAGGCACTGAGTGAGAGCGCCACCATTGTGTACAACGAACGAGAGTTCGTGAACAGGTACCTGCACCACATCGCCGTCCACGGAGGAGCTCTGAACACCGATGAAGAGTACTACAAAGTGGTGAAACCTACCGAATATGACGGAGAATACCTGTATGACATAGACAAGAAACAGTGTGTCAAGAAAGAACTAGTCTCCGGGCTAGGGCTGACAGGTGAGCTGGTTGAACCTCCGTTCCATGAGTTCGCGTACGAGAGCCTGAAGACCAGACCAGCAGCACCTTACCAAGTACCAACCATTGGTGTGTACGGAGTACCAGGGTCAGGCAAGTCTGGCATCATAAAAAGCGCAGTAACCAAAAGAGACCTGGTGGTGAGCGCAAAGAAAGAAAACTGCGCAGAAATCATACGGGACGTCAAAAAAATGAGAGGGCTGGACGTCATTGCGCGCACTGTGGACTCAGTGCTGCTAAATGGATGCAAGCACCCAGTAGACACCCTGTACATGGATGAAGCTTTTGCATGTCACGCAGGGACTCTGCGCGCGTTGATTGCCATTGTTAAACCTAAGAAGGCAGTGCTATGCGGAGACCCGAAGCAGTGCGGCTTCTTCAACATGATGTGCCTGAAAGTGCATTTCAACCATGAACTGTGCACGCAAGTGTTCCACAAGAGCATATCTAGAAGGTGCACTAAAGCAGTCACATCTGTCGTCTCCACCCTGTTTTATGACAAGAAAATGAGAACCACCAACCCAAAAGAGACGAAGATTGAGATTGACACAACCGGCAGTACCAAGCCAAAGAAGGATGATCTGATTCTCACTTGCTTCAGGGGGTGGGTGAAGCAGCTGCAAATTGATTACAAAGGCAATGAAATAATGACGGCGGCAGCATCCCAGGGACTGACCCGAAAGGGTGTCTATGCCGTCAGGTACAAGGTCAATGAGAATCCCCTGTACGCCCCCAACTCCGAGCACGTGAATGTCCTGCTGACTAGGACGGAGGACAGGATAGTGTGGAAGACCCTGGCCGGGGACCCGTGGATTAAAACACTGACGGCCAAGTACCCAGGAAACTTCACTGCCACGCTGGAAGAATGGCAAGAAGAACATGATGCCATCATGAAGCACATCTTGGAGAAACCTGATCCTGCCGACGTCTTCCAGAATAAAGCGAACGTGTGCTGGGCCAAGGCACTAGTGCCCGTACTGCAGACCGCCGGCATTGACATGACCGCAGAGCAGTGGAACACGGTTGCGTATTTTAAAGAGGACAAGGCACACTCAGCTGAGATAGTACTAAACCAACTGTGCGTGCGGTTCTTCGGACTGGATTTGGATTCAGGTCTGTTTTCTGCACCCACAGTACCGCTGTCCATAAGGAATAACCACTGGGACAACTCACCGTCACCGAATATGTACGGACTGAACAAGGAAGTGGTCAGGCAGCTATCCCGCCGGTACCCACAGCTGCCACGAGCGGTGGCGACTGGAAGAGTGTTGGACATGAACACCGGTACGCTGCGCGATTATGATCCGAGCGTAAACCTAGTGCCGGTGAACAGTAGACTGCCTCATGCTCTGGTCACCCACCACACAGAACACCCCGCCAGCGACTTTTCTGCATTTGTGAGTAAACTGAAGGGCCGGACTGTACTGGTGGTCGGGGATAAGATGAACATCCCCGGGAAGACTGTTGACTGGCTGTCTGAACACCCTGAAGCTACCTTCAGATCTCGCCTAGATCTTGGCATCCCAGCCGAGGTACCCAAGTATGACATTGTGTTTGTTAATGTGAGGACACCGTATATATACCATCACTATCAGCAGTGTGAAGACCATGCTATTAAGCTTAGCATGCTGACTAAGAAAGCATGCCTGCACCTGAATCCGGGAGGCACCTGTGTCAGCATTGGCTACGGATACGCAGACAGAGCCAGCGAAAGCATTATTGGTGCTGTTGCTCGACAGTTCAAGTTCGCCCGGGTGTGCAAGCCGAAAGTATCCCTGGAGGAGACAGAGGTGCTATTTGTATTCATAGGGTATGACCGAAAGAAACGTACCCACAATCCCTACAAACTGTCCACTACATTGACCAACATCTACACAGGCTCAGGACTGCATGAAGCCGGATGCGCTCCCTCATACCATGTGGTGCGAGGGGATATTGCCACGGCCGAAGAAGGAGTCATTGTCAACGCAGCTAATAGCAGAGGACAACCAGGAGGTGGAGTGTGCGGGGCCCTGTACAAGAAATTCCCGGAGAGCTTCGACCTGCAGCCCATAGAGGTGGGAAAGGCACGGCTGGTAAAAGGTGCGGCAAAGCACATCATTCATGCAGTGGGACCCAATTTCAACAAAGTGTCAGAAGTGGAAGGTGACAAACAGCTGGCAGAAGCGTATGAGTCTATCGCTAAAATAGTCAATGACAACAATTACCGATCCGTGGCCATTCCGCTGCTGTCCACAGGCATATTTGCAGGAAACAAAGACAGACTCATGCAGTCATTAAACCACCTGCTGACAGCAATGGACACCACAGATGCAGATGTGGCCATCTACTGTAGAGACAAGAAATGGGAGACGACACTGAAGGAAGTAATAGCAAGGAGAGAAGCGGTAGAGGAGATATGTATCTCCGAAGATGCGTCCGTAGCAGAACCTGATGCGGAGCTGGTTAGGGTGCATCCGAAGAGCTCCCTGGCCGGTAGGAAAGGGTACAGCACGACCGATGGAAAGACTTTTTCATACCTGGAAGGGACTAAGTTTCACCAGGCGGCGAAGGATATGGCAGAGATTAACGCCATGTGGCCGAATGCAACAGAGGCTAATGAGCAGATCTGCTTGTACATCCTGGGGGAAAGCATGAGCAGCATACGTTCTAAATGCCCCGTTGAGGAGTCTGAAGCATCCACACCACCAACTACACTGCCGTGCTTGTGCATCCATGCTATGACACCTGAACGAGTACAAAGGCTGAAGGCCTCACGCCCTGAGCAAATTACAGTTTGCTCATCCTTCCCTTTGCCGAAGTACAGAATCACTGGTGTGCAGAAGATTCAATGCTCTCACCCTATACTTTTCTCACCGAAGGTGCCTGAGTACATCCATCCTCGAAGGTACCTTCCTAAACCAGCGCCCACTGAGGAGGCACCTGAACTGCCGGCAGAAGACGAATCGACAGAGGGGGCACCTGAAACAACAGCACGTATAAACAGGGATGGAACAGAGCCTAGAGCGCCTGAAACGACCGCCATAGAAGATGAAGCAGAGGACACCATGAGTTTGGCGTCAGAAAGCATGAGCCACCAAATGCAGCTAGTCGAGGCAGATGTGCACGCGGCACCTTCTGCGTTCATCTCTACATGGTCAATTCCACATGCTTCCGACTTTGATTTGGACAGCATCTCCATCCTGGACACACTGGGTGGGGCTAGCATAATCAGCAAGGCTTCGTCGGCAGACACTAAGTGTAGCTTCATGAGGAGTTTGGAGTTTATGGTGAGACCTGTGCCTGCGCCTAGGACAGTTTTTAGACAAGCACCTGTTCCGAAACCGCGCACACGAACGCCGCCGCATGCCTTAAGCTAGGCCAGCTCTAGAACTAGCCTAGTCTCTAATCCGCCTGGCGTAAATAGGGTGATTACTAGAGAGGAGCTCGAGGCGGTAACACCGTCTCGCGCTCCTAGAAGGTCCGGCTCCAGATCCAGTTTGGTCTCTAATCCGCCAGGAGTAAACAGGGTGATCACCAGGGAGGAGTTCGAGGCGTTCGTCGCGCAACAGCAATGACGGTATGACGCGGGTGCATACATCTTTTCCTCGGATACCGGTCAAGGACATTTACAACAAAAATCAGTAAGGCAAACGGTGCTGTCCGAAGTGGTGCTGGAGCGCACAGAATTGGAGATTGCGTATGCCCCGCGCCTCGACCTAGATAAAGAAGAAATACTAAGAAAGAAATTGCAAGTGAACCCCACACCGGCTAACAGGAGCAGATATCAGTCCCGGAGAGTGGAGAATATGAAAGCAGTAACTACCAAAAGAATTCTGAAAGGCCTGGGTCATTATTTGAAAGCAGAAGGAAAGGTTGAGTGCTACCGCACCTTGTATCCTGTCCCTTTGTATTCAGCAAGTGTTAACCGAGCGTTTTCTAGTCCTAGAGTGGCAGTAGAAGCATGTAATGTGGTGCTGAAGGAGAACTTTCCAACAGTGGCTTCGTACTGCATAATACCAGAGTACGATGCCTATCTGGACATGGTGGATGGCGCATCTTGCTGCTTGGACACAGCCAGTTTTTGCCCTGCTAAGTTGCGTAGCTTTCCGAAGAAACACGCCTATTTGGAACCCACCATACGATCAGCAGTGCCGTCAGCTATTCAGAACACACTGCAGAATGTACTGGCAGCTGCCACAAAAAGAAACTGCAATGTTACACAAATGAGAGAACTGCCAGTGTTGGATTCCGCTGCCTTTAATGTGGAGTGCTTCAAGAAATATGCATGCAATAATGAATATTGGGAGACATACAAAGAAAACCCTATTAGATTGACTGCAGAAAATGTAACAAATTACATTACTAAATTAAAAGGACCGAAAGCAGCTGCTCTGTATGCAAAGACACACAATCTGACCATGCTGCAGGACATCCCCATGGACCGGTTTGTTATGGATTTGAAAAGAGATGTCAAGGTGACACCAGGAACCAAACATACTGAAGAACGGCCCAAGGTGCAGGTGATCCAGGCTGCCGATCCATTGGCTACTGCGTACCTGTGCGGGATCCATCGAGAGCTGGTTCGGAGGTTAAATGCAGTACTACTGCCTAACGTCCATACACTGTTTGACATGTCTGCAGAAGACTTCGATGCCATTATTGCCGAGCATTTCCAGCATGGGGATAGTGTGCTGGAGACTGACATCGCGTCGTTCGATAAGAGCGAGGACGACGCGATGGCACTGACGGCACTGATGATCCTGGAAGACCTAGGTGTGGACCAAGAGCTGTTGACGCTGATAGAAGCGGCATTTGGGGAAATATCATCCATTCACCTGCCCACTAAAACGAAATTTAAATTTGGAGCCATGATGAAATCTGGCATGTTCCTGACCCTGTTTGTGAATACAATCATTAACATAGTCATTGCCAGCAGAGTGTTGCGTGAACGGCTGACCAACTCACCTTGTGCTGCATTCATCGGAGATGACAACATCGTCAAAGGAGTCAAATCGGACAAGCTGATGGCCGACAGGTGCGCCACCTGGTTGAACATGGAAGTGAAGATCATTGATGCAGTGGTCGGCGAGAAAGCACCATATTTCTGTGGCGGGTTCATCCTGTGTGACACGGTGACAGGCACAGCATGTCGGGTGGCTGATCCCCTGAAACGACTATTTAAGCTTGGAAAACCACTGGCAGCCGACGATGAGCATGATGACGACCGCCGCCGAGCACTGCATGAGGAGTCTGCACGGTGGAACCGGGTGGGCATTTTCGCAGAGCTGTGTAAGGCAGTGGAGTCACGGTATGAGATGGTAGGCACTTCCGTCATTATAATGGCCATGACTACCCTGGCCAGGAGTGTTGCGGCCTTCAGACACCTGAGAGGGAACCCCATAACCCTCTACGGCTAACCTGAATGGACTGCGACGTAGTCCAGTCCGCCACCATGTTCCCTTTCCAACCAATGTATCCAATGCAACCAATGCCCTTCCGCAACCCGTTTGCGGCTCCTCGCAGACCGTGGTTCCCTAGACCCGACCCCTTCCTGGCGATGCAGGTGGAAGAGTTGGCCCGGTCCATGGCCAACCTGACGTTCAAGCAGCGCCGGGATACGCCGCCAGAGGGGCCACCTGCTAAGAAGAAGAAGAAGGATCACCAGCAACAGGCTAATAGGAATCAGAATGGGAAGAAGAAGAATAAACAGGGGAAGAAGAAGAAGAAGAAAGGACCCCCACCAACAAAAAACCAAAATGGCAACAAGAAGAAAGCGAAGAATAAACCTGGCAAAAGACAGCGAATGGTCATGAAATTGGAATCTGACAAGACATTCCCTATTATGCTGGACGGAAAAATTAACGGGTATGCTTGCGTGGTCGGAGGTAAGTTATTCCGACCAATGCATGTGGAAGGAAAGATTGACAACGACACGCTGGCCGCCCTGAAGACCAAGAAGGCCTCCAAGTATGACCTGGAGTACGCAGACGTTCCCCAGAGCATGCGCTCAGATACATTCAAATACACCCATGAGAAACCCCAAGGCTATTACAACTGGCACCATGGAGCAGTCCAGTATGAAAATGGGAGGTTCACGGTGCCAAAAGGAGTAGGAGCGAAAGGAGACAGCGGCCGCCCCATCCTGGACAACCAAGGGAGAGTCGTGGCTATAGTGCTGGGAGGTGTCAACGAGGGATCTAGAACTGCCCTGTCCGTCGTCATGTGGAATGAAAAAGGGGTCACCGTCAAGTACACTCCTGAGAACTGTGAGCAGTGGTCTCTAGTTACCACCATGTGCCTGCTGGCCAATGTCACGTTCCCATGTTCCCAGCCACCAATGTGCTACGACAGGAAACCAGCAGAGACTCTGGCAATGCTCAGTGCGAACGTAGACAACCCGGGCTATGATGAGCTGCTGGAAGCCGTGCTGAAATGTCCAGGCAGGAAGAAGAGATCCACGGAGGAGCTGTTCAAGGAGTACAAGCTAACCAGGCCGTACATGGCCAAGTGCATCAGGTGTGCCGTTGGCAGCTGCCATAGCCCCATAGCCATAGAATCGGTGAGAAGCGACGGGCATGACGGCTACGTACGGCTACAGACATCATCGCAGTACGGATTGGATCCATCCGGAAATGTAAAAGGCAGGACTATGAGGTACTACATGCATGGAAAAATTGAAGAGATACCACTACATGAAGTTTCACTCCACACATCACGGCCGTGTCACATTGTAGACGGGCATGGTTACTTCCTCCTAGCTAGATGCCCTGCAGGAGACTCCATAACCATGGAATTTAAGAAGGATTCAGTACCACACTCCTGCTCCGTGCCCTATGAAGTGAAATTCACTCCTGTGGGCAGAGAACTGTACACTCACCCCCCAGAACACGGAGCAGAACACCCGTGCCGCGTGTACGCTCACGATGCACAGAAGAGAGGTGCTTATGTCGAAATGCACCTGCCCGGATCCGAAGTGGACAGCTCACTGCTCTCCATGAGCGGAAGTGCTGTGCAGGTGACTCCCCCAGCAGGGAAAAGCGTCCTGGTGGAGTGCAAATGCGGCGGCACACAAATCTCAGAGACCATCAACAAGGCAAAAACGTACAACCAGTGCACAAAGACAGCACAGTGCCGGGCATACCGACTGCAGAATGACAAGTGGGTGTACAATTCCGACAAACTGCCGAAAGCAGCAGGAGACACGCTGAAAGGAAAACTGCATGTGCCATACCTCCTTACAGAAGCGAAATGCACAGTGCCACTGGCCCCAGAGCCCATGGTGACTTTCGGGTTCAGATCAGTGTCTCTGAAACTGCACCCAAAGAACCCCACCTATCTGACCACCCGCCACCTGGATGGAGAACCAGAGTACACTCACGAGCTCATTTCTGAACCCACCGTTAAAAACTTTTCCGTCACAGAGAAAGGTTGGGAATTCGTGTGGGGCAACCACCCGCCGAAGAGGTTCTGGGCACAGGAAACAGCACCAGGAAACCCACATGGACTGCCGCACGAGGTAATTACTCATTACTACCACAGGTACCCCATGACCACGATCGTGGGATTGTCCATTTGCGCCGCAATAGTAACGATTTCGGTTGCAGCGTCCACCTGGCTGTTTTGCAAATCGCGAGATACGTGCCTGACCCCTTACCGACTGACCCCAAACGCCCAGTTACCTTTTTGCCTGGCAGTGCTGTGCTGCGCACGCACTGCGAGGGCAGAAACCACGTGGGAAACCCTGGACCACCTCTGGAACCATAACCAGCAGATGTTCTGGATCCAACTGCTGATCCCTCTGGCCGCCCTGATCGTGGTGACTCGACTGCTGAAATGCGTGTGTTGCGTGGTGCCTTTTTTAGTCCTAGCCGGCGCCGCAGGCGCCGGCGCCTTCGAGCACGCGACCACGATGCCGAACCAGGTGGGGATCCCGTTTAACACCATAGTCAACAGAGCAGGGTACGCACCACTGGCCATCAGCATAACCCCTACCAAAGTCAAGCTTATTCCTACACTGAACCTAGAGTACATTACATGCCACTACAAGACAGGACTTGATTCACCCGCCATCAAATGCTGCGGAACGCAGGAATGCACTGCAGTCTATAGGCCCGATGAACAGTGCAAGGTCTTCACAGGGGTGTACCCATTCATGTGGGGAGGTGCATATTGCTTCTGCGACTCTGAGAACACCCAGGTGAGCAAAGCATACGTGATGAAATCAGACGACTGCGCCGCTGATCATGCTCAGGCATATAAAGCACACACAGCCTCAGTCCAGGCCTTGCTGAACATAACTGTCGGAGAACAATCCACCACCGCAGTCGTGTACGTGAATGGAGAAACTCCTGTCAACTTTAACGGAGTCAAATTGATGGCAGGCCCTCTATCCACTGCCTGGACACCCTTTGACCGAAAAATAGTGCAGTATGCCGGAGAGGTCTACAATTATGACTTCCCAGAGTACGGAGCAGGACATGCAGGAGCATTCGGAGACATTCAAGCCCGAACAACCTCCAGCACTGACCTGTATGCAAACACGAATCTTGTACTGCAGAGACCCAAAGCCGGAACCATCCATGTGCCGTACACCCAGGCACCATCAGGTTTTGAGCAATGGAAGAAAGACAAACCACCATCATTGAAGTACACCGCCCCTTTTGGGTGCGAAATACAAGTGAACCCCATCCGAGCTGAAAACTGCGCTGTGGGATCTATTCCACTATCCTTTGACATCCCCGACGCCCTGTTTACCAGGGTGTCAGAAACACCGACACTGTCAAACGCCGAATGCACTCTTAATGAATGTGTATATTCATCGGACTTTGGCGGGATCGCCACGGTCAAGTACTCGGCCAGTAAATCAGGCAAGTGCGCAGTACATATACCATCAGGCACGGCCACTCTGAAAGAATCAGTAGTCGATCTAGCCGAACAAGGTTCGCTGACTATGCATTTTTCAACAGCGAATATCCACCCGGAGTTCAGGCTGCAAATCTGCACAACATATGTTACATGCAAAGGGGATTGTCACCCGCCTAAAGATCATATTGTGACACACCCACAGTACCACGCCCAGACATTTACAGCTGCGGTCTCTAAAACCGCATGGACGTGGTTAACATCCCTACTGGGAGGGTCAGCCGTAATTATTATAATTGGCCTAGTATTGGCAACTATTGTGGCCATGTATGTGCTGACCAACCAGAAACATAATTAAACAAAGCAGCAATTGGCAAGCTGCATATAAAGAACTCGCGGCAATTGGCAAGCTGCTTTAAAATTTAATTTTATTTTCTTTTCTTTACCTAATTGGATTTTGTTTTTAATATTTC" +} \ No newline at end of file diff --git a/auspice/veev_tip-frequencies.json b/auspice/VEE_tip-frequencies.json similarity index 92% rename from auspice/veev_tip-frequencies.json rename to auspice/VEE_tip-frequencies.json index 85ec8c5..78afb4d 100644 --- a/auspice/veev_tip-frequencies.json +++ b/auspice/VEE_tip-frequencies.json @@ -87,12 +87,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -184,29 +178,11 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "AF004472.2": { + "AF069903.1": { "frequencies": [ - 1e-06, - 1.9e-05, - 5.9e-05, - 0.019498, - 0.2055, - 0.494571, - 0.055119, - 0.018447, - 0.024809, - 0.001251, - 1e-06, - 0.0, 0.0, 0.0, 0.0, @@ -287,17 +263,17 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "AF069903.1": { - "frequencies": [ 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0 + ] + }, + "AF075251.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -475,16 +451,10 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "AF075255.1": { + "AF075253.1": { "frequencies": [ 0.0, 0.0, @@ -572,30 +542,18 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "AF100566.1": { + "AF075254.1": { "frequencies": [ 0.0, 0.0, 0.0, - 0.000196, - 0.008683, - 0.015476, - 0.011232, - 0.735018, - 0.364635, - 0.069377, - 0.000335, - 0.000159, - 3e-06, + 0.0, + 0.0, + 0.0, + 0.0, 0.0, 0.0, 0.0, @@ -678,7 +636,7 @@ 0.0 ] }, - "AF375051.1": { + "AF075255.1": { "frequencies": [ 0.0, 0.0, @@ -697,17 +655,11 @@ 0.0, 0.0, 0.0, - 9e-06, - 5.3e-05, - 0.003956, - 0.157608, - 0.691114, - 0.032627, - 0.060834, - 0.038103, - 0.01947, - 0.006012, - 3e-06, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, 0.0, 0.0, 0.0, @@ -775,15 +727,9 @@ 0.0 ] }, - "AF448535.1": { + "AF075256.1": { "frequencies": [ - 0.333333, - 0.333323, - 0.333294, - 0.316218, - 0.083612, - 0.001087, - 4e-06, + 0.0, 0.0, 0.0, 0.0, @@ -872,15 +818,9 @@ 0.0 ] }, - "AF448536.1": { + "AF075258.1": { "frequencies": [ - 0.333333, - 0.333323, - 0.333294, - 0.316218, - 0.083612, - 0.001087, - 4e-06, + 0.0, 0.0, 0.0, 0.0, @@ -969,7 +909,7 @@ 0.0 ] }, - "AF448537.1": { + "AF075259.1": { "frequencies": [ 0.0, 0.0, @@ -1057,36 +997,24 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "AF448538.1": { + "AF100566.1": { "frequencies": [ - 0.333333, - 0.333323, - 0.333294, - 0.316218, - 0.083612, - 0.001087, - 4e-06, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0, 0.0, 0.0, + 0.0002, + 0.010811, + 0.029709, + 0.011747, + 0.428029, + 0.256932, + 0.04582, + 0.000224, + 0.000107, + 3e-06, 0.0, 0.0, 0.0, @@ -1163,7 +1091,7 @@ 0.0 ] }, - "AF448539.1": { + "AF375051.1": { "frequencies": [ 0.0, 0.0, @@ -1251,17 +1179,18 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "AY741139.1": { + "AF448535.1": { "frequencies": [ + 0.333333, + 0.333329, + 0.333313, + 0.322441, + 0.1041, + 0.002087, + 4e-06, 0.0, 0.0, 0.0, @@ -1293,19 +1222,6 @@ 0.0, 0.0, 0.0, - 0.000235, - 0.039621, - 0.793246, - 0.998989, - 0.999996, - 0.999853, - 0.956723, - 0.067796, - 0.000238, - 0.0, - 0.0, - 0.0, - 0.0, 0.0, 0.0, 0.0, @@ -1357,8 +1273,15 @@ 0.0 ] }, - "AY823299.1": { + "AF448536.1": { "frequencies": [ + 0.333333, + 0.333329, + 0.333313, + 0.322441, + 0.1041, + 0.002087, + 4e-06, 0.0, 0.0, 0.0, @@ -1377,19 +1300,6 @@ 0.0, 0.0, 0.0, - 4e-06, - 0.000633, - 0.049656, - 0.058442, - 0.193432, - 0.187813, - 0.192378, - 0.196064, - 0.120758, - 0.000101, - 0.0, - 0.0, - 0.0, 0.0, 0.0, 0.0, @@ -1454,7 +1364,7 @@ 0.0 ] }, - "AY973944.1": { + "AF448537.1": { "frequencies": [ 0.0, 0.0, @@ -1471,16 +1381,10 @@ 0.0, 0.0, 0.0, - 6.8e-05, - 0.001851, - 0.01219, - 0.008671, - 0.737177, - 0.295218, - 0.011409, - 0.000182, - 9.7e-05, - 6e-06, + 0.0, + 0.0, + 0.0, + 0.0, 0.0, 0.0, 0.0, @@ -1551,8 +1455,15 @@ 0.0 ] }, - "AY986475.1": { + "AF448538.1": { "frequencies": [ + 0.333333, + 0.333329, + 0.333313, + 0.322441, + 0.1041, + 0.002087, + 4e-06, 0.0, 0.0, 0.0, @@ -1565,19 +1476,6 @@ 0.0, 0.0, 0.0, - 3.4e-05, - 0.00051, - 0.000598, - 0.069196, - 0.718411, - 0.554879, - 0.004446, - 0.002846, - 0.000961, - 4e-06, - 0.0, - 0.0, - 0.0, 0.0, 0.0, 0.0, @@ -1648,7 +1546,7 @@ 0.0 ] }, - "DQ390224.2": { + "AF448539.1": { "frequencies": [ 0.0, 0.0, @@ -1686,17 +1584,11 @@ 0.0, 0.0, 0.0, - 0.000147, - 0.043277, - 0.932204, - 0.999762, - 1.0, - 1.0, - 1.0, - 1.0, - 0.999978, - 0.738179, - 0.000173, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, 0.0, 0.0, 0.0, @@ -1745,7 +1637,7 @@ 0.0 ] }, - "J04332.1": { + "AY823299.1": { "frequencies": [ 0.0, 0.0, @@ -1765,6 +1657,16 @@ 0.0, 0.0, 0.0, + 2e-06, + 0.000396, + 0.043563, + 0.146526, + 0.184684, + 0.284324, + 0.25139, + 0.281293, + 0.201574, + 0.000214, 0.0, 0.0, 0.0, @@ -1823,6 +1725,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "AY973944.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -1838,12 +1745,17 @@ 0.0, 0.0, 0.0, + 8.8e-05, + 0.00191, + 0.012208, + 0.008672, + 0.740282, + 0.356181, + 0.03888, + 0.000192, + 9.2e-05, + 6e-06, 0.0, - 0.0 - ] - }, - "KC344429.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -1862,16 +1774,6 @@ 0.0, 0.0, 0.0, - 4e-06, - 0.000633, - 0.049656, - 0.058442, - 0.193432, - 0.187813, - 0.192378, - 0.196064, - 0.120758, - 0.000101, 0.0, 0.0, 0.0, @@ -1914,6 +1816,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "AY986475.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -1926,6 +1833,16 @@ 0.0, 0.0, 0.0, + 3.3e-05, + 0.000608, + 0.000741, + 0.090234, + 0.741247, + 0.555704, + 0.004446, + 0.002858, + 0.00116, + 1.4e-05, 0.0, 0.0, 0.0, @@ -1936,11 +1853,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344430.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -1995,11 +1907,27 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "DQ390224.2": { + "frequencies": [ 0.0, 0.0, 0.0, 0.0, 0.0, + 1e-06, + 4e-06, + 0.000376, + 0.05592, + 0.294555, + 0.333157, + 0.326718, + 0.142852, + 0.00371, + 6e-06, + 1e-06, 0.0, 0.0, 0.0, @@ -2033,11 +1961,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344431.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -2074,6 +1997,12 @@ 0.0, 0.0, 0.0, + 0.0, + 0.0 + ] + }, + "J04332.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -2130,11 +2059,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344432.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -2163,6 +2087,13 @@ 0.0, 0.0, 0.0, + 0.0, + 0.0, + 0.0 + ] + }, + "KC344429.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -2181,6 +2112,16 @@ 0.0, 0.0, 0.0, + 4e-06, + 0.000635, + 0.05991, + 0.19916, + 0.203773, + 0.178895, + 0.187151, + 0.179629, + 0.110413, + 0.000101, 0.0, 0.0, 0.0, @@ -2227,11 +2168,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344433.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -2244,6 +2180,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344430.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -2324,17 +2265,17 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344434.1": { - "frequencies": [ 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344431.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -2424,7 +2365,7 @@ 0.0 ] }, - "KC344435.1": { + "KC344432.1": { "frequencies": [ 0.0, 0.0, @@ -2512,16 +2453,10 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "KC344436.1": { + "KC344433.1": { "frequencies": [ 0.0, 0.0, @@ -2609,16 +2544,10 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "KC344437.1": { + "KC344434.1": { "frequencies": [ 0.0, 0.0, @@ -2706,16 +2635,10 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "KC344438.1": { + "KC344435.1": { "frequencies": [ 0.0, 0.0, @@ -2803,16 +2726,10 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "KC344439.1": { + "KC344436.1": { "frequencies": [ 0.0, 0.0, @@ -2900,17 +2817,17 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344437.1": { + "frequencies": [ 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344440.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -2991,6 +2908,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344438.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -3003,11 +2925,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344441.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -3082,6 +2999,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344439.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -3100,11 +3022,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344442.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -3173,6 +3090,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344440.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -3197,11 +3119,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344443.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -3264,6 +3181,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344441.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -3294,11 +3216,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344444.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -3355,6 +3272,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344442.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -3391,11 +3313,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344445.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -3446,6 +3363,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344443.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -3488,11 +3410,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344446.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -3537,6 +3454,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344444.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -3585,17 +3507,49 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344447.1": { - "frequencies": [ 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0 + ] + }, + "KC344445.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -3685,7 +3639,7 @@ 0.0 ] }, - "KC344448.1": { + "KC344446.1": { "frequencies": [ 0.0, 0.0, @@ -3693,6 +3647,91 @@ 0.0, 0.0, 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0 + ] + }, + "KC344447.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -3782,7 +3821,7 @@ 0.0 ] }, - "KC344449.1": { + "KC344448.1": { "frequencies": [ 0.0, 0.0, @@ -3828,17 +3867,11 @@ 0.0, 0.0, 0.0, - 6e-06, - 0.075677, - 0.281235, - 0.273566, - 0.265894, - 0.264268, - 0.256073, - 0.226407, - 0.212534, - 0.015407, - 8.7e-05, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, 0.0, 0.0, 0.0, @@ -3879,7 +3912,7 @@ 0.0 ] }, - "KC344450.1": { + "KC344449.1": { "frequencies": [ 0.0, 0.0, @@ -3921,13 +3954,104 @@ 0.0, 0.0, 0.0, + 0.013675, + 0.320302, + 0.312468, + 0.304641, + 0.296829, + 0.289041, + 0.281284, + 0.273566, + 0.265894, + 0.264268, + 0.256073, + 0.226407, + 0.212534, + 0.015407, + 8.7e-05, 0.0, 0.0, 0.0, 0.0, - 6e-06, - 0.071593, - 0.26898, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0 + ] + }, + "KC344450.1": { + "frequencies": [ + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.0, + 0.012249, + 0.290054, + 0.286069, + 0.281968, + 0.277757, + 0.273441, + 0.269027, 0.26452, 0.259928, 0.258626, @@ -3967,12 +4091,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4018,13 +4136,13 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 5e-06, - 0.057276, - 0.224806, + 0.007875, + 0.194822, + 0.200731, + 0.206695, + 0.212707, + 0.218759, + 0.224845, 0.230957, 0.237089, 0.238553, @@ -4064,12 +4182,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4161,12 +4273,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4258,12 +4364,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4355,12 +4455,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4452,12 +4546,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4549,12 +4637,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4646,12 +4728,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4743,12 +4819,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4768,14 +4838,14 @@ 0.0, 0.0, 1e-06, - 5e-06, - 0.002561, - 0.024893, - 0.071195, - 0.164464, - 0.042143, - 0.049656, - 0.000878, + 6e-06, + 0.00334, + 0.025684, + 0.071301, + 0.164474, + 0.04232, + 0.05991, + 0.00299, 5e-06, 1e-06, 0.0, @@ -4840,12 +4910,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4865,14 +4929,14 @@ 0.0, 0.0, 1e-06, - 5e-06, - 0.002561, - 0.024893, - 0.071195, - 0.164464, - 0.042143, - 0.049656, - 0.000878, + 6e-06, + 0.00334, + 0.025684, + 0.071301, + 0.164474, + 0.04232, + 0.05991, + 0.00299, 5e-06, 1e-06, 0.0, @@ -4937,12 +5001,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -4962,14 +5020,14 @@ 0.0, 0.0, 1e-06, - 5e-06, - 0.002561, - 0.024893, - 0.071195, - 0.164464, - 0.042143, - 0.049656, - 0.000878, + 6e-06, + 0.00334, + 0.025684, + 0.071301, + 0.164474, + 0.04232, + 0.05991, + 0.00299, 5e-06, 1e-06, 0.0, @@ -5034,12 +5092,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -5059,14 +5111,14 @@ 0.0, 0.0, 1e-06, - 5e-06, - 0.002561, - 0.024893, - 0.071195, - 0.164464, - 0.042143, - 0.049656, - 0.000878, + 6e-06, + 0.00334, + 0.025684, + 0.071301, + 0.164474, + 0.04232, + 0.05991, + 0.00299, 5e-06, 1e-06, 0.0, @@ -5131,12 +5183,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -5228,12 +5274,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -5264,28 +5304,22 @@ 0.0, 0.0, 0.0, - 1.1e-05, - 0.027926, - 0.098614, + 1e-05, + 0.025534, + 0.098603, 0.134531, 0.154287, 0.167382, - 0.540272, - 0.371993, - 0.097798, - 0.000567, - 2e-06, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.540399, + 0.38734, + 0.473014, + 0.560364, + 0.644127, + 0.719908, + 0.78494, + 0.838265, + 0.880383, + 0.874641, 0.0, 0.0, 0.0, @@ -5394,18 +5428,12 @@ 7.5e-05, 0.011454, 0.083154, - 0.162094, - 0.017291, - 0.037552, - 0.027155, - 0.019454, - 0.013881, - 0.009815, - 1.4e-05, - 0.0, - 0.0, - 0.0, - 0.0, + 0.162093, + 0.01729, + 0.036693, + 0.014472, + 6.8e-05, + 1.7e-05, 0.0, 0.0, 0.0, @@ -5519,12 +5547,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -5616,12 +5638,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -5686,18 +5702,12 @@ 0.006464, 0.058494, 0.079586, - 0.046701, - 0.055667, - 0.051164, - 0.046646, - 0.042358, - 0.038119, - 7e-05, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.046695, + 0.054393, + 0.027267, + 0.000164, + 5.2e-05, + 2e-06, 0.0, 0.0, 0.0, @@ -5783,18 +5793,12 @@ 0.006464, 0.058494, 0.079586, - 0.046701, - 0.055667, - 0.051164, - 0.046646, - 0.042358, - 0.038119, - 7e-05, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.046695, + 0.054393, + 0.027267, + 0.000164, + 5.2e-05, + 2e-06, 0.0, 0.0, 0.0, @@ -5880,18 +5884,12 @@ 0.006464, 0.058494, 0.079586, - 0.046701, - 0.055667, - 0.051164, - 0.046646, - 0.042358, - 0.038119, - 7e-05, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.046695, + 0.054393, + 0.027267, + 0.000164, + 5.2e-05, + 2e-06, 0.0, 0.0, 0.0, @@ -6004,12 +6002,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -6101,12 +6093,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -6115,14 +6101,14 @@ 0.0, 2e-06, 9e-06, - 0.004748, - 0.083612, - 0.072399, - 0.158792, - 0.042951, - 0.07936, - 0.006697, - 1.3e-05, + 0.004842, + 0.1041, + 0.138987, + 0.166081, + 0.025012, + 0.05592, + 0.004423, + 9e-06, 2e-06, 0.0, 0.0, @@ -6198,12 +6184,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -6227,23 +6207,17 @@ 0.0, 0.0, 0.0, - 4e-06, - 0.000633, - 0.049656, - 0.058442, - 0.193432, - 0.187813, - 0.192378, - 0.196064, - 0.120758, - 0.000101, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 4e-06, + 0.000635, + 0.05991, + 0.19916, + 0.203773, + 0.178895, + 0.187151, + 0.179629, + 0.110413, + 0.000101, + 0.0, 0.0, 0.0, 0.0, @@ -6331,28 +6305,22 @@ 0.0, 0.0, 0.0, - 6.6e-05, - 0.120758, - 0.300293, + 6e-05, + 0.110413, + 0.30026, 0.288489, 0.281904, 0.277539, - 0.153164, - 0.196129, - 0.036319, - 0.000148, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.1532, + 0.20422, + 0.175662, + 0.146545, + 0.118624, + 0.093364, + 0.071687, + 0.053912, + 0.039872, + 0.027895, 0.0, 0.0, 0.0, @@ -6428,28 +6396,22 @@ 0.0, 0.0, 0.0, - 6.6e-05, - 0.120758, - 0.300293, + 6e-05, + 0.110413, + 0.30026, 0.288489, 0.281904, 0.277539, - 0.153164, - 0.196129, - 0.036319, - 0.000148, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.1532, + 0.20422, + 0.175662, + 0.146545, + 0.118624, + 0.093364, + 0.071687, + 0.053912, + 0.039872, + 0.027895, 0.0, 0.0, 0.0, @@ -6586,12 +6548,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -6683,12 +6639,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -6780,12 +6730,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -6831,13 +6775,13 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 5e-06, - 0.057276, - 0.224806, + 0.007875, + 0.194822, + 0.200731, + 0.206695, + 0.212707, + 0.218759, + 0.224845, 0.230957, 0.237089, 0.238553, @@ -6877,12 +6821,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -6945,16 +6883,10 @@ 0.087879, 0.138649, 0.282584, - 0.040721, + 0.04072, 0.000404, 1e-05, - 3e-06, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 2e-06, 0.0, 0.0, 0.0, @@ -7010,28 +6942,22 @@ 0.0, 0.0, 0.0, - 6.6e-05, - 0.120758, - 0.300293, + 6e-05, + 0.110413, + 0.30026, 0.288489, 0.281904, 0.277539, - 0.153164, - 0.196129, - 0.036319, - 0.000148, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.1532, + 0.20422, + 0.175662, + 0.146545, + 0.118624, + 0.093364, + 0.071687, + 0.053912, + 0.039872, + 0.027895, 0.0, 0.0, 0.0, @@ -7168,12 +7094,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -7265,12 +7185,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -7362,12 +7276,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -7459,12 +7367,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -7556,12 +7458,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -7653,12 +7549,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -7722,19 +7612,13 @@ 2.2e-05, 0.004752, 0.048445, - 0.049221, - 0.070802, - 0.066546, - 0.068714, - 0.070673, - 0.072398, - 0.073499, - 0.000151, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.04922, + 0.070794, + 0.065023, + 0.03662, + 0.000248, + 9e-05, + 4e-06, 0.0, 0.0, 0.0, @@ -7847,12 +7731,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -7917,18 +7795,12 @@ 0.004617, 0.04759, 0.04701, - 0.073194, - 0.067608, - 0.070531, - 0.073341, - 0.075959, - 0.077964, - 0.000162, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.073186, + 0.066061, + 0.037588, + 0.000257, + 9.4e-05, + 4e-06, 0.0, 0.0, 0.0, @@ -8014,18 +7886,12 @@ 0.004617, 0.04759, 0.04701, - 0.073194, - 0.067608, - 0.070531, - 0.073341, - 0.075959, - 0.077964, - 0.000162, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.073186, + 0.066061, + 0.037588, + 0.000257, + 9.4e-05, + 4e-06, 0.0, 0.0, 0.0, @@ -8111,18 +7977,12 @@ 0.005031, 0.050183, 0.053916, - 0.066086, - 0.064462, - 0.065197, - 0.065602, - 0.065747, - 0.065299, - 0.000132, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.066079, + 0.062987, + 0.034745, + 0.00023, + 8.1e-05, + 3e-06, 0.0, 0.0, 0.0, @@ -8208,18 +8068,12 @@ 0.004889, 0.049309, 0.051522, - 0.068431, - 0.065497, - 0.066937, - 0.068095, - 0.068997, - 0.069282, - 0.000141, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.068423, + 0.063999, + 0.035672, + 0.000239, + 8.5e-05, + 3e-06, 0.0, 0.0, 0.0, @@ -8305,18 +8159,12 @@ 0.004889, 0.049309, 0.051522, - 0.068431, - 0.065497, - 0.066937, - 0.068095, - 0.068997, - 0.069282, - 0.000141, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.068423, + 0.063999, + 0.035672, + 0.000239, + 8.5e-05, + 3e-06, 0.0, 0.0, 0.0, @@ -8402,18 +8250,12 @@ 0.004889, 0.049309, 0.051522, - 0.068431, - 0.065497, - 0.066937, - 0.068095, - 0.068997, - 0.069282, - 0.000141, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.068423, + 0.063999, + 0.035672, + 0.000239, + 8.5e-05, + 3e-06, 0.0, 0.0, 0.0, @@ -8498,19 +8340,13 @@ 2.2e-05, 0.004752, 0.048445, - 0.049221, - 0.070802, - 0.066546, - 0.068714, - 0.070673, - 0.072398, - 0.073499, - 0.000151, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.04922, + 0.070794, + 0.065023, + 0.03662, + 0.000248, + 9e-05, + 4e-06, 0.0, 0.0, 0.0, @@ -8595,19 +8431,13 @@ 2.2e-05, 0.004752, 0.048445, - 0.049221, - 0.070802, - 0.066546, - 0.068714, - 0.070673, - 0.072398, - 0.073499, - 0.000151, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.04922, + 0.070794, + 0.065023, + 0.03662, + 0.000248, + 9e-05, + 4e-06, 0.0, 0.0, 0.0, @@ -8692,19 +8522,13 @@ 2.2e-05, 0.004752, 0.048445, - 0.049221, - 0.070802, - 0.066546, - 0.068714, - 0.070673, - 0.072398, - 0.073499, - 0.000151, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.04922, + 0.070794, + 0.065023, + 0.03662, + 0.000248, + 9e-05, + 4e-06, 0.0, 0.0, 0.0, @@ -8789,19 +8613,13 @@ 2.2e-05, 0.004752, 0.048445, - 0.049221, - 0.070802, - 0.066546, - 0.068714, - 0.070673, - 0.072398, - 0.073499, - 0.000151, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.04922, + 0.070794, + 0.065023, + 0.03662, + 0.000248, + 9e-05, + 4e-06, 0.0, 0.0, 0.0, @@ -8886,19 +8704,13 @@ 2.2e-05, 0.004752, 0.048445, - 0.049221, - 0.070802, - 0.066546, - 0.068714, - 0.070673, - 0.072398, - 0.073499, - 0.000151, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 0.04922, + 0.070794, + 0.065023, + 0.03662, + 0.000248, + 9e-05, + 4e-06, 0.0, 0.0, 0.0, @@ -9011,12 +8823,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -9108,12 +8914,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -9124,16 +8924,16 @@ 0.0, 0.0, 0.0, - 0.0, + 1e-06, 4e-06, - 0.000645, - 0.07936, - 0.44599, - 0.499766, - 0.482821, - 0.147089, - 0.003111, - 5e-06, + 0.000376, + 0.05592, + 0.294555, + 0.333157, + 0.326718, + 0.142852, + 0.00371, + 6e-06, 1e-06, 0.0, 0.0, @@ -9205,12 +9005,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -9302,12 +9096,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -9399,12 +9187,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -9413,14 +9195,14 @@ 0.0, 4e-06, 1.7e-05, - 0.007912, - 0.116923, - 0.124695, - 0.139667, - 0.030489, - 0.055033, - 0.003897, - 6e-06, + 0.008068, + 0.145574, + 0.239382, + 0.146077, + 0.017755, + 0.038778, + 0.002574, + 4e-06, 1e-06, 0.0, 0.0, @@ -9496,12 +9278,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -9593,12 +9369,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -9690,12 +9460,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -9714,24 +9478,18 @@ 0.0, 0.0, 0.0, - 1e-06, - 5e-06, - 0.002561, - 0.024893, - 0.071195, - 0.164464, - 0.042143, - 0.049656, - 0.000878, - 5e-06, - 1e-06, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, + 1e-06, + 6e-06, + 0.00334, + 0.025684, + 0.071301, + 0.164474, + 0.04232, + 0.05991, + 0.00299, + 5e-06, + 1e-06, + 0.0, 0.0, 0.0, 0.0, @@ -9817,14 +9575,14 @@ 0.0, 0.0, 4e-06, - 0.000633, - 0.049656, - 0.058442, - 0.193432, - 0.187813, - 0.192378, - 0.196064, - 0.120758, + 0.000635, + 0.05991, + 0.19916, + 0.203773, + 0.178895, + 0.187151, + 0.179629, + 0.110413, 0.000101, 0.0, 0.0, @@ -9884,12 +9642,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -9981,12 +9733,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -9995,14 +9741,14 @@ 0.0, 2e-06, 9e-06, - 0.004748, - 0.083612, - 0.072399, - 0.158792, - 0.042951, - 0.07936, - 0.006697, - 1.3e-05, + 0.004842, + 0.1041, + 0.138987, + 0.166081, + 0.025012, + 0.05592, + 0.004423, + 9e-06, 2e-06, 0.0, 0.0, @@ -10078,12 +9824,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -10175,12 +9915,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -10205,14 +9939,14 @@ 0.0, 0.0, 4e-06, - 0.000633, - 0.049656, - 0.058442, - 0.193432, - 0.187813, - 0.192378, - 0.196064, - 0.120758, + 0.000635, + 0.05991, + 0.19916, + 0.203773, + 0.178895, + 0.187151, + 0.179629, + 0.110413, 0.000101, 0.0, 0.0, @@ -10272,12 +10006,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -10369,12 +10097,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -10466,12 +10188,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -10563,12 +10279,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -10660,12 +10370,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -10757,12 +10461,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -10777,15 +10475,15 @@ 0.0, 0.0, 0.0, - 2e-06, - 1.3e-05, - 0.00725, - 0.147089, - 0.207189, - 0.201851, - 0.170555, - 0.024893, - 0.001069, + 1e-06, + 9e-06, + 0.004906, + 0.142852, + 0.247064, + 0.2498, + 0.222409, + 0.025684, + 0.001071, 4e-06, 0.0, 0.0, @@ -10854,12 +10552,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -10879,14 +10571,14 @@ 0.0, 0.0, 1e-06, - 5e-06, - 0.002561, - 0.024893, - 0.071195, - 0.164464, - 0.042143, - 0.049656, - 0.000878, + 6e-06, + 0.00334, + 0.025684, + 0.071301, + 0.164474, + 0.04232, + 0.05991, + 0.00299, 5e-06, 1e-06, 0.0, @@ -10951,12 +10643,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -10965,14 +10651,14 @@ 0.0, 2e-06, 9e-06, - 0.004748, - 0.083612, - 0.072399, - 0.158792, - 0.042951, - 0.07936, - 0.006697, - 1.3e-05, + 0.004842, + 0.1041, + 0.138987, + 0.166081, + 0.025012, + 0.05592, + 0.004423, + 9e-06, 2e-06, 0.0, 0.0, @@ -11045,6 +10731,14 @@ 0.0, 0.0, 0.0, + 0.0, + 0.0, + 0.0, + 0.0 + ] + }, + "KC344525.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -11054,11 +10748,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344524.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -11136,6 +10825,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344526.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -11151,11 +10845,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344525.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -11227,6 +10916,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344527.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -11248,11 +10942,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344526.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -11316,6 +11005,13 @@ 0.0, 0.0, 0.0, + 0.0, + 0.0, + 0.0 + ] + }, + "KC344528.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -11345,11 +11041,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344527.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -11407,6 +11098,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344529.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -11442,11 +11138,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344528.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -11498,6 +11189,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KC344530.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -11539,11 +11235,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344529.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -11587,6 +11278,13 @@ 0.0, 0.0, 0.0, + 0.0, + 0.0, + 0.0 + ] + }, + "KC344531.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -11636,11 +11334,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344530.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -11678,6 +11371,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KF985959.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -11733,11 +11431,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KC344531.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -11769,6 +11462,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KJ410017.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -11830,11 +11528,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KF985959.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -11859,6 +11552,12 @@ 0.0, 0.0, 0.0, + 0.0, + 0.0 + ] + }, + "KP282671.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -11927,11 +11626,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KJ410017.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -11950,6 +11644,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KR260736.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -12024,11 +11723,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KP282671.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -12041,6 +11735,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KR260737.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -12121,17 +11820,17 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KR260736.1": { - "frequencies": [ 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0 + ] + }, + "KU059753.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -12221,7 +11920,7 @@ 0.0 ] }, - "KR260737.1": { + "KU059754.1": { "frequencies": [ 0.0, 0.0, @@ -12287,19 +11986,6 @@ 0.0, 0.0, 0.0, - 0.002233, - 0.405161, - 0.424603, - 0.443444, - 0.462449, - 0.447914, - 0.506162, - 0.541998, - 0.539013, - 0.558007, - 0.575681, - 0.027025, - 3e-06, 0.0, 0.0, 0.0, @@ -12315,17 +12001,18 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KU059753.1": { - "frequencies": [ 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, + 0.0, + 0.0 + ] + }, + "KU059755.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -12415,7 +12102,7 @@ 0.0 ] }, - "KU059754.1": { + "KU059756.1": { "frequencies": [ 0.0, 0.0, @@ -12503,16 +12190,10 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "KU059755.1": { + "KU978806.1": { "frequencies": [ 0.0, 0.0, @@ -12599,6 +12280,12 @@ 0.0, 0.0, 0.0, + 0.0, + 0.0 + ] + }, + "L00930.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -12606,11 +12293,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KU059756.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -12690,6 +12372,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "L01442.2": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -12703,11 +12390,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "KU978806.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -12781,6 +12463,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "L04653.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -12800,11 +12487,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "L00930.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -12872,9 +12554,24 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "MF459684.1": { + "frequencies": [ 0.0, 0.0, 0.0, + 0.0002, + 0.010811, + 0.029709, + 0.011747, + 0.428029, + 0.256932, + 0.04582, + 0.000224, + 0.000107, + 3e-06, 0.0, 0.0, 0.0, @@ -12897,11 +12594,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "L01442.2": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -12953,6 +12645,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "MF590066.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -12994,11 +12691,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "L01443.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -13023,6 +12715,17 @@ 0.0, 0.0, 0.0, + 0.000491, + 0.575397, + 0.999733, + 1.0, + 1.0, + 1.0, + 0.999955, + 0.985866, + 0.196262, + 0.000854, + 1e-06, 0.0, 0.0, 0.0, @@ -13033,6 +12736,11 @@ 0.0, 0.0, 0.0, + 0.0 + ] + }, + "MF993533.1": { + "frequencies": [ 0.0, 0.0, 0.0, @@ -13091,11 +12799,6 @@ 0.0, 0.0, 0.0, - 0.0 - ] - }, - "L04653.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -13109,11 +12812,38 @@ 0.0, 0.0, 0.0, + 4.5e-05, + 0.014134, + 0.803738, + 0.999142, + 0.999962, + 0.999132, + 0.813575, + 0.09902, + 0.000273, + 3.6e-05, + 2e-06, 0.0, 0.0, 0.0, 0.0, + 0.0 + ] + }, + "MH086244.1": { + "frequencies": [ 0.0, + 2e-06, + 9e-06, + 0.004842, + 0.1041, + 0.138987, + 0.166081, + 0.025012, + 0.05592, + 0.004423, + 9e-06, + 2e-06, 0.0, 0.0, 0.0, @@ -13191,7 +12921,7 @@ 0.0 ] }, - "MF459684.1": { + "MH086245.1": { "frequencies": [ 0.0, 0.0, @@ -13202,6 +12932,16 @@ 0.0, 0.0, 0.0, + 1e-06, + 9e-06, + 0.004906, + 0.142852, + 0.247064, + 0.2498, + 0.222409, + 0.025684, + 0.001071, + 4e-06, 0.0, 0.0, 0.0, @@ -13269,28 +13009,23 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 1.2e-05, - 0.010777, - 0.203062, - 0.245207, - 0.21655, - 0.346833, - 0.443739, - 0.191861, - 0.005383, - 9e-06, - 0.0, 0.0 ] }, - "MF590066.1": { + "MH086246.1": { "frequencies": [ 0.0, + 2e-06, + 9e-06, + 0.004842, + 0.1041, + 0.138987, + 0.166081, + 0.025012, + 0.05592, + 0.004423, + 9e-06, + 2e-06, 0.0, 0.0, 0.0, @@ -13354,23 +13089,6 @@ 0.0, 0.0, 0.0, - 0.003528, - 0.592828, - 0.575397, - 0.556556, - 0.537551, - 0.552086, - 0.493838, - 0.458002, - 0.460987, - 0.441992, - 0.42232, - 0.018361, - 2e-06, - 0.0, - 0.0, - 0.0, - 0.0, 0.0, 0.0, 0.0, @@ -13385,30 +13103,24 @@ 0.0 ] }, - "MH086244.1": { + "MH086247.1": { "frequencies": [ - 0.0, - 2e-06, - 9e-06, - 0.004748, - 0.083612, - 0.072399, - 0.158792, - 0.042951, - 0.07936, - 0.006697, - 1.3e-05, - 2e-06, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, + 1e-06, + 4e-06, + 0.000376, + 0.05592, + 0.294555, + 0.333157, + 0.326718, + 0.142852, + 0.00371, + 6e-06, + 1e-06, 0.0, 0.0, 0.0, @@ -13482,7 +13194,7 @@ 0.0 ] }, - "MH086245.1": { + "MH086248.1": { "frequencies": [ 0.0, 0.0, @@ -13493,15 +13205,15 @@ 0.0, 0.0, 0.0, - 2e-06, - 1.3e-05, - 0.00725, - 0.147089, - 0.207189, - 0.201851, - 0.170555, - 0.024893, - 0.001069, + 1e-06, + 9e-06, + 0.004906, + 0.142852, + 0.247064, + 0.2498, + 0.222409, + 0.025684, + 0.001071, 4e-06, 0.0, 0.0, @@ -13570,33 +13282,11 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, - "MH086246.1": { + "MH086249.1": { "frequencies": [ - 0.0, - 2e-06, - 9e-06, - 0.004748, - 0.083612, - 0.072399, - 0.158792, - 0.042951, - 0.07936, - 0.006697, - 1.3e-05, - 2e-06, - 0.0, - 0.0, - 0.0, - 0.0, 0.0, 0.0, 0.0, @@ -13606,6 +13296,16 @@ 0.0, 0.0, 0.0, + 1e-06, + 9e-06, + 0.004906, + 0.142852, + 0.247064, + 0.2498, + 0.222409, + 0.025684, + 0.001071, + 4e-06, 0.0, 0.0, 0.0, @@ -13676,7 +13376,7 @@ 0.0 ] }, - "MH086247.1": { + "MK028848.1": { "frequencies": [ 0.0, 0.0, @@ -13684,16 +13384,10 @@ 0.0, 0.0, 0.0, - 4e-06, - 0.000645, - 0.07936, - 0.44599, - 0.499766, - 0.482821, - 0.147089, - 0.003111, - 5e-06, - 1e-06, + 0.0, + 0.0, + 0.0, + 0.0, 0.0, 0.0, 0.0, @@ -13773,7 +13467,7 @@ 0.0 ] }, - "MH086248.1": { + "MK028849.1": { "frequencies": [ 0.0, 0.0, @@ -13784,16 +13478,10 @@ 0.0, 0.0, 0.0, - 2e-06, - 1.3e-05, - 0.00725, - 0.147089, - 0.207189, - 0.201851, - 0.170555, - 0.024893, - 0.001069, - 4e-06, + 0.0, + 0.0, + 0.0, + 0.0, 0.0, 0.0, 0.0, @@ -13870,7 +13558,7 @@ 0.0 ] }, - "MH086249.1": { + "MK028850.1": { "frequencies": [ 0.0, 0.0, @@ -13881,16 +13569,10 @@ 0.0, 0.0, 0.0, - 2e-06, - 1.3e-05, - 0.00725, - 0.147089, - 0.207189, - 0.201851, - 0.170555, - 0.024893, - 0.001069, - 4e-06, + 0.0, + 0.0, + 0.0, + 0.0, 0.0, 0.0, 0.0, @@ -13967,7 +13649,7 @@ 0.0 ] }, - "MK028848.1": { + "MK028851.1": { "frequencies": [ 0.0, 0.0, @@ -14054,17 +13736,11 @@ 0.0, 0.0, 0.0, - 1e-06, - 6e-06, - 0.00414, - 0.137979, - 0.236287, - 0.246978, - 0.057554, - 0.101829 + 0.0, + 0.0 ] }, - "MK028849.1": { + "MK028853.1": { "frequencies": [ 0.0, 0.0, @@ -14151,17 +13827,11 @@ 0.0, 0.0, 0.0, - 1e-06, - 6e-06, - 0.00414, - 0.137979, - 0.236287, - 0.246978, - 0.057554, - 0.101829 + 0.0, + 0.0 ] }, - "MK028850.1": { + "MK028854.1": { "frequencies": [ 0.0, 0.0, @@ -14248,17 +13918,11 @@ 0.0, 0.0, 0.0, - 1e-06, - 6e-06, - 0.00414, - 0.137979, - 0.236287, - 0.246978, - 0.057554, - 0.101829 + 0.0, + 0.0 ] }, - "MK028853.1": { + "MK088531.1": { "frequencies": [ 0.0, 0.0, @@ -14345,17 +14009,11 @@ 0.0, 0.0, 0.0, - 1e-06, - 6e-06, - 0.00414, - 0.137979, - 0.236287, - 0.246978, - 0.057554, - 0.101829 + 0.0, + 0.0 ] }, - "MK088531.1": { + "MK796243.1": { "frequencies": [ 0.0, 0.0, @@ -14431,29 +14089,28 @@ 0.0, 0.0, 0.0, + 4e-06, + 3.7e-05, + 0.000868, + 0.186425, + 0.90098, + 0.999727, + 0.999963, + 0.999434, + 0.810487, + 0.010209, + 2.4e-05, 0.0, + 0.0 + ] + }, + "MT586033.1": { + "frequencies": [ 0.0, 0.0, 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.000116, - 0.010463, - 0.043931, - 0.012071, - 0.769783, - 0.592684 - ] - }, - "MK796243.1": { - "frequencies": [ 0.0, 0.0, 0.0, @@ -14528,17 +14185,6 @@ 0.0, 0.0, 0.0, - 0.001999, - 0.954614, - 0.999995, - 1.0, - 1.0, - 1.0, - 1.0, - 0.999915, - 0.937801, - 0.018734, - 2.4e-05, 0.0, 0.0, 0.0, @@ -14549,7 +14195,7 @@ 0.0 ] }, - "MZ399798.1": { + "MW809725.1": { "frequencies": [ 0.0, 0.0, @@ -14608,6 +14254,17 @@ 0.0, 0.0, 0.0, + 1e-06, + 5e-06, + 0.000111, + 0.022878, + 0.467072, + 0.996491, + 0.998762, + 0.99995, + 0.999508, + 0.424603, + 0.000267, 0.0, 0.0, 0.0, @@ -14626,27 +14283,10 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 3.6e-05, - 0.025711, - 0.389102, - 0.377385, - 0.391723, - 0.32657, - 0.269793, - 0.12288, - 0.002769, - 4e-06, - 0.0, 0.0 ] }, - "MZ399799.1": { + "OK539813.1": { "frequencies": [ 0.0, 0.0, @@ -14728,19 +14368,13 @@ 0.0, 0.0, 0.0, - 0.0, - 3.6e-05, - 0.025711, - 0.389102, - 0.377385, - 0.391723, - 0.32657, - 0.269793, - 0.12288, - 0.002769, - 4e-06, - 0.0, - 0.0 + 1e-06, + 0.000564, + 0.189513, + 0.989791, + 0.999976, + 1.0, + 1.0 ] }, "U34999.1": { @@ -14831,12 +14465,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -14928,12 +14556,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -15025,12 +14647,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -15122,12 +14738,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -15219,12 +14829,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -15316,12 +14920,6 @@ 0.0, 0.0, 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, - 0.0, 0.0 ] }, @@ -15336,16 +14934,10 @@ 0.0, 0.0, 0.0, - 1e-06, - 8e-06, - 0.005187, - 0.117431, - 0.164505, - 0.191956, - 0.233149, - 0.030808, - 0.001476, - 7e-06, + 0.0, + 0.0, + 0.0, + 0.0, 0.0, 0.0, 0.0, @@ -15424,7 +15016,7 @@ }, "generated_by": { "program": "augur", - "version": "13.0.3" + "version": "19.1.0" }, "pivots": [ 1996.0, @@ -15513,12 +15105,6 @@ 2016.75, 2017.0, 2017.25, - 2017.5, - 2017.75, - 2018.0, - 2018.25, - 2018.5, - 2018.75, - 2019.0 + 2017.5 ] } \ No newline at end of file diff --git a/auspice/automated_lineage_designations.tsv b/auspice/automated_lineage_designations.tsv deleted file mode 100644 index 4a273c3..0000000 --- a/auspice/automated_lineage_designations.tsv +++ /dev/null @@ -1,146 +0,0 @@ -sample lineage -KU059753.1 A.8 -KC344430.1 A.8 -KC344528.1 A -U55342.2 A -J04332.1 A.7 -L01442.2 A.7 -KC344516.1 A -U55345.2 A -KC344519.1 A.6 -KC344477.1 A.6 -KC344512.1 A -KC344484.1 A.5 -KJ410017.1 A.1 -AY741139.1 A.1 -L04653.1 A -MK028850.1 A.5.0 -KC344524.1 A.5.0 -KC344522.1 A.4 -L01443.1 A.1.1 -KR260736.1 A.1 -KC344485.2 A.1 -AF375051.1 A.2 -KC344525.1 A.4.0 -KC344486.1 A.4.0 -KC344520.1 A.3 -KC344502.1 A -MZ399799.1 A.1.1.0 -MZ399798.1 A.1.1.0 -KC344514.1 A.3.0 -KC344487.1 A.3.0 -KU978806.1 A.1.0 -KF985959.1 A.2.1 -U55350.2 A.2.1 -KP282671.1 A.2.0 -U55347.2 A.2.0 -KC344521.1 A.0 -KC344508.1 A.0 -KU059754.1 A.1.0.2 -KU059755.1 A.1.0.2 -KC344505.2 A.1.0.1 -AF069903.1 A.1.0.1 -KC344517.1 A.1.0.0 -AY986475.1 A.2.0.0 -AY973944.1 A.2.0.0 -KC344461.2 A.0 -KC344509.1 A.0 -KU059756.1 A.1.0.0.0 -KC344483.2 A.1.0.0.0 -KC344523.1 A.0 -U55362.2 A.0 -KC344429.1 A.0.1 -KC344462.1 A.0.1 -KC344459.1 A.0.1.0 -KC344460.1 A.0.1.0 -AF004472.2 A.0.0.2 -AF004458.2 A.0.0.2 -U55360.2 A.0.0.1 -AF004459.2 A.0.0.1 -AF100566.1 A.0.0.0 -MF459684.1 A.0.0.0 -KC344513.1 A.0.0.0 -KC344439.1 B -KC344458.1 B.3 -KC344444.1 B.3 -KC344457.1 B -KC344433.1 B -MK796243.1 B.3.1 -KC344441.1 B.3.1 -MK028849.1 B.1.3 -U34999.1 B.1.3 -KC344527.1 B.1 -KC344466.1 B.1 -KC344446.1 B.2 -KC344463.1 B -KC344456.1 B.3.0.1 -KC344443.1 B.3.0.1 -KC344455.1 B.3.0.0 -KC344442.1 B.3.0.0 -KC344454.1 B.1.1.1 -KC344436.1 B.1.1.1 -KC344435.1 B.1.1 -KC344437.1 B.1.2 -AF448537.1 B.1 -KC344467.1 B.1.1.0 -KC344434.1 B.1.1.0 -AF448539.1 B.1.2.0 -KC344438.1 B.1.2.0 -KC344515.1 B.1 -KC344448.1 B.2.1 -KC344445.1 B.2.1 -KC344431.1 B.2.0 -KC344449.1 B.0 -KC344447.1 B.2.0.0 -KC344440.1 B.2.0.0 -KC344481.1 B.0 -KC344451.1 B.0 -AF448538.1 B.1.0 -AY823299.1 B.1.0 -KC344468.1 B.0.2 -KC344480.1 B.0 -KC344529.1 B.0.3 -AF448535.1 B.1.0.1 -AF448536.1 B.1.0.1 -KC344465.1 B.1.0.0 -KC344494.1 B.0.2.0 -KC344495.1 B.0.2.0 -KC344489.1 B.0.2.0 -KC344453.1 B.0.1 -KC344531.1 B.0.3.0 -KC344530.1 B.0.3.0 -KC344450.1 B.0.0 -KC344493.1 B.0.0 -KC344482.1 B.1.0.0.0 -KC344464.1 B.1.0.0.0 -KC344479.1 B.0.1 -KC344499.1 B.0.0 -KC344469.1 B.0.0 -KC344452.1 B.0.1.0 -KC344478.1 B.0.1.0 -KC344500.1 B.0.0.0 -KC344470.1 B.0.0.0 -KC344501.1 B.0.0.0 -KC344491.1 B.0.0.0 -KC344496.1 B.0.0.1 -KC344497.1 B.0.0.1 -KC344492.1 B.0.0.1.0 -KC344498.1 B.0.0.1.0 -KC344472.1 C -KC344473.2 C -L00930.1 C -KC344507.2 C -KC344503.2 C -KC344506.1 C.2 -MF590066.1 C -KC344510.1 C.1 -KC344488.2 C.2 -KC344526.1 C.0 -KC344511.1 C.1 -KC344518.1 C.2.0 -KC344471.1 C.2.0 -KC344490.1 C.0 -KC344474.1 C.1.0 -KC344475.1 C.1.0 -DQ390224.2 C.0.0 -KC344504.2 C.0.0 diff --git a/auspice/veev.json b/auspice/veev.json deleted file mode 100644 index 0ee6530..0000000 --- a/auspice/veev.json +++ /dev/null @@ -1,88508 +0,0 @@ -{ - "meta": { - "colorings": [ - { - "key": "gt", - "title": "Genotype", - "type": "categorical" - }, - { - "key": "subtype", - "title": "Subtype", - "type": "categorical" - }, - { - "key": "host", - "title": "Host", - "type": "categorical" - }, - { - "key": "num_date", - "title": "Sampling date", - "type": "continuous" - }, - { - "key": "region", - "title": "Region", - "type": "categorical" - }, - { - "key": "country", - "title": "Country", - "type": "categorical" - }, - { - "key": "year", - "title": "Year", - "type": "categorical" - }, - { - "key": "author", - "title": "Author", - "type": "categorical" - }, - { - "key": "GRI Lineage Level 0", - "title": "GRI Lineage Level 0", - "type": "categorical" - }, - { - "key": "GRI Lineage Level 1", - "title": "GRI Lineage Level 1", - "type": "categorical" - }, - { - "key": "GRI Lineage Level 2", - "title": "GRI Lineage Level 2", - "type": "categorical" - }, - { - "key": "GRI Lineage Level 3", - "title": "GRI Lineage Level 3", - "type": "categorical" - }, - { - "key": "GRI Lineage Level 4", - "title": "GRI Lineage Level 4", - "type": "categorical" - }, - { - "key": "GRI Lineage Level 5", - "title": "GRI Lineage Level 5", - "type": "categorical" - } - ], - "description": "*This work is made possible by the open sharing of genetic data by research groups from all over the world. We gratefully acknowledge their contributions. We thank Barbara Rath and Michael Passegger for their help with a preliminary version of this build.* \n", - "display_defaults": { - "color_by": "subtype", - "geo_resolution": "place_of_collection", - "map_triplicate": true - }, - "filters": [ - "country", - "region", - "subtype", - "host", - "year", - "author" - ], - "genome_annotations": { - "6k": { - "end": 10000, - "seqid": "11036/reference.gb", - "start": 9833, - "strand": "+", - "type": "CDS" - }, - "CP": { - "end": 8386, - "seqid": "11036/reference.gb", - "start": 7562, - "strand": "+", - "type": "CDS" - }, - "E1": { - "end": 11326, - "seqid": "11036/reference.gb", - "start": 10001, - "strand": "+", - "type": "CDS" - }, - "E2": { - "end": 9832, - "seqid": "11036/reference.gb", - "start": 8564, - "strand": "+", - "type": "CDS" - }, - "E3": { - "end": 8563, - "seqid": "11036/reference.gb", - "start": 8387, - "strand": "+", - "type": "CDS" - }, - "nsP1": { - "end": 1649, - "seqid": "11036/reference.gb", - "start": 45, - "strand": "+", - "type": "CDS" - }, - "nsP2": { - "end": 4031, - "seqid": "11036/reference.gb", - "start": 1650, - "strand": "+", - "type": "CDS" - }, - "nsP3": { - "end": 5702, - "seqid": "11036/reference.gb", - "start": 4032, - "strand": "+", - "type": "CDS" - }, - "nsP4": { - "end": 7520, - "seqid": "11036/reference.gb", - "start": 5703, - "strand": "+", - "type": "CDS" - }, - "nuc": { - "end": 11444, - "seqid": "11036/reference.gb", - "start": 1, - "strand": "+", - "type": "source" - } - }, - "geo_resolutions": [ - { - "demes": { - "Argentina": { - "latitude": -38.416097, - "longitude": -63.616672 - }, - "Australia": { - "latitude": -25.274398, - "longitude": 133.775136 - }, - "Belize": { - "latitude": 17.189877, - "longitude": -88.49765 - }, - "Colombia": { - "latitude": 4.570868, - "longitude": -74.297333 - }, - "Costa_Rica": { - "latitude": 9.748917, - "longitude": -83.753428 - }, - "Ecuador": { - "latitude": -1.831239, - "longitude": -78.183406 - }, - "Guatemala": { - "latitude": 15.783471, - "longitude": -90.230759 - }, - "Honduras": { - "latitude": 15.199999, - "longitude": -86.241905 - }, - "Mexico": { - "latitude": 23.634501, - "longitude": -102.552784 - }, - "Nicaragua": { - "latitude": 12.865416, - "longitude": -85.207229 - }, - "Panama": { - "latitude": 8.537981, - "longitude": -80.782127 - }, - "Peru": { - "latitude": -9.189967, - "longitude": -75.015152 - }, - "USA": { - "latitude": 37.09024, - "longitude": -95.712891 - } - }, - "key": "country" - }, - { - "demes": { - "AUSNZ": { - "latitude": -29.529425, - "longitude": 146.373191 - }, - "LA,C": { - "latitude": -13, - "longitude": -59 - } - }, - "key": "region" - }, - { - "demes": { - "Argentina": { - "latitude": -38.416097, - "longitude": -63.616672 - }, - "Australia": { - "latitude": -25.274398, - "longitude": 133.775136 - }, - "Belize": { - "latitude": 17.189877, - "longitude": -88.49765 - }, - "Colombia": { - "latitude": 4.570868, - "longitude": -74.297333 - }, - "Costa_Rica": { - "latitude": 9.748917, - "longitude": -83.753428 - }, - "Ecuador": { - "latitude": -1.831239, - "longitude": -78.183406 - }, - "Guatemala": { - "latitude": 15.783471, - "longitude": -90.230759 - }, - "Honduras": { - "latitude": 15.199999, - "longitude": -86.241905 - }, - "Mexico": { - "latitude": 23.634501, - "longitude": -102.552784 - }, - "Nicaragua": { - "latitude": 12.865416, - "longitude": -85.207229 - }, - "Panama": { - "latitude": 8.537981, - "longitude": -80.782127 - }, - "Peru": { - "latitude": -9.189967, - "longitude": -75.015152 - }, - "USA": { - "latitude": 37.09024, - "longitude": -95.712891 - }, - "Venezuela": { - "latitude": 6.42375, - "longitude": -66.58973 - } - }, - "key": "place_of_collection" - } - ], - "maintainers": [ - { - "name": "Michael T. Wolfinger", - "url": "https://michaelwolfinger.com" - }, - { - "name": "Adriano de Bernardi Schneider", - "url": "https://adrianoschneider.com/" - }, - { - "name": "Jakob McBroome", - "url": "mailto:jmcbroome@gmail.com" - } - ], - "panels": [ - "tree", - "map", - "frequencies", - "entropy" - ], - "title": "Molecular epidemiology of Venezuelan equine encephalitis virus", - "updated": "2022-12-09" - }, - "tree": { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "Root" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: S6T, I20L, V32I, L35I, V42F, V48L; CP: M13A, F19Y, A20P, F27Y, M36L, D55E, A56S, A70P, P71Q, K73A, E74A, N75T, R76P, G77I, Q78K, G80A, K81Q, K84N, N85G, Q86K, K92P, T93K, P95A, P96V, H97Q, E100N, N102P, G103A, N104S, A108P, D160E, V161T, S171T, K190R, S201N, N259T; E1: A11V, Y15F, P28A, K37Q, L38I, V42L, M55L, I60V, P70E, T71V, Y72T, Q77K, T101S, L115A, S128A, V129A, G138A, E139D, H140Q, V159I, K160R, G182E, I184V, H196T, I208T, S209T, S211T, A226S, A228T, I229V, F253Y, Y262K, T263V, I266N, R267Q, A268T, E269Q, T288N, R289F, S291F, A298N, T317S, S323T, S325A, V332I, L339V, K340R, A343T, E345D, A347V, A352L, I354V, S372T, L410I, I420L, I421V, I422V, V426I, T429I, M433T, N438G, K440R, H441R, N442Y; E2: R13K, R18K, A35E, K37R, V45I, L47I, S57P, N60G, L61V, G63S, D69N, M70L, H71Q, T73N, Q81E, A106E, I110L, S118T, E128K, N132I, A147T, E148D, Q149H, Q152R, N160K, S184G, S185A, H187Q, T189N, S195N, E201N, K206Q, I211V, N212S, A214V, Q216K, S218N, K222Q, D224N, Q225R, N233S, Y238F, A262S, M275V, I276V, T277S, K290N, Q299H, D301G, H305Q, A315V, R317K, T320S, V321I, L351M, V355I, I356V, H361Y, I368V, L369V, T379I, V382I, T386L, W387C, F389L, M408L, L410I, V414L, T420P, A421T; E3: T5A, M6V, A28S, V36E, V38I, E45V, E48D, A49S, K57Q; nsP1: E28G, H76N, E106D, E111G, K114Q, M116L, K117A, E118D, S124Q, D125E, D127S, T130R, T132S, V147I, M225L, N238T, V239I, L240I, K269T, Q270H, K299T, K396R, E403D, R424K, I440V, I441V, N444P, I455V, T466D, R469K, E474K, H475P, S479V, I482V, A484D, Q488G, D495A, V500I, A514T; nsP2: A16S, D19E, V26I, S39A, P43A, V70I, H75T, Q80P, T108V, S126G, E127D, H128Y, T148S, L152M, V157I, D158E, R170K, Y177H, K223H, M224A, K225R, H244Y, I269V, R270K, R328K, P334Q, K338Q, D352E, T405N, D441E, T443S, I446L, R458K, L461M, K463E, D465N, T467A, D492S, T495A, E496D, D502E, Y503N, L532I, R543K, L558I, K560M, E561D, A578T, V582A, Y583L, T587S, T589A, N592A, V602M, H613N, T615S, H619P, A624T, E639D, P644T, R654S, A661T, G669A, K686R, I720V, I736V, S743A, V750I, K767R, A768T, T785S, R788N, L789F; nsP3: T15E, E16D, K26R, A62K, V79I, I92V, I95L, L132M, M150T, S171A, V173L, A178V, T197I, S198T, M218V, I227N, V235I, S263N, H312C, K328R, A331P, E332R, T333P, P334L, E341K, P342L, E351V, T352E, P353R, E354A, Q355G, A357P, L358A, A359S, T360N, D362E, T364A, R365T, A366E, R367E, T368N, P369F, P371T, I373S, I374V, E375V, E376D, E377S, E378V, E379V, D380S, I382E, M384T, L385A, S386E, E387T, G388N, P389L, H391D, V393T, H394Q, Q395S, G402A, P403L, P404D, S405A, V406F, F407L, S408R, S410T, V421A, L424I, V426L, S441L, A442S, N445K, S446F, Y447S, F448S, A449T, K450S, L452S, E453D, F454A, L455G, A456I, V459I, V465I, N468Q, P469A, K473R, S484N, R485*, R489S, T490A, V493S, S494P, S514I, R515H, P517R, S518R, R519Q, A521G, V527A, F553Y, D554E; nsP4: E31L, E33D, I34D, S35V, E43N, R68K, R78M, I80M, Q82R, A90T, E91D, G92N, H101Y, A108S, A113S, S116C, A126V, I141T, S155T, E238D, K241R, E242D, V253T, N275C, I341V, P362H, C365Q, P397Q, V440I, S513T, L549V, H550F, S553A, T554E, V559A, F562S, P563V, T575I, M583A, T586A, S590R, S591N, E593A, S594T, S596K, Y597H, A601N, T604H" - }, - "mutations": { - "6k": [ - "S6T", - "I20L", - "V32I", - "L35I", - "V42F", - "V48L" - ], - "CP": [ - "M13A", - "F19Y", - "A20P", - "F27Y", - "M36L", - "D55E", - "A56S", - "A70P", - "P71Q", - "K73A", - "E74A", - "N75T", - "R76P", - "G77I", - "Q78K", - "G80A", - "K81Q", - "K84N", - "N85G", - "Q86K", - "K92P", - "T93K", - "P95A", - "P96V", - "H97Q", - "E100N", - "N102P", - "G103A", - "N104S", - "A108P", - "D160E", - "V161T", - "S171T", - "K190R", - "S201N", - "N259T" - ], - "E1": [ - "A11V", - "Y15F", - "P28A", - "K37Q", - "L38I", - "V42L", - "M55L", - "I60V", - "P70E", - "T71V", - "Y72T", - "Q77K", - "T101S", - "L115A", - "S128A", - "V129A", - "G138A", - "E139D", - "H140Q", - "V159I", - "K160R", - "G182E", - "I184V", - "H196T", - "I208T", - "S209T", - "S211T", - "A226S", - "A228T", - "I229V", - "F253Y", - "Y262K", - "T263V", - "I266N", - "R267Q", - "A268T", - "E269Q", - "T288N", - "R289F", - "S291F", - "A298N", - "T317S", - "S323T", - "S325A", - "V332I", - "L339V", - "K340R", - "A343T", - "E345D", - "A347V", - "A352L", - "I354V", - "S372T", - "L410I", - "I420L", - "I421V", - "I422V", - "V426I", - "T429I", - "M433T", - "N438G", - "K440R", - "H441R", - "N442Y" - ], - "E2": [ - "R13K", - "R18K", - "A35E", - "K37R", - "V45I", - "L47I", - "S57P", - "N60G", - "L61V", - "G63S", - "D69N", - "M70L", - "H71Q", - "T73N", - "Q81E", - "A106E", - "I110L", - "S118T", - "E128K", - "N132I", - "A147T", - "E148D", - "Q149H", - "Q152R", - "N160K", - "S184G", - "S185A", - "H187Q", - "T189N", - "S195N", - "E201N", - "K206Q", - "I211V", - "N212S", - "A214V", - "Q216K", - "S218N", - "K222Q", - "D224N", - "Q225R", - "N233S", - "Y238F", - "A262S", - "M275V", - "I276V", - "T277S", - "K290N", - "Q299H", - "D301G", - "H305Q", - "A315V", - "R317K", - "T320S", - "V321I", - "L351M", - "V355I", - "I356V", - "H361Y", - "I368V", - "L369V", - "T379I", - "V382I", - "T386L", - "W387C", - "F389L", - "M408L", - "L410I", - "V414L", - "T420P", - "A421T" - ], - "E3": [ - "T5A", - "M6V", - "A28S", - "V36E", - "V38I", - "E45V", - "E48D", - "A49S", - "K57Q" - ], - "nsP1": [ - "E28G", - "H76N", - "E106D", - "E111G", - "K114Q", - "M116L", - "K117A", - "E118D", - "S124Q", - "D125E", - "D127S", - "T130R", - "T132S", - "V147I", - "M225L", - "N238T", - "V239I", - "L240I", - "K269T", - "Q270H", - "K299T", - "K396R", - "E403D", - "R424K", - "I440V", - "I441V", - "N444P", - "I455V", - "T466D", - "R469K", - "E474K", - "H475P", - "S479V", - "I482V", - "A484D", - "Q488G", - "D495A", - "V500I", - "A514T" - ], - "nsP2": [ - "A16S", - "D19E", - "V26I", - "S39A", - "P43A", - "V70I", - "H75T", - "Q80P", - "T108V", - "S126G", - "E127D", - "H128Y", - "T148S", - "L152M", - "V157I", - "D158E", - "R170K", - "Y177H", - "K223H", - "M224A", - "K225R", - "H244Y", - "I269V", - "R270K", - "R328K", - "P334Q", - "K338Q", - "D352E", - "T405N", - "D441E", - "T443S", - "I446L", - "R458K", - "L461M", - "K463E", - "D465N", - "T467A", - "D492S", - "T495A", - "E496D", - "D502E", - "Y503N", - "L532I", - "R543K", - "L558I", - "K560M", - "E561D", - "A578T", - "V582A", - "Y583L", - "T587S", - "T589A", - "N592A", - "V602M", - "H613N", - "T615S", - "H619P", - "A624T", - "E639D", - "P644T", - "R654S", - "A661T", - "G669A", - "K686R", - "I720V", - "I736V", - "S743A", - "V750I", - "K767R", - "A768T", - "T785S", - "R788N", - "L789F" - ], - "nsP3": [ - "T15E", - "E16D", - "K26R", - "A62K", - "V79I", - "I92V", - "I95L", - "L132M", - "M150T", - "S171A", - "V173L", - "A178V", - "T197I", - "S198T", - "M218V", - "I227N", - "V235I", - "S263N", - "H312C", - "K328R", - "A331P", - "E332R", - "T333P", - "P334L", - "E341K", - "P342L", - "E351V", - "T352E", - "P353R", - "E354A", - "Q355G", - "A357P", - "L358A", - "A359S", - "T360N", - "D362E", - "T364A", - "R365T", - "A366E", - "R367E", - "T368N", - "P369F", - "P371T", - "I373S", - "I374V", - "E375V", - "E376D", - "E377S", - "E378V", - "E379V", - "D380S", - "I382E", - "M384T", - "L385A", - "S386E", - "E387T", - "G388N", - "P389L", - "H391D", - "V393T", - "H394Q", - "Q395S", - "G402A", - "P403L", - "P404D", - "S405A", - "V406F", - "F407L", - "S408R", - "S410T", - "V421A", - "L424I", - "V426L", - "S441L", - "A442S", - "N445K", - "S446F", - "Y447S", - "F448S", - "A449T", - "K450S", - "L452S", - "E453D", - "F454A", - "L455G", - "A456I", - "V459I", - "V465I", - "N468Q", - "P469A", - "K473R", - "S484N", - "R485*", - "R489S", - "T490A", - "V493S", - "S494P", - "S514I", - "R515H", - "P517R", - "S518R", - "R519Q", - "A521G", - "V527A", - "F553Y", - "D554E" - ], - "nsP4": [ - "E31L", - "E33D", - "I34D", - "S35V", - "E43N", - "R68K", - "R78M", - "I80M", - "Q82R", - "A90T", - "E91D", - "G92N", - "H101Y", - "A108S", - "A113S", - "S116C", - "A126V", - "I141T", - "S155T", - "E238D", - "K241R", - "E242D", - "V253T", - "N275C", - "I341V", - "P362H", - "C365Q", - "P397Q", - "V440I", - "S513T", - "L549V", - "H550F", - "S553A", - "T554E", - "V559A", - "F562S", - "P563V", - "T575I", - "M583A", - "T586A", - "S590R", - "S591N", - "E593A", - "S594T", - "S596K", - "Y597H", - "A601N", - "T604H" - ], - "nuc": [ - "A127G", - "T143C", - "T185C", - "A188C", - "C192T", - "A200G", - "G209A", - "T236A", - "A239C", - "G245A", - "C248G", - "C251A", - "A255C", - "T266A", - "C270A", - "C287T", - "T290C", - "G293A", - "G305A", - "G323A", - "G329A", - "A335G", - "T338G", - "G341A", - "G344A", - "G359A", - "A362C", - "A368G", - "G374A", - "A376G", - "T378C", - "G380A", - "C383T", - "A384C", - "A390C", - "G392A", - "A393G", - "A394C", - "G395A", - "G398T", - "C401T", - "C407A", - "A414C", - "G415A", - "C416G", - "C419A", - "G423T", - "A424C", - "C426T", - "G428A", - "A431G", - "A432C", - "C433G", - "T434A", - "G437A", - "A438T", - "T440G", - "C446T", - "C449T", - "C452T", - "G464A", - "T467C", - "A482G", - "G483A", - "C485T", - "T491C", - "G497A", - "A503C", - "C506T", - "T512A", - "G521T", - "A524T", - "C536T", - "C545T", - "A551T", - "T554A", - "A557G", - "C566T", - "A572T", - "C584T", - "C587G", - "C605T", - "G608A", - "T611C", - "A614C", - "T620C", - "A623C", - "C629T", - "T632G", - "C653A", - "G662A", - "C671T", - "C683T", - "C686T", - "C692T", - "T695A", - "G701A", - "A707C", - "C708A", - "T710G", - "G716A", - "A717C", - "G719A", - "T740C", - "A749G", - "C752A", - "T755C", - "A757C", - "G759A", - "C762A", - "C767T", - "T770G", - "C782T", - "C788T", - "G794A", - "T804C", - "A810C", - "C822T", - "G827A", - "T830A", - "A833G", - "T836C", - "C839T", - "T845C", - "C848T", - "A850C", - "A854T", - "A863G", - "T878G", - "T884A", - "T887C", - "A908G", - "A914T", - "A940C", - "A947G", - "T956G", - "C968T", - "C986T", - "G995C", - "A998G", - "C1001T", - "C1022T", - "G1034A", - "C1037T", - "T1043C", - "A1049T", - "A1055C", - "A1067G", - "T1073A", - "C1076T", - "A1085G", - "T1091C", - "C1094A", - "T1097C", - "G1100A", - "C1103T", - "G1109T", - "A1112G", - "A1115G", - "T1124A", - "G1127A", - "C1130T", - "C1139G", - "A1142T", - "C1145A", - "T1154A", - "C1160T", - "C1172T", - "C1178T", - "T1190C", - "C1191T", - "T1194C", - "C1199A", - "C1208T", - "T1217C", - "A1231G", - "A1235G", - "T1238C", - "A1244G", - "T1247C", - "A1250G", - "A1253C", - "A1260C", - "A1262T", - "A1265G", - "C1272T", - "A1274G", - "A1283C", - "T1287C", - "A1292G", - "G1298A", - "C1301T", - "T1310C", - "G1315A", - "C1322T", - "A1328C", - "A1331T", - "T1340C", - "A1349G", - "C1361G", - "A1362G", - "C1364A", - "A1365G", - "C1367A", - "A1374C", - "A1375C", - "C1379T", - "C1388T", - "G1397T", - "C1403A", - "A1407G", - "C1412G", - "T1415C", - "C1418T", - "A1421T", - "G1427A", - "G1433C", - "G1436C", - "A1440G", - "C1441A", - "A1443C", - "C1448T", - "G1450A", - "A1463G", - "G1464A", - "G1466A", - "A1468C", - "C1469A", - "A1478T", - "T1479G", - "C1480T", - "T1484G", - "A1488G", - "T1493A", - "C1495A", - "A1505C", - "C1506G", - "A1507G", - "A1508C", - "C1526T", - "A1528C", - "T1535G", - "G1538A", - "G1541A", - "G1542A", - "G1547A", - "C1553A", - "G1556A", - "G1559A", - "C1565G", - "A1571C", - "A1574G", - "A1577G", - "T1580C", - "T1581C", - "G1584A", - "T1592C", - "G1598A", - "C1604G", - "T1607G", - "G1610C", - "C1616A", - "C1622T", - "T1626C", - "G1628C", - "G1640A", - "T1643A", - "C1652A", - "A1664G", - "T1667G", - "G1695A", - "C1696G", - "C1700T", - "C1706G", - "C1715T", - "A1724T", - "G1725A", - "G1727A", - "T1730C", - "T1733A", - "A1736G", - "T1742C", - "A1745G", - "C1746T", - "C1748A", - "G1751C", - "G1757A", - "A1763T", - "T1764G", - "T1766G", - "C1769T", - "C1775T", - "C1776G", - "A1790G", - "C1793G", - "C1802T", - "A1805C", - "C1808T", - "T1811C", - "A1817G", - "G1823T", - "C1824A", - "T1826G", - "C1832A", - "C1841G", - "C1844T", - "G1857A", - "G1859T", - "G1862A", - "G1871C", - "C1872A", - "A1873C", - "T1874C", - "A1877C", - "A1880T", - "C1883T", - "C1886G", - "A1888C", - "G1889T", - "C1892T", - "A1898G", - "C1919G", - "T1922A", - "C1928T", - "A1937G", - "C1956T", - "T1967C", - "C1970G", - "A1971G", - "C1972T", - "A1973C", - "T1976C", - "A1982G", - "G1988T", - "C1991T", - "A1994C", - "T1997C", - "T2006C", - "C2009T", - "A2012G", - "G2015A", - "C2018G", - "G2021A", - "C2024T", - "A2025G", - "A2030C", - "C2031T", - "C2039A", - "C2045T", - "G2048A", - "C2054T", - "C2057A", - "G2063A", - "C2075G", - "A2087G", - "C2090T", - "C2092G", - "T2093C", - "G2096T", - "C2103A", - "A2108G", - "C2111T", - "G2114A", - "G2117C", - "G2118A", - "G2120T", - "T2123A", - "T2126C", - "C2129A", - "C2132T", - "A2138G", - "G2150A", - "G2158A", - "A2159G", - "A2162T", - "C2163A", - "G2168T", - "T2177C", - "T2178C", - "A2189T", - "C2192T", - "A2195T", - "C2207A", - "G2210A", - "A2216T", - "A2219T", - "C2222T", - "G2225A", - "C2231A", - "T2237A", - "A2240G", - "C2252G", - "A2255G", - "C2262T", - "G2264A", - "G2267A", - "G2270T", - "C2276T", - "G2279A", - "C2288T", - "C2291T", - "A2294G", - "A2300T", - "A2303C", - "G2306A", - "G2315A", - "A2316C", - "A2318C", - "A2319G", - "T2320C", - "G2321T", - "A2323G", - "C2342G", - "A2345G", - "A2357C", - "G2360A", - "T2364C", - "T2369C", - "A2372T", - "C2375T", - "A2378G", - "C2379T", - "T2387C", - "G2390A", - "C2394T", - "G2396A", - "A2417G", - "T2420C", - "T2423C", - "C2429A", - "T2432C", - "C2435T", - "A2438G", - "G2441C", - "A2447T", - "C2450G", - "C2453T", - "A2454G", - "A2456C", - "G2458A", - "A2459G", - "T2462C", - "G2468A", - "A2471C", - "C2475T", - "A2477G", - "T2486C", - "A2489T", - "A2492G", - "G2495A", - "C2498T", - "C2501G", - "T2510C", - "A2525G", - "G2528A", - "T2531C", - "T2534C", - "C2537T", - "G2552A", - "G2555A", - "C2558G", - "C2564T", - "A2567G", - "C2573A", - "T2576G", - "G2582A", - "T2588C", - "A2591G", - "G2603T", - "A2630G", - "G2632A", - "A2639G", - "C2642A", - "C2650A", - "T2660G", - "A2661C", - "G2663A", - "T2666C", - "T2672C", - "C2675T", - "T2678C", - "T2681A", - "C2684G", - "T2687C", - "C2690G", - "A2693G", - "A2696T", - "C2705G", - "C2709T", - "C2711G", - "T2714C", - "T2723C", - "A2727C", - "G2744A", - "A2750G", - "A2753T", - "T2756C", - "A2774C", - "G2780A", - "A2783G", - "T2786A", - "C2789A", - "T2792G", - "G2801A", - "A2810G", - "T2825C", - "G2837C", - "T2846C", - "C2849G", - "C2855T", - "A2858C", - "C2863A", - "C2864T", - "A2867C", - "T2873C", - "C2882T", - "C2891T", - "C2894A", - "G2906A", - "G2912T", - "A2918G", - "T2921C", - "A2924G", - "A2927G", - "C2930T", - "A2936C", - "A2942T", - "A2945G", - "G2954C", - "T2966A", - "A2969T", - "T2972A", - "A2976T", - "T2978A", - "C2981G", - "A2985C", - "A3002T", - "G3005A", - "T3011C", - "C3017T", - "G3022A", - "T3030A", - "G3035A", - "A3036G", - "G3041T", - "G3042A", - "A3048G", - "T3065C", - "G3077T", - "T3080C", - "C3086T", - "G3089A", - "T3093C", - "A3095T", - "G3098C", - "A3104G", - "G3110A", - "T3113A", - "C3119A", - "A3122T", - "G3123T", - "A3124C", - "C3131G", - "A3132G", - "A3137C", - "C3146T", - "T3149C", - "G3152C", - "T3155A", - "T3156A", - "C3161T", - "G3167T", - "T3176G", - "A3182T", - "A3191T", - "A3194G", - "G3197A", - "C3200T", - "G3212A", - "T3221C", - "A3224G", - "C3236T", - "C3243A", - "T3248C", - "T3251A", - "A3254G", - "C3257T", - "T3263C", - "T3267C", - "A3269G", - "C3272T", - "T3275A", - "G3277A", - "T3296C", - "G3302A", - "A3305T", - "T3308G", - "C3311T", - "G3320A", - "C3321A", - "G3323C", - "A3328T", - "A3329G", - "A3332C", - "C3338G", - "C3339A", - "C3347T", - "C3350T", - "C3351A", - "C3353G", - "A3354C", - "G3356C", - "A3362G", - "A3365G", - "T3371A", - "A3377G", - "G3380A", - "G3381A", - "T3386A", - "A3389G", - "A3390C", - "T3394C", - "C3395G", - "T3396C", - "A3397T", - "T3398G", - "C3401T", - "A3408T", - "T3410G", - "C3413T", - "A3414G", - "A3416G", - "C3417T", - "A3423G", - "A3424C", - "T3425C", - "T3428C", - "G3434C", - "C3437G", - "T3443C", - "C3444T", - "A3449G", - "G3453A", - "A3461G", - "A3464G", - "C3465T", - "T3470C", - "T3477C", - "A3479T", - "C3486A", - "T3491C", - "A3492T", - "T3494A", - "A3503T", - "A3505C", - "T3509C", - "T3518G", - "G3519A", - "C3524T", - "C3527T", - "C3530T", - "G3536T", - "G3539A", - "C3542T", - "A3543C", - "A3545G", - "T3548C", - "C3551A", - "G3554A", - "G3563A", - "G3566C", - "G3569A", - "C3578G", - "C3579A", - "A3581C", - "C3584A", - "G3590C", - "T3593C", - "T3600C", - "C3609T", - "G3610C", - "G3611C", - "T3614C", - "G3617A", - "C3623T", - "C3626T", - "A3627C", - "A3629C", - "G3630A", - "T3632G", - "G3638A", - "T3641C", - "T3647G", - "C3650T", - "G3655C", - "T3656A", - "A3659G", - "G3662T", - "C3665T", - "A3668G", - "C3677T", - "A3680C", - "T3683C", - "T3686C", - "G3692A", - "G3695A", - "A3698G", - "A3701G", - "A3706G", - "T3713C", - "T3716C", - "C3734T", - "C3740T", - "T3749G", - "T3756C", - "C3761T", - "T3770A", - "C3774T", - "A3782C", - "C3788T", - "C3791G", - "A3794C", - "C3797A", - "A3807G", - "A3809G", - "T3812A", - "T3818A", - "C3821T", - "A3828C", - "G3830A", - "C3836T", - "C3845A", - "T3848A", - "A3855G", - "A3857T", - "G3860C", - "C3861A", - "G3863A", - "G3872A", - "T3876G", - "C3879A", - "G3881A", - "G3893T", - "G3897A", - "A3902C", - "C3903T", - "G3905A", - "A3914G", - "G3938A", - "C3941T", - "C3947T", - "A3949G", - "G3951A", - "C3953A", - "T3956C", - "T3965C", - "T3968G", - "C3971T", - "G3974A", - "T3977C", - "C3986G", - "T3987C", - "G3989A", - "C3992A", - "A4002T", - "A4004G", - "T4007C", - "G4012A", - "A4013C", - "C4014T", - "C4016T", - "C4019T", - "C4025G", - "A4028G", - "C4031T", - "A4034T", - "T4043C", - "G4049T", - "G4052C", - "T4070C", - "C4073A", - "A4074G", - "C4075A", - "G4076A", - "A4079T", - "A4082G", - "C4091T", - "T4094C", - "T4097A", - "C4103T", - "C4106T", - "A4108G", - "A4109G", - "A4112C", - "C4121A", - "G4127C", - "C4133T", - "A4136G", - "G4142A", - "T4145C", - "A4151G", - "C4154T", - "C4166T", - "T4169C", - "T4170C", - "A4178T", - "C4181A", - "A4190T", - "A4193G", - "A4199C", - "C4200T", - "C4205A", - "A4208G", - "A4214G", - "G4215A", - "C4216A", - "T4223C", - "T4229A", - "T4232C", - "A4235G", - "G4238C", - "G4241A", - "C4244T", - "C4250T", - "A4256G", - "G4266A", - "G4268A", - "T4274C", - "G4283A", - "G4286C", - "A4289C", - "G4301A", - "A4305G", - "T4310C", - "A4314C", - "T4316A", - "C4319G", - "T4325C", - "C4328T", - "A4335C", - "G4343C", - "G4346C", - "T4349C", - "G4355C", - "C4364A", - "G4379T", - "C4382T", - "T4388C", - "A4394T", - "A4400G", - "T4412C", - "T4413C", - "G4415C", - "G4418C", - "A4421T", - "T4424C", - "T4425A", - "C4430T", - "C4433G", - "T4436C", - "T4439C", - "A4442G", - "G4448C", - "C4451T", - "A4454C", - "C4460T", - "A4461C", - "A4463C", - "C4466T", - "G4469A", - "T4480C", - "G4481T", - "T4484G", - "A4496G", - "T4502C", - "A4503C", - "A4508G", - "A4511G", - "A4514G", - "G4517A", - "C4535G", - "T4542G", - "G4548C", - "A4553C", - "A4556G", - "G4559T", - "C4564T", - "A4565G", - "C4569T", - "G4571A", - "A4575C", - "G4580T", - "T4583C", - "T4595G", - "T4596C", - "G4598A", - "T4601C", - "A4604C", - "G4607A", - "C4613T", - "C4616T", - "C4621T", - "A4622C", - "G4624C", - "T4625G", - "G4634A", - "T4637C", - "C4640T", - "A4643T", - "T4646C", - "G4649A", - "G4655A", - "A4661G", - "T4664C", - "G4679A", - "A4683G", - "A4688C", - "T4694A", - "T4709G", - "T4711A", - "G4718A", - "G4721A", - "T4727C", - "G4734A", - "T4740C", - "G4742C", - "A4754G", - "C4766T", - "T4772A", - "G4775A", - "C4790A", - "G4799T", - "C4808A", - "G4819A", - "C4820T", - "G4826C", - "C4832T", - "G4835A", - "C4838T", - "T4853A", - "A4859G", - "A4862T", - "A4865T", - "C4871G", - "C4872T", - "A4874G", - "A4877G", - "C4880A", - "C4884A", - "T4886G", - "A4889G", - "A4895G", - "T4898C", - "A4901G", - "C4913G", - "T4916C", - "A4919G", - "C4937A", - "T4940C", - "T4943C", - "G4946A", - "C4961T", - "C4964T", - "C4965T", - "A4966G", - "C4974T", - "T4994A", - "T5003C", - "T5006C", - "C5010A", - "G5012A", - "A5014G", - "G5015A", - "C5021T", - "G5022C", - "G5024T", - "G5025C", - "A5026G", - "A5027C", - "A5028C", - "C5032T", - "A5033T", - "G5052A", - "G5054A", - "C5055T", - "C5056T", - "A5083T", - "A5085G", - "C5086A", - "C5089G", - "A5092C", - "C5094G", - "A5095G", - "A5099C", - "G5100C", - "A5102G", - "C5103G", - "T5104C", - "G5106T", - "A5108G", - "C5110A", - "T5117A", - "A5120T", - "A5121G", - "G5125C", - "C5128A", - "T5129A", - "A5130G", - "G5131A", - "A5132G", - "C5134A", - "A5135C", - "C5136T", - "C5137T", - "C5142A", - "A5148T", - "T5149C", - "A5151G", - "T5153A", - "A5155T", - "A5156T", - "G5159C", - "G5160A", - "A5161G", - "A5162C", - "A5164T", - "A5167T", - "A5168T", - "G5169A", - "A5170G", - "A5172T", - "G5173C", - "T5174G", - "A5175G", - "T5176A", - "A5177G", - "T5182C", - "G5183A", - "C5184G", - "T5185C", - "G5186C", - "T5187G", - "C5188A", - "G5190A", - "A5191C", - "G5193A", - "G5194A", - "C5195T", - "C5197T", - "C5202G", - "G5208A", - "T5209C", - "G5210A", - "C5213A", - "C5214T", - "A5215C", - "A5216G", - "G5219A", - "C5228T", - "G5236C", - "C5239T", - "C5241G", - "C5242A", - "T5244G", - "G5247T", - "A5249T", - "T5250C", - "C5255A", - "A5258C", - "T5259A", - "C5267T", - "T5270C", - "T5276C", - "A5279T", - "C5285T", - "T5288C", - "T5293C", - "T5300C", - "T5301A", - "A5303C", - "G5307T", - "A5348G", - "G5351T", - "C5353T", - "A5354G", - "G5355T", - "C5366G", - "C5368T", - "A5371C", - "T5374C", - "C5375G", - "G5376A", - "A5379T", - "A5380C", - "G5381T", - "C5384T", - "T5386C", - "G5387T", - "G5390T", - "T5391G", - "T5392C", - "T5393G", - "C5394G", - "T5395G", - "G5396C", - "G5397A", - "C5398T", - "G5399A", - "G5406A", - "G5408C", - "A5414T", - "C5418A", - "A5420G", - "C5423T", - "G5424A", - "T5426C", - "G5432A", - "A5433C", - "C5435G", - "C5436G", - "A5438G", - "G5447T", - "A5448C", - "A5449G", - "G5453T", - "G5482A", - "A5484T", - "G5485A", - "C5489G", - "C5492T", - "G5495T", - "A5498T", - "A5499G", - "T5501G", - "A5502T", - "G5503C", - "C5504A", - "A5507G", - "G5508T", - "T5509C", - "T5511C", - "T5571A", - "C5572T", - "A5573T", - "G5575A", - "C5581G", - "C5585G", - "A5586C", - "G5587A", - "G5588A", - "G5591A", - "C5593G", - "A5597C", - "T5603C", - "C5606T", - "T5611C", - "G5612A", - "T5615C", - "C5618T", - "C5627A", - "A5630T", - "T5633C", - "G5636A", - "T5657C", - "G5660A", - "T5689A", - "C5693A", - "A5702G", - "C5723A", - "T5726C", - "G5732A", - "A5738G", - "A5750C", - "A5754C", - "A5759G", - "A5762C", - "G5765T", - "T5766C", - "A5774G", - "G5777C", - "G5780A", - "G5786A", - "A5787C", - "G5789C", - "C5792G", - "G5793C", - "A5794T", - "G5801T", - "A5802G", - "T5803A", - "T5804C", - "T5805G", - "C5806T", - "T5810C", - "C5819T", - "C5825T", - "A5828T", - "G5829A", - "A5831C", - "A5834G", - "A5837G", - "A5840G", - "C5841T", - "A5846G", - "C5847A", - "C5849G", - "A5855G", - "T5856C", - "A5858C", - "G5864T", - "C5870T", - "A5873T", - "C5882T", - "A5885G", - "C5894T", - "C5900A", - "A5901C", - "G5905A", - "G5906A", - "G5909A", - "C5915T", - "A5921G", - "C5924G", - "A5930C", - "T5933C", - "G5935T", - "A5936G", - "T5942G", - "C5943T", - "A5947G", - "A5948C", - "C5951T", - "G5957T", - "T5963C", - "G5970A", - "T5972C", - "A5975C", - "G5976A", - "G5977A", - "A5978C", - "G5984A", - "T5993C", - "G6002A", - "C6003T", - "T6008C", - "T6011C", - "T6014G", - "T6015C", - "A6023C", - "G6024A", - "C6025G", - "T6026C", - "G6039T", - "A6048T", - "C6053T", - "G6056A", - "C6059G", - "A6062C", - "G6065A", - "C6079T", - "G6086T", - "A6092G", - "C6095T", - "T6104C", - "T6110C", - "C6116T", - "T6119C", - "A6122T", - "T6124C", - "T6125C", - "A6128C", - "G6131A", - "C6140A", - "G6146A", - "C6149T", - "T6165A", - "T6170C", - "T6174C", - "C6179T", - "T6182C", - "T6197C", - "A6200T", - "C6212T", - "A6218T", - "T6233C", - "T6234C", - "C6242G", - "C6249A", - "G6251A", - "G6254A", - "G6260T", - "A6263G", - "C6278T", - "G6281A", - "A6299C", - "C6305T", - "C6326T", - "G6329A", - "A6336C", - "A6338T", - "C6347A", - "A6350G", - "T6351C", - "T6356C", - "T6362G", - "C6380T", - "A6389G", - "G6395C", - "T6401C", - "T6404C", - "A6407G", - "A6416C", - "G6419A", - "A6424G", - "A6428T", - "C6431T", - "C6434T", - "A6449G", - "G6458A", - "G6459A", - "T6460C", - "T6464C", - "T6470C", - "T6473C", - "A6476G", - "T6477C", - "A6485G", - "A6491G", - "G6494A", - "T6497A", - "T6500A", - "A6509C", - "T6515C", - "T6518C", - "T6522C", - "G6524C", - "A6525T", - "A6526G", - "A6533G", - "G6536A", - "C6539T", - "C6545T", - "G6554A", - "T6557C", - "C6560G", - "A6569G", - "A6573C", - "G6575T", - "G6581C", - "T6590G", - "A6593G", - "A6596T", - "A6599T", - "A6626T", - "G6638A", - "T6641C", - "C6644T", - "G6650A", - "A6659T", - "T6665C", - "G6668A", - "C6677A", - "C6680T", - "A6683T", - "T6687C", - "A6696C", - "A6698G", - "T6699C", - "A6701G", - "C6710A", - "G6713A", - "T6716A", - "G6719T", - "A6723G", - "G6734T", - "C6740T", - "T6749A", - "T6758C", - "C6761T", - "T6764G", - "C6787A", - "T6788C", - "G6791A", - "C6794T", - "T6795C", - "G6796A", - "T6797A", - "G6803A", - "T6809G", - "T6815A", - "G6821C", - "G6836A", - "C6842T", - "T6851G", - "G6854A", - "G6857T", - "A6863T", - "T6869A", - "G6872T", - "T6884A", - "G6887C", - "C6892A", - "G6899A", - "G6905T", - "G6917T", - "T6920C", - "C6926T", - "A6929G", - "T6932A", - "A6935T", - "A6938T", - "T6945C", - "A6947C", - "C6953T", - "T6959G", - "T6965C", - "C6971T", - "A6974G", - "C6977G", - "A6986G", - "C6989A", - "A6992C", - "C6998T", - "C7001T", - "C7004T", - "G7007A", - "T7010C", - "G7013A", - "C7016T", - "G7020A", - "C7022T", - "C7025A", - "C7031A", - "C7034T", - "C7037T", - "A7040G", - "G7049A", - "A7052G", - "G7058A", - "C7059A", - "G7064T", - "C7067T", - "A7073T", - "A7076G", - "T7079C", - "A7085T", - "T7091C", - "T7097C", - "C7100T", - "C7106A", - "C7118A", - "G7124T", - "C7127T", - "A7130G", - "T7131C", - "C7142T", - "C7151T", - "A7154G", - "G7160A", - "C7172G", - "C7187A", - "G7190T", - "C7193A", - "C7196G", - "G7205A", - "C7208G", - "T7217C", - "A7220C", - "G7223T", - "T7226C", - "T7229C", - "T7235C", - "C7238T", - "T7239A", - "C7250A", - "A7253T", - "C7259T", - "T7262C", - "G7265C", - "A7268G", - "C7271T", - "G7286A", - "C7293T", - "T7295G", - "A7298G", - "C7305T", - "A7313C", - "T7319C", - "A7322G", - "T7331C", - "A7335C", - "G7337C", - "A7346G", - "T7347G", - "A7349G", - "C7350T", - "A7351T", - "C7352T", - "T7359G", - "A7362G", - "C7363A", - "A7364G", - "C7365A", - "C7367G", - "A7376G", - "T7378C", - "G7379T", - "A7382C", - "T7387C", - "T7388C", - "C7389G", - "C7390T", - "G7394A", - "G7397T", - "T7400C", - "A7415C", - "T7421C", - "A7424G", - "C7426T", - "A7430G", - "A7433C", - "C7439T", - "C7442T", - "T7448A", - "A7449G", - "T7450C", - "G7451A", - "C7454T", - "A7458G", - "T7460C", - "T7463C", - "C7464T", - "A7470C", - "C7472T", - "G7474A", - "T7475C", - "T7478A", - "A7480C", - "A7481G", - "T7482A", - "G7489A", - "C7490A", - "T7491C", - "A7497C", - "G7502A", - "G7503A", - "C7504A", - "T7508C", - "A7512C", - "C7513A", - "C7540T", - "C7543T", - "C7549A", - "T7550C", - "C7558A", - "A7560C", - "G7561C", - "G7570T", - "A7579C", - "T7585C", - "G7594A", - "A7597T", - "A7598G", - "T7599C", - "C7603G", - "T7606C", - "C7612T", - "T7617A", - "C7618T", - "G7619C", - "T7627C", - "A7630G", - "T7641A", - "C7642T", - "C7645G", - "A7646C", - "G7648C", - "T7657A", - "T7660C", - "C7661T", - "A7667T", - "G7672A", - "G7678A", - "A7684G", - "C7688A", - "C7690G", - "T7693C", - "T7699C", - "G7705A", - "G7708A", - "A7717G", - "C7726G", - "G7727A", - "C7728G", - "G7729T", - "T7735C", - "G7738A", - "G7741C", - "A7744C", - "C7747T", - "G7762A", - "A7763C", - "G7765T", - "G7768A", - "G7769C", - "C7773A", - "A7778G", - "A7779C", - "G7780A", - "A7782C", - "A7783G", - "A7785C", - "T7786C", - "G7788C", - "G7790A", - "G7791T", - "A7792T", - "C7793A", - "G7795A", - "G7800C", - "A7802C", - "G7813T", - "A7814G", - "A7815G", - "C7817A", - "A7835C", - "A7836C", - "C7839A", - "G7840A", - "G7843T", - "C7844G", - "G7846C", - "C7847G", - "C7848T", - "T7852A", - "G7855C", - "G7859A", - "A7861T", - "G7864A", - "A7865C", - "A7866C", - "T7867G", - "G7869C", - "A7872G", - "C7873T", - "G7882A", - "G7883C", - "C7885T", - "C7888T", - "A7897C", - "G7903A", - "A7906G", - "C7918T", - "T7925C", - "G7927C", - "G7939A", - "A7942T", - "T7948G", - "G7957A", - "T7981C", - "C7984T", - "G7996C", - "G7999A", - "A8002G", - "G8008A", - "G8020T", - "C8026A", - "C8032T", - "C8035T", - "C8041G", - "G8042A", - "T8043C", - "T8044G", - "C8045T", - "C8050A", - "C8054T", - "T8056G", - "T8072A", - "A8077G", - "T8080C", - "T8083C", - "C8084T", - "T8098C", - "G8101T", - "A8104C", - "G8107A", - "C8110T", - "G8116T", - "A8125G", - "C8128T", - "A8129C", - "A8130G", - "A8131T", - "G8143A", - "A8146G", - "C8155G", - "C8161T", - "G8163A", - "C8164T", - "T8173C", - "A8179C", - "C8182T", - "T8194C", - "G8197C", - "G8209C", - "T8221A", - "G8224C", - "C8227T", - "C8239T", - "C8248T", - "G8254A", - "T8257C", - "C8267A", - "G8272A", - "C8275A", - "T8278C", - "T8281A", - "G8287A", - "T8293A", - "G8296A", - "T8299C", - "A8305T", - "T8308A", - "A8309C", - "A8311C", - "A8314T", - "C8317A", - "C8326T", - "C8329A", - "A8337C", - "C8338T", - "G8341A", - "T8350C", - "T8353C", - "G8356C", - "T8362C", - "T8368C", - "G8371A", - "C8374T", - "C8377T", - "A8389T", - "G8395T", - "C8398T", - "A8399G", - "A8402G", - "G8404T", - "C8408T", - "C8413T", - "C8416A", - "C8422A", - "C8428T", - "A8431G", - "A8440G", - "A8443G", - "A8446T", - "T8449A", - "A8467G", - "G8468T", - "G8473A", - "T8477C", - "G8479T", - "C8488T", - "T8493A", - "T8494G", - "C8497T", - "G8498A", - "T8500A", - "G8509A", - "C8512T", - "T8518C", - "A8520T", - "C8522T", - "G8524A", - "A8530T", - "G8531T", - "A8533C", - "T8536G", - "C8545T", - "C8548G", - "A8554G", - "A8555C", - "A8557G", - "G8560A", - "A8561C", - "A8563T", - "T8566A", - "G8575A", - "G8578C", - "T8581C", - "G8584A", - "G8587A", - "A8596G", - "C8600A", - "G8601A", - "C8602A", - "G8605C", - "C8614T", - "G8616A", - "C8632T", - "T8635G", - "G8638C", - "T8647C", - "T8662A", - "G8665A", - "C8667A", - "A8673G", - "G8674A", - "C8677T", - "G8683A", - "C8686T", - "C8689T", - "T8695C", - "G8696A", - "T8698A", - "A8701C", - "C8702A", - "T8710C", - "C8713A", - "T8722C", - "C8725A", - "T8732C", - "C8734T", - "T8737A", - "A8741G", - "A8742G", - "C8743T", - "T8744G", - "G8750A", - "C8758G", - "A8762C", - "G8764C", - "T8767C", - "G8768A", - "C8770T", - "A8771C", - "C8776A", - "G8779A", - "C8781A", - "G8797T", - "A8800G", - "C8804G", - "A8806G", - "A8812C", - "C8815A", - "C8818T", - "A8821T", - "T8824C", - "T8833C", - "C8836T", - "T8845C", - "G8848C", - "T8851C", - "T8854C", - "T8860C", - "G8863C", - "C8864T", - "T8866A", - "G8872A", - "A8878T", - "C8880A", - "C8890A", - "A8891T", - "C8893G", - "A8902G", - "T8905C", - "T8915A", - "C8920A", - "A8923G", - "C8929A", - "A8935C", - "G8938A", - "T8944C", - "G8945A", - "G8950T", - "T8956C", - "A8958T", - "T8959A", - "C8968G", - "A8969C", - "A8971C", - "G8977T", - "C8980T", - "T8983G", - "T8986C", - "A8992C", - "A9001C", - "G9002A", - "G9007C", - "A9010C", - "G9013A", - "A9018G", - "C9025T", - "A9028T", - "A9037C", - "C9043G", - "A9049T", - "T9055C", - "G9073T", - "C9076A", - "C9088T", - "C9091T", - "T9095C", - "T9100C", - "C9112A", - "A9113G", - "T9115G", - "T9116G", - "A9118T", - "C9121G", - "C9124G", - "C9129A", - "A9130T", - "T9136A", - "T9139A", - "G9142A", - "A9145T", - "G9147A", - "C9152T", - "G9154A", - "A9160G", - "C9163T", - "G9164A", - "G9166C", - "A9178C", - "A9179C", - "G9181A", - "C9184T", - "A9194G", - "A9198G", - "C9199T", - "G9202C", - "C9204T", - "C9209A", - "G9216A", - "A9226G", - "A9227C", - "A9232C", - "G9233A", - "T9235C", - "C9236A", - "A9237G", - "C9241T", - "A9242C", - "G9244C", - "A9247C", - "A9261G", - "A9276T", - "T9283C", - "C9286T", - "C9295G", - "A9301T", - "G9304A", - "A9307G", - "C9313T", - "A9322T", - "T9341C", - "G9343C", - "G9346A", - "G9347T", - "C9355A", - "A9358G", - "T9370C", - "A9373G", - "A9376G", - "A9382G", - "T9385G", - "A9386G", - "G9388A", - "A9389G", - "A9391G", - "A9392T", - "C9394G", - "T9400A", - "C9404A", - "A9406G", - "A9409G", - "C9416T", - "G9418A", - "G9424C", - "C9427T", - "G9433T", - "T9436C", - "C9439A", - "C9442T", - "T9445C", - "C9451G", - "T9454C", - "C9455A", - "C9457A", - "A9460T", - "C9461T", - "G9463A", - "A9465G", - "T9466C", - "T9469C", - "T9478G", - "C9481T", - "C9487T", - "G9490A", - "C9493T", - "A9496C", - "T9499G", - "A9502G", - "C9507T", - "T9511A", - "G9513A", - "T9517C", - "T9520C", - "A9521T", - "G9524A", - "A9529G", - "A9535G", - "G9538T", - "G9544A", - "T9547C", - "A9556T", - "T9577C", - "A9583T", - "A9589G", - "A9595G", - "C9598T", - "T9604C", - "A9607T", - "T9610C", - "G9613T", - "C9614A", - "C9622T", - "G9625A", - "G9626A", - "G9628A", - "A9629G", - "C9631T", - "T9634C", - "T9637C", - "C9644T", - "A9649G", - "C9652T", - "T9655A", - "C9661A", - "A9665G", - "C9667G", - "C9668G", - "T9673A", - "G9676A", - "A9679T", - "T9682A", - "C9685T", - "G9697C", - "C9699T", - "C9700A", - "T9703A", - "G9707A", - "T9709A", - "A9712G", - "C9718A", - "A9719C", - "C9720T", - "G9724C", - "C9725T", - "T9730A", - "C9739T", - "T9745C", - "C9752T", - "T9757A", - "C9764A", - "G9766A", - "C9767T", - "C9781A", - "G9784C", - "A9785C", - "G9787T", - "T9790C", - "C9791A", - "G9793C", - "C9796T", - "G9803T", - "C9820T", - "A9821C", - "G9824A", - "C9826G", - "G9829A", - "C9832T", - "C9838G", - "C9841G", - "T9848A", - "C9850T", - "G9853T", - "T9856C", - "C9868T", - "C9874T", - "A9890C", - "T9892C", - "T9896C", - "G9901T", - "C9904A", - "T9907C", - "G9910T", - "C9913A", - "C9916T", - "G9919A", - "T9922A", - "A9925G", - "G9926A", - "G9928T", - "C9932A", - "C9934A", - "C9935A", - "G9937C", - "G9940A", - "G9943A", - "G9949C", - "T9955C", - "G9956T", - "C9958T", - "G9974C", - "G9976A", - "A9988C", - "C10000T", - "G10012A", - "C10015A", - "C10032T", - "A10044T", - "A10054C", - "C10057G", - "C10060T", - "A10063G", - "A10066C", - "C10069G", - "A10078C", - "C10082G", - "T10084A", - "A10093C", - "A10096C", - "A10099T", - "C10102T", - "A10109C", - "G10111A", - "C10112A", - "G10114T", - "A10123C", - "G10124C", - "G10132A", - "C10138T", - "C10141T", - "C10147T", - "C10150T", - "C10153T", - "A10159C", - "A10162G", - "A10163T", - "G10165A", - "A10171T", - "C10177G", - "A10178G", - "C10180G", - "A10183G", - "T10204C", - "C10208G", - "C10209A", - "A10211G", - "C10212T", - "T10213C", - "T10214A", - "A10215C", - "A10217C", - "G10219C", - "T10222C", - "C10229A", - "C10234T", - "C10240A", - "C10243T", - "A10249T", - "C10255T", - "G10258A", - "A10270C", - "T10273C", - "A10276C", - "C10282T", - "T10285C", - "A10301T", - "C10312T", - "G10315A", - "G10318A", - "A10330G", - "C10336T", - "C10343G", - "T10344C", - "G10348T", - "T10351C", - "C10354T", - "A10363G", - "C10366T", - "G10372A", - "C10381T", - "T10382G", - "T10386C", - "C10387A", - "C10396T", - "C10405T", - "A10408G", - "G10411C", - "G10413C", - "A10417T", - "C10420A", - "T10426C", - "A10432G", - "G10444T", - "T10456A", - "T10459C", - "C10468T", - "T10471C", - "A10474C", - "G10475A", - "A10479G", - "T10492C", - "A10495T", - "C10496T", - "T10498A", - "C10501A", - "T10507G", - "A10513G", - "C10516T", - "T10519C", - "A10528G", - "C10531A", - "G10534T", - "T10540C", - "C10543T", - "G10545A", - "G10546A", - "G10549A", - "A10550G", - "C10552G", - "T10555C", - "T10558C", - "T10567C", - "G10573A", - "T10576C", - "G10579A", - "A10585T", - "C10586A", - "A10587C", - "T10588C", - "G10597T", - "T10600C", - "A10603C", - "C10615T", - "T10623C", - "C10624T", - "T10625A", - "T10631A", - "T10636C", - "G10639A", - "T10648C", - "C10654T", - "A10657G", - "G10660A", - "C10661T", - "C10672G", - "G10676T", - "A10678C", - "G10682A", - "A10685G", - "C10687T", - "T10690C", - "C10693T", - "A10696G", - "C10699T", - "T10702C", - "A10708C", - "A10711T", - "G10714A", - "A10726G", - "G10732A", - "A10735G", - "T10751C", - "T10758A", - "T10768A", - "C10771T", - "C10777T", - "T10783C", - "T10784A", - "T10786A", - "A10787G", - "C10788T", - "A10789G", - "T10797A", - "G10800A", - "C10801A", - "G10802A", - "C10804A", - "G10805C", - "C10863A", - "A10865T", - "G10866T", - "G10867T", - "C10872T", - "A10873T", - "A10885G", - "A10891G", - "G10892A", - "C10893A", - "T10894C", - "C10897G", - "T10906C", - "G10909A", - "C10912T", - "G10915A", - "G10921A", - "A10927T", - "C10930G", - "C10933T", - "T10936C", - "C10939G", - "G10942A", - "C10945T", - "C10948T", - "A10949T", - "C10954G", - "G10963A", - "G10968C", - "C10969T", - "G10972A", - "T10973G", - "C10978G", - "C10984T", - "C10990A", - "T10993C", - "G10994A", - "G10996A", - "A10999T", - "C11005T", - "T11011G", - "C11015G", - "G11017T", - "A11019G", - "A11026C", - "G11027A", - "C11032G", - "G11035T", - "G11038T", - "C11040T", - "G11044A", - "A11047G", - "G11050A", - "G11053C", - "G11054C", - "C11055T", - "G11056C", - "C11059A", - "A11060G", - "T11065C", - "G11071A", - "C11074A", - "A11077G", - "G11089A", - "G11092A", - "C11095T", - "C11101G", - "A11104G", - "A11107C", - "A11113C", - "T11114A", - "C11122G", - "G11125A", - "T11134C", - "C11143T", - "C11146G", - "G11149C", - "C11155T", - "C11158T", - "G11164C", - "A11167G", - "C11173A", - "A11191G", - "C11200A", - "G11203A", - "A11209C", - "C11215A", - "G11218A", - "T11228A", - "A11230C", - "C11236G", - "C11237T", - "G11239A", - "G11242C", - "G11248T", - "A11251G", - "C11254A", - "A11257G", - "A11258C", - "T11260C", - "A11261G", - "T11263A", - "A11264G", - "C11272A", - "G11276A", - "G11278A", - "T11284A", - "C11286T", - "T11290C", - "G11293A", - "T11298C", - "C11302T", - "G11305A", - "A11312G", - "A11313G", - "A11319G", - "A11320G", - "C11321A", - "A11322G", - "T11323G", - "A11324T", - "T11326C", - "T11333A", - "A11334C", - "G11335A", - "A11348G", - "C11353T", - "T11354A", - "T11355A", - "A11358T", - "T11359G", - "A11362T", - "C11364A", - "C11366A", - "G11369A", - "A11379G", - "C11383T", - "A11389T", - "T11403A", - "T11405A", - "T11406A", - "T11408A", - "A11420T", - "G11424A" - ] - } - }, - "name": "MK088531.1", - "node_attrs": { - "author": { - "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", - "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." - }, - "country": { - "confidence": { - "Colombia": 0.07727737785037744, - "Costa_Rica": 0.0740320725986566, - "Honduras": 0.0764396069950167, - "Mexico": 0.078741870328267 - }, - "entropy": 2.6375762209719746, - "value": "Mexico" - }, - "div": 0.20428167411809814, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2018.7712328767122, - 2018.7712328767122 - ], - "value": 2018.7712328767122 - }, - "region": { - "confidence": { - "?": 0.04844058669338583, - "AUSNZ": 0.1090142826896993, - "LA,C": 0.8425451306169149 - }, - "entropy": 0.5326072614144383, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2018": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2018" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: N13H, I20S, V39M, V48L, G53S, A54V; CP: Y15F, F19Y, A21P, A56T, K67R, R68K, A70P, P71Q, K73Q, E74A, N75T, R76Q, G77A, N79G, G80K, K83N, K84G, N85K, G87A, K92S, P95A, H97P, E100N, G103S, N104T, A108V, V161T, A164S, S201N; E1: S9N, I18V, P28A, I31V, I36V, K37R, V42L, M55L, A59S, S69P, P70K, T71V, T98S, K105R, M109T, L115S, A116T, Q120L, H140Q, T144A, I145V, V154I, N155S, T162V, I177V, I203L, I208T, S209T, S211N, V220I, K225N, A228T, K247R, F253Y, Y262H, T263I, I266V, A298G, T302S, V332I, A342S, A343F, E345D, L346V, A347V, A352L, I354L, R366K, S372T, Y373L, V374L, Y393H; E2: R18K, I20V, T73K, A106E, N132T, T140S, A147T, Q149H, Q152R, N160K, R161K, G162D, S185A, H187Q, T194Q, E201N, T205S, K206A, Q216T, F217Y, D224A, F259Y, A262S, M275I, K290R, Q299H, H305N, A315T, V316T, K324Q, F328Y, F338Y, I377V, I380T, F389L, V394A, M408L, L410V; E3: Q18T, M33I, V36A, K57Q; nsP1: Y94F, E106D, K117A, S124E, T130Q, E131D, S140T, Q146H, M225L, L240I, R256K, R424K, I440V, N444P, I455L, R469K, E474D, H475K, S479P, A484P, I487V, Q488S, E489A, N492E, D495A, V500I, A508V, L513I, A514V, A515P; nsP2: A16S, Q47E, V48A, Q80A, T108V, T122V, H128Y, D129E, K139R, L146Q, T148S, D158E, R170K, K203R, I218M, K225R, V229I, N230V, E247D, R270K, Q302R, R328K, V389I, T405N, I446L, A451Q, T467A, K487R, T495A, D502A, Y503H, K505R, T506D, Y583L, N592S, R596S, H614R, H619R, V626A, T642N, V643I, P644T, R654S, R660K, A661S, G669S, T704A, I733V, A768V; nsP3: T13N, T15E, I20V, S44N, A55S, V79L, E87D, I92V, V96I, N100H, M150T, V156I, S171A, T174A, Y195F, S198T, M218V, I227T, V235I, A272S, Q279H, S311A, S317L, K328R, A331P, E332K, A344P, N346S, Q347R, S348E, E354A, Q355E, A357V, V361E, R367A, I372V, I373T, I374L, E378A, S381T, M384I, L385V, G388S, P389T, T390W, H391L, Q392R, V393*, Q395L, D399E, G402S, P403S, P404H, S405A, S410N, H415Q, L424V, L427Q, D428G, L430I, T436F, K438S, A440M, S441Q, A442E, K450N, L452S, E453G, A456I, R457K, V459I, R467T, N468Q, S480P, H481Q, P483E, S484G, R485*, R489T, S491P, P517S, R519G, A521T, N534K, F553Y; nsP4: L47A, I75V, Q82S, A90T, H101Y, K118R, I141T, L148M, K174R, S176A, V253T, N275S, R284S, I341V, P397Q, V437M, S513T, H550Y, P563S, V576T, I580V, M583T, S590R, S591N, E593A, S594A, S596K, Y597H, A601N, I603V" - }, - "mutations": { - "6k": [ - "N13H", - "I20S", - "V39M", - "V48L", - "G53S", - "A54V" - ], - "CP": [ - "Y15F", - "F19Y", - "A21P", - "A56T", - "K67R", - "R68K", - "A70P", - "P71Q", - "K73Q", - "E74A", - "N75T", - "R76Q", - "G77A", - "N79G", - "G80K", - "K83N", - "K84G", - "N85K", - "G87A", - "K92S", - "P95A", - "H97P", - "E100N", - "G103S", - "N104T", - "A108V", - "V161T", - "A164S", - "S201N" - ], - "E1": [ - "S9N", - "I18V", - "P28A", - "I31V", - "I36V", - "K37R", - "V42L", - "M55L", - "A59S", - "S69P", - "P70K", - "T71V", - "T98S", - "K105R", - "M109T", - "L115S", - "A116T", - "Q120L", - "H140Q", - "T144A", - "I145V", - "V154I", - "N155S", - "T162V", - "I177V", - "I203L", - "I208T", - "S209T", - "S211N", - "V220I", - "K225N", - "A228T", - "K247R", - "F253Y", - "Y262H", - "T263I", - "I266V", - "A298G", - "T302S", - "V332I", - "A342S", - "A343F", - "E345D", - "L346V", - "A347V", - "A352L", - "I354L", - "R366K", - "S372T", - "Y373L", - "V374L", - "Y393H" - ], - "E2": [ - "R18K", - "I20V", - "T73K", - "A106E", - "N132T", - "T140S", - "A147T", - "Q149H", - "Q152R", - "N160K", - "R161K", - "G162D", - "S185A", - "H187Q", - "T194Q", - "E201N", - "T205S", - "K206A", - "Q216T", - "F217Y", - "D224A", - "F259Y", - "A262S", - "M275I", - "K290R", - "Q299H", - "H305N", - "A315T", - "V316T", - "K324Q", - "F328Y", - "F338Y", - "I377V", - "I380T", - "F389L", - "V394A", - "M408L", - "L410V" - ], - "E3": [ - "Q18T", - "M33I", - "V36A", - "K57Q" - ], - "nsP1": [ - "Y94F", - "E106D", - "K117A", - "S124E", - "T130Q", - "E131D", - "S140T", - "Q146H", - "M225L", - "L240I", - "R256K", - "R424K", - "I440V", - "N444P", - "I455L", - "R469K", - "E474D", - "H475K", - "S479P", - "A484P", - "I487V", - "Q488S", - "E489A", - "N492E", - "D495A", - "V500I", - "A508V", - "L513I", - "A514V", - "A515P" - ], - "nsP2": [ - "A16S", - "Q47E", - "V48A", - "Q80A", - "T108V", - "T122V", - "H128Y", - "D129E", - "K139R", - "L146Q", - "T148S", - "D158E", - "R170K", - "K203R", - "I218M", - "K225R", - "V229I", - "N230V", - "E247D", - "R270K", - "Q302R", - "R328K", - "V389I", - "T405N", - "I446L", - "A451Q", - "T467A", - "K487R", - "T495A", - "D502A", - "Y503H", - "K505R", - "T506D", - "Y583L", - "N592S", - "R596S", - "H614R", - "H619R", - "V626A", - "T642N", - "V643I", - "P644T", - "R654S", - "R660K", - "A661S", - "G669S", - "T704A", - "I733V", - "A768V" - ], - "nsP3": [ - "T13N", - "T15E", - "I20V", - "S44N", - "A55S", - "V79L", - "E87D", - "I92V", - "V96I", - "N100H", - "M150T", - "V156I", - "S171A", - "T174A", - "Y195F", - "S198T", - "M218V", - "I227T", - "V235I", - "A272S", - "Q279H", - "S311A", - "S317L", - "K328R", - "A331P", - "E332K", - "A344P", - "N346S", - "Q347R", - "S348E", - "E354A", - "Q355E", - "A357V", - "V361E", - "R367A", - "I372V", - "I373T", - "I374L", - "E378A", - "S381T", - "M384I", - "L385V", - "G388S", - "P389T", - "T390W", - "H391L", - "Q392R", - "V393*", - "Q395L", - "D399E", - "G402S", - "P403S", - "P404H", - "S405A", - "S410N", - "H415Q", - "L424V", - "L427Q", - "D428G", - "L430I", - "T436F", - "K438S", - "A440M", - "S441Q", - "A442E", - "K450N", - "L452S", - "E453G", - "A456I", - "R457K", - "V459I", - "R467T", - "N468Q", - "S480P", - "H481Q", - "P483E", - "S484G", - "R485*", - "R489T", - "S491P", - "P517S", - "R519G", - "A521T", - "N534K", - "F553Y" - ], - "nsP4": [ - "L47A", - "I75V", - "Q82S", - "A90T", - "H101Y", - "K118R", - "I141T", - "L148M", - "K174R", - "S176A", - "V253T", - "N275S", - "R284S", - "I341V", - "P397Q", - "V437M", - "S513T", - "H550Y", - "P563S", - "V576T", - "I580V", - "M583T", - "S590R", - "S591N", - "E593A", - "S594A", - "S596K", - "Y597H", - "A601N", - "I603V" - ], - "nuc": [ - "A27G", - "C28A", - "A30T", - "T32A", - "A43T", - "A44T", - "C65T", - "G113C", - "T143A", - "T146C", - "T161C", - "C164T", - "G182A", - "A188T", - "C228T", - "C251T", - "T263C", - "G269A", - "T272C", - "T278C", - "T281C", - "C284T", - "T302C", - "G323A", - "A325T", - "G329A", - "T338C", - "A350G", - "A362C", - "A377G", - "G386A", - "A393G", - "A394C", - "G395A", - "A414G", - "G415A", - "C416G", - "T422C", - "C425T", - "A432C", - "C433A", - "T434G", - "G437C", - "C447T", - "C449G", - "G461A", - "T462A", - "A482C", - "C485G", - "T491C", - "T500C", - "A503C", - "T512G", - "G521C", - "A524C", - "T527C", - "T533C", - "C536T", - "C542A", - "C545T", - "A551T", - "C587G", - "T606C", - "T611C", - "A617G", - "T620C", - "T632C", - "C635A", - "C647T", - "C653G", - "T657C", - "G662A", - "T665C", - "C677T", - "C686T", - "C689A", - "C702A", - "A707C", - "T710C", - "G716A", - "A717C", - "T728A", - "C752G", - "C762A", - "C767T", - "T770C", - "C776T", - "T779C", - "C785T", - "G794A", - "G800A", - "G809A", - "G811A", - "G812A", - "C822T", - "G827A", - "A833G", - "T840C", - "T878G", - "T884G", - "A909C", - "A911G", - "A914C", - "A947G", - "G962T", - "A992G", - "G995A", - "T1007C", - "T1052G", - "G1058A", - "T1073C", - "C1080T", - "A1085T", - "G1109A", - "T1116C", - "A1142T", - "C1151T", - "C1160A", - "A1163G", - "A1166G", - "C1172T", - "T1175C", - "C1178T", - "T1190C", - "T1194C", - "C1199A", - "A1235G", - "A1271G", - "C1272T", - "A1274G", - "T1287C", - "G1298C", - "C1304T", - "T1310A", - "G1315A", - "G1319A", - "A1328T", - "T1340C", - "A1349T", - "A1358G", - "A1362G", - "G1373T", - "A1374C", - "A1375C", - "T1382C", - "T1391C", - "C1394T", - "G1397A", - "A1407C", - "C1412T", - "C1418T", - "A1439G", - "A1445G", - "C1448A", - "G1450A", - "A1454G", - "G1466T", - "C1467A", - "C1469A", - "G1472A", - "T1479C", - "G1494C", - "C1496T", - "C1502T", - "A1503G", - "A1505C", - "C1506T", - "A1507C", - "A1510C", - "T1514G", - "G1517A", - "A1518G", - "C1520A", - "C1526A", - "A1528C", - "T1529A", - "G1532A", - "G1542A", - "G1559A", - "C1567T", - "A1568C", - "A1574G", - "A1577C", - "T1581A", - "G1583C", - "C1585T", - "G1587C", - "T1592C", - "T1595G", - "C1604T", - "T1619C", - "T1626C", - "T1632C", - "T1643A", - "G1646C", - "A1664T", - "T1667C", - "G1670A", - "T1674C", - "G1676A", - "C1688T", - "T1694C", - "G1695T", - "C1700T", - "G1703A", - "A1724T", - "T1730G", - "T1733G", - "A1736T", - "T1742C", - "A1745C", - "T1754C", - "A1763T", - "T1766C", - "T1772A", - "C1781A", - "T1784G", - "C1788G", - "T1792C", - "A1805T", - "C1808T", - "T1811A", - "C1814T", - "A1817G", - "G1823A", - "T1826C", - "C1841T", - "A1850C", - "A1856G", - "A1877G", - "A1880C", - "C1887G", - "A1888C", - "T1895C", - "C1916T", - "T1922C", - "A1937G", - "T1964C", - "A1971G", - "C1972T", - "A1973T", - "T1976C", - "G1985C", - "A1994C", - "T2006C", - "A2013G", - "C2014T", - "G2021A", - "C2024T", - "C2031T", - "C2036A", - "C2039A", - "T2051C", - "C2057T", - "A2065G", - "A2066G", - "A2081G", - "T2086A", - "C2090G", - "A2091T", - "G2096T", - "G2102C", - "C2115T", - "G2117A", - "G2120A", - "T2123A", - "C2129G", - "C2132T", - "T2135C", - "C2147T", - "C2154T", - "G2158A", - "A2162C", - "C2163A", - "T2177C", - "A2183G", - "A2186G", - "A2189G", - "G2198T", - "T2204C", - "T2228A", - "T2237A", - "A2246T", - "A2257G", - "G2270C", - "C2276A", - "A2282G", - "A2294T", - "A2297G", - "A2300C", - "A2303G", - "A2304C", - "G2306C", - "C2312G", - "A2322C", - "A2323G", - "G2327C", - "G2334A", - "C2336A", - "A2337G", - "A2338T", - "T2339G", - "C2342A", - "A2345C", - "T2348C", - "G2351T", - "C2354T", - "T2364C", - "G2366A", - "C2375T", - "A2378G", - "G2390C", - "C2393A", - "C2405T", - "C2435T", - "A2447C", - "C2450A", - "A2456T", - "G2458A", - "G2483A", - "T2486C", - "A2489G", - "A2492G", - "G2522T", - "A2554G", - "C2558G", - "G2597C", - "T2600A", - "G2603C", - "C2615G", - "C2624T", - "A2630G", - "G2632A", - "A2637C", - "C2648T", - "G2651T", - "T2678C", - "C2690A", - "A2693G", - "A2696T", - "G2699A", - "G2702A", - "C2705T", - "T2708C", - "C2711T", - "T2714A", - "C2717G", - "T2723C", - "A2729G", - "G2732A", - "C2765T", - "A2774C", - "T2786A", - "T2792C", - "A2795G", - "C2799T", - "G2807A", - "A2810G", - "C2813G", - "G2814A", - "T2825C", - "G2837C", - "C2850T", - "C2855T", - "A2858C", - "C2863A", - "T2873C", - "G2876C", - "G2888C", - "C2891T", - "C2904A", - "C2922T", - "A2924G", - "C2930A", - "A2942T", - "G2951C", - "T2963C", - "T2966C", - "C2975T", - "C2981T", - "G2984C", - "A2985C", - "A2987C", - "G3000C", - "C3001A", - "C3014T", - "C3017T", - "C3029T", - "G3041C", - "C3044T", - "A3048G", - "C3050G", - "C3053T", - "G3071T", - "T3080C", - "C3086T", - "T3092C", - "A3109G", - "A3122T", - "C3131G", - "A3132G", - "A3134G", - "A3140G", - "T3149G", - "G3152T", - "A3154C", - "T3155C", - "T3156C", - "C3161T", - "A3163G", - "A3164G", - "A3165G", - "C3166A", - "G3167T", - "A3182G", - "G3188A", - "T3195C", - "G3197T", - "C3209T", - "G3212C", - "G3233A", - "T3242G", - "A3245G", - "A3260T", - "T3263A", - "A3269G", - "C3272G", - "T3275A", - "T3281C", - "T3284C", - "C3299A", - "G3302T", - "T3308G", - "C3311T", - "A3332G", - "C3347T", - "C3353A", - "A3354C", - "G3356T", - "G3368T", - "C3383G", - "T3396C", - "A3397T", - "T3398G", - "T3410C", - "C3413G", - "A3416T", - "C3422T", - "A3424G", - "T3428C", - "T3431C", - "C3435A", - "A3440C", - "T3443C", - "A3446C", - "A3449G", - "T3452G", - "G3455T", - "A3459C", - "A3461C", - "A3479G", - "C3485A", - "A3490G", - "T3494A", - "A3505G", - "T3509C", - "T3518A", - "A3521G", - "T3526C", - "C3527T", - "C3530T", - "A3545G", - "T3548C", - "C3551T", - "G3557C", - "C3560T", - "G3563A", - "G3569A", - "C3574A", - "G3576A", - "C3579A", - "C3584G", - "G3590T", - "A3608G", - "C3609A", - "G3611C", - "G3617A", - "T3620C", - "G3628A", - "G3630T", - "T3642C", - "A3653G", - "G3654A", - "T3656C", - "A3659G", - "C3671T", - "C3677T", - "A3680G", - "T3686G", - "G3692T", - "A3701T", - "A3707G", - "A3731G", - "C3737T", - "C3740G", - "T3743A", - "T3749C", - "T3756C", - "A3759G", - "C3761A", - "T3770G", - "G3776A", - "C3788T", - "C3791T", - "C3800T", - "T3812C", - "C3836T", - "C3842T", - "C3845T", - "A3846G", - "T3848G", - "T3851A", - "A3854G", - "G3860A", - "G3863A", - "C3869T", - "C3878T", - "C3887T", - "A3890G", - "G3893T", - "G3923A", - "A3929C", - "T3935A", - "C3941T", - "T3944C", - "C3947G", - "C3952T", - "C3953T", - "T3956C", - "G3974A", - "C3975T", - "T3977G", - "G3989A", - "C3995T", - "T4001C", - "T4007C", - "C4010A", - "A4011C", - "C4014T", - "C4016G", - "C4025A", - "A4034T", - "C4037T", - "A4040C", - "T4043C", - "A4055G", - "G4058C", - "C4067T", - "C4069A", - "C4073A", - "A4074G", - "C4075A", - "A4082G", - "G4085C", - "A4089G", - "T4097G", - "A4112G", - "A4124T", - "G4130C", - "C4133T", - "T4139C", - "G4142T", - "T4145C", - "G4148A", - "G4162A", - "C4166T", - "T4170C", - "A4172G", - "A4184G", - "G4187C", - "G4194T", - "G4196C", - "C4205T", - "T4211G", - "A4214G", - "A4220G", - "T4223C", - "G4241A", - "G4266C", - "T4274G", - "C4277T", - "G4292C", - "C4304G", - "A4305G", - "T4316C", - "G4317A", - "T4325C", - "C4328T", - "A4329C", - "A4340T", - "T4349C", - "C4361T", - "C4364A", - "G4379T", - "T4388C", - "A4394C", - "A4400G", - "T4404C", - "C4409T", - "T4412C", - "T4436A", - "T4439C", - "C4451T", - "A4478G", - "T4480C", - "C4487G", - "A4496T", - "G4497A", - "G4499A", - "A4511G", - "A4514C", - "G4517C", - "G4520A", - "A4532C", - "T4542G", - "T4544G", - "A4551G", - "G4559A", - "T4574C", - "G4577A", - "T4595C", - "T4596C", - "T4601A", - "A4605C", - "G4607C", - "C4613T", - "A4615T", - "A4622G", - "G4624C", - "T4625C", - "T4628C", - "G4634A", - "T4637C", - "A4643G", - "C4658A", - "A4661G", - "G4676A", - "T4682C", - "A4683G", - "A4688C", - "C4700A", - "T4709G", - "T4711C", - "A4715T", - "G4718C", - "G4721A", - "T4727C", - "A4733G", - "G4734A", - "C4748T", - "C4749T", - "A4781G", - "C4787T", - "C4790T", - "A4793G", - "G4796A", - "G4799T", - "A4805G", - "C4824T", - "T4829G", - "G4845T", - "T4853A", - "A4856T", - "G4868C", - "C4869A", - "C4871G", - "A4874T", - "A4877G", - "C4913G", - "A4919T", - "T4920C", - "G4925C", - "A4934G", - "T4940A", - "C4955T", - "T4962G", - "C4964T", - "T4970C", - "G4976C", - "T4980C", - "C4981T", - "T4982C", - "C5000T", - "T5003C", - "G5012C", - "A5014G", - "G5022C", - "G5025A", - "G5061C", - "A5063G", - "A5068G", - "C5070A", - "A5071G", - "T5073G", - "C5074A", - "C5075G", - "A5087G", - "A5092C", - "A5093G", - "C5094G", - "C5101T", - "T5113A", - "A5130G", - "G5131C", - "A5132T", - "T5138C", - "G5144T", - "A5145G", - "T5149C", - "A5151C", - "A5164C", - "G5173C", - "T5180C", - "G5183A", - "C5184G", - "A5189G", - "G5193A", - "C5196A", - "A5199T", - "C5200G", - "A5203T", - "C5204T", - "A5206G", - "G5208T", - "T5209A", - "A5215T", - "C5228A", - "G5235T", - "G5236C", - "C5238T", - "C5242A", - "T5244G", - "A5249T", - "A5258T", - "T5259A", - "C5260A", - "T5270C", - "T5276A", - "C5282T", - "T5291C", - "G5294C", - "T5301G", - "C5306G", - "T5311A", - "T5312G", - "A5314G", - "C5318A", - "C5319A", - "G5321A", - "A5337T", - "C5338T", - "C5339T", - "A5344G", - "G5345T", - "G5349A", - "C5350T", - "T5352C", - "C5353A", - "A5354G", - "C5356A", - "G5381T", - "T5386C", - "A5389G", - "G5390A", - "G5397A", - "C5398T", - "G5399A", - "G5401A", - "T5405C", - "G5406A", - "G5408A", - "A5420C", - "C5429T", - "G5431C", - "G5432C", - "A5433C", - "C5435A", - "T5469C", - "T5474G", - "A5477C", - "C5478G", - "C5479A", - "A5481G", - "A5484T", - "G5485A", - "C5492T", - "G5497C", - "A5502C", - "G5503C", - "A5507T", - "C5576A", - "T5579G", - "C5580T", - "A5586G", - "G5591C", - "G5592A", - "C5594T", - "A5597C", - "T5603C", - "C5606T", - "A5624T", - "C5627A", - "T5633A", - "G5639T", - "G5660A", - "A5672T", - "T5689A", - "C5693T", - "A5747G", - "G5756A", - "A5768G", - "T5781C", - "G5786A", - "A5787C", - "C5792A", - "C5841G", - "T5842C", - "A5843T", - "C5844T", - "C5870G", - "A5876G", - "C5900T", - "G5903A", - "G5906A", - "G5912A", - "C5915T", - "C5924A", - "A5925G", - "A5927G", - "A5930T", - "T5933C", - "G5945C", - "C5946A", - "A5947G", - "A5948C", - "C5951A", - "A5954C", - "G5957A", - "T5964C", - "G5970A", - "G5984T", - "G5987A", - "C5990T", - "T5993C", - "C5996T", - "C5999A", - "G6002A", - "C6003T", - "T6011C", - "T6014C", - "T6020C", - "T6026A", - "G6032C", - "T6044C", - "C6053T", - "A6054C", - "A6055G", - "C6059G", - "C6071T", - "C6074T", - "A6089G", - "T6098C", - "G6101T", - "T6104A", - "T6124C", - "T6125A", - "C6144A", - "G6155A", - "C6158T", - "T6164C", - "T6170C", - "A6176G", - "C6185A", - "G6203A", - "C6204T", - "C6209T", - "A6223G", - "T6228G", - "A6239G", - "T6248C", - "G6251C", - "G6254A", - "A6257G", - "A6263T", - "A6266T", - "G6269T", - "T6272A", - "G6281T", - "C6290T", - "G6329A", - "A6332G", - "C6347A", - "A6350G", - "T6351C", - "T6356C", - "A6389G", - "T6392C", - "T6401C", - "C6437T", - "A6452G", - "G6459A", - "T6460C", - "A6479G", - "A6485T", - "T6497C", - "T6518C", - "T6522C", - "G6524T", - "A6526G", - "A6533T", - "A6542C", - "G6554C", - "C6578T", - "A6584G", - "A6596T", - "T6608C", - "A6614G", - "G6617A", - "C6620T", - "G6623A", - "A6626G", - "G6632C", - "T6641A", - "C6651T", - "A6653G", - "G6662C", - "A6674G", - "C6680T", - "G6686A", - "T6692G", - "C6722T", - "A6723G", - "A6731C", - "C6755T", - "T6758C", - "C6761T", - "T6764C", - "T6767C", - "C6773G", - "T6800G", - "A6806G", - "T6815C", - "G6818C", - "A6830G", - "C6842T", - "T6851A", - "T6878C", - "C6879T", - "A6881G", - "G6887A", - "C6892A", - "A6893G", - "G6896A", - "C6897T", - "T6900C", - "G6902C", - "C6926T", - "T6932A", - "T6945C", - "C6953A", - "A6956G", - "A6974G", - "C6977A", - "A6986G", - "A6992C", - "C6998T", - "G7011A", - "C7016T", - "C7025T", - "C7037A", - "A7040T", - "G7058A", - "G7061C", - "C7067T", - "A7076C", - "T7091A", - "A7094C", - "T7103C", - "G7109A", - "C7118T", - "A7133G", - "C7148T", - "A7154G", - "A7169G", - "C7172A", - "G7199A", - "A7202G", - "C7208G", - "T7211C", - "T7226C", - "T7239A", - "C7241G", - "G7244A", - "A7253G", - "G7265A", - "A7268T", - "C7271T", - "C7274T", - "A7277G", - "A7280G", - "G7283A", - "G7292A", - "T7295C", - "G7307A", - "A7313C", - "A7322G", - "T7325C", - "T7331C", - "C7334T", - "A7335C", - "G7337T", - "A7338C", - "A7340C", - "A7346T", - "A7349G", - "C7350T", - "A7361G", - "A7364T", - "A7376C", - "A7382C", - "T7385A", - "C7389T", - "A7391T", - "C7395T", - "A7406G", - "A7409G", - "A7412G", - "A7416C", - "A7424G", - "G7428A", - "T7429C", - "T7436G", - "A7440G", - "C7442G", - "A7445T", - "T7448A", - "T7450C", - "G7451A", - "C7464T", - "A7466G", - "T7469C", - "C7472G", - "G7474A", - "A7480C", - "T7482G", - "A7484G", - "C7487T", - "G7489A", - "C7490A", - "T7491C", - "G7496A", - "G7503A", - "C7504A", - "A7509G", - "A7511G", - "T7538C", - "C7540T", - "T7550C", - "C7558A", - "A7560C", - "G7561C", - "C7567T", - "G7570A", - "G7594A", - "C7603T", - "A7605T", - "T7617A", - "G7622C", - "C7628A", - "A7636G", - "C7645T", - "G7666T", - "G7672A", - "G7675A", - "A7684G", - "C7690T", - "T7699G", - "C7711T", - "A7717G", - "C7726T", - "G7727A", - "T7735A", - "C7747T", - "A7756G", - "A7760C", - "A7761G", - "G7764A", - "G7769C", - "C7771A", - "C7773A", - "A7777G", - "A7778C", - "A7782C", - "A7785C", - "G7788A", - "G7791C", - "A7796G", - "A7797G", - "G7799A", - "G7800A", - "G7804A", - "G7810T", - "A7811G", - "A7812G", - "G7813A", - "C7816A", - "G7821C", - "A7836G", - "G7837T", - "G7840T", - "C7844G", - "G7846C", - "T7849A", - "A7851C", - "T7852C", - "G7859A", - "A7861C", - "G7868A", - "A7872C", - "C7884T", - "C7885T", - "A7897T", - "G7909A", - "C7912G", - "G7939A", - "T7951C", - "T7969C", - "C7975A", - "C7978T", - "G7987A", - "G7996A", - "T8000C", - "A8006C", - "G8011C", - "G8029A", - "G8042A", - "T8043C", - "T8044C", - "G8051T", - "T8083C", - "G8101C", - "A8104T", - "G8107A", - "T8122C", - "A8125C", - "C8128T", - "G8163A", - "C8164T", - "T8173C", - "A8179C", - "C8182G", - "T8194C", - "T8221G", - "C8227G", - "A8245C", - "G8254C", - "A8266G", - "G8269T", - "G8272C", - "C8275G", - "T8278C", - "G8284A", - "T8299C", - "A8302G", - "C8326A", - "C8338T", - "G8341A", - "T8353C", - "G8356A", - "T8362C", - "T8365C", - "G8371A", - "C8377T", - "A8383G", - "G8395T", - "C8407T", - "C8438A", - "A8439C", - "A8443G", - "A8464G", - "A8467C", - "C8482A", - "G8485A", - "C8488T", - "C8491T", - "T8493C", - "T8494C", - "C8537T", - "A8555C", - "A8557G", - "T8566C", - "G8572A", - "T8581C", - "T8590C", - "G8593A", - "A8596T", - "G8599A", - "G8616A", - "A8621G", - "A8624C", - "T8629C", - "G8638T", - "C8644T", - "T8647C", - "G8683A", - "T8695C", - "T8698C", - "A8701G", - "T8704A", - "T8722C", - "C8725T", - "T8737C", - "G8749A", - "T8767C", - "G8779C", - "C8781A", - "C8782G", - "T8785C", - "A8794T", - "C8798T", - "C8815G", - "C8827G", - "T8845C", - "G8848T", - "T8854G", - "T8860C", - "G8863C", - "A8870C", - "G8872C", - "C8880A", - "G8884A", - "C8893T", - "A8902G", - "A8911G", - "C8926T", - "A8953G", - "A8958C", - "T8959A", - "A8965G", - "A8971G", - "C8982G", - "T8986C", - "C8989T", - "A9001C", - "G9002A", - "A9010T", - "A9018G", - "A9019C", - "C9025T", - "T9031C", - "A9037C", - "C9043G", - "G9045A", - "A9046G", - "G9048A", - "A9049C", - "C9067T", - "C9070G", - "G9073C", - "C9076T", - "T9094A", - "T9095C", - "T9100C", - "C9112G", - "T9116G", - "C9124G", - "T9139A", - "A9143C", - "C9144A", - "C9148T", - "A9160G", - "G9164A", - "G9166C", - "C9169T", - "A9176T", - "A9179G", - "A9180C", - "G9181A", - "C9187A", - "C9209A", - "A9210C", - "G9211C", - "T9213A", - "A9234C", - "A9242C", - "A9247T", - "A9253T", - "C9254T", - "G9256A", - "A9268G", - "G9274A", - "T9277C", - "G9292T", - "C9295G", - "A9298G", - "A9301G", - "C9313A", - "A9316G", - "A9325G", - "T9339A", - "T9341C", - "G9343C", - "G9347T", - "A9349C", - "A9358G", - "C9361T", - "A9382G", - "G9388A", - "C9394T", - "T9400C", - "C9403T", - "A9409T", - "G9412T", - "T9415C", - "C9416T", - "C9422T", - "T9430A", - "A9432G", - "T9436C", - "C9439G", - "T9445C", - "A9460C", - "C9476A", - "A9496T", - "T9499A", - "G9506A", - "G9509A", - "T9510C", - "G9514A", - "T9517C", - "C9523A", - "C9526G", - "A9532G", - "A9533C", - "T9546A", - "T9547C", - "A9556C", - "C9559T", - "G9568T", - "A9571G", - "T9576A", - "C9598A", - "A9601C", - "T9604C", - "T9640C", - "T9655C", - "C9664G", - "G9670T", - "T9673A", - "A9679G", - "A9692G", - "T9694G", - "T9702C", - "C9706A", - "T9709A", - "T9728C", - "T9730C", - "C9739G", - "T9744C", - "T9745A", - "G9748C", - "C9752T", - "A9754G", - "T9760G", - "C9778T", - "C9781T", - "A9785T", - "C9791G", - "C9796T", - "G9805C", - "C9818A", - "C9820G", - "C9832A", - "C9841A", - "C9850A", - "G9853A", - "A9869C", - "T9891G", - "T9896C", - "G9901C", - "C9904T", - "C9916G", - "T9917C", - "G9919T", - "A9925G", - "C9934T", - "C9935T", - "G9937A", - "G9947A", - "T9955C", - "G9974C", - "G9976A", - "C9979A", - "G9989A", - "C9993T", - "G10006A", - "G10026A", - "C10027T", - "A10030G", - "A10036G", - "A10052G", - "C10069G", - "C10079T", - "A10081G", - "C10082G", - "A10091G", - "A10093C", - "A10096T", - "A10099G", - "G10105A", - "A10106G", - "C10108A", - "A10110G", - "G10114A", - "C10120T", - "G10124C", - "T10130C", - "G10132A", - "A10144G", - "A10163C", - "G10165T", - "G10175T", - "C10180T", - "C10189T", - "T10204C", - "T10205C", - "C10208A", - "C10209A", - "A10210G", - "A10211G", - "C10212T", - "T10213G", - "C10216T", - "T10222C", - "A10237G", - "A10246C", - "C10261T", - "T10279C", - "T10285C", - "C10291T", - "A10292T", - "G10297A", - "C10303T", - "C10312T", - "A10314G", - "G10315A", - "T10326C", - "C10343T", - "T10344C", - "T10345C", - "G10346A", - "G10348A", - "A10359T", - "A10363C", - "C10366T", - "C10393T", - "C10399G", - "C10405A", - "A10408T", - "C10420G", - "A10423G", - "A10430G", - "A10433G", - "C10435A", - "T10441C", - "G10460A", - "A10464G", - "T10471C", - "A10483G", - "A10484G", - "C10485T", - "T10492C", - "A10504T", - "T10507C", - "A10513C", - "C10516A", - "C10522T", - "C10525G", - "A10529G", - "C10531G", - "T10540C", - "G10546A", - "T10555C", - "T10564C", - "T10567C", - "T10570G", - "G10573A", - "A10582T", - "A10585G", - "A10594G", - "C10606T", - "A10607C", - "C10609T", - "T10623C", - "T10625A", - "C10630T", - "T10631A", - "C10632A", - "A10633C", - "C10651G", - "C10654T", - "A10657G", - "G10658A", - "G10660A", - "G10666A", - "A10675C", - "A10681C", - "G10682A", - "G10684A", - "A10711T", - "A10726G", - "A10740G", - "G10747T", - "A10756G", - "T10758A", - "C10765A", - "C10771T", - "T10784C", - "C10788T", - "C10792T", - "A10796G", - "T10798G", - "C10799A", - "C10801A", - "C10804T", - "A10807G", - "T10810C", - "T10816C", - "T10832C", - "C10846A", - "T10856C", - "C10886T", - "C10893G", - "C10897T", - "A10900G", - "A10904T", - "C10907T", - "C10912T", - "T10924C", - "G10951T", - "C10969T", - "G10972A", - "G10981A", - "C10990A", - "G10994A", - "G10996T", - "T11008C", - "T11011A", - "G11024T", - "G11027T", - "C11028T", - "A11029C", - "C11032A", - "G11035T", - "C11036G", - "C11040T", - "G11044A", - "G11053A", - "G11054T", - "C11055T", - "A11060C", - "A11062G", - "C11068T", - "G11071A", - "A11077C", - "C11083A", - "G11097A", - "G11098A", - "T11114A", - "A11118T", - "T11119A", - "G11120C", - "G11125A", - "T11137C", - "C11146G", - "G11149T", - "T11161C", - "G11164A", - "C11170T", - "G11176A", - "T11177C", - "C11200G", - "G11206C", - "A11209T", - "A11212G", - "C11236A", - "G11239C", - "T11273C", - "A11275T", - "G11281A", - "T11284A", - "G11293T", - "A11347G", - "A11360G", - "G11361A", - "T11365C", - "C11366G", - "C11383T", - "T11387A", - "C11412T", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P6S, Y8F, M13A, N47S, A74V, T75A, G79V, Q86P, A87T, T93N, N102K, V108T, M131L, D160E, E194D; E1: A11V, V31I, T32I, V36I, S59F, Y72N, V103I, T109M, T116A, I154V, S155N, V159I, T208I, I220V, A226T, R247K, I263V, S275F, G298S, V307T, S310T, I332V, F343L, D345E, L352M, N360S, T372K, L373V, I430V; E2: K37R, V45I, L47I, S57P, L61V, G63S, T65V, D69N, M70L, H71Y, E75V, I77V, K160Q, T177S, Q187R, A192S, I207V, T216S, A224S, D249E, I276V, S282F, H299Q, Q324H, L369F, V382I, A394V, R407Q, V414F; E3: K26A, A32M, I33M, A36K, V38I; nsP1: I81V, K85R, E111D, L162I, R171*, V239I, D353E, E400D, E403D, L455P, S458N, E477I, L481I, A489T, K501R, V508I; nsP2: A48V, S54A, V108I, H109N, S126T, E129D, K138R, R139K, I217V, M218I, K292R, R302Q, K335R, K350R, I389V, P404A, P439T, R458K, K463R, R487K, V501I, A502V, H503Q, V515A, R543K, V563A, S592G, S596C, R614H, T615S, H617Q, K630R, M641L, T647N, S669H, A704T, L752T, V757I, R788H; nsP3: K26R, K40R, E80D, D87E, S103T, T198V, A228V, H312Q, Y323H, K332Q, P344Q, S346N, T349E, T352N, P353S, A354V, V357L, L358I, D362I, A363P, R365V, T368A, P369S, P371I, V372D, A378T, D380E, I382M, V385T, S388T, T389M, W390L, L391P, *393S, H394C, V400I, H404Q, V406I, F407L, N410D, I430V, S437N, M440L, N450Y, S451C, T467I, T478K, P479T, P480S, Q481*, A482V, *485Q, A486T, T490A, R515T, A516V, V533R, R535G, D554E; nsP4: V21A, I34N, E43I, A47S, R78K, I80L, S82G, T90S, A113V, S116N, V127M, N243C, S284R, C365S, M437V, N456Q, E499I, Y550Q, T554A, F562H, R590Q, N591S, A593P" - }, - "mutations": { - "CP": [ - "P6S", - "Y8F", - "M13A", - "N47S", - "A74V", - "T75A", - "G79V", - "Q86P", - "A87T", - "T93N", - "N102K", - "V108T", - "M131L", - "D160E", - "E194D" - ], - "E1": [ - "A11V", - "V31I", - "T32I", - "V36I", - "S59F", - "Y72N", - "V103I", - "T109M", - "T116A", - "I154V", - "S155N", - "V159I", - "T208I", - "I220V", - "A226T", - "R247K", - "I263V", - "S275F", - "G298S", - "V307T", - "S310T", - "I332V", - "F343L", - "D345E", - "L352M", - "N360S", - "T372K", - "L373V", - "I430V" - ], - "E2": [ - "K37R", - "V45I", - "L47I", - "S57P", - "L61V", - "G63S", - "T65V", - "D69N", - "M70L", - "H71Y", - "E75V", - "I77V", - "K160Q", - "T177S", - "Q187R", - "A192S", - "I207V", - "T216S", - "A224S", - "D249E", - "I276V", - "S282F", - "H299Q", - "Q324H", - "L369F", - "V382I", - "A394V", - "R407Q", - "V414F" - ], - "E3": [ - "K26A", - "A32M", - "I33M", - "A36K", - "V38I" - ], - "nsP1": [ - "I81V", - "K85R", - "E111D", - "L162I", - "R171*", - "V239I", - "D353E", - "E400D", - "E403D", - "L455P", - "S458N", - "E477I", - "L481I", - "A489T", - "K501R", - "V508I" - ], - "nsP2": [ - "A48V", - "S54A", - "V108I", - "H109N", - "S126T", - "E129D", - "K138R", - "R139K", - "I217V", - "M218I", - "K292R", - "R302Q", - "K335R", - "K350R", - "I389V", - "P404A", - "P439T", - "R458K", - "K463R", - "R487K", - "V501I", - "A502V", - "H503Q", - "V515A", - "R543K", - "V563A", - "S592G", - "S596C", - "R614H", - "T615S", - "H617Q", - "K630R", - "M641L", - "T647N", - "S669H", - "A704T", - "L752T", - "V757I", - "R788H" - ], - "nsP3": [ - "K26R", - "K40R", - "E80D", - "D87E", - "S103T", - "T198V", - "A228V", - "H312Q", - "Y323H", - "K332Q", - "P344Q", - "S346N", - "T349E", - "T352N", - "P353S", - "A354V", - "V357L", - "L358I", - "D362I", - "A363P", - "R365V", - "T368A", - "P369S", - "P371I", - "V372D", - "A378T", - "D380E", - "I382M", - "V385T", - "S388T", - "T389M", - "W390L", - "L391P", - "*393S", - "H394C", - "V400I", - "H404Q", - "V406I", - "F407L", - "N410D", - "I430V", - "S437N", - "M440L", - "N450Y", - "S451C", - "T467I", - "T478K", - "P479T", - "P480S", - "Q481*", - "A482V", - "*485Q", - "A486T", - "T490A", - "R515T", - "A516V", - "V533R", - "R535G", - "D554E" - ], - "nsP4": [ - "V21A", - "I34N", - "E43I", - "A47S", - "R78K", - "I80L", - "S82G", - "T90S", - "A113V", - "S116N", - "V127M", - "N243C", - "S284R", - "C365S", - "M437V", - "N456Q", - "E499I", - "Y550Q", - "T554A", - "F562H", - "R590Q", - "N591S", - "A593P" - ], - "nuc": [ - "C11T", - "A19T", - "C29T", - "A74G", - "C77T", - "C161T", - "T188C", - "G209A", - "T221C", - "T228C", - "T251C", - "C263T", - "T266A", - "C281T", - "A285G", - "A298G", - "C302T", - "G305T", - "T311C", - "C326T", - "A329G", - "C353T", - "C356T", - "G359A", - "C365A", - "G377C", - "T378C", - "G380A", - "C407T", - "C426T", - "A431G", - "C437T", - "T440C", - "T443A", - "C446T", - "C452T", - "C455T", - "C458T", - "T467C", - "G479A", - "G485T", - "C491T", - "C506T", - "A509G", - "G512A", - "A518T", - "C528A", - "G548A", - "A555T", - "C560G", - "C566T", - "A572C", - "C581T", - "T590G", - "G602A", - "C605T", - "C606T", - "G617C", - "C620T", - "A623T", - "C632T", - "C638T", - "C644T", - "T647C", - "G650A", - "G653A", - "C657T", - "A659G", - "A674C", - "T677C", - "C678T", - "T686C", - "C692T", - "T695C", - "G701A", - "C710T", - "A716T", - "C717T", - "C722T", - "C725T", - "C726T", - "T758C", - "G759A", - "C770A", - "T785C", - "C791T", - "G797A", - "A806G", - "C807T", - "C815T", - "T822C", - "A827T", - "A854G", - "T905A", - "C935T", - "C968T", - "C1001T", - "A1004G", - "G1034C", - "A1055T", - "T1056C", - "G1100C", - "C1103A", - "A1115G", - "C1119T", - "G1136A", - "G1148A", - "T1154C", - "G1166A", - "C1175T", - "G1184A", - "T1187C", - "C1190T", - "C1191T", - "C1194T", - "G1205T", - "C1208A", - "A1214T", - "A1229T", - "G1235A", - "T1238C", - "G1241A", - "A1244T", - "T1247C", - "A1253T", - "A1259G", - "A1265G", - "G1268A", - "G1274A", - "A1275C", - "A1277G", - "T1280C", - "G1289C", - "A1292G", - "C1301T", - "C1340T", - "C1346T", - "T1349C", - "T1352C", - "C1355T", - "G1358A", - "C1361G", - "C1364T", - "A1370G", - "T1373A", - "C1376T", - "C1379T", - "C1388T", - "A1397G", - "G1400A", - "T1408C", - "A1409T", - "T1415C", - "G1417A", - "G1427A", - "C1430T", - "G1436T", - "G1439A", - "A1443C", - "G1457A", - "A1472G", - "G1473A", - "A1474T", - "C1485A", - "G1487A", - "T1496A", - "T1502C", - "G1509A", - "G1511A", - "G1514A", - "A1523C", - "A1529G", - "T1535C", - "C1544T", - "A1546G", - "C1553T", - "A1559G", - "C1565A", - "G1566A", - "T1572C", - "G1574A", - "C1583A", - "T1586G", - "T1589G", - "G1598A", - "T1604A", - "G1610A", - "C1622G", - "C1626T", - "A1649T", - "C1652T", - "A1658C", - "C1668A", - "G1673A", - "C1674T", - "C1685T", - "C1697T", - "A1703G", - "C1706T", - "A1709G", - "C1712T", - "C1715T", - "C1718T", - "C1721T", - "T1724C", - "C1728T", - "C1748G", - "C1749A", - "G1751A", - "C1754T", - "G1757A", - "T1763G", - "A1778C", - "A1781T", - "C1792T", - "G1799A", - "C1802A", - "T1805G", - "T1808C", - "T1809G", - "T1814A", - "C1832T", - "G1835T", - "T1841G", - "C1844T", - "G1862C", - "G1868A", - "G1871A", - "C1883T", - "C1886A", - "G1889A", - "C1895T", - "A1898G", - "A1901T", - "T1913C", - "C1919T", - "C1922T", - "G1937A", - "C1943T", - "C1956T", - "C1961T", - "T1967C", - "G1971A", - "C1974A", - "C1976T", - "C1986T", - "C1991T", - "C2009T", - "G2026C", - "A2030G", - "A2036T", - "A2042G", - "C2046T", - "C2051T", - "C2054T", - "A2062G", - "G2065A", - "G2066A", - "C2072T", - "G2081A", - "A2087G", - "T2096C", - "A2099C", - "C2111T", - "T2115C", - "A2117G", - "A2123G", - "G2129A", - "G2150A", - "T2154C", - "A2159G", - "C2171A", - "A2174T", - "C2177A", - "C2180T", - "G2183A", - "G2189T", - "T2198A", - "C2207A", - "G2210A", - "A2216C", - "A2219G", - "C2222T", - "C2231A", - "C2234T", - "C2243T", - "T2246C", - "C2249T", - "A2255G", - "G2285A", - "C2288T", - "T2294C", - "A2298G", - "C2300T", - "G2303C", - "C2328T", - "G2330A", - "C2348T", - "T2351A", - "A2366G", - "A2372C", - "T2375C", - "C2390T", - "A2408G", - "A2417T", - "A2426C", - "C2429G", - "T2432C", - "T2435C", - "A2436C", - "A2438C", - "G2441T", - "C2447T", - "C2453T", - "T2462A", - "G2465A", - "G2474T", - "A2477C", - "C2507T", - "T2522C", - "A2524G", - "T2534C", - "C2537T", - "T2540C", - "G2554A", - "C2564T", - "C2573A", - "T2576C", - "T2594G", - "C2606G", - "C2612T", - "A2633G", - "A2639C", - "C2642T", - "C2645T", - "T2651C", - "A2653G", - "A2654G", - "T2660A", - "G2663A", - "T2681A", - "C2684G", - "A2698G", - "C2708T", - "T2711C", - "C2715T", - "T2720G", - "A2753T", - "T2756C", - "A2762G", - "T2765C", - "A2783G", - "C2792A", - "G2801A", - "G2810A", - "A2814G", - "C2816T", - "C2831T", - "G2834A", - "T2850C", - "G2852A", - "T2855C", - "C2859G", - "C2861A", - "C2864T", - "A2870G", - "T2879C", - "G2885A", - "C2894T", - "G2897A", - "C2903T", - "C2909T", - "T2921C", - "T2922C", - "C2933T", - "A2936T", - "C2948T", - "C2951T", - "C2964A", - "A2969T", - "T2972C", - "C2985T", - "C2987G", - "T3011C", - "T3014C", - "G3022A", - "T3030C", - "G3035A", - "A3037G", - "C3041T", - "T3053C", - "C3056G", - "T3071C", - "C3074T", - "G3089A", - "G3098A", - "T3101C", - "G3109A", - "C3116A", - "C3119T", - "T3126C", - "G3128A", - "G3134A", - "A3137G", - "G3149C", - "G3150A", - "C3154T", - "T3158A", - "T3161C", - "G3164A", - "T3193C", - "T3197C", - "C3204T", - "C3212A", - "C3230T", - "A3233G", - "C3236T", - "C3243T", - "A3254C", - "A3263G", - "G3272T", - "G3277A", - "G3278A", - "C3281T", - "C3293T", - "G3308C", - "C3321T", - "C3326T", - "A3329G", - "G3332A", - "G3335A", - "T3337C", - "C3338G", - "G3341A", - "G3344A", - "C3350T", - "T3356C", - "A3362G", - "A3365G", - "A3374T", - "A3389C", - "C3395T", - "C3396T", - "C3407T", - "C3410T", - "T3416C", - "A3423G", - "G3434A", - "A3435T", - "C3440T", - "C3443T", - "C3446T", - "G3452C", - "C3458T", - "C3461G", - "A3464G", - "T3470G", - "T3476A", - "C3482A", - "A3485G", - "G3490A", - "A3492T", - "A3497G", - "C3500A", - "T3506C", - "C3512T", - "A3518G", - "G3521A", - "C3524T", - "T3527C", - "T3530C", - "A3533G", - "C3534T", - "A3538G", - "C3542T", - "C3548T", - "T3551C", - "C3557T", - "T3560A", - "A3570C", - "G3572A", - "C3578A", - "A3581C", - "G3587A", - "C3589A", - "T3600C", - "G3602A", - "G3608A", - "C3611T", - "T3614C", - "C3623T", - "T3632G", - "A3644C", - "A3654C", - "G3655A", - "G3659A", - "T3692C", - "A3693C", - "T3704C", - "T3716C", - "T3719C", - "G3731A", - "A3743C", - "C3752T", - "C3756T", - "G3759A", - "T3773C", - "C3774T", - "C3779T", - "A3782T", - "A3809T", - "C3815T", - "T3818C", - "C3827T", - "A3828C", - "G3830A", - "T3842C", - "G3848C", - "G3854T", - "A3857T", - "C3861A", - "A3863G", - "T3878C", - "G3881A", - "T3893A", - "C3903A", - "T3904C", - "A3908G", - "A3917G", - "G3918A", - "G3920A", - "C3956T", - "C3959A", - "T3968C", - "C3971T", - "C3980T", - "T3983A", - "C3986A", - "A3989G", - "T3995C", - "C3998T", - "G4012A", - "A4013C", - "G4016A", - "C4019T", - "A4022G", - "A4028C", - "T4037A", - "G4049A", - "G4055T", - "C4058T", - "C4061T", - "T4067C", - "A4073T", - "A4079G", - "G4082A", - "C4085A", - "C4088T", - "T4094C", - "G4097C", - "C4103T", - "A4108G", - "A4118T", - "C4121G", - "C4130A", - "C4139T", - "A4149C", - "A4150G", - "A4151C", - "A4160G", - "T4166C", - "T4169C", - "A4178C", - "C4181A", - "A4190C", - "A4193G", - "C4196A", - "C4197A", - "A4199G", - "A4217T", - "G4220A", - "C4223T", - "G4238A", - "C4247T", - "C4250T", - "C4253T", - "A4256G", - "A4262G", - "G4268T", - "A4271T", - "T4277C", - "A4280G", - "G4283A", - "C4284T", - "C4292A", - "G4295T", - "G4301A", - "G4304A", - "C4307A", - "C4319T", - "C4325T", - "A4335C", - "A4337C", - "T4338A", - "T4340C", - "G4346A", - "C4349T", - "T4361G", - "C4367T", - "A4370T", - "T4379A", - "C4389A", - "C4404T", - "T4413C", - "G4418T", - "A4421G", - "T4424A", - "G4427A", - "C4433T", - "A4436C", - "C4439T", - "G4448A", - "C4466T", - "A4472G", - "G4478A", - "G4481T", - "T4502A", - "A4503C", - "C4514T", - "C4529T", - "C4535T", - "G4544A", - "G4550A", - "A4559T", - "T4562C", - "C4574A", - "G4580A", - "G4586C", - "G4589A", - "C4592T", - "C4595G", - "T4613C", - "C4616T", - "A4623G", - "C4624T", - "A4631G", - "C4637A", - "C4640T", - "G4643A", - "C4647T", - "A4658T", - "G4661A", - "C4667T", - "G4673A", - "A4676G", - "C4682T", - "A4691G", - "C4697T", - "A4700G", - "G4709C", - "T4712A", - "C4714T", - "A4721G", - "C4727T", - "G4733A", - "T4740C", - "T4745C", - "A4754C", - "C4760T", - "T4772C", - "A4773C", - "G4775A", - "T4778G", - "T4787C", - "G4793A", - "A4802G", - "C4808A", - "A4811T", - "T4817C", - "A4823G", - "C4832T", - "T4833C", - "G4835C", - "C4838T", - "T4856G", - "A4892G", - "T4898A", - "A4901G", - "C4907T", - "A4910G", - "T4919C", - "G4922A", - "G4934A", - "A4940C", - "T4943G", - "C4967G", - "C4970T", - "G4988A", - "T4994G", - "G4997A", - "T4998C", - "T5009A", - "C5018T", - "C5021T", - "G5024C", - "A5025C", - "C5062A", - "G5068A", - "A5076G", - "C5077A", - "C5086A", - "G5087T", - "C5088T", - "C5092T", - "A5099G", - "G5100C", - "C5103A", - "T5105C", - "A5108C", - "C5111T", - "G5115A", - "A5116T", - "G5118C", - "A5120T", - "A5124G", - "G5125T", - "G5126T", - "T5132C", - "A5133G", - "A5135C", - "C5136T", - "C5138T", - "C5142A", - "C5143T", - "T5146A", - "G5163A", - "A5165G", - "C5171G", - "T5174C", - "A5177G", - "G5184A", - "T5185C", - "G5194C", - "C5195G", - "C5197T", - "G5200T", - "T5203C", - "A5207T", - "A5209C", - "C5211T", - "A5212G", - "G5219C", - "A5225G", - "G5229A", - "T5243A", - "G5247A", - "T5250C", - "A5259G", - "C5270T", - "A5273T", - "A5279C", - "C5294T", - "T5300C", - "A5303G", - "G5309T", - "G5312A", - "C5315T", - "A5318T", - "A5319G", - "A5321G", - "G5341A", - "A5348G", - "A5349C", - "A5357G", - "A5379T", - "T5381C", - "A5382T", - "A5408T", - "T5411C", - "A5414G", - "T5417A", - "C5420T", - "C5431T", - "A5435G", - "G5453T", - "C5464A", - "C5466A", - "C5469T", - "C5472T", - "G5474A", - "C5476T", - "T5484C", - "G5487A", - "G5495T", - "A5498G", - "A5499G", - "C5505T", - "T5507G", - "G5510A", - "C5574A", - "G5575C", - "A5576T", - "C5578T", - "T5582C", - "C5597G", - "C5603T", - "C5607T", - "G5621A", - "T5624C", - "G5628A", - "T5629G", - "A5634G", - "C5642T", - "G5648A", - "T5657C", - "T5672G", - "G5678A", - "T5690C", - "T5693A", - "A5702G", - "T5711C", - "T5720C", - "T5736C", - "G5747A", - "A5750T", - "A5753G", - "A5756G", - "T5764C", - "T5766C", - "T5771C", - "G5783T", - "A5792G", - "A5795G", - "T5803A", - "T5810C", - "C5826T", - "G5829A", - "A5830T", - "A5837G", - "G5841A", - "C5842G", - "C5849T", - "A5858G", - "C5862T", - "C5867T", - "C5882T", - "A5885G", - "A5891G", - "C5894T", - "G5897A", - "T5900C", - "A5912G", - "T5930C", - "G5935A", - "A5940C", - "T5942A", - "A5946G", - "C5954G", - "T5963C", - "C5964T", - "A5969G", - "A5970T", - "A6002G", - "T6008C", - "C6020T", - "T6029C", - "C6032T", - "A6038C", - "C6040T", - "G6041T", - "A6047G", - "G6049A", - "C6050T", - "G6056A", - "G6065C", - "T6071G", - "C6077T", - "G6080T", - "G6081A", - "G6086A", - "A6092G", - "C6098T", - "T6101A", - "T6119C", - "C6137T", - "C6140G", - "A6155G", - "T6158C", - "C6170T", - "C6173T", - "G6176A", - "A6185G", - "A6200C", - "C6212T", - "A6218T", - "C6227T", - "A6230T", - "C6242G", - "C6248T", - "G6257A", - "T6263G", - "G6275A", - "C6278T", - "T6281C", - "C6282T", - "G6296A", - "T6302G", - "A6308C", - "A6312C", - "A6314G", - "C6326T", - "G6332A", - "A6341G", - "G6344A", - "A6347T", - "C6351T", - "C6356T", - "T6362C", - "T6368C", - "C6383T", - "C6392T", - "G6395A", - "C6401T", - "G6419A", - "C6422T", - "A6425G", - "A6429T", - "A6430G", - "C6431T", - "C6434T", - "C6467T", - "A6491G", - "C6497T", - "C6501T", - "A6509T", - "G6512A", - "T6515C", - "T6521C", - "C6542T", - "C6551T", - "C6554A", - "C6560T", - "G6575A", - "T6590A", - "A6593T", - "A6599C", - "C6608G", - "A6611G", - "C6615A", - "T6620C", - "A6623G", - "G6626A", - "C6632A", - "C6644A", - "G6650A", - "T6656C", - "T6665C", - "C6666T", - "G6668A", - "C6677T", - "A6683T", - "T6687C", - "A6698G", - "T6704C", - "C6710T", - "C6711T", - "G6713A", - "T6716G", - "T6722C", - "C6732T", - "T6737C", - "G6746C", - "A6752G", - "C6767T", - "G6773T", - "G6776A", - "T6795A", - "C6801T", - "T6809C", - "C6818T", - "G6857A", - "C6861T", - "A6863G", - "T6869C", - "C6878T", - "G6881A", - "T6884C", - "G6893A", - "A6896G", - "C6902T", - "C6906T", - "A6908G", - "G6917C", - "T6920A", - "T6923C", - "T6926A", - "A6938C", - "A6947T", - "A6953G", - "G6956A", - "C6971T", - "G6974T", - "A6977T", - "G6986A", - "C6989T", - "C6992T", - "C7001T", - "A7011G", - "C7022T", - "C7028T", - "C7031T", - "C7034T", - "T7040C", - "T7050C", - "A7052C", - "T7067A", - "A7068C", - "C7070G", - "A7073G", - "C7076T", - "T7079C", - "A7082T", - "C7088T", - "A7091C", - "C7106T", - "A7109T", - "A7115C", - "C7127T", - "A7130G", - "G7175A", - "C7178T", - "A7181T", - "G7190A", - "C7193A", - "C7196A", - "G7197A", - "A7198T", - "G7205C", - "C7214T", - "T7217C", - "A7220C", - "C7226T", - "T7229C", - "C7259T", - "A7265G", - "T7268C", - "C7275T", - "A7298G", - "A7304T", - "A7307C", - "A7310G", - "C7313T", - "G7322A", - "C7328T", - "A7343C", - "T7347C", - "T7350C", - "C7352G", - "G7358A", - "G7361A", - "A7362G", - "T7364C", - "G7379A", - "T7386C", - "T7387A", - "T7388C", - "G7394A", - "G7397A", - "T7400C", - "G7418T", - "T7421C", - "A7433C", - "C7454T", - "T7460C", - "T7463C", - "C7469A", - "A7470C", - "G7471A", - "A7474G", - "G7479C", - "A7481T", - "T7487C", - "A7490G", - "A7496G", - "G7502A", - "T7508A", - "G7511A", - "C7514T", - "A7525G", - "C7538T", - "G7541A", - "A7544G", - "C7549T", - "T7567C", - "A7570T", - "C7577T", - "A7584T", - "A7598G", - "T7599C", - "G7621T", - "G7648A", - "C7654T", - "T7657C", - "T7660C", - "C7661T", - "G7663A", - "T7666C", - "A7672G", - "A7675G", - "T7690A", - "T7693A", - "A7701G", - "C7703T", - "G7714A", - "C7720T", - "G7723A", - "G7732A", - "A7735C", - "G7762T", - "A7771T", - "G7774A", - "C7782T", - "A7784G", - "A7792G", - "G7797T", - "T7810C", - "A7818C", - "G7820A", - "G7834A", - "C7839A", - "T7840C", - "G7843A", - "C7846A", - "G7855A", - "G7858A", - "C7861T", - "T7867G", - "G7883A", - "T7884C", - "T7885C", - "C7888T", - "G7903A", - "C7918T", - "A7924G", - "G7927A", - "T7933A", - "C7945T", - "C7951T", - "A7952T", - "C7960T", - "C7969T", - "C7972T", - "A7987T", - "C7990T", - "C8005T", - "G8008A", - "T8017C", - "C8032T", - "C8038T", - "C8041A", - "C8044T", - "G8047T", - "T8056G", - "T8080C", - "G8086A", - "C8092T", - "A8095C", - "C8101T", - "G8116A", - "C8122T", - "C8137A", - "G8143T", - "A8146G", - "C8149T", - "C8155G", - "C8161T", - "C8170T", - "A8176C", - "C8194T", - "G8200A", - "A8212G", - "A8218T", - "G8224A", - "T8236C", - "C8239T", - "C8242A", - "C8254A", - "C8260T", - "G8266C", - "C8267A", - "T8269A", - "A8284G", - "T8293G", - "C8299T", - "G8302A", - "T8308C", - "A8311G", - "C8317T", - "C8318T", - "C8329T", - "T8350C", - "G8359A", - "C8362T", - "C8365A", - "T8368A", - "G8383A", - "G8410T", - "C8422T", - "A8431T", - "A8440T", - "G8443A", - "C8461A", - "A8462G", - "A8463C", - "G8464A", - "G8473A", - "T8476C", - "T8477C", - "G8480A", - "C8481T", - "A8482G", - "A8485G", - "T8491C", - "G8492A", - "C8493A", - "C8494G", - "G8498A", - "C8506T", - "G8509T", - "C8515T", - "G8521A", - "C8522T", - "T8536G", - "T8537C", - "G8542A", - "C8566T", - "A8572G", - "C8576T", - "G8578A", - "C8581T", - "C8602T", - "C8620T", - "C8623G", - "C8629T", - "T8638A", - "C8641T", - "T8644C", - "T8653G", - "A8656C", - "C8659T", - "T8662A", - "G8665A", - "G8668A", - "G8671A", - "A8673G", - "G8674A", - "A8683G", - "C8686T", - "G8696A", - "G8701A", - "C8702A", - "T8710A", - "C8713A", - "G8716A", - "C8726T", - "G8728A", - "T8732C", - "A8740G", - "T8744G", - "A8746T", - "A8749G", - "G8750A", - "A8756G", - "C8757T", - "C8758T", - "C8767T", - "G8768A", - "C8770T", - "A8771C", - "C8774T", - "C8776T", - "A8787T", - "G8791A", - "A8792G", - "G8797A", - "A8806G", - "G8809T", - "C8813T", - "G8815A", - "C8830T", - "T8833C", - "A8842T", - "C8845T", - "T8851C", - "G8854A", - "C8857T", - "T8866C", - "T8869A", - "A8881G", - "A8884C", - "C8890T", - "T8893C", - "A8917C", - "A8923C", - "C8932T", - "C8941T", - "G8953A", - "T8956C", - "T8962C", - "G8971A", - "C8975T", - "G8977A", - "C8980T", - "T8983C", - "C8986T", - "T8989C", - "G9007A", - "C9019T", - "A9028C", - "T9034C", - "A9041C", - "G9043A", - "G9046A", - "C9049T", - "T9052G", - "C9058G", - "A9061G", - "T9067C", - "T9076G", - "G9085T", - "C9091T", - "A9092T", - "A9094C", - "G9112T", - "A9118G", - "A9123G", - "G9127A", - "T9133A", - "T9136A", - "G9137T", - "G9154T", - "A9178C", - "A9181T", - "A9182G", - "C9184G", - "G9190A", - "C9196A", - "G9202T", - "A9209T", - "C9211A", - "G9220A", - "G9229A", - "G9233T", - "T9235A", - "G9238A", - "G9244C", - "T9247G", - "T9254C", - "A9256G", - "C9265T", - "T9283A", - "G9295A", - "G9301A", - "C9310A", - "A9313G", - "A9322G", - "G9325A", - "A9337T", - "C9340T", - "G9346T", - "C9355G", - "A9364C", - "G9367A", - "C9371T", - "A9379C", - "T9385A", - "A9389G", - "T9394C", - "C9408T", - "T9409C", - "T9412A", - "C9415T", - "C9427T", - "A9431C", - "C9436T", - "C9442A", - "C9445T", - "C9446T", - "C9451T", - "T9454C", - "C9460G", - "G9463A", - "T9469A", - "A9475G", - "C9493A", - "C9505A", - "T9508A", - "C9517T", - "A9529T", - "A9535T", - "G9538A", - "G9544A", - "G9550T", - "C9556T", - "T9577C", - "A9589G", - "A9595T", - "A9607G", - "C9631T", - "C9643T", - "A9649G", - "C9655A", - "C9667T", - "C9668T", - "T9670C", - "T9674C", - "G9676A", - "G9697A", - "T9703C", - "G9707A", - "A9712C", - "G9715A", - "C9728T", - "C9730G", - "A9736G", - "C9740A", - "C9744T", - "C9748T", - "C9751T", - "C9763T", - "G9766A", - "G9783A", - "G9787A", - "G9799A", - "A9802C", - "G9803T", - "T9808G", - "T9823A", - "A9827C", - "G9829T", - "A9835G", - "T9856C", - "C9859T", - "C9860T", - "C9874T", - "G9877A", - "T9907C", - "G9910A", - "T9919C", - "T9931C", - "T9934C", - "A9937G", - "G9961T", - "G10012A", - "C10032T", - "C10048T", - "C10051A", - "A10061C", - "A10063C", - "T10084A", - "G10091A", - "C10093T", - "C10095T", - "G10099A", - "A10105G", - "G10106A", - "A10109C", - "A10123T", - "C10124T", - "C10129T", - "C10130T", - "G10135A", - "C10138T", - "C10141T", - "G10144A", - "C10153T", - "A10156G", - "C10163T", - "T10165A", - "C10174T", - "C10176T", - "T10189C", - "T10207C", - "G10210A", - "T10214A", - "G10219A", - "C10234T", - "G10237A", - "C10246G", - "A10249G", - "C10255T", - "T10273C", - "A10276C", - "C10288T", - "T10291C", - "A10294T", - "T10303G", - "G10306A", - "G10307A", - "G10309T", - "A10313C", - "A10324G", - "C10326T", - "T10333A", - "C10336T", - "C10345A", - "A10346G", - "A10348T", - "T10351C", - "T10357C", - "C10358T", - "T10366C", - "G10372T", - "C10375T", - "A10378T", - "G10390A", - "C10396T", - "C10402T", - "A10417G", - "G10420A", - "T10426G", - "A10432G", - "T10456A", - "T10459G", - "A10460G", - "G10464A", - "C10465T", - "C10468T", - "A10474C", - "G10475A", - "C10477T", - "A10495T", - "C10496T", - "T10498A", - "C10501A", - "A10573G", - "T10576C", - "G10579A", - "T10600C", - "A10603G", - "C10623T", - "C10633T", - "T10636C", - "T10648C", - "C10655T", - "G10657A", - "A10658G", - "C10661T", - "G10676A", - "A10684C", - "C10693T", - "A10696T", - "T10702G", - "T10711G", - "G10714A", - "T10717C", - "G10740A", - "T10747A", - "G10753A", - "T10768A", - "A10787G", - "A10789G", - "G10798C", - "C10810T", - "T10813C", - "C10816A", - "G10819A", - "C10824T", - "A10825T", - "T10828A", - "C10832T", - "T10840C", - "C10852T", - "C10856T", - "A10885G", - "A10891G", - "G10892A", - "T10894C", - "T10906C", - "C10918T", - "G10919A", - "T10920C", - "G10921A", - "T10928A", - "C10930G", - "T10960C", - "C10966T", - "A10994G", - "A10999C", - "C11008T", - "C11014T", - "A11023G", - "C11029G", - "A11032G", - "T11035A", - "T11054A", - "G11062T", - "T11065C", - "A11071G", - "A11079G", - "G11089A", - "C11095T", - "C11099T", - "C11101G", - "A11104G", - "A11107C", - "C11110T", - "A11113G", - "C11115A", - "T11116G", - "T11117G", - "C11128T", - "T11134C", - "C11143T", - "C11158T", - "C11161T", - "A11164G", - "A11167G", - "T11170C", - "A11176G", - "G11200T", - "C11206A", - "T11209C", - "G11218T", - "A11233G", - "C11240T", - "G11242A", - "C11254A", - "G11278A", - "A11288G", - "C11302T", - "A11329G", - "T11333C", - "A11340G", - "C11346A", - "G11347A", - "T11354C", - "A11358T", - "T11359A", - "A11363C", - "C11365T", - "G11366A", - "A11380C", - "T11383C", - "C11419T" - ] - } - }, - "name": "MK028853.1", - "node_attrs": { - "author": { - "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", - "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." - }, - "country": { - "confidence": { - "Argentina": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Argentina" - }, - "div": 0.20110887411809814, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2018.521917808219, - 2018.521917808219 - ], - "value": 2018.521917808219 - }, - "place_of_collection": { - "value": "Argentina" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2018": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2018" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: S325A; E2: S381A; E3: I21M, I33L; nsP1: S458C, T459S, T466S; nsP2: E145D, E639D; nsP3: V173Q, S284A, P343H, R347S, E355D, T381S, I382L, A405E, G484V, S518C; nsP4: S35A, E249D, S284R, M437I" - }, - "mutations": { - "E1": [ - "S325A" - ], - "E2": [ - "S381A" - ], - "E3": [ - "I21M", - "I33L" - ], - "nsP1": [ - "S458C", - "T459S", - "T466S" - ], - "nsP2": [ - "E145D", - "E639D" - ], - "nsP3": [ - "V173Q", - "S284A", - "P343H", - "R347S", - "E355D", - "T381S", - "I382L", - "A405E", - "G484V", - "S518C" - ], - "nsP4": [ - "S35A", - "E249D", - "S284R", - "M437I" - ], - "nuc": [ - "G464T", - "T554G", - "T830A", - "A1079C", - "C1367A", - "A1416T", - "A1419T", - "C1441G", - "C1935A", - "A1979C", - "A2084C", - "A2256C", - "T2411G", - "T3047G", - "T3176A", - "C3489A", - "T3491G", - "A3543C", - "G3566T", - "A4004T", - "T4064A", - "A4136C", - "G4157T", - "G4202T", - "A4454C", - "G4548C", - "T4549A", - "G4649C", - "T4694A", - "T4881G", - "A4973C", - "C5059A", - "G5060T", - "A5072C", - "A5078T", - "T5090G", - "A5096T", - "T5129A", - "A5172T", - "A5175T", - "G5186T", - "C5245A", - "C5267A", - "G5482T", - "A5583T", - "G5777T", - "T5805G", - "T6182G", - "T6197G", - "T6446A", - "A6449C", - "G6488T", - "A6552C", - "A6659T", - "G6695C", - "T6749A", - "T6911A", - "G7013T", - "G7049T", - "A7055T", - "C7151A", - "A7579C", - "A7783T", - "C7910A", - "G8020T", - "C8026A", - "G8287T", - "A8314T", - "T8449G", - "A8483C", - "A8533T", - "G8626C", - "C8825A", - "A8992C", - "T9370G", - "C9404A", - "A9592C", - "T9634A", - "T9704G", - "A9742C", - "C9764A", - "C9826G", - "A9862C", - "C9958G", - "C9973G", - "G10258C", - "G10411T", - "A10429T", - "C10543A", - "C10762A", - "C10837A", - "C10849A", - "T10973G", - "C11074A", - "C11173A", - "A11332C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: M39L; CP: F15L, D55S, K65R, Q78K, K82R, K85T, S92G, T93P, G94S, P98Q, S103N, T104P, S183N, E260D, K266R; E1: A28S, T65A, S98A, V137I, E139G, N216S, H262L, G298D, E300G, F343I, L373T, L374I, H390R, T411S, V419A; E2: M16T, M70V, H71Q, V119I, T120I, S140N, A155T, T177A, Q187K, L197S, Y238F, D249N, L287F, D301N, N347D, S395T, T420A; E3: T18A, V38L, R56K; nsP1: I227V, G409E, R465K, K476R, P478A, T483S; nsP2: M224L, S346C, D352N, P439S, T443S, Q565H, S567A, I597V, H617Q, R619P, V637I, N642H, S661H, V681T, I720V; nsP3: A61G, A62V, N74S, I96L, N117S, A174V, T227N, T229A, S263N, L268M, S346R, E350Q, P353L, A354P, A367S, T368I, L374F, E377A, A378V, E379T, I384V, L395P, H404Y, V421I, F466T, A482T, A516T, V533E, K534R; nsP4: V25I, L54V, Q58P, K89R, T90S, N111D, V121I, A126T, E238D, C365W, A537T, T583A" - }, - "mutations": { - "6k": [ - "M39L" - ], - "CP": [ - "F15L", - "D55S", - "K65R", - "Q78K", - "K82R", - "K85T", - "S92G", - "T93P", - "G94S", - "P98Q", - "S103N", - "T104P", - "S183N", - "E260D", - "K266R" - ], - "E1": [ - "A28S", - "T65A", - "S98A", - "V137I", - "E139G", - "N216S", - "H262L", - "G298D", - "E300G", - "F343I", - "L373T", - "L374I", - "H390R", - "T411S", - "V419A" - ], - "E2": [ - "M16T", - "M70V", - "H71Q", - "V119I", - "T120I", - "S140N", - "A155T", - "T177A", - "Q187K", - "L197S", - "Y238F", - "D249N", - "L287F", - "D301N", - "N347D", - "S395T", - "T420A" - ], - "E3": [ - "T18A", - "V38L", - "R56K" - ], - "nsP1": [ - "I227V", - "G409E", - "R465K", - "K476R", - "P478A", - "T483S" - ], - "nsP2": [ - "M224L", - "S346C", - "D352N", - "P439S", - "T443S", - "Q565H", - "S567A", - "I597V", - "H617Q", - "R619P", - "V637I", - "N642H", - "S661H", - "V681T", - "I720V" - ], - "nsP3": [ - "A61G", - "A62V", - "N74S", - "I96L", - "N117S", - "A174V", - "T227N", - "T229A", - "S263N", - "L268M", - "S346R", - "E350Q", - "P353L", - "A354P", - "A367S", - "T368I", - "L374F", - "E377A", - "A378V", - "E379T", - "I384V", - "L395P", - "H404Y", - "V421I", - "F466T", - "A482T", - "A516T", - "V533E", - "K534R" - ], - "nsP4": [ - "V25I", - "L54V", - "Q58P", - "K89R", - "T90S", - "N111D", - "V121I", - "A126T", - "E238D", - "C365W", - "A537T", - "T583A" - ], - "nuc": [ - "C29A", - "T44C", - "A53G", - "G98A", - "C140T", - "T149C", - "T185A", - "A200G", - "A308G", - "T332C", - "G341A", - "G344C", - "A395T", - "G398A", - "C399T", - "C401G", - "C470T", - "T488C", - "C503T", - "C521A", - "A555C", - "C575T", - "T590C", - "T593C", - "T599C", - "G608C", - "C611G", - "A623G", - "A689G", - "A713G", - "G719A", - "A723G", - "A729C", - "G731A", - "T740C", - "G752T", - "T755C", - "T776A", - "C782T", - "C1037T", - "G1040T", - "G1052A", - "A1055C", - "A1067G", - "A1109T", - "G1118A", - "C1139T", - "A1196G", - "A1199G", - "A1202G", - "G1205C", - "G1223A", - "G1270A", - "A1310G", - "T1313C", - "T1334A", - "A1343G", - "C1361T", - "C1403A", - "C1407T", - "G1438A", - "A1463G", - "A1471G", - "C1476G", - "A1481C", - "T1484G", - "A1491T", - "T1493C", - "A1508T", - "A1520G", - "G1538A", - "C1568T", - "A1571G", - "T1586C", - "C1622T", - "C1625T", - "G1640A", - "C1646A", - "C1679T", - "C1691T", - "C1697G", - "C1715A", - "G1727T", - "C1742A", - "G1751T", - "A1772C", - "A1778G", - "A1790G", - "G1838A", - "T1847C", - "C1850T", - "A1853G", - "T1865A", - "A1901G", - "A1934G", - "T1973C", - "A1982G", - "C1985A", - "A2000G", - "A2012G", - "C2018T", - "C2027T", - "A2039G", - "C2045T", - "G2063A", - "T2093A", - "A2108T", - "C2111A", - "G2156A", - "G2168A", - "A2174G", - "A2213T", - "C2231T", - "A2276G", - "A2319C", - "C2327T", - "T2462G", - "A2471C", - "G2489T", - "T2546C", - "C2549T", - "C2553A", - "G2555A", - "C2561T", - "A2567G", - "C2570T", - "T2579C", - "G2582A", - "T2588A", - "C2606T", - "C2612G", - "T2621C", - "A2685T", - "T2687C", - "T2696C", - "G2703A", - "G2717A", - "A2732C", - "G2741A", - "G2744A", - "A2753C", - "C2759T", - "G2780T", - "A2786G", - "C2789T", - "C2805A", - "G2813A", - "C2822A", - "C2837T", - "C2849T", - "C2883T", - "A2918G", - "A2927G", - "A2930T", - "G2954C", - "C2964T", - "A2976T", - "T2978G", - "C2984T", - "T3008C", - "G3023A", - "A3068G", - "A3095G", - "A3104G", - "G3110A", - "T3113G", - "G3131T", - "C3170T", - "C3179T", - "G3182T", - "A3185G", - "A3194G", - "A3203G", - "G3215C", - "C3218T", - "A3227C", - "A3239T", - "G3242C", - "T3248C", - "T3251A", - "T3260C", - "T3296C", - "A3299G", - "G3320T", - "G3344C", - "C3345T", - "T3347G", - "T3348G", - "C3359T", - "A3374G", - "C3401T", - "C3417T", - "T3425C", - "C3437T", - "A3438G", - "T3476C", - "C3500G", - "A3503T", - "G3505C", - "T3515C", - "G3536A", - "C3552T", - "G3558A", - "A3573C", - "C3575T", - "C3596T", - "C3626T", - "T3630C", - "C3631A", - "C3636T", - "T3641C", - "T3647C", - "G3662A", - "C3665T", - "T3683C", - "T3689C", - "G3690A", - "T3691C", - "A3698C", - "G3722A", - "G3740A", - "G3746A", - "G3758T", - "A3807G", - "A3809C", - "T3818A", - "A3824G", - "A3851G", - "A3860T", - "G3866A", - "G3872A", - "C3875T", - "A3899C", - "C3903T", - "G3938C", - "C3945A", - "G3947A", - "T3965C", - "G3977A", - "T3983C", - "T3987C", - "C3992A", - "A4028G", - "T4034C", - "C4040T", - "G4052A", - "C4053A", - "C4106T", - "C4121T", - "G4127A", - "T4142A", - "C4163T", - "A4190T", - "T4205A", - "C4213G", - "C4216T", - "C4226A", - "C4244T", - "A4252G", - "A4265G", - "T4310G", - "A4313G", - "A4317C", - "C4319A", - "C4334T", - "G4355A", - "A4364G", - "T4373C", - "C4376G", - "A4381G", - "C4382T", - "A4385G", - "T4425C", - "C4430T", - "A4442T", - "A4461C", - "G4469A", - "G4481A", - "T4484A", - "C4485T", - "A4493G", - "A4499T", - "T4502G", - "G4505A", - "A4508G", - "C4541T", - "C4552T", - "A4556G", - "A4565G", - "C4569T", - "A4631C", - "T4646C", - "T4664C", - "G4670A", - "C4688G", - "C4711A", - "A4716G", - "T4748A", - "A4754T", - "A4757G", - "T4790G", - "A4814T", - "T4817A", - "G4819A", - "C4820T", - "G4826A", - "G4829C", - "T4833A", - "C4841T", - "A4853G", - "A4862C", - "C4880G", - "T4886C", - "A4889C", - "G4913A", - "T4916C", - "C4937T", - "G4946A", - "G4949A", - "G5015A", - "G5024A", - "C5069A", - "G5079C", - "C5089T", - "G5091C", - "G5130T", - "C5134T", - "A5141G", - "C5147G", - "C5150A", - "C5151T", - "A5161C", - "A5162G", - "C5164T", - "A5165T", - "G5166A", - "A5167C", - "A5181G", - "A5192G", - "G5210A", - "T5215C", - "A5228G", - "C5241T", - "C5261T", - "A5273G", - "G5292A", - "G5309A", - "A5402G", - "C5405A", - "C5423T", - "T5427A", - "T5428C", - "A5438T", - "G5475A", - "G5495A", - "T5501A", - "C5504A", - "G5577A", - "A5600G", - "G5612T", - "T5629A", - "A5632G", - "G5651A", - "C5669T", - "A5759G", - "G5775A", - "G5780A", - "G5789A", - "T5804A", - "A5828G", - "C5862G", - "A5873G", - "A5875C", - "G5876T", - "C5888T", - "A5921G", - "A5934C", - "A5951T", - "T5960C", - "A5968G", - "C5971G", - "A5975G", - "A5978G", - "A5981G", - "T6008G", - "G6017A", - "A6023T", - "A6033G", - "G6056T", - "G6063A", - "G6065A", - "A6068G", - "G6078A", - "G6107A", - "T6110G", - "A6128G", - "C6161A", - "T6167A", - "T6174C", - "G6221A", - "C6245T", - "A6254C", - "G6260A", - "T6302A", - "C6305A", - "A6338G", - "G6353A", - "C6359A", - "C6380T", - "C6398T", - "T6410C", - "A6416C", - "A6428G", - "A6443G", - "T6455C", - "T6464C", - "T6470C", - "T6473C", - "A6476G", - "T6477C", - "T6500C", - "T6506C", - "T6524C", - "C6545G", - "A6573C", - "A6593C", - "T6596C", - "A6641G", - "C6644T", - "C6671T", - "C6677A", - "G6689A", - "A6707C", - "T6716C", - "G6719T", - "C6740T", - "G6746T", - "T6770C", - "T6788A", - "G6791A", - "T6797G", - "G6800A", - "G6803T", - "T6809A", - "G6821C", - "T6827C", - "G6872T", - "C6890T", - "G6899A", - "A6908T", - "A6938G", - "C6950G", - "C6989A", - "C7004T", - "A7019C", - "C7094G", - "C7100T", - "T7131C", - "C7139T", - "G7145A", - "T7158C", - "G7208A", - "G7232A", - "C7247T", - "A7256G", - "T7262G", - "G7286C", - "A7310C", - "G7311A", - "T7319C", - "A7343T", - "T7346G", - "C7376T", - "A7415G", - "A7430G", - "G7436A", - "C7439T", - "A7448C", - "A7449G", - "T7463G", - "G7472A", - "T7475C", - "C7573T", - "A7588T", - "T7604C", - "G7615C", - "T7624A", - "C7642T", - "G7681A", - "C7702T", - "G7724A", - "A7725G", - "G7732T", - "A7744G", - "T7750C", - "A7755G", - "G7768A", - "C7793A", - "T7798C", - "A7806G", - "G7807A", - "A7815C", - "A7816T", - "G7822A", - "A7835G", - "A7838C", - "G7841A", - "G7843T", - "C7854A", - "T7867C", - "G7869A", - "C7870T", - "A7871C", - "C7873G", - "A7942G", - "A7963C", - "A7966G", - "T7981A", - "C8045T", - "G8047A", - "G8059A", - "G8062A", - "C8074T", - "G8109A", - "C8110T", - "A8119C", - "C8125T", - "A8152G", - "T8188C", - "G8197A", - "G8206C", - "A8233C", - "A8263G", - "T8281A", - "A8305C", - "C8323T", - "C8329G", - "A8341C", - "A8357C", - "A8358G", - "A8389G", - "T8395C", - "C8416A", - "C8428T", - "C8437T", - "A8438G", - "A8440C", - "A8446G", - "G8498C", - "C8512A", - "C8548T", - "C8551A", - "G8553A", - "C8602A", - "T8610C", - "G8611A", - "A8656T", - "T8662C", - "C8702T", - "A8704G", - "C8734A", - "A8746G", - "C8752A", - "C8758A", - "A8771G", - "C8776A", - "C8779T", - "A8788G", - "T8794C", - "G8809C", - "A8821T", - "T8824A", - "T8839C", - "T8866A", - "C8872T", - "G8918A", - "C8922T", - "C8929G", - "A8935T", - "G8938A", - "G8950A", - "T8962G", - "G8982A", - "C8998T", - "A9004C", - "T9010C", - "G9013C", - "G9026A", - "C9073T", - "A9092G", - "G9097A", - "C9103A", - "C9109T", - "A9118T", - "C9122A", - "A9130C", - "C9151T", - "C9152T", - "T9153C", - "G9157C", - "A9187T", - "C9193T", - "A9205C", - "C9214T", - "A9215T", - "G9216C", - "C9217T", - "A9226C", - "A9232T", - "A9276T", - "T9283G", - "G9304A", - "G9308A", - "C9349G", - "A9352G", - "A9364T", - "A9373G", - "A9379T", - "G9424T", - "C9461T", - "G9464A", - "A9472G", - "C9481T", - "C9487T", - "C9493G", - "A9499G", - "T9508G", - "T9511G", - "G9565A", - "T9568C", - "G9574A", - "A9595C", - "C9601G", - "A9602G", - "T9610C", - "G9613C", - "C9622T", - "C9652T", - "T9682C", - "C9700G", - "A9709G", - "C9718T", - "A9745C", - "T9746A", - "T9757A", - "G9760A", - "G9769A", - "C9814T", - "G9820A", - "A9821G", - "C9838G", - "C9868T", - "T9871C", - "G9880A", - "T9892C", - "C9901T", - "C9913T", - "G9916A", - "T9922C", - "T9931G", - "A9947C", - "G10033A", - "G10036C", - "A10054G", - "G10069A", - "G10082T", - "C10090T", - "T10096C", - "C10102T", - "A10108G", - "A10132C", - "C10147T", - "A10159C", - "A10171T", - "C10177T", - "A10183G", - "A10193G", - "G10213A", - "A10228G", - "C10243T", - "A10270C", - "A10276G", - "C10282T", - "T10292G", - "G10318A", - "T10321C", - "C10339T", - "A10369G", - "A10384C", - "C10387T", - "T10393G", - "C10397T", - "G10409A", - "A10416G", - "A10453G", - "T10481C", - "T10486G", - "C10492A", - "A10495G", - "C10501G", - "C10513T", - "G10531A", - "G10549A", - "G10570A", - "G10585T", - "A10618G", - "C10637T", - "C10645A", - "A10647G", - "C10672G", - "A10678C", - "C10681T", - "G10732A", - "A10744G", - "A10765G", - "A10780G", - "A10785T", - "T10786C", - "C10795A", - "A10801G", - "A10846T", - "G10870A", - "A10885T", - "G10893A", - "A10899G", - "G10909A", - "G10915A", - "A10927T", - "C10930A", - "T10951C", - "G10957A", - "C10984T", - "T10993C", - "T10996C", - "A10999T", - "C11015T", - "A11026C", - "T11027A", - "A11047G", - "G11050C", - "A11053C", - "T11080C", - "C11101T", - "A11107T", - "T11116C", - "T11117A", - "T11118C", - "C11120A", - "C11122T", - "G11146A", - "A11169G", - "G11188A", - "T11194C", - "G11203A", - "C11215T", - "T11228C", - "A11231T", - "T11256C", - "T11269C", - "T11333A", - "A11334T", - "A11392C" - ] - } - }, - "name": "AF075255.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", - "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.24530141411809814, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1971.101095890411, - 1971.9986301369863 - ], - "value": 1971.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIIC" - }, - "year": { - "confidence": { - "1971": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: S53N; CP: Y8F, M13V, T75A, Q86K, S92R, T93N, A95G, N102S, S103G; E1: A11V, T65S, A226T, I261V, G298S, F343S, V347T, L373F, T389S, N442S; E2: V20I, S57P, K73T, I77V, R152H, K160R, A185S, N201D, A206P, I207V, S218N, A224T, V283I, H299S, Y306H, Q324S, Y328F, R407Q; nsP1: L128Q, T140S, Y143H, H146Q, R220Q, I247L, K269R, E403D, E473A, I482V, P484Q, V508I; nsP2: S54A, H109N, K223R, K338Q, K437R, L493M, E496D, Q497H, R505K, R543K, N544S, K560N, T615L, A624T, S654N, F659Y, S701N, V733I, V750A, K767R, V768T, R788H; nsP3: K26R, E51D, L79V, I156V, A178V, R328K, H343R, P344A, S347N, E348I, T349G, P353A, T356S, L358R, A378T, V385A, S388T, T389M, W390*, R392H, *393W, V406I, S423N, M440L, N450A, K457R, I459V, P469K, P479A, Q481*, A482V, V484I, S487N, R515S, C518R, Y553F, D554E; nsP4: V75I, R78K, I80M, Y101H, R112Q, S116N, M148L, S155T, A176V, V341I, C365S, L384M, S563H, T576S, S579A, T586S, R590K, A593S, A594S, H597Y" - }, - "mutations": { - "6k": [ - "S53N" - ], - "CP": [ - "Y8F", - "M13V", - "T75A", - "Q86K", - "S92R", - "T93N", - "A95G", - "N102S", - "S103G" - ], - "E1": [ - "A11V", - "T65S", - "A226T", - "I261V", - "G298S", - "F343S", - "V347T", - "L373F", - "T389S", - "N442S" - ], - "E2": [ - "V20I", - "S57P", - "K73T", - "I77V", - "R152H", - "K160R", - "A185S", - "N201D", - "A206P", - "I207V", - "S218N", - "A224T", - "V283I", - "H299S", - "Y306H", - "Q324S", - "Y328F", - "R407Q" - ], - "nsP1": [ - "L128Q", - "T140S", - "Y143H", - "H146Q", - "R220Q", - "I247L", - "K269R", - "E403D", - "E473A", - "I482V", - "P484Q", - "V508I" - ], - "nsP2": [ - "S54A", - "H109N", - "K223R", - "K338Q", - "K437R", - "L493M", - "E496D", - "Q497H", - "R505K", - "R543K", - "N544S", - "K560N", - "T615L", - "A624T", - "S654N", - "F659Y", - "S701N", - "V733I", - "V750A", - "K767R", - "V768T", - "R788H" - ], - "nsP3": [ - "K26R", - "E51D", - "L79V", - "I156V", - "A178V", - "R328K", - "H343R", - "P344A", - "S347N", - "E348I", - "T349G", - "P353A", - "T356S", - "L358R", - "A378T", - "V385A", - "S388T", - "T389M", - "W390*", - "R392H", - "*393W", - "V406I", - "S423N", - "M440L", - "N450A", - "K457R", - "I459V", - "P469K", - "P479A", - "Q481*", - "A482V", - "V484I", - "S487N", - "R515S", - "C518R", - "Y553F", - "D554E" - ], - "nsP4": [ - "V75I", - "R78K", - "I80M", - "Y101H", - "R112Q", - "S116N", - "M148L", - "S155T", - "A176V", - "V341I", - "C365S", - "L384M", - "S563H", - "T576S", - "S579A", - "T586S", - "R590K", - "A593S", - "A594S", - "H597Y" - ], - "nuc": [ - "G18T", - "A19T", - "G27T", - "T30A", - "A32T", - "A33C", - "A74G", - "C77T", - "A143C", - "C192T", - "G209A", - "C272T", - "T284C", - "C287A", - "G293C", - "A299G", - "G305A", - "T311C", - "T321C", - "C342T", - "G344A", - "G350A", - "C383T", - "A386G", - "C422T", - "T425C", - "T427A", - "G434A", - "T443C", - "C452T", - "A462T", - "T471C", - "A476G", - "C482A", - "C500T", - "C506T", - "A509C", - "A518C", - "T530C", - "C533T", - "T536C", - "T551A", - "A572T", - "T578C", - "G587C", - "C638T", - "C644A", - "T668C", - "A674T", - "A702C", - "G703A", - "C707T", - "C722T", - "C725A", - "G734A", - "A737G", - "T741C", - "T758C", - "A783C", - "G797A", - "A798C", - "A800G", - "T804C", - "A850G", - "C909A", - "G911A", - "A926C", - "G947A", - "T953C", - "C986T", - "A998G", - "A1004G", - "C1007T", - "C1031T", - "G1034T", - "G1040A", - "A1049G", - "T1056C", - "C1073T", - "T1091C", - "G1100A", - "T1151C", - "T1154C", - "A1160C", - "G1184A", - "T1187C", - "A1214G", - "C1220A", - "A1221C", - "A1229C", - "T1238C", - "G1241A", - "A1253C", - "C1266T", - "G1271A", - "A1277G", - "T1280C", - "C1281A", - "C1287T", - "G1289A", - "C1301T", - "T1304C", - "G1325A", - "T1328C", - "T1352C", - "C1355G", - "C1364T", - "T1373C", - "C1388T", - "C1403T", - "A1406G", - "A1409T", - "T1412C", - "T1418C", - "G1427A", - "C1430T", - "G1445A", - "T1455C", - "G1460C", - "A1462C", - "A1469G", - "A1481G", - "T1484C", - "A1488G", - "T1490C", - "C1495A", - "T1496G", - "A1499G", - "A1523G", - "A1526T", - "T1535C", - "G1547A", - "T1560C", - "G1566A", - "T1604G", - "T1607A", - "G1610A", - "A1613G", - "C1616T", - "C1619T", - "G1628A", - "A1637G", - "A1643C", - "A1649G", - "C1652T", - "C1667T", - "A1670T", - "A1676T", - "C1679A", - "A1682G", - "C1685A", - "T1688C", - "T1700C", - "C1712A", - "C1718G", - "C1721T", - "G1730A", - "G1733A", - "T1736C", - "C1745T", - "C1748T", - "A1760G", - "T1763C", - "C1779T", - "A1781G", - "G1784T", - "G1787A", - "C1796A", - "G1799C", - "T1805C", - "T1809G", - "A1811G", - "A1815C", - "G1817A", - "A1823G", - "C1826T", - "T1829C", - "C1832A", - "G1835C", - "T1841A", - "G1862T", - "C1880T", - "C1883A", - "C1886T", - "C1892T", - "A1898G", - "C1904T", - "T1907C", - "G1940A", - "C1955T", - "G1958A", - "C1961T", - "C1964T", - "T1967C", - "C1970T", - "C1974A", - "C1986T", - "G1988A", - "C1991T", - "C1994T", - "G2015A", - "A2021G", - "T2024C", - "A2036G", - "A2042G", - "G2069A", - "G2078A", - "C2084T", - "C2103T", - "G2105A", - "A2108G", - "G2114A", - "A2120G", - "A2138G", - "C2171A", - "G2186A", - "T2198C", - "G2201T", - "G2210A", - "A2216G", - "A2219G", - "C2222T", - "A2237C", - "A2240G", - "C2252G", - "T2261C", - "C2262T", - "C2306T", - "C2309T", - "A2317G", - "C2328T", - "G2339A", - "A2342G", - "T2354C", - "C2361T", - "C2364T", - "T2369C", - "A2372G", - "G2378A", - "A2384T", - "A2393G", - "G2396A", - "T2402C", - "T2405C", - "T2414C", - "T2423C", - "A2426C", - "C2429G", - "A2436C", - "A2438C", - "T2442C", - "T2456C", - "G2468A", - "A2477G", - "C2480T", - "A2483T", - "C2504T", - "C2507T", - "C2519T", - "T2531C", - "T2588C", - "T2594A", - "A2600G", - "C2603A", - "G2609A", - "G2615A", - "T2624C", - "A2639C", - "T2651A", - "T2660G", - "A2661C", - "T2666A", - "T2672C", - "A2690G", - "A2699G", - "T2705C", - "G2729A", - "C2745T", - "A2762G", - "T2768C", - "A2771G", - "C2789A", - "G2795A", - "A2798C", - "T2819C", - "G2834A", - "T2846C", - "C2849A", - "C2858A", - "T2891A", - "C2894T", - "G2897T", - "G2906A", - "G2912A", - "T2921G", - "A2927T", - "C2933T", - "A2936G", - "T2942C", - "A2945G", - "A2959G", - "G2960A", - "C2966A", - "T2972C", - "T2981C", - "C2987T", - "A2990G", - "A2993G", - "A3002G", - "T3029C", - "T3030C", - "G3035A", - "C3041A", - "T3044C", - "G3050A", - "C3056G", - "G3062A", - "T3071A", - "T3086C", - "G3098A", - "T3101C", - "C3105T", - "C3119A", - "T3122C", - "T3126A", - "A3137C", - "G3140T", - "G3149A", - "T3152C", - "T3158C", - "G3163A", - "A3176G", - "A3191C", - "T3209C", - "T3221C", - "A3224G", - "C3225T", - "A3227G", - "C3230T", - "C3236T", - "C3243T", - "A3254G", - "A3263C", - "G3269A", - "A3275C", - "G3277A", - "A3280G", - "C3284T", - "T3302A", - "G3320A", - "A3329T", - "G3341T", - "A3353G", - "A3362G", - "T3368G", - "T3386C", - "A3389T", - "G3398T", - "C3407T", - "C3410A", - "G3413A", - "T3416G", - "T3422C", - "G3449A", - "G3479A", - "A3492C", - "C3493T", - "A3503G", - "T3506G", - "G3519A", - "G3539A", - "C3542A", - "C3557A", - "A3563C", - "T3566C", - "A3569G", - "A3581C", - "T3590C", - "T3593C", - "G3602A", - "G3610A", - "T3614G", - "C3623T", - "T3625A", - "C3635A", - "A3644C", - "C3650T", - "T3671C", - "T3677C", - "A3693C", - "G3695A", - "A3698G", - "T3716C", - "C3734T", - "T3737C", - "G3751A", - "G3770A", - "T3773C", - "A3782T", - "T3791C", - "A3794G", - "C3797T", - "T3800C", - "C3806T", - "C3812T", - "C3827T", - "G3830A", - "T3836C", - "G3846A", - "G3848A", - "A3857C", - "T3869C", - "C3879A", - "T3887C", - "T3898C", - "A3899G", - "A3908G", - "A3917G", - "G3920C", - "A3923G", - "T3926C", - "T3941C", - "A3949G", - "G3950A", - "G3951A", - "T3952C", - "C3959G", - "T3968C", - "C3971T", - "A3974G", - "T3975C", - "C3980T", - "C3986A", - "C3992T", - "C4007G", - "G4012A", - "A4013T", - "T4014C", - "A4025C", - "C4031T", - "T4046C", - "G4052C", - "T4070C", - "A4073G", - "C4088T", - "T4094C", - "G4097A", - "T4100A", - "A4108G", - "A4115G", - "A4118G", - "C4130T", - "A4148G", - "C4154T", - "T4157C", - "A4160G", - "T4169C", - "G4172A", - "G4184C", - "C4187G", - "A4193G", - "C4196T", - "A4199G", - "A4208G", - "T4229A", - "A4235T", - "C4247T", - "G4259A", - "C4266G", - "G4268A", - "A4271G", - "G4274T", - "A4280G", - "G4283A", - "C4292T", - "C4316A", - "T4328C", - "T4331C", - "A4335C", - "T4340G", - "G4346T", - "G4352A", - "G4355C", - "C4356T", - "T4361A", - "A4370C", - "C4389A", - "C4394T", - "A4403G", - "A4406G", - "T4409C", - "C4412T", - "T4413C", - "G4418T", - "T4424G", - "A4436G", - "A4463G", - "T4484C", - "G4487A", - "T4496C", - "A4497G", - "C4514G", - "C4529T", - "G4550A", - "A4559C", - "T4562C", - "C4564T", - "A4565T", - "G4568A", - "A4577G", - "T4583C", - "G4586A", - "C4595A", - "G4598A", - "A4601G", - "C4607T", - "T4613G", - "C4616T", - "C4625G", - "C4628T", - "A4634G", - "C4637G", - "C4640T", - "G4673A", - "A4691G", - "T4712C", - "T4715G", - "C4718T", - "T4724C", - "G4730A", - "T4745C", - "T4749C", - "C4760T", - "C4766T", - "T4772C", - "A4773C", - "T4799C", - "G4805C", - "C4808T", - "A4823C", - "T4824C", - "C4838T", - "C4841A", - "T4844C", - "T4847A", - "A4859G", - "G4877A", - "C4880A", - "A4889G", - "A4892G", - "T4898A", - "A4910G", - "C4925T", - "T4943G", - "A4958G", - "C4961T", - "T4964G", - "C4973T", - "T4994C", - "T5000C", - "T5009C", - "C5012T", - "G5014A", - "C5021T", - "A5059G", - "C5061G", - "G5063T", - "G5071A", - "G5073A", - "A5074T", - "G5075C", - "A5076G", - "C5077G", - "G5081A", - "C5088G", - "G5090A", - "G5093A", - "C5098G", - "A5099T", - "T5104G", - "T5105A", - "A5129G", - "A5135T", - "T5144A", - "C5147A", - "C5150T", - "G5163A", - "A5168G", - "T5174G", - "T5175C", - "A5177G", - "T5185C", - "G5194C", - "C5195T", - "C5197T", - "G5201A", - "G5206A", - "A5207T", - "A5209G", - "G5222A", - "C5234T", - "G5247A", - "A5267G", - "C5270A", - "A5276G", - "C5297T", - "G5299A", - "A5318G", - "A5349T", - "A5357G", - "A5379G", - "A5380C", - "C5384T", - "G5387T", - "A5390T", - "A5399C", - "A5401G", - "A5406G", - "A5414C", - "T5417A", - "T5426C", - "T5429C", - "C5436A", - "C5437A", - "T5444C", - "A5450G", - "C5466G", - "C5472T", - "C5476T", - "G5481A", - "C5489T", - "G5491A", - "A5498G", - "T5507C", - "C5574T", - "G5575C", - "A5576G", - "G5579A", - "T5582A", - "T5583C", - "T5594C", - "C5597T", - "C5603A", - "T5606C", - "C5607T", - "T5615C", - "T5624G", - "A5630G", - "A5633G", - "A5634C", - "G5636A", - "T5639C", - "C5663T", - "A5675G", - "A5689T", - "T5690C", - "T5693G", - "C5708A", - "T5711C", - "C5717A", - "T5720C", - "C5723A", - "T5735C", - "A5738G", - "A5741G", - "A5744G", - "G5765A", - "T5766C", - "T5771A", - "G5783A", - "A5786G", - "T5796C", - "T5843C", - "A5858G", - "A5873C", - "G5897A", - "A5906G", - "G5909A", - "A5924T", - "G5925A", - "G5927A", - "C5933T", - "G5935A", - "A5939G", - "T5942G", - "C5948T", - "G5966T", - "A5978C", - "T5984C", - "T5990C", - "A5999G", - "T6003C", - "C6005T", - "C6014T", - "A6023G", - "T6029C", - "C6035T", - "G6037A", - "G6041A", - "A6047G", - "G6049A", - "C6050T", - "T6053G", - "A6062G", - "T6074C", - "C6077T", - "G6080A", - "G6083A", - "C6084T", - "G6086A", - "G6089A", - "A6092G", - "A6104T", - "T6110C", - "G6113A", - "G6131A", - "C6134T", - "C6140T", - "C6143T", - "A6144C", - "C6161T", - "T6165A", - "C6179T", - "T6188C", - "T6191C", - "C6194T", - "A6200G", - "T6204C", - "G6206T", - "C6212T", - "A6218G", - "A6224G", - "C6227T", - "C6229T", - "T6233C", - "T6234C", - "G6236T", - "C6242T", - "T6269C", - "A6272C", - "C6278T", - "C6282T", - "G6287A", - "T6290C", - "G6296A", - "A6308C", - "T6323C", - "C6326T", - "A6329G", - "A6336C", - "A6341G", - "A6347G", - "G6350T", - "C6365T", - "T6371C", - "G6386A", - "G6389A", - "G6395A", - "A6407G", - "C6434T", - "T6437C", - "C6449T", - "G6452A", - "T6461G", - "G6494T", - "C6497A", - "C6501T", - "G6512A", - "T6515G", - "T6521C", - "G6536A", - "C6545T", - "T6566C", - "G6575A", - "G6581A", - "T6590G", - "A6599T", - "A6602G", - "G6614A", - "T6620G", - "C6632T", - "C6635T", - "C6662A", - "T6665C", - "G6723A", - "T6728C", - "C6731T", - "G6734A", - "T6737C", - "C6758T", - "C6764T", - "T6779C", - "T6788C", - "T6795A", - "C6801T", - "C6833T", - "G6836A", - "G6845A", - "C6852A", - "T6869C", - "T6879C", - "C6906T", - "A6914G", - "T6920A", - "T6926G", - "C6944T", - "A6947C", - "A6968G", - "C7001T", - "T7010C", - "T7016C", - "T7025A", - "C7028T", - "C7031T", - "C7061T", - "T7067G", - "C7070T", - "C7076G", - "A7085G", - "T7097C", - "C7103T", - "C7106T", - "A7109C", - "A7115T", - "T7118C", - "G7124T", - "G7133A", - "C7139A", - "A7151G", - "G7154A", - "G7169A", - "G7175A", - "A7181T", - "G7190A", - "C7196A", - "G7205A", - "T7217C", - "A7220T", - "G7223A", - "T7235C", - "C7238T", - "T7268G", - "T7271C", - "T7274C", - "C7275T", - "A7283G", - "A7307T", - "C7328T", - "T7334C", - "C7340T", - "C7341A", - "T7347C", - "G7379A", - "C7382T", - "T7388C", - "T7389C", - "C7390A", - "T7391C", - "T7400C", - "G7406C", - "C7427G", - "A7428T", - "T7437G", - "A7451C", - "A7458T", - "C7469G", - "G7471A", - "G7479T", - "G7482T", - "G7484A", - "C7491T", - "T7508G", - "A7544G", - "A7558C", - "A7584T", - "A7597C", - "A7598G", - "T7603C", - "C7618T", - "T7627A", - "A7628C", - "A7630C", - "C7651G", - "T7657C", - "T7660C", - "T7682C", - "T7693A", - "G7699A", - "G7705A", - "G7717A", - "G7762T", - "A7771G", - "A7784G", - "A7804G", - "A7813C", - "C7817A", - "G7822C", - "G7834A", - "A7835C", - "T7837C", - "C7839A", - "C7845G", - "C7846T", - "G7855C", - "G7858A", - "G7864A", - "A7866G", - "A7868G", - "C7873T", - "G7876A", - "T7885G", - "C7888T", - "G7891A", - "A7894G", - "T7897A", - "A7900C", - "G7903A", - "A7906G", - "A7924G", - "T7925C", - "T7948C", - "A7975G", - "C7984T", - "A7987C", - "C7990A", - "A7993G", - "A8002G", - "C8011T", - "T8020C", - "A8026G", - "C8032A", - "C8044A", - "C8053T", - "G8062C", - "A8077G", - "G8089A", - "T8098C", - "C8101A", - "A8107G", - "G8116C", - "A8119G", - "T8128C", - "C8149A", - "T8158C", - "C8173T", - "G8182A", - "G8185A", - "A8191G", - "C8203T", - "G8206A", - "G8209A", - "G8224A", - "C8242T", - "T8257C", - "C8272T", - "T8281C", - "T8287C", - "A8290G", - "T8293C", - "A8305G", - "C8318T", - "A8326G", - "T8338C", - "A8344G", - "C8353T", - "A8356G", - "T8368G", - "T8377C", - "A8389T", - "A8392T", - "T8407C", - "T8419C", - "C8422T", - "G8425A", - "A8446C", - "C8452T", - "T8476G", - "T8488C", - "G8509T", - "C8515T", - "C8522T", - "T8533C", - "T8536C", - "G8539A", - "G8542A", - "C8545T", - "A8554G", - "G8560A", - "G8569A", - "G8584A", - "T8596C", - "A8599G", - "G8605A", - "G8621A", - "T8635G", - "T8638C", - "C8641T", - "T8653C", - "C8659T", - "G8665A", - "C8695T", - "C8699A", - "G8716A", - "T8725A", - "C8726T", - "G8728A", - "C8731T", - "T8732C", - "C8734T", - "T8744C", - "G8764A", - "A8781C", - "C8785A", - "A8792G", - "G8797C", - "T8798C", - "A8800G", - "T8803C", - "A8806G", - "T8824C", - "C8830G", - "C8836T", - "T8848C", - "T8851C", - "C8860T", - "C8863A", - "A8878C", - "C8890T", - "T8926C", - "A8935G", - "T8956C", - "A8959G", - "C8992T", - "A8995G", - "G9007A", - "G9018A", - "T9025C", - "T9034C", - "C9037A", - "G9040A", - "A9041C", - "A9042G", - "T9052G", - "C9079T", - "G9085A", - "C9088T", - "C9103T", - "G9112A", - "T9115C", - "G9116T", - "C9121T", - "G9127A", - "T9133A", - "T9136G", - "A9145G", - "T9148C", - "G9157A", - "A9164G", - "C9166T", - "C9175T", - "G9179C", - "A9181C", - "A9182G", - "C9196T", - "C9199T", - "G9202A", - "G9216A", - "G9233A", - "C9242A", - "C9250T", - "G9259A", - "T9262C", - "A9274G", - "A9289G", - "G9298A", - "G9304C", - "C9310T", - "T9331C", - "A9334G", - "C9340T", - "G9346T", - "T9361C", - "G9367A", - "G9370A", - "C9371T", - "T9403C", - "G9410A", - "T9412C", - "T9416C", - "T9422C", - "A9430G", - "A9431C", - "G9433T", - "C9442G", - "T9454C", - "C9457T", - "C9458T", - "A9459C", - "T9466C", - "T9479C", - "T9511C", - "A9512C", - "A9514T", - "A9523G", - "A9529G", - "C9533A", - "A9534G", - "A9535C", - "A9546T", - "G9550A", - "C9562T", - "T9577C", - "A9583T", - "G9586A", - "C9592T", - "A9598T", - "A9607T", - "G9613A", - "C9614T", - "G9625A", - "G9628A", - "T9637C", - "C9655G", - "G9664C", - "C9688G", - "A9691C", - "G9694A", - "T9703C", - "A9712C", - "C9721A", - "A9736G", - "C9748A", - "T9752C", - "T9757C", - "C9763T", - "G9766A", - "C9767T", - "G9775A", - "T9778C", - "G9783A", - "T9785C", - "G9787A", - "C9805A", - "T9808A", - "C9811T", - "G9817A", - "G9829A", - "A9847G", - "A9850T", - "C9851T", - "T9856C", - "G9898C", - "G9925A", - "T9934G", - "G9943A", - "C9946T", - "G9961T", - "G9990A", - "G10012A", - "C10015T", - "G10018A", - "G10030A", - "C10032T", - "C10051A", - "C10057T", - "A10061C", - "A10075G", - "C10093G", - "G10111A", - "A10114C", - "T10117C", - "G10126A", - "C10129T", - "G10135A", - "C10138T", - "C10141T", - "A10156G", - "A10162G", - "T10168C", - "T10180C", - "A10193T", - "G10195C", - "A10201G", - "C10204T", - "T10207A", - "T10216C", - "G10219A", - "C10222A", - "G10231A", - "C10234T", - "T10261C", - "A10270G", - "C10285T", - "C10288T", - "A10294G", - "T10312C", - "A10313C", - "A10324G", - "G10327T", - "A10330G", - "T10333A", - "C10342T", - "T10351C", - "C10354T", - "T10357C", - "C10358T", - "G10372A", - "A10378C", - "A10384G", - "C10396T", - "G10399A", - "C10402T", - "T10408A", - "T10411C", - "A10414G", - "G10423C", - "T10426C", - "T10429C", - "A10432T", - "T10447C", - "A10450G", - "T10459C", - "C10462T", - "C10468T", - "A10474T", - "A10480G", - "G10483A", - "T10486C", - "T10498G", - "T10504C", - "A10516G", - "T10519C", - "T10522C", - "A10528G", - "G10534C", - "C10540T", - "C10555T", - "T10561C", - "C10564T", - "C10567T", - "T10576C", - "T10582A", - "G10594A", - "G10597A", - "T10600C", - "A10603G", - "C10624T", - "C10627A", - "T10636C", - "C10642T", - "C10645T", - "G10651T", - "T10654C", - "C10672A", - "C10675T", - "G10676A", - "C10687T", - "C10693A", - "A10696G", - "T10702G", - "G10714C", - "T10717A", - "T10720C", - "G10723A", - "G10726A", - "A10741G", - "A10744T", - "T10768C", - "T10771C", - "G10774A", - "A10781G", - "A10789C", - "T10792C", - "C10795T", - "T10804C", - "G10807A", - "A10825C", - "T10828A", - "A10831G", - "A10834T", - "T10861C", - "T10886C", - "G10892A", - "T10894C", - "T10906A", - "T10907C", - "T10912C", - "C10924T", - "A10927G", - "T10936C", - "C10954T", - "T10960C", - "G10963A", - "A10981G", - "A10987C", - "C11008A", - "C11014T", - "T11028C", - "C11029T", - "A11032T", - "T11035C", - "G11039A", - "T11040C", - "C11041A", - "A11044G", - "T11054C", - "C11077T", - "A11098G", - "A11119T", - "A11131G", - "T11134C", - "C11155T", - "C11161A", - "A11165T", - "C11182T", - "A11191G", - "A11197G", - "G11200A", - "G11218A", - "G11224A", - "A11230G", - "C11239T", - "T11263C", - "G11278A", - "A11284G", - "T11293C", - "T11296C", - "C11302T", - "C11306T", - "A11325G", - "T11326C", - "C11332T", - "A11340G", - "A11358G", - "T11359C", - "G11360A", - "A11363T", - "C11364A", - "T11386C", - "A11387G", - "T11388C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C3122T", - "C4070T", - "A5765T", - "T8962C", - "C10357T", - "T10648C", - "C10894T" - ] - } - }, - "name": "MH086245.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.2321585041180981, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1999.0013698630137, - 1999.898904109589 - ], - "value": 1999.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1999": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP4: Q278A" - }, - "mutations": { - "nsP4": [ - "Q278A" - ], - "nuc": [ - "C6534G", - "A6535C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "MH086248.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.2329557341180981, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1999.0013698630137, - 1999.898904109589 - ], - "value": 1999.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1999": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S356R" - }, - "mutations": { - "nsP3": [ - "S356R" - ], - "nuc": [ - "C1160T", - "T1991C", - "T2507C", - "T5099A", - "C6294T", - "G6821A", - "C8743T", - "C9874T", - "C10177T", - "T10402C", - "C10912T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2204T", - "T10366C", - "T10951C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T2222A", - "C3821T", - "T4838C", - "A5162G", - "C5504G", - "A6593G", - "T6635C", - "T6680C", - "C8239T", - "C8483T", - "C9343T", - "G9529T", - "A10078G", - "C10894T" - ] - } - }, - "name": "MH086249.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.2354457741180981, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1999.0013698630137, - 1999.898904109589 - ], - "value": 1999.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1999": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: T17I; E2: T297A; nsP4: P104S, I256V" - }, - "mutations": { - "E1": [ - "T17I" - ], - "E2": [ - "T297A" - ], - "nsP4": [ - "P104S", - "I256V" - ], - "nuc": [ - "T1502C", - "T3008C", - "C5285T", - "C6012T", - "A6468G", - "A9452G", - "C10050T", - "A10066T", - "T10225C", - "C10576T" - ] - } - }, - "name": "MH086247.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.23508766411809812, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1998.0764491837826, - 1998.466908321152 - ], - "value": 1998.2418438621846 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1998": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1998" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000092", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999916853719 - }, - "entropy": 1.7389067658103177e-7, - "value": "Peru" - }, - "div": 0.23419823411809812, - "num_date": { - "confidence": [ - 1997.9092839691423, - 1998.2455809906016 - ], - "value": 1998.0575304289905 - }, - "region": { - "confidence": { - "LA,C": 0.9999999998734314 - }, - "entropy": 3.0620995133495414e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.01671399922559917, - "1998": 0.048908368848026046, - "1999": 0.9311939759446209 - }, - "entropy": 0.31265448516939925, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: H617Y; nsP3: V156I" - }, - "mutations": { - "nsP2": [ - "H617Y" - ], - "nsP3": [ - "V156I" - ], - "nuc": [ - "A1310G", - "C3498T", - "C3710T", - "A3743C", - "G4497A", - "A6581G", - "C7247T", - "G7286A", - "C10147T", - "A10207G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: A375T; nsP3: A190V; nsP4: N234D" - }, - "mutations": { - "E2": [ - "A375T" - ], - "nsP3": [ - "A190V" - ], - "nsP4": [ - "N234D" - ], - "nuc": [ - "A662G", - "C4600T", - "G6200A", - "C6380T", - "A6402G", - "T8011C", - "G8809A", - "G9686A", - "C9742T" - ] - } - }, - "name": "MH086246.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23562246411809812, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1997.9612667934766, - 1997.9986301369863 - ], - "value": 1997.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: L165F; E1: L120M; nsP4: A278Q" - }, - "mutations": { - "CP": [ - "L165F" - ], - "E1": [ - "L120M" - ], - "nsP4": [ - "A278Q" - ], - "nuc": [ - "C4409T", - "A4883G", - "A5162G", - "T6227C", - "G6534C", - "C6535A", - "C6788T", - "C7295T", - "C8054T", - "G8086A", - "T8794C", - "T10358A", - "C11134T", - "T11443A", - "C11444A" - ] - } - }, - "name": "MH086244.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23615741411809812, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1997.976719851019, - 1997.9986301369863 - ], - "value": 1997.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000093", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999983102721 - }, - "entropy": 3.8009781081265506e-8, - "value": "Peru" - }, - "div": 0.23482235411809813, - "num_date": { - "confidence": [ - 1997.8547528144202, - 1997.9325808878555 - ], - "value": 1997.8962025617905 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741671 - }, - "entropy": 6.637673345436086e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.9958517543763966, - "1999": 0.0039101424557666025 - }, - "entropy": 0.028638661826438417, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000091", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999982048264 - }, - "entropy": 4.024950011510929e-8, - "value": "Peru" - }, - "div": 0.23393224411809813, - "num_date": { - "confidence": [ - 1997.7928847211483, - 1997.893245656202 - ], - "value": 1997.8498454291764 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999730514 - }, - "entropy": 6.913984278589542e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.03865428874780004, - "1998": 0.013569433776695918, - "1999": 0.9456095764824454 - }, - "entropy": 0.25837032326637666, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000090", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999623718778 - }, - "entropy": 7.236332096094035e-7, - "value": "Peru" - }, - "div": 0.23295366411809812, - "num_date": { - "confidence": [ - 1997.712549420626, - 1997.832920213594 - ], - "value": 1997.7771975280525 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997586997 - }, - "entropy": 5.678387194707275e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.008214029977826205, - "1998": 0.0027832530774533778, - "1999": 0.9879031509016902 - }, - "entropy": 0.07945642161283142, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000089", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999938707264396 - }, - "entropy": 0.0000905341628686567, - "value": "Peru" - }, - "div": 0.23215589411809812, - "num_date": { - "confidence": [ - 1997.6063724879828, - 1997.7647070224548 - ], - "value": 1997.6886306552592 - }, - "region": { - "confidence": { - "LA,C": 0.9999999586546521 - }, - "entropy": 7.621186898362562e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.006944111196847906, - "1998": 0.002428441830016821, - "1999": 0.9866361007332057 - }, - "entropy": 0.0995473875092214, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000088", - "node_attrs": { - "country": { - "confidence": { - "Argentina": 0.023678071061943105, - "Colombia": 0.03524556348206144, - "Panama": 0.009980888336088196, - "Peru": 0.8773603440022856 - }, - "entropy": 0.6472240593421197, - "value": "Peru" - }, - "div": 0.13016504411809812, - "num_date": { - "confidence": [ - 1947.3101658774651, - 1951.2481621924455 - ], - "value": 1949.1397790035169 - }, - "region": { - "confidence": { - "LA,C": 0.9999257419286595 - }, - "entropy": 0.0008097697687239263, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.021511319159887417, - "1997": 0.022186970956457955, - "2000": 0.021445983350862216, - "2018": 0.021927348629104722 - }, - "entropy": 3.8709144116471306, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000087", - "node_attrs": { - "country": { - "confidence": { - "Argentina": 0.07260755279165235, - "Colombia": 0.07155646824382644, - "Panama": 0.02515593148223734, - "Peru": 0.6825950906372497 - }, - "entropy": 1.354828357508171, - "value": "Peru" - }, - "div": 0.08086134411809813, - "num_date": { - "confidence": [ - 1936.8831745689133, - 1941.985473621618 - ], - "value": 1939.2468975641411 - }, - "region": { - "confidence": { - "LA,C": 0.9997412822477825 - }, - "entropy": 0.002504888066560615, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.021511297370719495, - "1997": 0.02218706720488181, - "2000": 0.021446049682279138, - "2018": 0.021927387676660703 - }, - "entropy": 3.870914405858994, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000084", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.3445619921287702, - "Mexico": 0.0509830061209724, - "Panama": 0.09971135310156215, - "Peru": 0.16599577946113642 - }, - "entropy": 2.1878777004766214, - "value": "Colombia" - }, - "div": 0.0065727541180981295, - "num_date": { - "confidence": [ - 1865.6688913353942, - 1871.5826956285641 - ], - "value": 1869.0525402096694 - }, - "region": { - "confidence": { - "AUSNZ": 0.0024373968390882486, - "LA,C": 0.9971234844165154 - }, - "entropy": 0.020932477035854873, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.021511296950122223, - "1997": 0.022187067618667056, - "2000": 0.021446049871480244, - "2018": 0.02192738783689557 - }, - "entropy": 3.8709144057954683, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: N13H, I20S, V32A, A52V; CP: Y15F, A56V, R68K, E69D, A70T, P71S, K73Q, E74G, N75G, G77N, K84N, N85K, Q86L, G87V, H97P, Q101N, N104G, A108V, M151L, A163S, A164S, M257T, C272S; E1: S9N, A11V, T32V, I36V, T82S, V103I, M109T, D112E, L115V, A116T, E139G, T144A, I145V, T171S, R175K, L213V, F240Y, N360S, T397S, V419I; E2: K37R, D39E, S57P, L84V, D117E, Q152H, T194Q, T213S, F217Y, T221S, D224A, L231T, D249E, L260V, A262T, M275I, Y294F, H305A, S312T, E313N, A315V, T320S, F338Y, A340S, I380T, V382I, T386V, V394I; E3: A32S, V36H, V38I, K57G; nsP1: Y94F, A121E, S140T, Y143F, Y232F, H475P, K476V, E477D, P478R, S479P, E485D, A514S, T521A; nsP2: S39T, H75Q, K121R, T122V, D129E, T148S, K335R, E336D, T337S, R419K, I446M, T506E, K560H, A578T, H613Q, T615A, E616D, H619P, T642N, V643I, P644S, R654T, E656D, G669N, P684Q, K686R, I736V, L752K, Y764F, A768T; nsP3: I20V, G31S, K39R, F41Y, A61N, A62S, V96I, M150V, T174A, I227T, E332D, T333A, P334T, V336A, E337D, E350N, T352A, P353A, Q355P, A357T, L358R, T360A, V361A, D362A, A363G, T364R, R365E, R367*, T368E, P369H, E370G, P371T, I372T, I373V, E376V, M384V, G388D, P389A, T390P, D399E, G402R, P403S, P404A, S405Q, F407L, H415R, D422E, D428E, T429S, E431G, G432A, A433N, S434D, I435T, T436I, K438M, A439E, A440S, A442S, E443K, T444N, N445S, Y447C, S451G, V465I, N468T, T476A, T478R, S480L, R515P, A516L, P517S, A521S; nsP4: E43N, L47I, R78K, A90S, A126V, S176A, E242K, N275D, V286I, C365W, K422R, I443M, A537V, H550Q, T554A, P563S, S579A, I580V, T604S" - }, - "mutations": { - "6k": [ - "N13H", - "I20S", - "V32A", - "A52V" - ], - "CP": [ - "Y15F", - "A56V", - "R68K", - "E69D", - "A70T", - "P71S", - "K73Q", - "E74G", - "N75G", - "G77N", - "K84N", - "N85K", - "Q86L", - "G87V", - "H97P", - "Q101N", - "N104G", - "A108V", - "M151L", - "A163S", - "A164S", - "M257T", - "C272S" - ], - "E1": [ - "S9N", - "A11V", - "T32V", - "I36V", - "T82S", - "V103I", - "M109T", - "D112E", - "L115V", - "A116T", - "E139G", - "T144A", - "I145V", - "T171S", - "R175K", - "L213V", - "F240Y", - "N360S", - "T397S", - "V419I" - ], - "E2": [ - "K37R", - "D39E", - "S57P", - "L84V", - "D117E", - "Q152H", - "T194Q", - "T213S", - "F217Y", - "T221S", - "D224A", - "L231T", - "D249E", - "L260V", - "A262T", - "M275I", - "Y294F", - "H305A", - "S312T", - "E313N", - "A315V", - "T320S", - "F338Y", - "A340S", - "I380T", - "V382I", - "T386V", - "V394I" - ], - "E3": [ - "A32S", - "V36H", - "V38I", - "K57G" - ], - "nsP1": [ - "Y94F", - "A121E", - "S140T", - "Y143F", - "Y232F", - "H475P", - "K476V", - "E477D", - "P478R", - "S479P", - "E485D", - "A514S", - "T521A" - ], - "nsP2": [ - "S39T", - "H75Q", - "K121R", - "T122V", - "D129E", - "T148S", - "K335R", - "E336D", - "T337S", - "R419K", - "I446M", - "T506E", - "K560H", - "A578T", - "H613Q", - "T615A", - "E616D", - "H619P", - "T642N", - "V643I", - "P644S", - "R654T", - "E656D", - "G669N", - "P684Q", - "K686R", - "I736V", - "L752K", - "Y764F", - "A768T" - ], - "nsP3": [ - "I20V", - "G31S", - "K39R", - "F41Y", - "A61N", - "A62S", - "V96I", - "M150V", - "T174A", - "I227T", - "E332D", - "T333A", - "P334T", - "V336A", - "E337D", - "E350N", - "T352A", - "P353A", - "Q355P", - "A357T", - "L358R", - "T360A", - "V361A", - "D362A", - "A363G", - "T364R", - "R365E", - "R367*", - "T368E", - "P369H", - "E370G", - "P371T", - "I372T", - "I373V", - "E376V", - "M384V", - "G388D", - "P389A", - "T390P", - "D399E", - "G402R", - "P403S", - "P404A", - "S405Q", - "F407L", - "H415R", - "D422E", - "D428E", - "T429S", - "E431G", - "G432A", - "A433N", - "S434D", - "I435T", - "T436I", - "K438M", - "A439E", - "A440S", - "A442S", - "E443K", - "T444N", - "N445S", - "Y447C", - "S451G", - "V465I", - "N468T", - "T476A", - "T478R", - "S480L", - "R515P", - "A516L", - "P517S", - "A521S" - ], - "nsP4": [ - "E43N", - "L47I", - "R78K", - "A90S", - "A126V", - "S176A", - "E242K", - "N275D", - "V286I", - "C365W", - "K422R", - "I443M", - "A537V", - "H550Q", - "T554A", - "P563S", - "S579A", - "I580V", - "T604S" - ], - "nuc": [ - "C36G", - "C77T", - "T95A", - "G98A", - "T143G", - "C180T", - "T185A", - "C192T", - "C248T", - "G275A", - "T278C", - "T281C", - "G305A", - "T321C", - "A325T", - "C326T", - "T338C", - "A350G", - "C356T", - "G359A", - "A362G", - "C365T", - "C371T", - "C401T", - "A404G", - "C406A", - "C407A", - "G428C", - "G437A", - "T440G", - "C449T", - "C458T", - "G461A", - "T462A", - "G464C", - "C470A", - "A472T", - "A476G", - "G479T", - "T488A", - "T491G", - "C494T", - "A503G", - "A509G", - "A524G", - "T527C", - "A539G", - "G548A", - "A551G", - "C566T", - "C575A", - "C584T", - "T590C", - "T593C", - "T599C", - "A623C", - "C629T", - "T632G", - "C678T", - "A680G", - "T695G", - "A739T", - "C762T", - "A764G", - "G773A", - "C776A", - "A798C", - "G800A", - "G809C", - "T830C", - "A833T", - "T840C", - "C848T", - "A854G", - "A863T", - "T905C", - "A911G", - "C920T", - "C929T", - "C968T", - "A992G", - "A998G", - "A1004G", - "G1034A", - "T1043C", - "A1049G", - "T1052C", - "T1073A", - "A1079T", - "G1100A", - "A1112G", - "C1139A", - "G1148A", - "C1160T", - "A1166G", - "C1178A", - "T1187C", - "C1191T", - "A1202C", - "C1208A", - "G1211A", - "G1223A", - "A1229T", - "G1241A", - "C1266T", - "A1274T", - "A1277G", - "T1280C", - "A1283C", - "C1301T", - "T1310G", - "T1313C", - "G1319A", - "T1334A", - "C1346A", - "T1352C", - "C1361G", - "A1370G", - "G1373A", - "A1409T", - "C1412G", - "T1415C", - "A1421C", - "A1439G", - "A1445G", - "T1455C", - "A1463G", - "G1466A", - "A1468C", - "C1469T", - "A1470G", - "A1471T", - "A1475C", - "C1477G", - "T1479C", - "T1484C", - "A1499C", - "T1514C", - "A1523G", - "C1526G", - "G1541A", - "G1556A", - "T1560C", - "G1562C", - "C1563A", - "C1565G", - "T1580G", - "G1584T", - "T1589C", - "T1595A", - "C1604T", - "A1605G", - "T1607A", - "A1613G", - "C1616A", - "T1619C", - "C1622T", - "G1628A", - "T1632C", - "G1646A", - "A1649G", - "C1652A", - "C1655T", - "A1658C", - "G1661A", - "A1664C", - "T1667C", - "C1668A", - "T1674C", - "G1676C", - "C1697A", - "C1700A", - "G1703A", - "T1730C", - "T1742A", - "C1748G", - "G1757A", - "A1763G", - "T1764A", - "T1766A", - "T1784A", - "C1793A", - "G1799A", - "C1814G", - "A1820G", - "G1823T", - "C1824A", - "T1826A", - "T1829C", - "C1832A", - "G1835A", - "T1847C", - "A1856G", - "G1859A", - "G1862A", - "T1874A", - "A1877T", - "G1889A", - "T1913C", - "C1919A", - "A1937C", - "C1955T", - "C1956T", - "G1958A", - "A1973G", - "A1979T", - "G1985T", - "A2000G", - "A2011G", - "A2013G", - "C2014T", - "C2018G", - "C2027T", - "C2036A", - "A2042G", - "G2048A", - "C2057T", - "C2072T", - "C2075T", - "A2087G", - "C2090T", - "A2091T", - "T2093G", - "C2103T", - "C2111A", - "G2114A", - "G2117T", - "G2120C", - "T2126C", - "C2141T", - "G2144A", - "C2154T", - "A2159G", - "A2165C", - "G2168A", - "G2198T", - "T2204C", - "G2210T", - "A2213C", - "A2216G", - "A2219C", - "C2222G", - "C2231A", - "C2234T", - "T2237C", - "A2240G", - "C2252T", - "A2255G", - "T2261C", - "C2262T", - "G2267A", - "C2273T", - "C2276T", - "A2282G", - "C2291T", - "A2294C", - "A2297G", - "A2318G", - "A2345G", - "T2348A", - "G2366A", - "A2384G", - "T2387C", - "C2393T", - "C2394T", - "T2411C", - "T2420C", - "T2423C", - "A2426T", - "A2438G", - "G2441C", - "G2444A", - "C2453T", - "A2457C", - "T2462C", - "G2468A", - "C2480T", - "G2483T", - "G2495A", - "C2498T", - "C2507T", - "T2510C", - "C2520T", - "T2531C", - "T2534C", - "T2546A", - "G2552T", - "C2573A", - "C2585T", - "T2588C", - "A2591G", - "T2594A", - "T2600G", - "C2606A", - "C2615A", - "C2624T", - "C2645T", - "G2651A", - "A2653G", - "G2657T", - "A2658T", - "T2660C", - "G2663A", - "T2678A", - "C2684A", - "C2690T", - "G2699A", - "C2705T", - "T2708C", - "C2709T", - "C2711G", - "T2720A", - "A2729G", - "G2732A", - "A2738T", - "G2744A", - "T2756C", - "C2765A", - "G2780C", - "A2783G", - "T2792A", - "A2795G", - "C2799T", - "C2804G", - "C2813T", - "C2822A", - "T2846C", - "C2850T", - "A2870G", - "C2882G", - "C2886T", - "G2900A", - "C2904A", - "G2905A", - "C2909T", - "A2918G", - "A2924T", - "C2930G", - "A2936G", - "G2954C", - "T2966C", - "T2978C", - "C2981A", - "G2984A", - "A2987G", - "A2999G", - "T3008C", - "G3023A", - "T3030C", - "C3044T", - "T3047C", - "C3050G", - "C3053T", - "G3071T", - "C3074T", - "G3077T", - "C3086A", - "T3092A", - "T3093C", - "A3095T", - "G3098A", - "A3104G", - "G3107T", - "T3113C", - "C3119G", - "C3125T", - "A3137G", - "A3140G", - "T3149A", - "T3158C", - "A3165G", - "C3166A", - "C3170T", - "T3176C", - "A3185T", - "A3191C", - "A3194T", - "T3195C", - "C3200T", - "A3203G", - "G3215A", - "T3221C", - "A3224C", - "G3233A", - "C3236T", - "C3243T", - "A3245G", - "T3251C", - "T3267C", - "A3269C", - "T3281C", - "T3284C", - "C3287T", - "C3299A", - "T3308C", - "C3321T", - "A3327C", - "A3329T", - "C3339A", - "G3344A", - "C3347A", - "A3362T", - "G3368A", - "T3371G", - "A3374T", - "G3381A", - "A3389G", - "C3395A", - "T3398C", - "T3410C", - "C3413T", - "A3416T", - "C3444T", - "T3452G", - "A3459C", - "A3461T", - "A3462C", - "A3464C", - "T3470A", - "T3477C", - "A3479C", - "C3482G", - "C3485G", - "C3488A", - "A3492G", - "A3497C", - "C3500T", - "A3503C", - "A3505C", - "T3506C", - "T3518C", - "A3521C", - "C3524T", - "A3533G", - "G3536T", - "T3548G", - "G3554A", - "G3557A", - "C3560T", - "G3563T", - "C3574A", - "C3575T", - "G3576A", - "C3578T", - "C3579T", - "C3584T", - "T3593A", - "G3602A", - "C3605T", - "C3609A", - "G3610C", - "G3611A", - "G3617T", - "C3623T", - "A3629G", - "T3632G", - "G3638A", - "T3647C", - "C3650A", - "A3653C", - "G3654A", - "G3655A", - "C3665G", - "C3674T", - "A3680C", - "T3683C", - "T3686A", - "G3692A", - "G3695A", - "C3700A", - "T3704C", - "A3705C", - "A3706G", - "A3707C", - "T3716C", - "T3719C", - "A3731G", - "C3747T", - "T3749G", - "C3761T", - "A3767G", - "T3770C", - "T3773C", - "C3791A", - "C3797T", - "C3800T", - "C3803A", - "A3809T", - "T3818C", - "A3824G", - "A3828C", - "A3855G", - "A3857T", - "G3860T", - "C3878A", - "G3893A", - "A3899G", - "A3902T", - "C3903A", - "T3904A", - "A3908G", - "A3914C", - "G3923A", - "A3929C", - "A3940T", - "G3950A", - "G3951A", - "C3953A", - "T3956A", - "C3962T", - "T3968A", - "T3983C", - "T4001C", - "A4004C", - "C4010G", - "A4013G", - "C4019T", - "A4028C", - "G4049A", - "A4055C", - "T4064A", - "G4085A", - "A4089G", - "T4100C", - "A4109G", - "A4115G", - "G4122A", - "A4124T", - "G4127A", - "A4146C", - "A4147G", - "A4151G", - "T4153A", - "G4157C", - "G4175A", - "C4181A", - "A4190G", - "G4196T", - "C4197A", - "C4200T", - "G4212A", - "C4213A", - "A4214C", - "G4215T", - "C4244G", - "C4247T", - "A4262C", - "G4292A", - "G4301A", - "C4304T", - "C4307A", - "A4313G", - "G4317A", - "A4340T", - "G4346T", - "G4355T", - "C4364T", - "C4367A", - "G4379A", - "C4389A", - "A4391G", - "C4392T", - "A4403C", - "T4413C", - "G4418A", - "A4421G", - "T4424A", - "C4433A", - "T4436C", - "A4479G", - "T4484G", - "C4487G", - "G4490A", - "A4493G", - "A4496C", - "G4499A", - "T4502C", - "A4514G", - "G4517A", - "C4529T", - "A4532C", - "C4541T", - "T4544C", - "G4550A", - "A4551G", - "A4556G", - "G4577A", - "G4580A", - "G4586A", - "A4622C", - "A4631G", - "G4649T", - "G4655A", - "T4682C", - "C4700T", - "T4711C", - "T4712C", - "A4715T", - "G4718A", - "A4733G", - "A4736G", - "G4742A", - "T4745C", - "C4748T", - "A4754G", - "C4769T", - "T4772A", - "G4775A", - "C4790T", - "A4793G", - "G4796A", - "G4799A", - "A4802G", - "A4811C", - "T4817A", - "C4820T", - "T4844C", - "T4853C", - "A4856G", - "A4862G", - "A4865C", - "C4871T", - "C4872T", - "A4874G", - "A4883T", - "T4886C", - "A4889C", - "G4904T", - "C4907T", - "A4910T", - "T4916C", - "C4937A", - "T4940A", - "T4943A", - "C4955T", - "C4964G", - "C4967T", - "G4976T", - "G4985T", - "G4988A", - "C5000T", - "T5003A", - "C5010A", - "G5012A", - "C5021T", - "G5024A", - "A5027C", - "A5028G", - "C5031A", - "A5033T", - "G5036C", - "T5038C", - "A5039G", - "A5042C", - "G5079A", - "G5081T", - "A5085G", - "C5088G", - "T5090C", - "A5095C", - "G5100A", - "T5104G", - "A5109G", - "T5113C", - "A5116C", - "C5119G", - "C5122G", - "A5124G", - "G5125A", - "T5129C", - "A5130T", - "A5133G", - "C5134A", - "C5137A", - "T5138C", - "A5140G", - "C5142A", - "G5144A", - "T5146C", - "A5148G", - "A5158T", - "A5162G", - "A5181G", - "A5189C", - "A5192G", - "G5194A", - "C5196G", - "G5198A", - "A5199C", - "G5201A", - "C5228A", - "A5231G", - "G5235C", - "A5237C", - "C5238T", - "C5241G", - "T5243G", - "T5244C", - "C5245A", - "G5246A", - "A5249G", - "T5250C", - "A5258G", - "A5275G", - "G5294C", - "C5297G", - "T5301C", - "A5303C", - "T5312C", - "C5315A", - "A5316T", - "A5323G", - "G5324T", - "G5326C", - "A5327C", - "G5328A", - "C5329A", - "A5331G", - "G5332A", - "T5335C", - "C5338T", - "A5344T", - "C5347A", - "A5348G", - "G5349T", - "A5354C", - "G5355T", - "G5358A", - "G5360A", - "C5362A", - "T5363C", - "A5365G", - "A5371G", - "C5375T", - "A5378G", - "A5382G", - "C5384G", - "T5393C", - "G5399T", - "G5408T", - "T5411C", - "T5417G", - "G5424A", - "A5434C", - "C5435T", - "T5444C", - "C5456T", - "A5457G", - "A5459G", - "A5460C", - "C5464G", - "G5468A", - "C5470T", - "T5474C", - "G5575C", - "G5577T", - "C5578T", - "T5579G", - "C5580T", - "G5588A", - "G5592A", - "C5593G", - "A5597G", - "A5598C", - "A5600C", - "C5618T", - "G5621A", - "A5624G", - "C5627T", - "A5630C", - "T5633C", - "A5634C", - "G5636A", - "G5651A", - "A5672C", - "T5690C", - "C5708T", - "T5711C", - "C5717G", - "C5723T", - "G5732A", - "A5738G", - "A5759G", - "A5768G", - "T5781C", - "G5783A", - "G5798A", - "T5804C", - "A5828G", - "G5829A", - "A5831C", - "A5840G", - "C5841A", - "A5846G", - "C5847A", - "C5849A", - "A5855G", - "C5862T", - "C5870T", - "A5873G", - "A5883C", - "A5885G", - "C5888T", - "C5894T", - "A5901C", - "G5909T", - "G5912A", - "A5921G", - "G5935A", - "A5936G", - "C5943T", - "G5945A", - "A5948G", - "C5951A", - "C5952T", - "G5957T", - "T5960C", - "G5970T", - "A5978T", - "A5981G", - "C5999G", - "T6026A", - "C6036A", - "T6044C", - "A6047C", - "C6050T", - "G6056A", - "C6059T", - "A6062T", - "G6065C", - "C6071A", - "C6077T", - "C6079T", - "G6083T", - "A6089G", - "C6095T", - "T6104A", - "T6119C", - "T6125A", - "A6128T", - "T6164A", - "T6167A", - "A6176G", - "C6179T", - "T6182A", - "C6185G", - "A6200C", - "C6204T", - "C6209T", - "T6228G", - "T6233C", - "T6234C", - "G6236C", - "A6239G", - "G6254T", - "G6260T", - "G6269A", - "C6290T", - "G6296C", - "A6311G", - "C6326G", - "G6329T", - "C6347T", - "C6359T", - "T6362G", - "T6368C", - "C6380T", - "C6383T", - "G6386A", - "T6392C", - "G6395T", - "A6407G", - "T6410C", - "A6416G", - "G6419C", - "A6425G", - "G6426A", - "A6428G", - "C6431T", - "C6434T", - "C6437T", - "A6443G", - "T6446C", - "T6461C", - "T6464C", - "T6470A", - "A6485G", - "A6491G", - "G6524A", - "A6525G", - "A6533G", - "G6536A", - "G6558A", - "G6575A", - "C6578T", - "G6581C", - "A6584G", - "A6602G", - "T6605C", - "T6608C", - "C6615A", - "C6620T", - "A6626C", - "G6629A", - "G6632A", - "C6644A", - "G6650A", - "C6651T", - "A6653G", - "A6659G", - "G6662T", - "G6668A", - "C6671T", - "A6674G", - "C6677T", - "C6681A", - "T6692G", - "G6695C", - "T6699C", - "A6701G", - "C6710T", - "C6714T", - "T6716A", - "G6719T", - "C6725A", - "C6732T", - "G6734A", - "G6746T", - "A6752G", - "C6755T", - "T6764C", - "T6767A", - "T6779C", - "T6788A", - "G6791C", - "C6794T", - "T6797G", - "T6800G", - "C6801T", - "G6803A", - "A6806G", - "T6809C", - "T6815A", - "G6821C", - "G6836A", - "A6863G", - "T6869C", - "T6878C", - "A6881C", - "T6884G", - "G6905C", - "T6911C", - "T6920A", - "A6935C", - "A6938C", - "C6941T", - "C6950A", - "A6967G", - "A6968G", - "C6971T", - "C6989A", - "C7001G", - "G7013C", - "A7019C", - "C7022G", - "C7031G", - "C7037A", - "A7040C", - "G7049T", - "A7052G", - "A7055G", - "C7059A", - "G7061A", - "C7067A", - "A7073C", - "A7076T", - "A7082C", - "A7085G", - "A7094C", - "T7097C", - "T7103C", - "A7115G", - "C7118T", - "A7121G", - "G7124T", - "T7131C", - "A7133C", - "C7151T", - "T7158C", - "A7181C", - "T7184C", - "C7187A", - "A7220T", - "G7232A", - "C7241T", - "C7250A", - "C7259T", - "A7268G", - "C7274T", - "C7275T", - "A7277G", - "A7280G", - "G7283A", - "C7284T", - "G7286A", - "T7289C", - "A7310T", - "C7312T", - "A7313G", - "C7316T", - "A7338C", - "C7352A", - "G7358A", - "A7361C", - "A7362G", - "A7364C", - "C7367G", - "A7376G", - "C7389T", - "A7391C", - "C7395T", - "G7403A", - "A7406C", - "A7409C", - "A7412G", - "A7415G", - "A7416C", - "G7418A", - "C7427A", - "A7430G", - "A7433C", - "T7436G", - "T7437G", - "A7440G", - "A7445C", - "T7448C", - "T7463G", - "A7466C", - "T7469C", - "A7481G", - "A7484G", - "C7490T", - "A7512T", - "A7544G", - "T7550A", - "G7561A", - "C7567T", - "G7570T", - "C7573T", - "A7597C", - "A7605T", - "T7606C", - "G7615T", - "C7618T", - "C7628A", - "C7645A", - "T7657C", - "G7663A", - "G7678A", - "T7682C", - "C7687A", - "C7688A", - "C7690G", - "T7699C", - "C7703T", - "C7720G", - "G7723A", - "C7726T", - "C7728T", - "T7735C", - "G7741T", - "C7747G", - "A7756G", - "G7764A", - "G7768T", - "G7769A", - "C7772T", - "A7778C", - "A7782G", - "A7783T", - "A7784G", - "A7785G", - "G7790A", - "G7791A", - "A7792T", - "G7801A", - "G7807A", - "G7813T", - "C7816G", - "A7818T", - "G7819A", - "G7821T", - "G7822A", - "G7828A", - "G7840A", - "T7849A", - "A7851C", - "T7852C", - "G7855A", - "C7862A", - "G7864T", - "A7871G", - "A7872G", - "G7876A", - "G7882A", - "C7884T", - "C7888T", - "A7894G", - "A7900G", - "G7909A", - "C7912T", - "A7924G", - "A7930G", - "T7933A", - "T7951C", - "G7957T", - "C7960T", - "C7972T", - "C7975G", - "C7978T", - "T7981A", - "A7993T", - "G7996T", - "A8002G", - "C8005T", - "G8008A", - "G8011A", - "A8012C", - "A8023G", - "T8044G", - "C8045T", - "G8048T", - "G8051T", - "T8056C", - "G8062C", - "A8077G", - "A8095T", - "T8098C", - "A8104G", - "G8116C", - "T8122C", - "G8143A", - "A8152G", - "T8158C", - "C8182A", - "G8197C", - "G8200A", - "G8206A", - "A8212C", - "T8221C", - "G8224A", - "C8242T", - "A8245C", - "G8254T", - "T8257C", - "A8266G", - "G8269T", - "G8287T", - "A8290C", - "T8293A", - "A8305C", - "C8317A", - "C8329G", - "T8331C", - "T8353A", - "G8356C", - "G8359A", - "T8365C", - "T8375A", - "A8383G", - "A8389G", - "A8392G", - "C8401T", - "C8413T", - "A8431G", - "T8434C", - "A8446C", - "A8464G", - "G8480T", - "C8491T", - "G8492C", - "T8493A", - "G8498A", - "T8500A", - "C8506T", - "G8509T", - "C8512T", - "C8515T", - "T8518C", - "C8522T", - "G8527C", - "T8536A", - "G8542A", - "C8545T", - "C8548A", - "A8555G", - "A8556G", - "A8557C", - "A8563G", - "T8566C", - "T8590C", - "G8599A", - "C8632G", - "T8635C", - "G8638A", - "C8641T", - "T8653C", - "T8662A", - "G8671A", - "A8673G", - "C8680A", - "C8686T", - "C8689T", - "T8698A", - "T8704C", - "T8710C", - "C8713A", - "G8716T", - "C8725A", - "C8726T", - "T8732C", - "C8734A", - "A8746G", - "G8749A", - "C8776T", - "G8779A", - "T8785A", - "C8798T", - "A8800G", - "T8803C", - "A8812T", - "C8813G", - "C8815T", - "C8818T", - "A8821C", - "T8824A", - "C8830T", - "T8833C", - "T8839A", - "T8854C", - "G8884A", - "C8893A", - "C8896T", - "T8914A", - "A8923C", - "A8935C", - "T8944C", - "G8950A", - "A8953G", - "A8965G", - "C8968A", - "T8983A", - "C8989A", - "A8995G", - "A9004C", - "G9007A", - "G9013A", - "A9019C", - "A9028T", - "T9031C", - "C9043T", - "A9046G", - "T9055C", - "C9058G", - "C9070T", - "G9073A", - "C9076A", - "C9091T", - "G9097A", - "T9100G", - "C9112T", - "A9118T", - "C9121T", - "C9124T", - "A9130T", - "T9133C", - "T9139C", - "A9143C", - "C9144A", - "G9154A", - "G9166A", - "C9169T", - "C9172T", - "A9178C", - "G9190A", - "C9199T", - "A9200T", - "G9202T", - "A9205T", - "A9208G", - "G9211A", - "T9213A", - "A9224T", - "A9226C", - "A9234C", - "C9254A", - "T9255C", - "G9256A", - "T9283G", - "C9295T", - "C9310A", - "C9313T", - "A9316C", - "A9322C", - "A9334G", - "A9337C", - "T9341G", - "G9347A", - "A9349T", - "C9355A", - "T9370A", - "A9373G", - "A9376C", - "T9385C", - "G9388T", - "A9391C", - "C9397T", - "T9400G", - "A9409T", - "G9424T", - "T9430C", - "A9444T", - "T9454G", - "C9455A", - "C9457G", - "A9460G", - "T9469A", - "C9476G", - "A9477C", - "G9490A", - "T9497A", - "G9500A", - "A9502C", - "C9505T", - "C9507T", - "T9508A", - "T9511G", - "G9514A", - "T9520C", - "A9521T", - "C9523G", - "C9526T", - "A9532G", - "G9538T", - "G9544A", - "C9562T", - "G9568T", - "T9576A", - "T9577C", - "G9581T", - "A9583C", - "A9592T", - "C9598A", - "A9601T", - "T9610C", - "G9613A", - "T9634C", - "T9640C", - "C9643T", - "A9649G", - "C9652T", - "T9655C", - "C9667T", - "C9668T", - "G9670A", - "T9673C", - "G9676A", - "C9685T", - "C9688G", - "A9691G", - "T9694A", - "C9700G", - "T9702C", - "T9703A", - "G9707A", - "G9715A", - "A9719G", - "C9720T", - "C9721A", - "G9727T", - "C9739A", - "A9742G", - "G9743A", - "G9748C", - "A9754G", - "T9757C", - "T9760C", - "C9763T", - "G9766C", - "C9767T", - "C9772T", - "G9775A", - "C9778T", - "G9784T", - "C9791T", - "G9799A", - "G9805T", - "C9806T", - "T9808G", - "G9817A", - "T9823A", - "G9829A", - "C9841T", - "A9862C", - "A9869C", - "T9891G", - "A9895G", - "G9901A", - "T9907G", - "G9910A", - "C9913A", - "C9916A", - "T9917C", - "T9922A", - "A9925C", - "T9927C", - "G9928T", - "T9931C", - "C9935T", - "G9943A", - "C9946T", - "C9987T", - "C10000T", - "G10026A", - "C10032T", - "A10036G", - "C10048T", - "A10054T", - "A10066G", - "C10069T", - "C10072T", - "A10078T", - "T10084C", - "A10094G", - "C10095T", - "A10099T", - "G10105A", - "A10106G", - "C10108G", - "C10120A", - "T10130C", - "G10132T", - "C10141T", - "C10150T", - "A10156G", - "A10159C", - "A10192C", - "G10195T", - "A10201G", - "C10216T", - "T10222G", - "T10225C", - "G10231A", - "A10244T", - "A10246T", - "G10252A", - "G10258A", - "C10261T", - "T10273G", - "A10276G", - "C10291T", - "A10294G", - "C10300T", - "G10307A", - "G10309A", - "A10324G", - "T10326C", - "T10333A", - "C10336A", - "C10339T", - "C10343G", - "T10345C", - "G10346A", - "G10348T", - "T10357C", - "G10372A", - "C10375T", - "G10390A", - "C10399A", - "A10416G", - "T10426G", - "A10430G", - "A10433G", - "C10435G", - "A10453G", - "T10459C", - "C10462T", - "C10468T", - "C10477G", - "A10480G", - "T10481C", - "A10483G", - "A10489G", - "A10495T", - "T10498G", - "T10507C", - "A10511T", - "A10513G", - "C10516G", - "T10519C", - "C10523A", - "G10524A", - "C10525A", - "A10528G", - "G10549A", - "T10564C", - "T10570A", - "G10579A", - "A10582C", - "A10585C", - "A10603T", - "C10615T", - "A10618G", - "A10621G", - "C10624A", - "C10627T", - "A10633C", - "C10637G", - "G10639A", - "T10648C", - "C10651A", - "A10657T", - "A10678C", - "A10696G", - "T10702C", - "A10708C", - "T10717G", - "T10719A", - "G10723A", - "G10747A", - "A10750T", - "T10751C", - "G10753C", - "A10756G", - "C10762A", - "C10777T", - "A10789C", - "T10798C", - "C10801T", - "C10804T", - "T10810C", - "T10813C", - "T10832C", - "C10837T", - "C10846T", - "C10855T", - "T10856C", - "A10873C", - "C10886T", - "G10888A", - "A10891T", - "C10918T", - "G10951A", - "G10957A", - "T10960C", - "C10966G", - "G10981A", - "C10990T", - "T11008G", - "C11014A", - "C11015T", - "A11026C", - "C11036T", - "A11047G", - "G11050T", - "G11056T", - "C11059T", - "C11068T", - "C11074T", - "A11077C", - "A11079G", - "T11080C", - "C11083T", - "C11086T", - "A11113G", - "C11122T", - "T11134G", - "C11146T", - "C11155T", - "C11158T", - "A11167G", - "C11170T", - "A11189T", - "C11200T", - "G11206A", - "G11218T", - "C11237T", - "G11239A", - "C11254T", - "G11255A", - "T11263A", - "C11272A", - "T11273C", - "A11275T", - "G11281A", - "T11284C", - "C11302T", - "A11329G", - "C11331A", - "A11332T", - "A11340G", - "A11348T", - "A11356G", - "T11359A", - "T11365G", - "C11366T", - "A11379G", - "T11394A", - "T11395G", - "T11396A", - "C11412T", - "C11419T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P98Q, N101T, K135R; E2: S247A; nsP1: S124N, R469K; nsP2: A16G, D352E, F523Y, T647A, N669T, R788G; nsP3: N61S, N74S, T357M, *367C, E379D, E439G, S446A, F448A, A449S, L455M; nsP4: E593G, S596G" - }, - "mutations": { - "CP": [ - "P98Q", - "N101T", - "K135R" - ], - "E2": [ - "S247A" - ], - "nsP1": [ - "S124N", - "R469K" - ], - "nsP2": [ - "A16G", - "D352E", - "F523Y", - "T647A", - "N669T", - "R788G" - ], - "nsP3": [ - "N61S", - "N74S", - "T357M", - "*367C", - "E379D", - "E439G", - "S446A", - "F448A", - "A449S", - "L455M" - ], - "nsP4": [ - "E593G", - "S596G" - ], - "nuc": [ - "A31T", - "T32A", - "A74G", - "G170A", - "A188G", - "A299G", - "A320G", - "G329A", - "G415A", - "A470G", - "T479C", - "T554C", - "C689T", - "T755C", - "C822T", - "T1056C", - "A1265C", - "T1287C", - "A1292G", - "G1424A", - "G1450A", - "G1472A", - "C1625T", - "G1640A", - "C1696G", - "T1754C", - "C1775T", - "C1802T", - "T1811A", - "A1826G", - "C1916T", - "T2006C", - "A2036G", - "C2129T", - "C2132T", - "A2183G", - "C2249T", - "A2303C", - "A2324G", - "C2336T", - "T2339C", - "T2369C", - "A2489T", - "C2558T", - "A2594G", - "C2612T", - "T2657C", - "G2702A", - "T2705G", - "A2720G", - "T2723C", - "C2759T", - "G2906A", - "C2949T", - "G2960A", - "T2972C", - "A3002G", - "C3026T", - "G3041T", - "T3077C", - "T3101C", - "T3126C", - "T3155C", - "T3217A", - "T3248C", - "C3269T", - "C3272T", - "T3275C", - "C3359T", - "T3431C", - "T3491C", - "C3542T", - "A3581G", - "A3588G", - "G3590A", - "T3614G", - "T3623A", - "A3655C", - "C3671T", - "A3701G", - "T3756C", - "A3791G", - "T3797A", - "T3812C", - "C3833T", - "C3845T", - "G3920T", - "C3921T", - "G3938A", - "C3971T", - "A4011G", - "T4043C", - "C4088T", - "C4133T", - "G4142A", - "A4213G", - "C4226T", - "A4252G", - "A4256G", - "T4274C", - "A4280G", - "C4328T", - "C4334T", - "C4403T", - "G4427A", - "G4469A", - "A4553T", - "C4616T", - "T4628C", - "G4634A", - "T4637C", - "A4661G", - "G4673A", - "T4709A", - "C4749T", - "C4766T", - "T4790A", - "C4832T", - "C4838T", - "C4841T", - "A4859G", - "A4895G", - "T4898C", - "T4976C", - "C4979T", - "T4994A", - "G5015A", - "A5030G", - "C5101T", - "A5102G", - "A5114T", - "T5117A", - "A5132C", - "A5168T", - "A5177T", - "G5210A", - "C5213T", - "C5234T", - "A5273C", - "C5285T", - "C5319T", - "C5342T", - "A5347G", - "G5351T", - "T5367G", - "T5373G", - "T5374C", - "G5376T", - "T5385C", - "C5394A", - "T5603C", - "T5726C", - "T5736C", - "G5897A", - "A5904C", - "C5915T", - "G6032A", - "T6170C", - "T6215C", - "C6249A", - "A6266C", - "T6272C", - "A6314G", - "C6320T", - "T6351C", - "T6434A", - "T6437A", - "T6455C", - "A6482G", - "G6494A", - "T6497C", - "T6518C", - "T6521C", - "C6551T", - "G6617A", - "C6635T", - "T6687C", - "C6773T", - "C6782T", - "G6845T", - "C6890T", - "T6900C", - "T6945C", - "C6953T", - "T6965C", - "A6974G", - "C6998T", - "A7067G", - "T7091C", - "A7169G", - "A7187G", - "A7232C", - "C7238T", - "G7244A", - "T7262C", - "A7340G", - "G7376C", - "A7382T", - "T7385C", - "C7433T", - "C7442T", - "C7454T", - "C7472T", - "A7480G", - "A7488G", - "A7559G", - "C7597T", - "C7603T", - "G7672A", - "G7738A", - "T7768C", - "C7854A", - "A7863C", - "C7885T", - "T7925C", - "C7936T", - "A7942C", - "T7948C", - "A7965G", - "C8032T", - "C8041T", - "C8053T", - "A8125T", - "C8149T", - "A8179G", - "T8269C", - "T8281C", - "A8293G", - "C8326T", - "A8353G", - "C8455T", - "C8461T", - "C8623T", - "T8695C", - "A8713G", - "T8716C", - "G8719A", - "T8722C", - "C8743T", - "G8797A", - "A8824G", - "T8830A", - "T8860C", - "C8861T", - "A8884T", - "T8905C", - "A8917C", - "C8923T", - "T8956C", - "A8971G", - "C9067T", - "A9154C", - "G9157A", - "C9163T", - "C9290T", - "T9302G", - "C9391T", - "C9394T", - "A9406T", - "C9446T", - "A9571G", - "A9589G", - "A9607C", - "T9730C", - "C9781T", - "T9790C", - "C9862T", - "C9874T", - "T9892C", - "G10006A", - "C10112T", - "A10144T", - "C10159T", - "C10174T", - "C10186T", - "T10195C", - "A10399G", - "A10429C", - "T10492C", - "C10522T", - "T10555C", - "T10567C", - "T10576C", - "A10594T", - "T10600C", - "G10660A", - "C10687T", - "A10711G", - "G10714A", - "A10735G", - "A10744G", - "C10771T", - "T10828C", - "A10900G", - "C10912T", - "C10930A", - "C11026T", - "T11119C", - "G11149T", - "T11290A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: A186T" - }, - "mutations": { - "CP": [ - "A186T" - ], - "nuc": [ - "C278T", - "T657C", - "G2093A", - "A2696C", - "C3161T", - "C4502T", - "A5360G", - "G8117A", - "C8134T", - "G8605T" - ] - } - }, - "name": "KC344432.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.19148939588190186, - "host": { - "value": "Culex taeniopus" - }, - "num_date": { - "confidence": [ - 1961.7893029130873, - 1961.9986301369863 - ], - "value": 1961.9986301369863 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1961": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: A298T; E2: M181T; nsP2: P349S, G388S; nsP3: E428D" - }, - "mutations": { - "E1": [ - "A298T" - ], - "E2": [ - "M181T" - ], - "nsP2": [ - "P349S", - "G388S" - ], - "nsP3": [ - "E428D" - ], - "nuc": [ - "G1838A", - "C2694T", - "G2811A", - "C2883T", - "T3074C", - "C3191T", - "T3743C", - "A5315T", - "A6056G", - "T7792C", - "T9105C", - "T10213C", - "T10627C", - "G10892A", - "C11423T" - ] - } - }, - "name": "AF075252.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", - "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." - }, - "country": { - "confidence": { - "Panama": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Panama" - }, - "div": 0.19202533588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1962.0013698630137, - 1962.1753560979566 - ], - "value": 1962.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1962": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000095", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999903063603928 - }, - "entropy": 0.0001338858400797191, - "value": "Panama" - }, - "div": 0.19064746588190187, - "num_date": { - "confidence": [ - 1961.6271300473784, - 1961.8650062375293 - ], - "value": 1961.7588282550337 - }, - "region": { - "confidence": { - "LA,C": 0.9999999987713917 - }, - "entropy": 2.6944536614667552e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.0013820499001584885, - "1961": 0.4890854098917659, - "1962": 0.4838073586416732 - }, - "entropy": 0.9019857431387971, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: A21T, T70N, K110R, I136V; E1: I430V; E2: L197Q, A224S, N313H, R422K; E3: S17T; nsP2: N642S, A657S; nsP3: I65L, T334A, P335S, D337N, P355S, T357S, A361T, A366S, A476V, V527A; nsP4: Y597C", - "GRI Lineage Root": "B" - }, - "mutations": { - "CP": [ - "A21T", - "T70N", - "K110R", - "I136V" - ], - "E1": [ - "I430V" - ], - "E2": [ - "L197Q", - "A224S", - "N313H", - "R422K" - ], - "E3": [ - "S17T" - ], - "nsP2": [ - "N642S", - "A657S" - ], - "nsP3": [ - "I65L", - "T334A", - "P335S", - "D337N", - "P355S", - "T357S", - "A361T", - "A366S", - "A476V", - "V527A" - ], - "nsP4": [ - "Y597C" - ], - "nuc": [ - "T149C", - "T161C", - "A200G", - "T266C", - "T378C", - "C425T", - "C536T", - "T578C", - "T606C", - "C692T", - "G731A", - "T758C", - "A947G", - "T953C", - "T1028C", - "C1151T", - "C1172T", - "T1175C", - "T1238C", - "A1271G", - "T1340C", - "C1430T", - "G1451A", - "G1457A", - "C1476A", - "C1484A", - "T1493C", - "A1508G", - "T1581C", - "A1616G", - "A1637G", - "T1643G", - "C1691T", - "A1724G", - "T1733C", - "G1751A", - "A1766G", - "A1778G", - "C1781T", - "A1817G", - "A1835T", - "C1841T", - "T1865C", - "A1874G", - "C1883T", - "T1895C", - "C1928T", - "C1937T", - "C1949T", - "T1964C", - "T1976C", - "T1997C", - "G2021A", - "C2024T", - "C2039T", - "T2075G", - "G2096A", - "G2102T", - "C2147T", - "G2150A", - "C2165T", - "C2180T", - "C2192T", - "T2252A", - "A2258G", - "A2378G", - "C2405T", - "A2459C", - "T2486C", - "A2492G", - "G2555A", - "C2642T", - "A2654G", - "T2666C", - "T2681A", - "G2837T", - "G2876A", - "C2894G", - "A2945G", - "C2957G", - "T2963C", - "G3005A", - "G3062A", - "T3080C", - "C3113A", - "C3224T", - "A3239T", - "A3254C", - "G3266A", - "T3296C", - "A3377G", - "C3383T", - "C3417T", - "C3464T", - "C3497T", - "C3512T", - "C3530T", - "G3539A", - "A3574G", - "G3618T", - "T3641C", - "G3662A", - "A3668G", - "T3689C", - "T3713C", - "C3770A", - "A3803G", - "C3821T", - "A3878G", - "C3879A", - "A3896G", - "C3914T", - "C3947T", - "A3953G", - "T3965C", - "C3995T", - "T4007C", - "C4025T", - "C4037T", - "A4040G", - "A4112C", - "A4224C", - "T4229C", - "C4262T", - "T4310C", - "C4319T", - "T4349C", - "A4385G", - "C4416T", - "C4436A", - "T4439C", - "C4485T", - "A4580T", - "T4583C", - "C4622T", - "C4667T", - "G4754T", - "C4760T", - "T4778C", - "C4824T", - "C4865T", - "C4961T", - "G4991A", - "T5006C", - "A5031G", - "C5034T", - "G5040A", - "C5094T", - "A5100T", - "G5112A", - "G5127T", - "A5165G", - "T5180C", - "C5195T", - "A5225T", - "T5240A", - "C5303T", - "C5327T", - "C5429T", - "C5458T", - "C5576T", - "G5591A", - "T5611C", - "C5630T", - "C5645T", - "G5654A", - "T5657C", - "C5669T", - "T5699C", - "A5795G", - "T5942C", - "T5964C", - "C5996T", - "T6008C", - "G6080T", - "T6110G", - "C6144T", - "C6161T", - "T6260C", - "A6338G", - "A6449G", - "T6473C", - "T6500C", - "C6560T", - "G6587A", - "A6599C", - "C6680T", - "G6686A", - "T6704C", - "A6716G", - "T6719C", - "T6728C", - "T6758C", - "C6809A", - "A6992G", - "C6999T", - "C7004T", - "C7019T", - "C7028T", - "T7079C", - "T7124C", - "C7142T", - "G7205T", - "A7253T", - "C7328T", - "T7347C", - "A7352G", - "C7361T", - "C7373T", - "T7400C", - "C7445T", - "T7478C", - "A7492G", - "C7493T", - "T7585C", - "G7622A", - "T7627C", - "C7642T", - "C7661T", - "A7684G", - "C7770A", - "G7780A", - "T7813C", - "A7890G", - "T7912A", - "A7967G", - "T7996C", - "T8000C", - "G8065A", - "C8074T", - "C8128T", - "C8137T", - "T8308C", - "A8314G", - "C8323T", - "G8341A", - "T8362C", - "T8368C", - "G8389C", - "T8435A", - "T8449C", - "T8581C", - "C8594T", - "T8647C", - "G8728A", - "T8737A", - "C8770T", - "A8806G", - "C8827T", - "C8854A", - "T8869C", - "A8878T", - "C8926T", - "C8929T", - "C8935T", - "T8986C", - "C9004T", - "A9013T", - "C9016T", - "T9034C", - "G9040A", - "C9133A", - "T9153A", - "C9187T", - "C9217T", - "C9226T", - "G9233T", - "A9253T", - "T9277C", - "G9343A", - "G9367A", - "C9371T", - "C9427T", - "T9436C", - "T9445C", - "G9448A", - "C9493T", - "T9499C", - "A9500C", - "G9586A", - "G9616A", - "G9619A", - "C9634G", - "T9637C", - "T9784C", - "C9797T", - "A9802C", - "T9805C", - "G9828A", - "C9838T", - "T9871C", - "T9896C", - "C9925T", - "T9955C", - "C9958T", - "C10087T", - "C10102T", - "C10129T", - "A10228G", - "T10321C", - "T10348C", - "C10397T", - "C10402T", - "G10411T", - "C10465T", - "T10486C", - "T10540C", - "T10558C", - "A10570G", - "G10573A", - "T10588C", - "A10612G", - "C10630T", - "G10774T", - "T10786C", - "C10795T", - "T10816C", - "G10921A", - "C10948T", - "C10984T", - "G10996A", - "G11044A", - "C11095T", - "G11098A", - "G11176A", - "A11288G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S408N" - }, - "mutations": { - "nsP3": [ - "S408N" - ], - "nuc": [ - "G143A", - "C671T", - "C815T", - "C1304T", - "C2046T", - "A2168G", - "C2204T", - "G2330A", - "C2726T", - "C2849A", - "T3194C", - "A3782G", - "A3893G", - "T4145C", - "G5254A", - "G5381A", - "C5393T", - "T5399C", - "C5474T", - "T5963C", - "A6182G", - "C6410T", - "C6467T", - "C6605T", - "T6665C", - "C7193T", - "T7693C", - "C8026T", - "C8803T", - "G9208A", - "T9682C", - "G9853A", - "C10180T", - "A10333G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: G103V; E3: I38V; nsP1: I462M; nsP3: E169D", - "GRI Lineage Root": "B.3" - }, - "mutations": { - "CP": [ - "G103V" - ], - "E3": [ - "I38V" - ], - "nsP1": [ - "I462M" - ], - "nsP3": [ - "E169D" - ], - "nuc": [ - "T77C", - "T311C", - "T530C", - "C606T", - "C758T", - "G1013A", - "G1040A", - "C1119T", - "T1430G", - "T1691C", - "C1718A", - "A1742G", - "C1829T", - "T2414C", - "T2498C", - "G2522A", - "A2606T", - "T2624C", - "C2948G", - "C3080T", - "C3161T", - "A3164G", - "T3170C", - "C3317T", - "C3359T", - "T3416C", - "G3485A", - "C3506T", - "A3545G", - "T3857G", - "A3956G", - "C4007T", - "A4064T", - "A4127G", - "T4170C", - "G4469A", - "A4538T", - "T4595C", - "T4622C", - "T4646C", - "G4670A", - "T4709C", - "A4742G", - "C4778T", - "T4833C", - "C5006T", - "G5231A", - "G5321A", - "C5342T", - "G5447A", - "A5750T", - "T6144C", - "T6204C", - "C6212T", - "C6236T", - "T6329C", - "G6353A", - "T6827C", - "A6908G", - "T6971C", - "A7067T", - "C7100T", - "A7143C", - "C7184T", - "C7478T", - "T7660C", - "A7849G", - "A7855C", - "G7869T", - "G8104A", - "C8116T", - "C8149T", - "A8498G", - "T8512A", - "C8782T", - "C9151T", - "T9187C", - "G9238A", - "T9253C", - "C9391T", - "T9409A", - "T9424C", - "C9631T", - "C9868T", - "A9901G", - "A10210T", - "T10375C", - "T10471C", - "G10516T", - "C10519T", - "T10555C", - "T10561C", - "G10621A", - "C10672G", - "G10717T", - "T10906C", - "T11323C", - "C11364T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: R402C" - }, - "mutations": { - "nsP3": [ - "R402C" - ], - "nuc": [ - "C149T", - "T500C", - "T887C", - "T1572C", - "C1667T", - "T2024C", - "A2849G", - "T3425C", - "T3674C", - "C4229T", - "C4250T", - "T4724A", - "T4955C", - "A5087G", - "C5235T", - "T6254C", - "T6605C", - "T7229C", - "C7230T", - "A7232G", - "G7720T", - "T8005C", - "C8581T", - "T8770C", - "A8902G", - "T9199C", - "C9886T", - "T9946C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: V517A; nsP3: A174T, H369Y, E378D, L455Q" - }, - "mutations": { - "nsP1": [ - "V517A" - ], - "nsP3": [ - "A174T", - "H369Y", - "E378D", - "L455Q" - ], - "nuc": [ - "A26C", - "A359G", - "G476A", - "C822T", - "G827A", - "C1175T", - "A1334G", - "T1594C", - "A1745G", - "G1763A", - "G1940A", - "G2093A", - "C2120T", - "T2402C", - "T2405C", - "C2435T", - "T3101C", - "A3113C", - "C3195T", - "A3365G", - "C3929T", - "A4085T", - "C4328T", - "C4349T", - "G4551A", - "C4583T", - "C4697T", - "C5136T", - "G5165T", - "T5395A", - "A5591G", - "T5879C", - "T5894C", - "C5963T", - "C6296T", - "A6725C", - "C6779T", - "T6923C", - "C6971T", - "T7284C", - "C7305T", - "A7322G", - "G7738A", - "C7813T", - "A7876G", - "T7969C", - "C8038T", - "G8668A", - "C9187T", - "A9190G", - "T9388C", - "C9481T", - "T9493C", - "A10105G", - "T10207A", - "C10540T", - "C10699T", - "C10849T", - "A10876G", - "C10912T" - ] - } - }, - "name": "KC344458.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21202026588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1970.0013698630137, - 1970.096555432944 - ], - "value": 1970.0013698630137 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1970": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3" - }, - "GRI Lineage Level 3": { - "value": "B.3" - }, - "GRI Lineage Level 4": { - "value": "B.3" - }, - "GRI Lineage Level 5": { - "value": "B.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: S395F; nsP1: A120T; nsP2: A535T; nsP3: T356P, S366F, A389V; nsP4: S563P", - "GRI Lineage Root": "B.3.1" - }, - "mutations": { - "E2": [ - "S395F" - ], - "nsP1": [ - "A120T" - ], - "nsP2": [ - "A535T" - ], - "nsP3": [ - "T356P", - "S366F", - "A389V" - ], - "nsP4": [ - "S563P" - ], - "nuc": [ - "G402A", - "T968C", - "T1056C", - "T1274C", - "G1517A", - "G1724A", - "G1766A", - "A2183G", - "C2450T", - "T3231C", - "G3252A", - "T3383C", - "C4088T", - "T4649C", - "T4664C", - "A5097C", - "A5099C", - "C5128T", - "C5197T", - "G5351A", - "T5469C", - "T5972C", - "C6204T", - "C6368T", - "A6389G", - "A6573C", - "A6575G", - "T6641C", - "A6815T", - "C7124T", - "T7389C", - "C7657T", - "C7936T", - "T8594C", - "T8629C", - "C8731T", - "A8824G", - "T8956C", - "T9070C", - "C9253T", - "T9562C", - "C9637T", - "C9747T", - "C10693T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: V103G; E1: I208V, S211T, T389A; E2: Q81R, S182R, S282L, F395S; nsP1: T120S, R229K, A508E; nsP2: Q75H, D454E, T495A, H617Y; nsP3: L65I, A360V, E379D, V389A, S521C; nsP4: L105V, E235D, P563S" - }, - "mutations": { - "CP": [ - "V103G" - ], - "E1": [ - "I208V", - "S211T", - "T389A" - ], - "E2": [ - "Q81R", - "S182R", - "S282L", - "F395S" - ], - "nsP1": [ - "T120S", - "R229K", - "A508E" - ], - "nsP2": [ - "Q75H", - "D454E", - "T495A", - "H617Y" - ], - "nsP3": [ - "L65I", - "A360V", - "E379D", - "V389A", - "S521C" - ], - "nsP4": [ - "L105V", - "E235D", - "P563S" - ], - "nuc": [ - "C228T", - "C281T", - "A402T", - "G476A", - "G521A", - "T554C", - "T678C", - "G730A", - "G734A", - "T741C", - "T758C", - "C809T", - "C905T", - "C953T", - "C1056T", - "G1109A", - "T1229A", - "A1235G", - "C1340T", - "C1367T", - "C1475T", - "C1553A", - "C1567A", - "G1616T", - "A1646T", - "T1694C", - "C1712T", - "A1718G", - "C1721T", - "T1781C", - "C1796T", - "G1874T", - "T1928C", - "C1970T", - "C2054T", - "A2111G", - "G2168T", - "C2219G", - "C2243T", - "T2291C", - "C2375T", - "A2477G", - "T2723C", - "T2840C", - "G2849A", - "C2949T", - "T3011G", - "G3050A", - "A3132G", - "T3155C", - "C3170T", - "C3176T", - "G3188A", - "C3194T", - "C3272T", - "C3366T", - "C3425T", - "C3498T", - "C3647T", - "C3719T", - "C3869T", - "C3929T", - "C4224A", - "T4601C", - "G4631A", - "A4781G", - "A4799G", - "G4862T", - "T4961C", - "G4964A", - "T4982C", - "A5093G", - "C5110T", - "A5168C", - "T5197C", - "T5288C", - "A5447G", - "T5456C", - "C5469T", - "A5592T", - "C5642T", - "C5714T", - "T5723C", - "G5795A", - "T5894C", - "C5972T", - "T5978C", - "T6014C", - "T6015G", - "C6065A", - "C6144T", - "T6191C", - "C6260T", - "A6266C", - "C6282T", - "G6407C", - "T6434C", - "T6467C", - "G6488T", - "T6497C", - "A6593T", - "C6635T", - "C6641T", - "T6677C", - "T6714C", - "C6758T", - "T6815C", - "G6857A", - "G6887A", - "A6893T", - "T7049C", - "C7172T", - "C7208T", - "C7214T", - "C7238T", - "C7389T", - "A7427G", - "C7603T", - "C7612T", - "G7621A", - "T7642C", - "T7657C", - "T7768C", - "C7855A", - "T7869G", - "T7925C", - "T7978C", - "C7990T", - "T7993C", - "T8045C", - "C8161T", - "C8422T", - "C8455T", - "T8695C", - "A8805G", - "G8806T", - "C8986T", - "C9025T", - "C9109A", - "C9187T", - "T9217C", - "A9352G", - "T9391A", - "C9408T", - "C9562T", - "T9592A", - "A9598G", - "C9640T", - "C9740A", - "T9747C", - "T9797C", - "C9826A", - "T9856C", - "C10084T", - "T10150C", - "T10195C", - "C10366T", - "C10375T", - "C10561T", - "A10621G", - "A10622G", - "T10631A", - "C10633A", - "C11077T", - "G11089T", - "G11113T", - "T11140C", - "A11165G", - "C11423T", - "G11431T", - "A11437T", - "A11438T", - "A11440T", - "C11444T" - ] - } - }, - "name": "MK796243.1", - "node_attrs": { - "author": { - "author": "Leon,B., Jimenez,C., Gonzalez-Barrientos,R. and Ramirez,L.", - "value": "Leon,B., Jimenez,C., Gonzalez-Barrientos,R. and Ramirez,L." - }, - "country": { - "confidence": { - "Costa_Rica": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Costa_Rica" - }, - "div": 0.22465358588190187, - "host": { - "value": "equine" - }, - "num_date": { - "confidence": [ - 2015.8068493150686, - 2015.8068493150686 - ], - "value": 2015.8068493150686 - }, - "place_of_collection": { - "value": "Costa_Rica" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2015": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2015" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.1" - }, - "GRI Lineage Level 3": { - "value": "B.3.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T1877A", - "G8185A", - "G11167A" - ] - } - }, - "name": "KC344441.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Nicaragua": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Nicaragua" - }, - "div": 0.21118083588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1968.7820486184626, - 1968.9986338797814 - ], - "value": 1968.9986338797814 - }, - "place_of_collection": { - "value": "Nicaragua" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1968": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.1" - }, - "GRI Lineage Level 3": { - "value": "B.3.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.1" - } - } - } - ], - "name": "NODE_0000100", - "node_attrs": { - "country": { - "confidence": { - "Costa_Rica": 0.001818708850588668, - "Guatemala": 0.16296752629537883, - "Nicaragua": 0.8331958426884216 - }, - "entropy": 0.4763459568538241, - "value": "Nicaragua" - }, - "div": 0.21000212588190187, - "num_date": { - "confidence": [ - 1968.7653586207136, - 1968.9108128314906 - ], - "value": 1968.8438465063425 - }, - "region": { - "confidence": { - "LA,C": 0.999999974125627 - }, - "entropy": 4.890924701206993e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.046366925351401814, - "1968": 0.8878313273309344, - "1970": 0.020411494050284664, - "1971": 0.0024402726178293192 - }, - "entropy": 0.639177974708704, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.1" - }, - "GRI Lineage Level 3": { - "value": "B.3.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.1" - } - } - } - ], - "name": "NODE_0000099", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.992264295319986, - "Nicaragua": 0.006824887174757392 - }, - "entropy": 0.04874569184936405, - "value": "Guatemala" - }, - "div": 0.20674731588190187, - "num_date": { - "confidence": [ - 1967.8364119486685, - 1968.2446560882859 - ], - "value": 1967.9840543061696 - }, - "region": { - "confidence": { - "LA,C": 0.9999999924675772 - }, - "entropy": 1.5162140027258118e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.2678525377460032, - "1968": 0.4914832858840886, - "1970": 0.12297174187044799, - "1971": 0.006393776708969538 - }, - "entropy": 1.655152590015484, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3" - }, - "GRI Lineage Level 3": { - "value": "B.3" - }, - "GRI Lineage Level 4": { - "value": "B.3" - }, - "GRI Lineage Level 5": { - "value": "B.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: L407F" - }, - "mutations": { - "nsP3": [ - "L407F" - ], - "nuc": [ - "A743G", - "T1949C", - "C2171T", - "T2799C", - "T3614C", - "C4784T", - "C5250T", - "G6674A", - "A8341G", - "A9307C", - "T10129C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: V42I; CP: F2L, Y8F; nsP2: F295Y, M446L; nsP3: V476A" - }, - "mutations": { - "6k": [ - "V42I" - ], - "CP": [ - "F2L", - "Y8F" - ], - "nsP2": [ - "F295Y", - "M446L" - ], - "nsP3": [ - "V476A" - ], - "nuc": [ - "A26C", - "T1097C", - "C1106T", - "T1190C", - "G1766A", - "A1853G", - "T1979C", - "A2144G", - "T2154C", - "G2201A", - "C2213T", - "G2285A", - "T2291C", - "C2328T", - "T2533A", - "A2696G", - "A2985T", - "C3194A", - "C3195T", - "A3233G", - "A3395G", - "T3623C", - "T3756C", - "G3767A", - "A4085T", - "A4406G", - "A4418G", - "A4469G", - "C4502T", - "A4550G", - "T4667C", - "G4742A", - "A4814G", - "A4943T", - "C5018T", - "A5030G", - "A5273G", - "C5354T", - "G5384A", - "T5458C", - "C5690T", - "T6050C", - "T6590C", - "C6897T", - "T6900C", - "T7493C", - "T7565C", - "A7584T", - "C8032T", - "T8074C", - "A8119T", - "G8395A", - "C8408T", - "T8506C", - "C8537T", - "G8587A", - "A8596G", - "C8647T", - "T8689C", - "T8830A", - "C8932T", - "T9094C", - "A9595C", - "G9956A", - "G10333A", - "G10513A", - "C10540T", - "C10771T" - ] - } - }, - "name": "KC344444.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Honduras": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Honduras" - }, - "div": 0.21207819588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1967.8415604362822, - 1967.9986301369863 - ], - "value": 1967.9986301369863 - }, - "place_of_collection": { - "value": "Honduras" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3" - }, - "GRI Lineage Level 3": { - "value": "B.3" - }, - "GRI Lineage Level 4": { - "value": "B.3" - }, - "GRI Lineage Level 5": { - "value": "B.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: T495S, V582A; nsP3: T356I, F407S", - "GRI Lineage Root": "B.3.0" - }, - "mutations": { - "nsP2": [ - "T495S", - "V582A" - ], - "nsP3": [ - "T356I", - "F407S" - ], - "nuc": [ - "C542T", - "C590T", - "C953T", - "A1013G", - "T1194C", - "G1613A", - "G1649A", - "T2228C", - "A2330G", - "C2333T", - "A2546C", - "C2759T", - "T2786C", - "C2789T", - "A3132T", - "T3394C", - "C3416T", - "G3878A", - "C4205T", - "C4214T", - "C4787T", - "C4841T", - "T5081C", - "C5098T", - "T5251C", - "T6590A", - "T6714C", - "T6770C", - "G7001A", - "G7145A", - "T7193C", - "T7241C", - "T7259C", - "C7585T", - "T7661C", - "C8038T", - "A8104G", - "T8128C", - "T8494C", - "C9163T", - "C9250T", - "A9382G", - "G9463A", - "T10150C", - "C11323T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T2103C", - "T3536A", - "T4562C" - ] - }, - "labels": { - "GRI Lineage Root": "B.3.0.1" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: T188I; E1: P26S, A199V; E2: L369V; E3: K52N; nsP1: K3R; nsP3: I356L, G370*, E422V; nsP4: K118R" - }, - "mutations": { - "CP": [ - "T188I" - ], - "E1": [ - "P26S", - "A199V" - ], - "E2": [ - "L369V" - ], - "E3": [ - "K52N" - ], - "nsP1": [ - "K3R" - ], - "nsP3": [ - "I356L", - "G370*", - "E422V" - ], - "nsP4": [ - "K118R" - ], - "nuc": [ - "A52G", - "C1175T", - "C1475T", - "A1793G", - "C2132T", - "C2537T", - "T2972C", - "C3158T", - "T3461C", - "G3758A", - "G3974A", - "T4541C", - "C4886A", - "G4949A", - "A5097C", - "G5139T", - "A5296T", - "C5444A", - "C5672T", - "C5690T", - "A6055G", - "A6353G", - "G6716A", - "C7305T", - "C7855A", - "C8092T", - "C8122T", - "C8124T", - "C8318T", - "C8362T", - "A8542T", - "T8689C", - "T8830A", - "C9290T", - "T9505C", - "T9668G", - "G9688A", - "C10076T", - "C10596T", - "A10735G", - "T11122C" - ] - } - }, - "name": "KC344456.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Honduras": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Honduras" - }, - "div": 0.21383921588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1967.9663220136565, - 1967.9986301369863 - ], - "value": 1967.9986301369863 - }, - "place_of_collection": { - "value": "Honduras" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: A336D; nsP2: K505R, N669K" - }, - "mutations": { - "nsP1": [ - "A336D" - ], - "nsP2": [ - "K505R", - "N669K" - ], - "nuc": [ - "T857C", - "C1051A", - "C1415T", - "A3163G", - "T3317C", - "T3656A", - "C3737T", - "C4250T", - "T4340C", - "C5867T", - "A6332G", - "C6764T", - "T7262C", - "A8713G", - "C8758T", - "C9424T", - "G11035A", - "T11068C", - "T11137C" - ] - } - }, - "name": "KC344443.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21170696588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1970.5821917808219, - 1970.6561643835616 - ], - "value": 1970.5821917808219 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1970": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.1" - } - } - } - ], - "name": "NODE_0000103", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9866896905530907, - "Honduras": 0.013297389056405477 - }, - "entropy": 0.07084391066073895, - "value": "Guatemala" - }, - "div": 0.21008258588190187, - "num_date": { - "confidence": [ - 1967.6350342867545, - 1967.788920293855 - ], - "value": 1967.72345707587 - }, - "region": { - "confidence": { - "LA,C": 0.9999999994896973 - }, - "entropy": 1.1643309488910919e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.9421959244952112, - "1968": 0.049444272678302696, - "1970": 0.004725866713822839 - }, - "entropy": 0.2640748008153031, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C905T", - "A3086G", - "C3737T", - "C6870T", - "G7436A", - "G7732A", - "C8932T", - "C9031T", - "C10771T", - "A11330G" - ] - }, - "labels": { - "GRI Lineage Root": "B.3.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: P249L; nsP1: M462I; nsP3: V384M, F553Y" - }, - "mutations": { - "E1": [ - "P249L" - ], - "nsP1": [ - "M462I" - ], - "nsP3": [ - "V384M", - "F553Y" - ], - "nuc": [ - "C23G", - "C278T", - "G293T", - "C428T", - "G497A", - "C1022T", - "G1430T", - "G1742A", - "C1796T", - "A1919T", - "C2558T", - "C2949T", - "T3125C", - "G3953A", - "C4616T", - "T5000C", - "G5181A", - "T5405C", - "T5689A", - "C5693T", - "A6230T", - "C6320T", - "C6527T", - "G6617A", - "G6692A", - "C7040T", - "A7250G", - "A7744T", - "C7996T", - "C8644T", - "A8698G", - "C8857T", - "T9172C", - "G9220A", - "C10552T", - "C10561T", - "C10746T", - "T10804C" - ] - } - }, - "name": "KC344455.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Guatemala" - }, - "div": 0.21394116588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1979.0013698630137, - 1979.493581432175 - ], - "value": 1979.0013698630137 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1979": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1979" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: H394L; nsP4: I140T" - }, - "mutations": { - "nsP3": [ - "H394L" - ], - "nsP4": [ - "I140T" - ], - "nuc": [ - "G1184A", - "C1991T", - "C2717T", - "C3225T", - "C3230T", - "A3968T", - "T3977C", - "C3986T", - "A5212T", - "T6121C", - "C7855A", - "T7867C", - "T8962A", - "C9148T", - "C9451T", - "A9463C", - "T9592G", - "C10792T" - ] - } - }, - "name": "KC344442.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21218870588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1968.6654494664897, - 1968.9986338797814 - ], - "value": 1968.9986338797814 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1968": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.0" - } - } - } - ], - "name": "NODE_0000104", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9998695293870683 - }, - "entropy": 0.001307690022757135, - "value": "Guatemala" - }, - "div": 0.21052688588190185, - "num_date": { - "confidence": [ - 1968.255987305836, - 1968.7998762775055 - ], - "value": 1968.5289987542312 - }, - "region": { - "confidence": { - "LA,C": 0.9999999864890203 - }, - "entropy": 2.6410582870621484e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.2837270804929015, - "1968": 0.6427092292592864, - "1969": 0.003598580000302852, - "1970": 0.004336108719673062 - }, - "entropy": 1.1112028692591995, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.0" - } - } - } - ], - "name": "NODE_0000102", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9927024590369744, - "Honduras": 0.007296711278291186 - }, - "entropy": 0.043185959750818195, - "value": "Guatemala" - }, - "div": 0.20980181588190186, - "num_date": { - "confidence": [ - 1967.5955213930126, - 1967.7643705658809 - ], - "value": 1967.6758991099493 - }, - "region": { - "confidence": { - "LA,C": 0.9999999995693623 - }, - "entropy": 9.897802687664193e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.90448569924756, - "1968": 0.08907543011953158, - "1970": 0.0034929080634849277 - }, - "entropy": 0.35405413126628604, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0" - }, - "GRI Lineage Level 4": { - "value": "B.3.0" - }, - "GRI Lineage Level 5": { - "value": "B.3.0" - } - } - } - ], - "name": "NODE_0000101", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9919678341644368, - "Honduras": 0.007954645858288223 - }, - "entropy": 0.04726367886941242, - "value": "Guatemala" - }, - "div": 0.20587278588190186, - "num_date": { - "confidence": [ - 1966.7504018054808, - 1967.0693715932105 - ], - "value": 1966.9065622440921 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993196276 - }, - "entropy": 1.5327735532015165e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.9025042981617085, - "1968": 0.0872495933563264, - "1970": 0.004171541636205179 - }, - "entropy": 0.3815812794715461, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3" - }, - "GRI Lineage Level 3": { - "value": "B.3" - }, - "GRI Lineage Level 4": { - "value": "B.3" - }, - "GRI Lineage Level 5": { - "value": "B.3" - } - } - } - ], - "name": "NODE_0000098", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9973612591136461, - "Honduras": 0.0023155145787669526 - }, - "entropy": 0.019558360950380913, - "value": "Guatemala" - }, - "div": 0.20445006588190187, - "num_date": { - "confidence": [ - 1966.4878774702818, - 1966.8705077196005 - ], - "value": 1966.662279034555 - }, - "region": { - "confidence": { - "LA,C": 0.9999999968351112 - }, - "entropy": 6.645071069515286e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.004651756966905654, - "1967": 0.795514776470199, - "1968": 0.13787855227976628, - "1970": 0.0167082075527517 - }, - "entropy": 0.8584845512734353, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3" - }, - "GRI Lineage Level 3": { - "value": "B.3" - }, - "GRI Lineage Level 4": { - "value": "B.3" - }, - "GRI Lineage Level 5": { - "value": "B.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: N102T; E1: I208V; E2: V134A; nsP1: N322D, S458N; nsP2: H560Q, V582A; nsP3: K94R, T227A, A389T, G451R, I465K, V476A", - "GRI Lineage Root": "B.1" - }, - "mutations": { - "CP": [ - "N102T" - ], - "E1": [ - "I208V" - ], - "E2": [ - "V134A" - ], - "nsP1": [ - "N322D", - "S458N" - ], - "nsP2": [ - "H560Q", - "V582A" - ], - "nsP3": [ - "K94R", - "T227A", - "A389T", - "G451R", - "I465K", - "V476A" - ], - "nuc": [ - "C80T", - "C149T", - "A188G", - "A275G", - "C281T", - "T554C", - "C590T", - "C593T", - "C809A", - "A1008G", - "T1154C", - "A1235G", - "G1412A", - "G1417A", - "G1511A", - "G1649A", - "C1712T", - "C1718T", - "C1796T", - "G1814A", - "G1868A", - "T1928C", - "G2069A", - "C2237T", - "T2291C", - "A2348G", - "T2426C", - "C2462A", - "T2507C", - "T2520C", - "C2558T", - "T2579C", - "G2834A", - "T2840C", - "C2978T", - "C3191T", - "T3329A", - "G3371A", - "T3394C", - "C3503T", - "C3626T", - "C3641T", - "C3689T", - "A3701G", - "T3761C", - "A3770C", - "T3785C", - "T3797C", - "C3836T", - "T3848A", - "T3977C", - "T3987C", - "C3998T", - "C4091T", - "C4229T", - "C4250T", - "A4312G", - "A4511G", - "A4586T", - "C4613T", - "T4625C", - "A4710G", - "T4883C", - "T5000C", - "G5039A", - "C5147T", - "G5196A", - "C5234T", - "C5255T", - "G5382A", - "T5425A", - "T5426A", - "T5441C", - "T5458C", - "G5471A", - "C5585T", - "G5624A", - "A5702G", - "G5765A", - "T5810C", - "G5840A", - "C5900A", - "T5978C", - "T6011A", - "C6065T", - "C6074T", - "T6077C", - "A6218G", - "G6287A", - "A6341G", - "A6476G", - "C6821A", - "T6932A", - "C7016T", - "C7040T", - "T7050C", - "G7055T", - "C7103T", - "C7158T", - "G7175A", - "T7211C", - "C7230T", - "T7259C", - "G7265A", - "G7268A", - "A7340C", - "T7373C", - "T7395C", - "G7496A", - "A7559G", - "T7768C", - "G7846A", - "A7866C", - "C7870T", - "T7957A", - "G7975A", - "C8032T", - "C8038T", - "C8092T", - "C8098T", - "C8158T", - "C8374T", - "T8413A", - "C8461T", - "C8581T", - "T8929C", - "T8964C", - "T9202A", - "T9226A", - "C9326T", - "T9349C", - "C9376T", - "A9406C", - "C9583T", - "C9637T", - "T9667C", - "T9668C", - "A9670C", - "T9727G", - "C9748A", - "A9775G", - "T9791C", - "C10159T", - "T10216C", - "C10405T", - "A10525G", - "C10552T", - "A10622G", - "G10714T", - "C10738T", - "T10750C", - "T10768G", - "C10816T", - "A10831G", - "A10900G", - "A11104G", - "T11119C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP2: S148T; nsP3: E351G; nsP4: P602S" - }, - "mutations": { - "nsP2": [ - "S148T" - ], - "nsP3": [ - "E351G" - ], - "nsP4": [ - "P602S" - ], - "nuc": [ - "T533C", - "T728C", - "T1772C", - "G1874A", - "T2091A", - "C3326T", - "C3350T", - "C3366T", - "T3642C", - "G3884A", - "C4061T", - "C4334T", - "C4349T", - "T4637A", - "A4796G", - "A5083G", - "C5189T", - "C5333T", - "T6351C", - "G6659A", - "T6662A", - "C6839T", - "C7289T", - "C7505T", - "C7506T", - "C7918T", - "T8401C", - "T8686C", - "A9355G", - "C9430T", - "A9712G", - "C10084T", - "T10492C", - "C10852T", - "A10999C", - "T11158C", - "T11287A", - "A11330T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: R407S; nsP1: K399T; nsP2: A174P; nsP3: A544S; nsP4: D152G", - "GRI Lineage Root": "B.1.3" - }, - "mutations": { - "E2": [ - "R407S" - ], - "nsP1": [ - "K399T" - ], - "nsP2": [ - "A174P" - ], - "nsP3": [ - "A544S" - ], - "nsP4": [ - "D152G" - ], - "nuc": [ - "C599T", - "G1049A", - "A1240C", - "C1721T", - "G2169C", - "C3008T", - "T3350A", - "T3914C", - "T4325C", - "T5393C", - "C5657T", - "G5661T", - "C5792T", - "T5862C", - "A6157G", - "C7340T", - "C7439T", - "C9286T", - "A9508G", - "G9649A", - "C9782A", - "C10015T", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: G416E, A418N, I419T, V431T; nsP1: M184V, T399K; nsP2: P174A; nsP3: S544A; nsP4: G152D" - }, - "mutations": { - "E1": [ - "G416E", - "A418N", - "I419T", - "V431T" - ], - "nsP1": [ - "M184V", - "T399K" - ], - "nsP2": [ - "P174A" - ], - "nsP3": [ - "S544A" - ], - "nsP4": [ - "G152D" - ], - "nuc": [ - "A1T", - "G4A", - "A594G", - "C1240A", - "C2169G", - "T5661G", - "G6157A", - "G11247A", - "G11252A", - "C11253A", - "T11254C", - "T11256C", - "G11291A", - "T11292C" - ] - } - }, - "name": "MK028849.1", - "node_attrs": { - "author": { - "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", - "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." - }, - "country": { - "confidence": { - "Guatemala": 0.2962912259530842, - "Honduras": 0.07556831145576559, - "Mexico": 0.07708974072563382, - "Nicaragua": 0.06212043628110876 - }, - "entropy": 2.3998175426521975, - "value": "Guatemala" - }, - "div": 0.21624523588190186, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2018.521917808219, - 2018.521917808219 - ], - "value": 2018.521917808219 - }, - "region": { - "confidence": { - "?": 0.017518696988117453, - "AUSNZ": 0.04150868870787821, - "LA,C": 0.9409726143040045 - }, - "entropy": 0.26017860299596307, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2018": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2018" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.3" - }, - "GRI Lineage Level 3": { - "value": "B.1.3" - }, - "GRI Lineage Level 4": { - "value": "B.1.3" - }, - "GRI Lineage Level 5": { - "value": "B.1.3" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "U34999.1", - "node_attrs": { - "author": { - "author": "Oberste,M.S., Parker,M.D. and Smith,J.F.", - "value": "Oberste,M.S., Parker,M.D. and Smith,J.F." - }, - "country": { - "confidence": { - "Guatemala": 0.5029758750559062, - "Honduras": 0.05764404965349773, - "Mexico": 0.05941976890226232, - "Nicaragua": 0.0453169622193828 - }, - "entropy": 1.9530064685199688, - "value": "Guatemala" - }, - "div": 0.21571311588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1995.6479452054793, - 1995.6479452054793 - ], - "value": 1995.6479452054793 - }, - "region": { - "confidence": { - "?": 0.009695045015366149, - "AUSNZ": 0.02330140974780479, - "LA,C": 0.9670035452368292 - }, - "entropy": 0.1649891973320784, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.3" - }, - "GRI Lineage Level 3": { - "value": "B.1.3" - }, - "GRI Lineage Level 4": { - "value": "B.1.3" - }, - "GRI Lineage Level 5": { - "value": "B.1.3" - } - } - } - ], - "name": "NODE_0000107", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.5054482784937396, - "Honduras": 0.0573985484554742, - "Mexico": 0.05917308747002962, - "Nicaragua": 0.04510547056054154 - }, - "entropy": 1.946632852016645, - "value": "Guatemala" - }, - "div": 0.21534506588190186, - "num_date": { - "confidence": [ - 1995.4969425073164, - 1995.6199401886151 - ], - "value": 1995.574871625765 - }, - "region": { - "confidence": { - "?": 0.009624717698041907, - "AUSNZ": 0.0231353285460446, - "LA,C": 0.9672399537559135 - }, - "entropy": 0.16404586505495639, - "value": "LA,C" - }, - "year": { - "confidence": { - "1993": 0.003924038666859193, - "1994": 0.0037243890031482753, - "1995": 0.8943731307139752, - "1998": 0.003260950833454508 - }, - "entropy": 0.7419231234423381, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.3" - }, - "GRI Lineage Level 3": { - "value": "B.1.3" - }, - "GRI Lineage Level 4": { - "value": "B.1.3" - }, - "GRI Lineage Level 5": { - "value": "B.1.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: S644A; nsP4: I47L", - "GRI Lineage Root": "B.1.1" - }, - "mutations": { - "nsP2": [ - "S644A" - ], - "nsP4": [ - "I47L" - ], - "nuc": [ - "T770C", - "T3579G", - "C5690T", - "A5841C", - "G8632A", - "A10639G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A26C", - "G3380T", - "T4622C", - "T4700C", - "G5780A", - "C6320T", - "T11194C" - ] - }, - "labels": { - "GRI Lineage Root": "B.1.1.1" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: N444D; nsP4: E179K" - }, - "mutations": { - "nsP1": [ - "N444D" - ], - "nsP4": [ - "E179K" - ], - "nuc": [ - "C653T", - "A1374G", - "T3800C", - "C5781T", - "G6237A", - "C6911T", - "G8560A", - "A10429G" - ] - } - }, - "name": "KC344454.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21596148588190184, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1971.0013698630137, - 1971.0962207231573 - ], - "value": 1971.0013698630137 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1971": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: N492H" - }, - "mutations": { - "nsP1": [ - "N492H" - ], - "nuc": [ - "T1151C", - "A1518C", - "T3623C", - "C9805T" - ] - } - }, - "name": "KC344436.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21560613588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1970.5821917808219, - 1970.6523723838686 - ], - "value": 1970.5821917808219 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1970": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.1" - } - } - } - ], - "name": "NODE_0000109", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999822165234 - }, - "entropy": 3.7354825772288114e-7, - "value": "Guatemala" - }, - "div": 0.21525185588190185, - "num_date": { - "confidence": [ - 1970.4244287004576, - 1970.5952572000676 - ], - "value": 1970.522164073965 - }, - "region": { - "confidence": { - "LA,C": 0.9999999995214147 - }, - "entropy": 1.0950272134474148e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.0022395699170120746, - "1968": 0.04471439735535282, - "1970": 0.5649884308519713, - "1971": 0.3596190946511751 - }, - "entropy": 1.0505312122239248, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C5960T", - "C11077T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: Q39R" - }, - "mutations": { - "CP": [ - "Q39R" - ], - "nuc": [ - "A7677G" - ] - } - }, - "name": "KC344435.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21494927588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1968.9705606315565, - 1968.9986338797814 - ], - "value": 1968.9986338797814 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1968": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C378T", - "C1313T", - "C1802T", - "T2405C", - "C4749T", - "T7783C", - "T7798C", - "C8446T", - "C10027T", - "T10141C" - ] - }, - "labels": { - "GRI Lineage Root": "B.1.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP4: K229N" - }, - "mutations": { - "nsP4": [ - "K229N" - ], - "nuc": [ - "A2189G", - "T2723C", - "A6389T", - "T7019C", - "G8296T" - ] - } - }, - "name": "KC344467.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Guatemala" - }, - "div": 0.21619262588190183, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1972.0013661202186, - 1972.2996654381548 - ], - "value": 1972.0013661202186 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1972": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1972" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: D352N; nsP4: A108V" - }, - "mutations": { - "nsP2": [ - "D352N" - ], - "nsP4": [ - "A108V" - ], - "nuc": [ - "A1601G", - "G2703A", - "G4187A", - "T4694C", - "T4727C", - "A5336G", - "C6025T", - "C8149G", - "C9184T", - "A10429G" - ] - } - }, - "name": "KC344434.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Guatemala" - }, - "div": 0.21663754588190184, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1973.0013698630137, - 1973.1075503706186 - ], - "value": 1973.0013698630137 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1973": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.0" - } - } - } - ], - "name": "NODE_0000111", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999240857316 - }, - "entropy": 0.0000014848899315451415, - "value": "Guatemala" - }, - "div": 0.21574870588190184, - "num_date": { - "confidence": [ - 1971.8332089539613, - 1972.2175542916686 - ], - "value": 1971.955484564842 - }, - "region": { - "confidence": { - "LA,C": 0.999999997999016 - }, - "entropy": 4.2931125607901424e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.010092326683035056, - "1970": 0.0023886893591102, - "1972": 0.8172816623209392, - "1973": 0.13205997035848463 - }, - "entropy": 0.7606808897195374, - "value": "1972" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.0" - } - } - } - ], - "name": "NODE_0000110", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999850779651 - }, - "entropy": 3.1578842539375476e-7, - "value": "Guatemala" - }, - "div": 0.21486000588190185, - "num_date": { - "confidence": [ - 1968.973250010016, - 1968.9978328110976 - ], - "value": 1968.9895551013656 - }, - "region": { - "confidence": { - "LA,C": 0.9999999996137275 - }, - "entropy": 8.920094085698466e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.8134966632087557, - "1970": 0.041881725448676375, - "1971": 0.07830549503254093, - "1972": 0.016140024456518156 - }, - "entropy": 0.9009507441100909, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1" - } - } - } - ], - "name": "NODE_0000108", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999346578571 - }, - "entropy": 0.0000012357583483593118, - "value": "Guatemala" - }, - "div": 0.21468260588190186, - "num_date": { - "confidence": [ - 1968.949918797576, - 1968.992444270363 - ], - "value": 1968.9748646685487 - }, - "region": { - "confidence": { - "LA,C": 0.9999999992766357 - }, - "entropy": 1.6251889452771837e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.6576331079374176, - "1970": 0.08119954771087816, - "1971": 0.163102831538275, - "1972": 0.014192255016523145 - }, - "entropy": 1.3518972084242957, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1" - } - } - } - ], - "name": "NODE_0000106", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999859636812242 - }, - "entropy": 0.00019220033772540977, - "value": "Guatemala" - }, - "div": 0.21387706588190186, - "num_date": { - "confidence": [ - 1968.8540448845758, - 1968.9470132580996 - ], - "value": 1968.9046057308096 - }, - "region": { - "confidence": { - "LA,C": 0.999999791273403 - }, - "entropy": 0.0000035269037301072304, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.5942672650832576, - "1970": 0.07499198135001447, - "1971": 0.1733108578764003, - "1972": 0.014341505266015391 - }, - "entropy": 1.67641865250597, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T1694C", - "T3935C", - "G4469A", - "T5393C", - "A6011G", - "C7340T", - "C8062A", - "C8731T", - "C9184T", - "C9631T", - "C9640T", - "C9670T", - "T9709C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: Y373F; E2: E303D; nsP2: A582V; nsP3: Q395R, L407P, E439V; nsP4: M276L, C597W" - }, - "mutations": { - "E1": [ - "Y373F" - ], - "E2": [ - "E303D" - ], - "nsP2": [ - "A582V" - ], - "nsP3": [ - "Q395R", - "L407P", - "E439V" - ], - "nsP4": [ - "M276L", - "C597W" - ], - "nuc": [ - "C28T", - "T536C", - "C578T", - "C905T", - "C1022T", - "C1475T", - "G1748A", - "T1823C", - "C1931T", - "C2120T", - "C2129T", - "C2132T", - "T2180C", - "C2840T", - "C3230T", - "C3257T", - "C3394T", - "C4277T", - "A4433C", - "C4496T", - "G4559A", - "C4658T", - "A5215G", - "G5249A", - "T5251C", - "C5282T", - "A5347T", - "C5423A", - "A5591T", - "T6191C", - "G6362T", - "T6410C", - "A6528T", - "C6704T", - "A6821T", - "C7005T", - "C7100T", - "C7148T", - "C7214T", - "T7229C", - "T7493G", - "C7585T", - "C7612T", - "G7774A", - "A7942G", - "T8026C", - "T8032C", - "C8050A", - "T8242C", - "T8323C", - "C8488T", - "C8527T", - "C8590T", - "T8770C", - "T8962G", - "T9016C", - "A9040G", - "T9172C", - "A9247T", - "C9290T", - "T9326C", - "A9472C", - "T9526C", - "A9572C", - "C9868T", - "C9938T", - "A10384T", - "G10831A", - "T10984C", - "A11118T", - "C11119T", - "T11140C", - "C11364T", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: A299V; nsP4: T181A" - }, - "mutations": { - "E1": [ - "A299V" - ], - "nsP4": [ - "T181A" - ], - "nuc": [ - "C1119T", - "C1199T", - "T3074C", - "A3923T", - "C4334T", - "G4826A", - "T6144C", - "A6243G", - "C6446A", - "G10066A", - "A10399G", - "C10896T" - ] - } - }, - "name": "KC344527.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.2182921758819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1977.0013698630137, - 1977.9986301369863 - ], - "value": 1977.806965775957 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1977": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C807T", - "T10555C" - ] - }, - "labels": { - "GRI Lineage Root": "B.1.2" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP4: S563F" - }, - "mutations": { - "nsP4": [ - "S563F" - ], - "nuc": [ - "C2756T", - "C7390T", - "C9871T" - ] - } - }, - "name": "KC344437.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Guatemala" - }, - "div": 0.2176614358819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1977.6129626825873, - 1977.9986301369863 - ], - "value": 1977.9986301369863 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1977": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.2" - }, - "GRI Lineage Level 3": { - "value": "B.1.2" - }, - "GRI Lineage Level 4": { - "value": "B.1.2" - }, - "GRI Lineage Level 5": { - "value": "B.1.2" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: I377L", - "GRI Lineage Root": "B.1.2.0" - }, - "mutations": { - "E2": [ - "I377L" - ], - "nuc": [ - "C6320T", - "A9692C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P98L; E2: A413V; nsP1: A98V, E499A; nsP2: K225R, E506G, H617Y; nsP3: K147R; nsP4: A601T" - }, - "mutations": { - "CP": [ - "P98L" - ], - "E2": [ - "A413V" - ], - "nsP1": [ - "A98V", - "E499A" - ], - "nsP2": [ - "K225R", - "E506G", - "H617Y" - ], - "nsP3": [ - "K147R" - ], - "nsP4": [ - "A601T" - ], - "nuc": [ - "C337T", - "C1367T", - "C1455T", - "A1540C", - "T2135C", - "A2323G", - "A3166G", - "C3479T", - "C3498T", - "T3524C", - "A4471G", - "C4697T", - "C6260T", - "T6821C", - "G7503A", - "C7854T", - "T9235C", - "C9801T" - ] - } - }, - "name": "AF448539.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.9464863610503239, - "Honduras": 0.006811790529844044, - "Mexico": 0.007129560809338911, - "Nicaragua": 0.005083926760366196 - }, - "entropy": 0.3432754478744189, - "value": "Guatemala" - }, - "div": 0.2191663958819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1980.0013661202186, - 1980.8989071038252 - ], - "value": 1980.0013661202186 - }, - "region": { - "confidence": { - "AUSNZ": 0.0018796576819654469, - "LA,C": 0.9973507208077866 - }, - "entropy": 0.019961636854750504, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1980": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1980" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.2" - }, - "GRI Lineage Level 3": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.2.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: K3T; nsP3: S62L" - }, - "mutations": { - "nsP1": [ - "K3T" - ], - "nsP3": [ - "S62L" - ], - "nuc": [ - "A26C", - "T28C", - "A52C", - "G3089A", - "C4133T", - "C4216T", - "T7091C", - "C9709T" - ] - } - }, - "name": "KC344438.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.2182799958819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1978.0013698630137, - 1978.4982939224558 - ], - "value": 1978.0013698630137 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1978": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1978" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.2" - }, - "GRI Lineage Level 3": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.2.0" - } - } - } - ], - "name": "NODE_0000115", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999978534606677 - }, - "entropy": 0.000035254839385829884, - "value": "Guatemala" - }, - "div": 0.2175702258819019, - "num_date": { - "confidence": [ - 1977.635853432928, - 1978.3507818884996 - ], - "value": 1977.9181830536886 - }, - "region": { - "confidence": { - "LA,C": 0.9999999199468138 - }, - "entropy": 0.0000014296358087577535, - "value": "LA,C" - }, - "year": { - "confidence": { - "1977": 0.47325474277264784, - "1978": 0.49031985838039005, - "1980": 0.016317940974162212 - }, - "entropy": 0.92542665932465, - "value": "1978" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.2" - }, - "GRI Lineage Level 3": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.2.0" - } - } - } - ], - "name": "NODE_0000114", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999972622635 - }, - "entropy": 6.260178621945493e-8, - "value": "Guatemala" - }, - "div": 0.2173934158819019, - "num_date": { - "confidence": [ - 1977.5271192490845, - 1977.99782892531 - ], - "value": 1977.859545640523 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999255869 - }, - "entropy": 1.8385568258034357e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1977": 0.9923163293989404, - "1978": 0.00719528844388795 - }, - "entropy": 0.04847828554873572, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.2" - }, - "GRI Lineage Level 3": { - "value": "B.1.2" - }, - "GRI Lineage Level 4": { - "value": "B.1.2" - }, - "GRI Lineage Level 5": { - "value": "B.1.2" - } - } - } - ], - "name": "NODE_0000113", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999435317756 - }, - "entropy": 0.0000011216002691295677, - "value": "Guatemala" - }, - "div": 0.21722073588190188, - "num_date": { - "confidence": [ - 1977.163770137296, - 1977.8716036301187 - ], - "value": 1977.5739429012879 - }, - "region": { - "confidence": { - "LA,C": 0.9999999985612646 - }, - "entropy": 3.1342346091610036e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1977": 0.9958710182580341, - "1978": 0.0031499566757776125 - }, - "entropy": 0.032691947737540035, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: S218N; nsP1: E106D; nsP2: H617Y; nsP3: S366P, L455M, L480F; nsP4: S604A" - }, - "mutations": { - "E2": [ - "S218N" - ], - "nsP1": [ - "E106D" - ], - "nsP2": [ - "H617Y" - ], - "nsP3": [ - "S366P", - "L455M", - "L480F" - ], - "nsP4": [ - "S604A" - ], - "nuc": [ - "G362T", - "G1289A", - "G1856A", - "C1865T", - "T2006C", - "A2108G", - "C2120A", - "A2150G", - "C2561T", - "C2717T", - "C3008T", - "C3296T", - "C3479T", - "C3498T", - "T3524C", - "T4200C", - "C4226T", - "T4232C", - "G4481C", - "T4586C", - "T4664C", - "C4749T", - "C4931T", - "T5127C", - "C5394A", - "A5471C", - "C6134T", - "C6398T", - "C6666T", - "T6714C", - "C6911T", - "T6959A", - "C7178T", - "C7196A", - "T7445C", - "T7512G", - "T7978C", - "C8110T", - "G8395A", - "A8713C", - "G9216A", - "A9508G", - "T9517C", - "A9721G", - "G9775A", - "C9874T", - "C10079T", - "C10147T", - "T10468C", - "G10489T", - "T11155C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: T162I; E2: S247P; nsP2: M446T; nsP3: S317F, A476V" - }, - "mutations": { - "E1": [ - "T162I" - ], - "E2": [ - "S247P" - ], - "nsP2": [ - "M446T" - ], - "nsP3": [ - "S317F", - "A476V" - ], - "nuc": [ - "C254T", - "C1544T", - "T2986C", - "C4981T", - "C5458T", - "C8122T", - "T9094C", - "T9124C", - "T9302C", - "C10485T", - "C10486T" - ] - } - }, - "name": "KC344466.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21632869588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1971.7498328129957, - 1971.9986301369863 - ], - "value": 1971.9986301369863 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1971": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: N101H; nsP2: N669S" - }, - "mutations": { - "CP": [ - "N101H" - ], - "nsP2": [ - "N669S" - ], - "nuc": [ - "T887C", - "T1274C", - "A1292G", - "A1682G", - "C2129T", - "C2243T", - "C2342A", - "A2525G", - "A2822G", - "G3041A", - "T3287C", - "C3311T", - "C3317T", - "A3655G", - "T4211C", - "T4622C", - "A4718G", - "T4910A", - "C5606T", - "C5642T", - "C5924A", - "C6035T", - "G6251A", - "T6395A", - "T6434A", - "T6437C", - "C6545T", - "G6800A", - "T7040C", - "C7439A", - "A7862C", - "C8084T", - "T8461C", - "T8515C", - "A8983G", - "T9187G", - "G9283A", - "G9523A", - "A9748G", - "C9760T", - "T9958C", - "C10084T", - "T10397C", - "T10411C", - "T10600C", - "T10828C", - "T11218A", - "C11364T", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E117K; nsP2: Q560K; nsP3: S355L" - }, - "mutations": { - "E2": [ - "E117K" - ], - "nsP2": [ - "Q560K" - ], - "nsP3": [ - "S355L" - ], - "nuc": [ - "C578T", - "C1769T", - "C1928T", - "T1979C", - "C2045T", - "C2759T", - "G3089A", - "C3327A", - "C5095T", - "A5945G", - "T5957C", - "C8551T", - "G8912A", - "C9391T", - "T10339C", - "T10720C" - ] - } - }, - "name": "AF448537.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.005449471578861385, - "Guatemala": 0.11155770471272397, - "Honduras": 0.0054462351917534, - "Mexico": 0.840228270702515 - }, - "entropy": 0.6558710780408553, - "value": "Mexico" - }, - "div": 0.2211131558819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1993.0013698630137, - 1993.9986301369863 - ], - "value": 1993.9986301369863 - }, - "region": { - "confidence": { - "LA,C": 0.9992313844135547 - }, - "entropy": 0.006733202374960355, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1993": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1993" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: I487V" - }, - "mutations": { - "nsP1": [ - "I487V" - ], - "nuc": [ - "T710C", - "A1503G", - "C2426T", - "T3231C", - "C3254T", - "C4496T", - "C6782T", - "C10771T", - "T11095C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: Y180H; nsP2: A582V, A624T; nsP3: H401Y" - }, - "mutations": { - "E1": [ - "Y180H" - ], - "nsP2": [ - "A582V", - "A624T" - ], - "nsP3": [ - "H401Y" - ], - "nuc": [ - "A53G", - "A470G", - "C554T", - "T755C", - "C758T", - "T1955C", - "C2085T", - "C2855T", - "C3257T", - "C3326T", - "C3394T", - "G3519A", - "C3818T", - "G3878A", - "C5232T", - "T5429C", - "C5607T", - "T6651C", - "C6722T", - "C6758T", - "A6974T", - "C7062T", - "T7158C", - "A7256G", - "T7328C", - "T8080C", - "C8134T", - "T9295C", - "T9730C", - "T10099C", - "T10538C" - ] - } - }, - "name": "KC344515.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.22324621588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2001.0013698630137, - 2001.898904109589 - ], - "value": 2001.0013698630137 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2001": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A1556G", - "A2567G", - "A2969G", - "C10027T" - ] - }, - "labels": { - "GRI Lineage Root": "B.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2579T", - "A4292G", - "A6224G", - "A6287G", - "T6851G", - "C10420T", - "C10873T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "AF448538.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.003155555168451705, - "Mexico": 0.9883325825644077 - }, - "entropy": 0.0913600436780813, - "value": "Mexico" - }, - "div": 0.2214632858819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1996.8884248561744, - 1996.9926551165088 - ], - "value": 1996.9467447713982 - }, - "region": { - "confidence": { - "LA,C": 0.9994872349426175 - }, - "entropy": 0.004705807789457049, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1996": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: E117K", - "GRI Lineage Root": "B.1.0.1" - }, - "mutations": { - "E2": [ - "E117K" - ], - "nuc": [ - "G8912A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "AF448535.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." - }, - "country": { - "confidence": { - "Belize": 0.001405046941717241, - "Colombia": 0.0012799051177942, - "Guatemala": 0.003723608043105253, - "Mexico": 0.9837872975630536 - }, - "entropy": 0.12249311852547119, - "value": "Mexico" - }, - "div": 0.2215516558819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1996.9183399466572, - 1996.9986338797814 - ], - "value": 1996.966539094537 - }, - "region": { - "confidence": { - "LA,C": 0.9992325035500857 - }, - "entropy": 0.006734068093929818, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1996": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: D179A; nsP3: V393E, M455R" - }, - "mutations": { - "nsP1": [ - "D179A" - ], - "nsP3": [ - "V393E", - "M455R" - ], - "nuc": [ - "A580C", - "T5209A", - "T5395G" - ] - } - }, - "name": "AF448536.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." - }, - "country": { - "confidence": { - "Belize": 0.001405046941717241, - "Colombia": 0.0012799051177942, - "Guatemala": 0.003723608043105253, - "Mexico": 0.9837872975630536 - }, - "entropy": 0.12249311852547119, - "value": "Mexico" - }, - "div": 0.22181514588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1996.951526456934, - 1996.9986338797814 - ], - "value": 1996.9986338797814 - }, - "region": { - "confidence": { - "LA,C": 0.9992325035500857 - }, - "entropy": 0.006734068093929818, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1996": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.1" - } - } - } - ], - "name": "NODE_0000121", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.0031555551684517057, - "Mexico": 0.9883325825644078 - }, - "entropy": 0.09136004367808119, - "value": "Mexico" - }, - "div": 0.2215493058819019, - "num_date": { - "confidence": [ - 1996.8979218460709, - 1996.9857930765627 - ], - "value": 1996.950360980911 - }, - "region": { - "confidence": { - "LA,C": 0.9994872349426175 - }, - "entropy": 0.004705807789457051, - "value": "LA,C" - }, - "year": { - "confidence": { - "1996": 0.9999967699909821 - }, - "entropy": 0.00005022407948538215, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.1" - } - } - } - ], - "name": "NODE_0000120", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.0025831823811428684, - "Mexico": 0.9929008422561064 - }, - "entropy": 0.05799843403921755, - "value": "Mexico" - }, - "div": 0.22146093588190188, - "num_date": { - "confidence": [ - 1996.867129492375, - 1996.978884580797 - ], - "value": 1996.9309273855781 - }, - "region": { - "confidence": { - "LA,C": 0.9997421112619905 - }, - "entropy": 0.0025438651008242545, - "value": "LA,C" - }, - "year": { - "confidence": { - "1996": 0.9994205167830799 - }, - "entropy": 0.005882657334751629, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: A375T" - }, - "mutations": { - "E2": [ - "A375T" - ], - "nuc": [ - "T1604G", - "G2474A", - "C2666T", - "A6479G", - "G9686A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: N167T; nsP3: S335P" - }, - "mutations": { - "nsP1": [ - "N167T" - ], - "nsP3": [ - "S335P" - ], - "nuc": [ - "C107T", - "A544C", - "A1319G", - "G1670A", - "T1712C", - "G2258A", - "T3500C", - "T3600C", - "T5034C", - "C5963T", - "G6362T", - "T7642C", - "T8032C", - "A11002T", - "T11116C", - "T11170C", - "T11275G" - ] - } - }, - "name": "AY823299.1", - "node_attrs": { - "author": { - "author": "Weaver,S.C.", - "value": "Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.2227920458819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2001.0013698630137, - 2001.4280063499443 - ], - "value": 2001.0013698630137 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2001": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A26C", - "C807T", - "C1340T", - "C3287T", - "G3380A", - "C4112T", - "T5993C", - "T6062A", - "A7511T", - "C8590T", - "C9019T", - "T9326C", - "C9622T", - "C10348A" - ] - }, - "labels": { - "GRI Lineage Root": "B.1.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: H101N; E1: T389A; E2: I20V, I394V; nsP2: F659Y; nsP3: T197I, R467K" - }, - "mutations": { - "CP": [ - "H101N" - ], - "E1": [ - "T389A" - ], - "E2": [ - "I20V", - "I394V" - ], - "nsP2": [ - "F659Y" - ], - "nsP3": [ - "T197I", - "R467K" - ], - "nuc": [ - "C1022T", - "G1286A", - "C3209T", - "C3366T", - "T3625A", - "G4286A", - "C4621T", - "T5270C", - "C5354T", - "G5431A", - "G6311A", - "C6869T", - "T6911C", - "C7406T", - "C7862A", - "C8000T", - "C8134T", - "A8621G", - "A9202G", - "G9244A", - "C9349T", - "T9388C", - "C9682T", - "A9743G", - "C9796T", - "T10087C", - "T10159C", - "C10481T", - "T10886C", - "G10966T", - "A11165G", - "A11362C", - "G11431T", - "T11432G" - ] - } - }, - "name": "KC344465.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.2255565658819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.5630136986301, - 2010.5630136986301 - ], - "value": 2010.5630136986301 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: T6S, I135V", - "GRI Lineage Root": "B.1.0.0.0" - }, - "mutations": { - "E1": [ - "T6S", - "I135V" - ], - "nuc": [ - "G329A", - "C342T", - "C905T", - "C1175T", - "T3617C", - "A4442G", - "T4529C", - "C4979T", - "T6272C", - "C7395T", - "T8173C", - "C8875T", - "C9265T", - "T9670C", - "C9826T", - "A10016T", - "A10403G", - "T11200C", - "T11423C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: E76K" - }, - "mutations": { - "E1": [ - "E76K" - ], - "nuc": [ - "C26A", - "G10226A", - "G10228A", - "T10246G" - ] - } - }, - "name": "KC344482.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.2245686858819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2003.5921988768512, - 2003.7301007379463 - ], - "value": 2003.6466164960507 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2003": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344464.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.2242170358819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2003.5876712328768, - 2003.5876712328768 - ], - "value": 2003.5876712328768 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2003": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.0.0" - } - } - } - ], - "name": "NODE_0000124", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999983451843 - }, - "entropy": 3.8701746023064604e-8, - "value": "Mexico" - }, - "div": 0.2242148758819019, - "num_date": { - "confidence": [ - 2003.5498199458248, - 2003.5876712328768 - ], - "value": 2003.5862618452275 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999563484 - }, - "entropy": 1.1003395426235257e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2003": 0.9996331346087263 - }, - "entropy": 0.004216993823418924, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.0.0" - } - } - } - ], - "name": "NODE_0000123", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999992860344084 - }, - "entropy": 0.000012412288214768794, - "value": "Mexico" - }, - "div": 0.2225264058819019, - "num_date": { - "confidence": [ - 2003.1380196291427, - 2003.3618425511595 - ], - "value": 2003.2785245022478 - }, - "region": { - "confidence": { - "LA,C": 0.9999999817166808 - }, - "entropy": 3.51858436130557e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1996": 0.003887546293041835, - "2001": 0.058988525428155164, - "2003": 0.840640525005853, - "2010": 0.005711659222016551 - }, - "entropy": 0.9247427621972855, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.0" - } - } - } - ], - "name": "NODE_0000122", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.999998333415807 - }, - "entropy": 0.000025737522452142656, - "value": "Mexico" - }, - "div": 0.2212835258819019, - "num_date": { - "confidence": [ - 2000.554004448947, - 2001.2112173881585 - ], - "value": 2000.748407381879 - }, - "region": { - "confidence": { - "LA,C": 0.999999991198316 - }, - "entropy": 1.7578812468547175e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1996": 0.019835980267805496, - "2000": 0.0030170381550296476, - "2001": 0.8802825624652323, - "2003": 0.038962228751428435 - }, - "entropy": 0.7176047702929464, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0" - } - } - } - ], - "name": "NODE_0000119", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.0020064595615257286, - "Mexico": 0.997492193501442 - }, - "entropy": 0.01999443885790899, - "value": "Mexico" - }, - "div": 0.2208406458819019, - "num_date": { - "confidence": [ - 1996.7810909081288, - 1996.9262274575742 - ], - "value": 1996.8601620749803 - }, - "region": { - "confidence": { - "LA,C": 0.9999971325922873 - }, - "entropy": 0.000040841869916604786, - "value": "LA,C" - }, - "year": { - "confidence": { - "1993": 0.01258397235133493, - "1996": 0.8577204163639007, - "2001": 0.07954953645688212, - "2003": 0.002149620986192332 - }, - "entropy": 0.7282799397172084, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0" - } - } - } - ], - "name": "NODE_0000118", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.002103890648961362, - "Mexico": 0.9974079205202954 - }, - "entropy": 0.02046434569683582, - "value": "Mexico" - }, - "div": 0.2204870758819019, - "num_date": { - "confidence": [ - 1996.6552859496562, - 1996.8742511554344 - ], - "value": 1996.7680795049514 - }, - "region": { - "confidence": { - "LA,C": 0.9999986199030579 - }, - "entropy": 0.000020597113076176467, - "value": "LA,C" - }, - "year": { - "confidence": { - "1993": 0.02846742684216498, - "1996": 0.7708981217723498, - "2001": 0.09521553889176029, - "2003": 0.003664995915231236 - }, - "entropy": 1.163401970308926, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - } - ], - "name": "NODE_0000117", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.00449662667167951, - "Guatemala": 0.11174425753417429, - "Honduras": 0.004612011971343789, - "Mexico": 0.8495878359474808 - }, - "entropy": 0.6041895195746211, - "value": "Mexico" - }, - "div": 0.21969026588190188, - "num_date": { - "confidence": [ - 1992.3914856608862, - 1993.9771991944551 - ], - "value": 1993.506555324584 - }, - "region": { - "confidence": { - "LA,C": 0.9998583737293588 - }, - "entropy": 0.0014705269804937702, - "value": "LA,C" - }, - "year": { - "confidence": { - "1993": 0.7507221881654688, - "1995": 0.007318497809494184, - "1996": 0.04875032147849921, - "2001": 0.011495409874177404 - }, - "entropy": 1.4465254892483113, - "value": "1993" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - } - ], - "name": "NODE_0000116", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999717171601994 - }, - "entropy": 0.00035123767081357923, - "value": "Guatemala" - }, - "div": 0.21533748588190188, - "num_date": { - "confidence": [ - 1971.7939992327217, - 1971.9295672982137 - ], - "value": 1971.869635663749 - }, - "region": { - "confidence": { - "LA,C": 0.9999999836325757 - }, - "entropy": 3.1680210203602445e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.013920650852004538, - "1970": 0.004154546286094379, - "1971": 0.9058406074118865, - "1977": 0.0034658225023003904 - }, - "entropy": 0.6557061270734019, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - } - ], - "name": "NODE_0000112", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999958388863298 - }, - "entropy": 0.00006253295667401532, - "value": "Guatemala" - }, - "div": 0.21070153588190188, - "num_date": { - "confidence": [ - 1970.542909073422, - 1971.0494801130208 - ], - "value": 1970.8732767376696 - }, - "region": { - "confidence": { - "LA,C": 0.9999999463341258 - }, - "entropy": 9.74968672108614e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.08885170022672399, - "1970": 0.020398460335733948, - "1971": 0.5650595436281527, - "1977": 0.017759451116418176 - }, - "entropy": 2.2125320969176796, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - } - ], - "name": "NODE_0000105", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999699829709855 - }, - "entropy": 0.00035807198551714555, - "value": "Guatemala" - }, - "div": 0.21006070588190187, - "num_date": { - "confidence": [ - 1968.2738212719994, - 1968.5401018506777 - ], - "value": 1968.4031627041827 - }, - "region": { - "confidence": { - "LA,C": 0.9999999733285346 - }, - "entropy": 5.031960364826857e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.023557176186753997, - "1968": 0.46190138785278056, - "1970": 0.061659155251583775, - "1971": 0.20313486839651387 - }, - "entropy": 2.2247452949925317, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - } - ], - "name": "NODE_0000097", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9745643540803324, - "Mexico": 0.024162143591509817 - }, - "entropy": 0.12557008013464294, - "value": "Guatemala" - }, - "div": 0.19603911588190187, - "num_date": { - "confidence": [ - 1963.4358511023638, - 1964.2861420488018 - ], - "value": 1963.6580044879552 - }, - "region": { - "confidence": { - "LA,C": 0.9999999333987232 - }, - "entropy": 0.0000011956074754607793, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.15613248434987517, - "1967": 0.3116386505753704, - "1968": 0.08039223597943491, - "1971": 0.01856953817862071 - }, - "entropy": 2.926926582846528, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: A360T, A362G, H391N, C447R" - }, - "mutations": { - "nsP3": [ - "A360T", - "A362G", - "H391N", - "C447R" - ], - "nuc": [ - "C452T", - "C599T", - "T1191C", - "C2660T", - "C2717T", - "T2879C", - "T3935C", - "G3974A", - "G4244T", - "T4829C", - "T4907C", - "G5109A", - "C5116G", - "C5202A", - "T5370C", - "T5720C", - "T5870C", - "G5984T", - "G6131A", - "C6422T", - "T6477C", - "C6881T", - "C7612T", - "A7688C", - "A7942G", - "T8509C", - "T8689C", - "A9379G", - "T9478C", - "A9598G", - "C9622T", - "G9895A", - "T10261C", - "C10672A", - "T11056C", - "T11161C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: N101P, G104S, V136I; E2: P150L, V414I; nsP2: V750A; nsP3: E354V, S357L, T371A, V376M, H401Y, S408N, V421A; nsP4: I75V, A231V" - }, - "mutations": { - "CP": [ - "N101P", - "G104S", - "V136I" - ], - "E2": [ - "P150L", - "V414I" - ], - "nsP2": [ - "V750A" - ], - "nsP3": [ - "E354V", - "S357L", - "T371A", - "V376M", - "H401Y", - "S408N", - "V421A" - ], - "nsP4": [ - "I75V", - "A231V" - ], - "nuc": [ - "C80T", - "C228T", - "T401C", - "T620C", - "T692C", - "C815T", - "C905T", - "A926T", - "C1028T", - "G1049A", - "C1106T", - "T1151C", - "G1205A", - "C1220T", - "T1247C", - "T1430C", - "T1469C", - "G1547A", - "T1655A", - "C1667T", - "C1733T", - "A1958G", - "T1967C", - "C1991T", - "C2213T", - "T2414C", - "C2726T", - "A2732G", - "T2738C", - "A2744G", - "A2810G", - "C2849T", - "C3195T", - "T3242A", - "T3417C", - "T3425C", - "T3464C", - "T3743C", - "C3836T", - "T3898C", - "G4013A", - "C4100T", - "A4127T", - "A4160G", - "A4289G", - "T4316C", - "C4619T", - "C4808T", - "C4886T", - "A4895G", - "T4976C", - "A5092T", - "C5101T", - "A5142G", - "G5157A", - "C5232T", - "G5254A", - "T5293C", - "C5318T", - "C5354T", - "G5381A", - "T5385C", - "C5444T", - "A5468G", - "C5600T", - "C5867T", - "A5925G", - "A6182G", - "C6212T", - "C6394T", - "T6497C", - "T6506C", - "G6533A", - "G6602A", - "C6704T", - "G6776A", - "C7100T", - "C7103T", - "C7193T", - "C7196T", - "T7211C", - "T7217C", - "T7262C", - "G7280A", - "T7421C", - "T7693C", - "C7771T", - "C7813T", - "A7862C", - "A7863C", - "T7864C", - "T7867C", - "G7871A", - "C7918T", - "G7967A", - "C8026T", - "C8038T", - "C8041T", - "T8045C", - "A8065G", - "C8257T", - "T8401C", - "G8431A", - "C8576T", - "G8707A", - "T8866C", - "C8920T", - "C9012T", - "T9013G", - "A9097G", - "T9172C", - "C9184T", - "T9187A", - "A9367G", - "T9493C", - "T9604C", - "T9682C", - "G9688A", - "C9781A", - "G9803A", - "G9853A", - "C10138T", - "C10180T", - "G10198A", - "G10327A", - "A10333G", - "A10639G", - "C10789T", - "T11155C", - "T11393C" - ] - } - }, - "name": "KC344439.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.20874095588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1967.0013698630137, - 1967.898904109589 - ], - "value": 1967.0013698630137 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: L599F, E653D; nsP3: N337S, E399D, R402H, R415C, N433S, T435A, S517A" - }, - "mutations": { - "nsP2": [ - "L599F", - "E653D" - ], - "nsP3": [ - "N337S", - "E399D", - "R402H", - "R415C", - "N433S", - "T435A", - "S517A" - ], - "nuc": [ - "G209A", - "A299G", - "C593T", - "C1485T", - "C1499T", - "C1553T", - "A1739G", - "C1769T", - "C1802T", - "G1820A", - "A2012G", - "T2228C", - "G2390A", - "C2510T", - "C2846T", - "G2918A", - "T3065C", - "T3416C", - "A3446C", - "T3500C", - "A3608T", - "C3660T", - "T3851A", - "G4115A", - "T4169C", - "T4170C", - "G4202A", - "A4292G", - "T4325C", - "T4445C", - "T4628C", - "T4694C", - "T4700C", - "C4811T", - "T4872C", - "T4955C", - "C5018T", - "A5041G", - "A5228T", - "G5231A", - "G5236A", - "C5274T", - "A5329G", - "A5334G", - "T5580G", - "T5603C", - "T5735C", - "C5831T", - "C6035T", - "T6204C", - "C6236A", - "A6269G", - "A6299G", - "T6431C", - "C6869T", - "C6953T", - "T7091C", - "G7121A", - "C7214T", - "C7247T", - "T7259C", - "G7268A", - "T7726C", - "A7855C", - "T8095A", - "C8239T", - "C8260T", - "A8317G", - "C8390T", - "C8527T", - "A8917G", - "A9076T", - "A9160G", - "T9349C", - "T9409C", - "T9668C", - "T9727C", - "T10204C", - "C10366T", - "C10459T", - "T10576C", - "G10717T", - "C10912T", - "C10960T", - "T11083C", - "T11323C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T3428C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: N84S; nsP3: A333T" - }, - "mutations": { - "CP": [ - "N84S" - ], - "nsP3": [ - "A333T" - ], - "nuc": [ - "T473C", - "G1778C", - "T1883C", - "G2222A", - "T2672C", - "T2687C", - "T2819C", - "A3062G", - "C3116T", - "A3266G", - "C3401T", - "T4025C", - "C4328T", - "A4661G", - "C4694T", - "C4931T", - "G5028A", - "T5225C", - "C5306T", - "T5399C", - "C5672T", - "C5699T", - "T7028C", - "C7702T", - "G7738A", - "A7744G", - "A7812G", - "C8833T", - "C9223T", - "C9461T", - "C9481T", - "T10195C", - "C10405T", - "A11104G", - "C11236T" - ] - } - }, - "name": "KC344457.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21012169588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1963.6150684931506, - 1963.6150684931506 - ], - "value": 1963.6150684931506 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1963": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T3194C" - ] - }, - "labels": { - "GRI Lineage Root": "B.2" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: I107F; nsP3: V150A, Q405R; nsP4: C511S, A554T, V576A" - }, - "mutations": { - "nsP1": [ - "I107F" - ], - "nsP3": [ - "V150A", - "Q405R" - ], - "nsP4": [ - "C511S", - "A554T", - "V576A" - ], - "nuc": [ - "A363T", - "C2249T", - "A2543G", - "A3149G", - "G3173A", - "G3371T", - "C3410A", - "C3836T", - "C3935T", - "T3947C", - "G4040A", - "C4088T", - "T4331C", - "T4480C", - "A4577G", - "A5245G", - "T5963C", - "T5984G", - "C6065T", - "C6704T", - "C7184T", - "T7229C", - "T7233A", - "G7362A", - "T7429C", - "C8158T", - "A8344G", - "G8584A", - "C9326T", - "T9841A", - "C10540T", - "A10672T" - ] - } - }, - "name": "KC344446.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21010539588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1965.0013698630137, - 1965.897578383416 - ], - "value": 1965.0013698630137 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1965": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1965" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2" - }, - "GRI Lineage Level 3": { - "value": "B.2" - }, - "GRI Lineage Level 4": { - "value": "B.2" - }, - "GRI Lineage Level 5": { - "value": "B.2" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: T356I" - }, - "mutations": { - "nsP3": [ - "T356I" - ], - "nuc": [ - "T611C", - "T1409C", - "T1691C", - "G2285A", - "C2450T", - "G4385A", - "G4631A", - "A4817T", - "C5036T", - "C5098T", - "C5267T", - "C6365T", - "T6710C", - "C7711T", - "T8812C", - "A9319G", - "C10564T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T7028C" - ] - }, - "labels": { - "GRI Lineage Root": "B.2.1" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: I487L; nsP3: R364*, E378V, V406A" - }, - "mutations": { - "nsP1": [ - "I487L" - ], - "nsP3": [ - "R364*", - "E378V", - "V406A" - ], - "nuc": [ - "A26T", - "A1503T", - "A3851G", - "A3890G", - "C4325T", - "A5121T", - "A5164T", - "A5216G", - "T5248C", - "C5642T", - "C7025T", - "C8062A", - "T8173C", - "C8356T", - "T8506C", - "C8581T", - "A9775G" - ] - } - }, - "name": "KC344448.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21017834588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1969.0013698630137, - 1969.5438027293794 - ], - "value": 1969.0013698630137 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1969": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.1" - }, - "GRI Lineage Level 3": { - "value": "B.2.1" - }, - "GRI Lineage Level 4": { - "value": "B.2.1" - }, - "GRI Lineage Level 5": { - "value": "B.2.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: R222H, P480S; nsP2: V229I; nsP3: R457K" - }, - "mutations": { - "nsP1": [ - "R222H", - "P480S" - ], - "nsP2": [ - "V229I" - ], - "nsP3": [ - "R457K" - ], - "nuc": [ - "G709A", - "C1403A", - "C1482T", - "C1721T", - "G2334A", - "G2702A", - "T3417C", - "G5401A", - "C5714T", - "A8341G", - "C9391T", - "C10873T", - "T11116C" - ] - } - }, - "name": "KC344445.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.20982980588190187, - "host": { - "value": "Culex opisthopus" - }, - "num_date": { - "confidence": [ - 1964.5669398907103, - 1964.5669398907103 - ], - "value": 1964.5669398907103 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1964": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1964" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.1" - }, - "GRI Lineage Level 3": { - "value": "B.2.1" - }, - "GRI Lineage Level 4": { - "value": "B.2.1" - }, - "GRI Lineage Level 5": { - "value": "B.2.1" - } - } - } - ], - "name": "NODE_0000046", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999011754671 - }, - "entropy": 0.0000019127498182688758, - "value": "Mexico" - }, - "div": 0.20866713588190186, - "num_date": { - "confidence": [ - 1964.1866270495382, - 1964.4151009739505 - ], - "value": 1964.319466169116 - }, - "region": { - "confidence": { - "LA,C": 0.999999997350368 - }, - "entropy": 5.61054110995653e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.21750033003782518, - "1964": 0.7152198527586114, - "1967": 0.0023767339713479632, - "1969": 0.008041753491008283 - }, - "entropy": 1.0021692320625797, - "value": "1964" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.1" - }, - "GRI Lineage Level 3": { - "value": "B.2.1" - }, - "GRI Lineage Level 4": { - "value": "B.2.1" - }, - "GRI Lineage Level 5": { - "value": "B.2.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C5699T", - "C6431T", - "T9526C" - ] - }, - "labels": { - "GRI Lineage Root": "B.2.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P22S" - }, - "mutations": { - "CP": [ - "P22S" - ], - "nuc": [ - "C3059T", - "C7625T", - "C8623T", - "A9508G" - ] - } - }, - "name": "KC344431.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.20938039588190185, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1963.610559192821, - 1963.664383561644 - ], - "value": 1963.664383561644 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1963": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.0" - }, - "GRI Lineage Level 3": { - "value": "B.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.2.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: Q48R", - "GRI Lineage Root": "B.2.0.0" - }, - "mutations": { - "nsP3": [ - "Q48R" - ], - "nuc": [ - "C3008T", - "A4174G", - "T8350C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C3195T" - ] - } - }, - "name": "KC344447.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.20937715588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1966.2479452054795, - 1966.3158694878114 - ], - "value": 1966.2479452054795 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1966": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1966" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.0" - }, - "GRI Lineage Level 3": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.2.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: M10T; nsP3: A404V" - }, - "mutations": { - "CP": [ - "M10T" - ], - "nsP3": [ - "A404V" - ], - "nuc": [ - "C5242T", - "T7590C", - "T7993A" - ] - } - }, - "name": "KC344440.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.20955611588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1966.0013698630137, - 1966.2557002567607 - ], - "value": 1966.0290938490941 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1966": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1966" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.0" - }, - "GRI Lineage Level 3": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.2.0.0" - } - } - } - ], - "name": "NODE_0000132", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999857373616 - }, - "entropy": 3.035311111921907e-7, - "value": "Mexico" - }, - "div": 0.20928847588190186, - "num_date": { - "confidence": [ - 1965.9109865156186, - 1966.2081995465294 - ], - "value": 1965.9893263661456 - }, - "region": { - "confidence": { - "LA,C": 0.9999999996079386 - }, - "entropy": 9.048244755769375e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1966": 0.9994991710705093 - }, - "entropy": 0.005673349258704359, - "value": "1966" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.0" - }, - "GRI Lineage Level 3": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.2.0.0" - } - } - } - ], - "name": "NODE_0000131", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.999999988955258 - }, - "entropy": 2.3786296742039585e-7, - "value": "Mexico" - }, - "div": 0.20902202588190186, - "num_date": { - "confidence": [ - 1963.6220692508405, - 1963.6554411159746 - ], - "value": 1963.6399723105667 - }, - "region": { - "confidence": { - "LA,C": 0.9999999996964396 - }, - "entropy": 7.082723200527892e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.9964790287032511, - "1964": 0.0015073938956632058 - }, - "entropy": 0.031218841203783026, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.0" - }, - "GRI Lineage Level 3": { - "value": "B.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.2.0" - } - } - } - ], - "name": "NODE_0000129", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999966700943 - }, - "entropy": 7.566953811171254e-8, - "value": "Mexico" - }, - "div": 0.20866713588190186, - "num_date": { - "confidence": [ - 1963.578412074794, - 1963.6361492564426 - ], - "value": 1963.6102394124862 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999075971 - }, - "entropy": 2.263737694238608e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.9937652059328621, - "1964": 0.0035004773841499654 - }, - "entropy": 0.049227039235750863, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2" - }, - "GRI Lineage Level 3": { - "value": "B.2" - }, - "GRI Lineage Level 4": { - "value": "B.2" - }, - "GRI Lineage Level 5": { - "value": "B.2" - } - } - } - ], - "name": "NODE_0000128", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.99999999252859 - }, - "entropy": 1.6362103607629216e-7, - "value": "Mexico" - }, - "div": 0.20715389588190186, - "num_date": { - "confidence": [ - 1963.395785233851, - 1963.4920773781848 - ], - "value": 1963.443713742875 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997986364 - }, - "entropy": 4.779875006549433e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.9940129806949894, - "1964": 0.0018422122987630952, - "1965": 0.0015528762871015395, - "1967": 0.0013780331100820475 - }, - "entropy": 0.049156120091427294, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2" - }, - "GRI Lineage Level 3": { - "value": "B.2" - }, - "GRI Lineage Level 4": { - "value": "B.2" - }, - "GRI Lineage Level 5": { - "value": "B.2" - } - } - } - ], - "name": "NODE_0000127", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999616830415 - }, - "entropy": 7.208258070380475e-7, - "value": "Mexico" - }, - "div": 0.20706940588190187, - "num_date": { - "confidence": [ - 1963.371511035256, - 1963.4667407039424 - ], - "value": 1963.4304868890383 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999737482 - }, - "entropy": 6.7412061620103e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.9956160346104493, - "1967": 0.0023469651442720096 - }, - "entropy": 0.03623164879658071, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T1622C", - "C3195T", - "C3992T", - "T7028C", - "C10558T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP2: F599L; nsP3: T15M, Q405R; nsP4: S590I" - }, - "mutations": { - "nsP2": [ - "F599L" - ], - "nsP3": [ - "T15M", - "Q405R" - ], - "nsP4": [ - "S590I" - ], - "nuc": [ - "C464T", - "T566C", - "T620C", - "C638T", - "G1433T", - "A1760G", - "C1964T", - "A2543G", - "A3149G", - "T3444C", - "C3552T", - "C3833T", - "G4040A", - "C4075T", - "C4088T", - "T4340C", - "A4577G", - "A5245G", - "C5318T", - "T5963C", - "T6062A", - "C6419T", - "T6422C", - "A6614G", - "C6704T", - "C6812T", - "T7229C", - "T7328C", - "G7471T", - "G7714A", - "C7855A", - "G8104A", - "C8149T", - "C8164T", - "T8413C", - "C8497T", - "C8623T", - "T8798C", - "T9235C", - "C9409T", - "T9946C", - "T10630C", - "A11331C", - "C11423T" - ] - } - }, - "name": "KC344433.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Belize": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Belize" - }, - "div": 0.21121641588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1967.0013698630137, - 1967.898904109589 - ], - "value": 1967.0013698630137 - }, - "place_of_collection": { - "value": "Belize" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: P97T; nsP2: S778T; nsP3: S381G, A389T, Q395L; nsP4: K118R" - }, - "mutations": { - "CP": [ - "P97T" - ], - "nsP2": [ - "S778T" - ], - "nsP3": [ - "S381G", - "A389T", - "Q395L" - ], - "nsP4": [ - "K118R" - ], - "nuc": [ - "T473C", - "C515T", - "C809T", - "G1412A", - "A1790G", - "C1796T", - "T1883C", - "G2318A", - "A2652C", - "G2801A", - "C3008T", - "T3044C", - "G3137A", - "A3266G", - "T3494C", - "A3554T", - "T3623C", - "T3857C", - "T3981A", - "A4034G", - "G4058A", - "C4250T", - "T4298C", - "T4364C", - "T4596C", - "G4862T", - "C4872T", - "T4904C", - "A4919T", - "T4967C", - "A5172G", - "C5189T", - "G5196A", - "A5215T", - "A6055G", - "T6215C", - "C6296A", - "T6455C", - "C6608T", - "T6714C", - "C6852T", - "G6857A", - "C7124T", - "T7247A", - "C7702T", - "G7738A", - "G7747A", - "C7850A", - "G7975A", - "T7978C", - "C8170T", - "T8242C", - "G8314A", - "C8407T", - "C8408T", - "G8473A", - "C8581T", - "G8593A", - "C8782T", - "C8861T", - "C8944T", - "C8980T", - "T9076C", - "C9250T", - "C9403T", - "A9406C", - "A9616G", - "T9643C", - "C9805T", - "T10048C", - "C10312T", - "G10426A", - "G10684A", - "T11036C", - "A11191G", - "T11200A", - "C11236T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: S247L; nsP1: Q488H; nsP3: M218V, A331T, S335P, S355L, *367C, G381D" - }, - "mutations": { - "E2": [ - "S247L" - ], - "nsP1": [ - "Q488H" - ], - "nsP3": [ - "M218V", - "A331T", - "S335P", - "S355L", - "*367C", - "G381D" - ], - "nuc": [ - "T611C", - "C782A", - "G1508C", - "G2255A", - "G2258A", - "C2328T", - "T2405C", - "T2453C", - "T2819C", - "A2822G", - "T2850C", - "A3638G", - "C3788T", - "G3908A", - "C3998T", - "T4043C", - "C4535T", - "T4664C", - "A4683G", - "G5022A", - "T5034C", - "C5095T", - "A5132T", - "G5173A", - "A5336G", - "C6227T", - "T6254C", - "A6266C", - "C6368T", - "C6779T", - "C6791A", - "T7262C", - "C7409T", - "C8062A", - "C8590T", - "G8800A", - "C8998T", - "T9187C", - "C9241T", - "C9303T", - "C9391T", - "G10867A", - "C11311T" - ] - } - }, - "name": "KC344463.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21803026588190186, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 2009.823287671233, - 2009.823287671233 - ], - "value": 2009.823287671233 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "B.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S335P, S355L" - }, - "mutations": { - "nsP3": [ - "S335P", - "S355L" - ], - "nuc": [ - "T611C", - "T2453C", - "T2552C", - "T5034C", - "C5095T", - "C6227T", - "T6254C", - "A6266C", - "G6854A", - "T11326C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: T357K; nsP2: S731G; nsP3: V173I, E377G, H402R; nsP4: C511R" - }, - "mutations": { - "E2": [ - "T357K" - ], - "nsP2": [ - "S731G" - ], - "nsP3": [ - "V173I", - "E377G", - "H402R" - ], - "nsP4": [ - "C511R" - ], - "nuc": [ - "A26C", - "C758T", - "A909C", - "G1565A", - "A1577T", - "A1994G", - "C2531T", - "T3362G", - "C3780T", - "A3840G", - "A3968G", - "T3995C", - "G4548A", - "C4616T", - "A5161G", - "A5236G", - "A6257G", - "G6362A", - "A6509C", - "T6851C", - "T7233C", - "T7241A", - "T7253A", - "T7972C", - "T8137C", - "C8833T", - "C8932T", - "C9151A", - "C9196T", - "C9633A", - "G11008A", - "A11029G", - "G11379T" - ] - } - }, - "name": "KC344449.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21799654588190184, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2008.5177595628415, - 2008.5177595628415 - ], - "value": 2008.5177595628415 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2008": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: V376M, G451R, A527V; nsP4: V437I" - }, - "mutations": { - "nsP3": [ - "V376M", - "G451R", - "A527V" - ], - "nsP4": [ - "V437I" - ], - "nuc": [ - "G1727A", - "T2405C", - "C3410A", - "A3539G", - "A3923G", - "G4151A", - "T4727C", - "G4736A", - "A4877G", - "C4886T", - "G5157A", - "A5273G", - "G5382A", - "C5611T", - "A6341G", - "C6728T", - "G7001A", - "G7011A", - "C7172T", - "T7493C", - "C7494T", - "C8368T", - "C8455T", - "G8524A", - "A8734C", - "T9169C", - "C9178T", - "C9290T", - "G9418A", - "C9442T", - "G9460A", - "G9550T", - "C9637T", - "T9652C", - "A10120G", - "A10417G", - "C10540T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: H91Y; nsP2: A256V, K749R; nsP3: I92V" - }, - "mutations": { - "E2": [ - "H91Y" - ], - "nsP2": [ - "A256V", - "K749R" - ], - "nsP3": [ - "I92V" - ], - "nuc": [ - "A19T", - "T2057C", - "C2416T", - "T3425C", - "A3895G", - "A4305G", - "A4655G", - "C8012T", - "C8362T", - "C8834T", - "A9367T" - ] - } - }, - "name": "KC344481.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21932828588190184, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 2009.8205479452056, - 2009.8205479452056 - ], - "value": 2009.8205479452056 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: V39M; CP: G74S; nsP3: R364G, S403P", - "GRI Lineage Root": "B.0.2" - }, - "mutations": { - "6k": [ - "V39M" - ], - "CP": [ - "G74S" - ], - "nsP3": [ - "R364G", - "S403P" - ], - "nuc": [ - "C131T", - "G1436A", - "T3614C", - "A5121G", - "T5238C", - "T6098C", - "A6479G", - "A7551G", - "G7781A", - "A8902G", - "G9947A", - "C10786T", - "T11354G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344468.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21950799588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.5821917808219, - 2010.664383561644 - ], - "value": 2010.5896676779173 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2" - }, - "GRI Lineage Level 4": { - "value": "B.0.2" - }, - "GRI Lineage Level 5": { - "value": "B.0.2" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C11423T" - ] - }, - "labels": { - "GRI Lineage Root": "B.0.2.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344494.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21959504588190185, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.650684931507, - 2010.650684931507 - ], - "value": 2010.650684931507 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.2.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344495.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21959404588190184, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.650684931507, - 2010.650684931507 - ], - "value": 2010.650684931507 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.2.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344489.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21959404588190184, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.2.0" - } - } - } - ], - "name": "NODE_0000138", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999999995286 - }, - "entropy": 1.2448180587123819e-11, - "value": "Mexico" - }, - "div": 0.21959404588190184, - "num_date": { - "confidence": [ - 2010.6395942857114, - 2010.650684931507 - ], - "value": 2010.6492755438576 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999913 - }, - "entropy": -7.557088577026362e-13, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9999999868898642 - }, - "entropy": 2.724934142768068e-7, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.2.0" - } - } - } - ], - "name": "NODE_0000137", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999955291816 - }, - "entropy": 1.0030224178120182e-7, - "value": "Mexico" - }, - "div": 0.21950564588190186, - "num_date": { - "confidence": [ - 2010.5574895841748, - 2010.6343213500702 - ], - "value": 2010.5829129855465 - }, - "region": { - "confidence": { - "LA,C": 0.9999999998755894 - }, - "entropy": 3.0119758160674016e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9992282392563719 - }, - "entropy": 0.007489318322280897, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2" - }, - "GRI Lineage Level 4": { - "value": "B.0.2" - }, - "GRI Lineage Level 5": { - "value": "B.0.2" - } - } - } - ], - "name": "NODE_0000136", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999527213428 - }, - "entropy": 9.492038668858006e-7, - "value": "Mexico" - }, - "div": 0.21835278588190185, - "num_date": { - "confidence": [ - 2009.50819618041, - 2009.7088002730313 - ], - "value": 2009.6198769755447 - }, - "region": { - "confidence": { - "LA,C": 0.9999999987468648 - }, - "entropy": 2.7468655436196602e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1969": 0.0016129901766168213, - "2008": 0.044533177322166495, - "2009": 0.7860675853157219, - "2010": 0.13412256035938358 - }, - "entropy": 0.8490913107973861, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - } - ], - "name": "NODE_0000054", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999887113067757 - }, - "entropy": 0.00016601994862000722, - "value": "Mexico" - }, - "div": 0.21506581588190185, - "num_date": { - "confidence": [ - 2007.4341974734286, - 2007.862367627851 - ], - "value": 2007.6638205063275 - }, - "region": { - "confidence": { - "LA,C": 0.9999997936209004 - }, - "entropy": 0.0000034724764436529565, - "value": "LA,C" - }, - "year": { - "confidence": { - "1969": 0.007953614243314677, - "2008": 0.5997844711643502, - "2009": 0.17486893618324192, - "2010": 0.03730001756514992 - }, - "entropy": 1.7627798396956451, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T77C", - "T2177C", - "C3641T", - "T3674C", - "T8594C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S335P, E354A, S355L" - }, - "mutations": { - "nsP3": [ - "S335P", - "E354A", - "S355L" - ], - "nuc": [ - "C65T", - "T611C", - "T2552C", - "T4833C", - "T5034C", - "A5092C", - "C5095T", - "A5207G", - "T6170C", - "C6227T", - "T6254C", - "A6266C", - "G6854A", - "T10936C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP2: I431V, F599L; nsP3: A435V" - }, - "mutations": { - "nsP2": [ - "I431V", - "F599L" - ], - "nsP3": [ - "A435V" - ], - "nuc": [ - "A26C", - "C80T", - "T2540C", - "A2822T", - "A2940G", - "C3446A", - "C4694T", - "A5099G", - "C5204T", - "C5335T", - "G5387A", - "C5474T", - "T5645C", - "C6294T", - "C6368T", - "T7388C", - "T7786C", - "C7885T", - "C8062A", - "G8578A", - "T8695C", - "C9184T", - "C9904T", - "T10717A", - "T10777C", - "C11423T" - ] - } - }, - "name": "KC344451.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21852549588190184, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2008.5314207650274, - 2008.5314207650274 - ], - "value": 2008.5314207650274 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2008": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: S208T" - }, - "mutations": { - "E2": [ - "S208T" - ], - "nuc": [ - "T2453C", - "G2951A", - "G3302A", - "C3317T", - "G3380A", - "T3428C", - "T3747C", - "C4133T", - "G4190A", - "T4274A", - "C4784T", - "A4817G", - "T5174C", - "C5214T", - "G5906A", - "A6104G", - "T6404C", - "T6680C", - "C7184T", - "T7331C", - "C7448T", - "A7801G", - "T8080C", - "G8572A", - "T8641C", - "T9185A", - "T9466C", - "T10447C", - "T11275C", - "T11326C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344480.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21869556588190184, - "host": { - "value": "Culex taeniopus" - }, - "num_date": { - "confidence": [ - 2008.5314207650274, - 2008.5314207650274 - ], - "value": 2008.5314207650274 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2008": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C11423T" - ] - }, - "labels": { - "GRI Lineage Root": "B.0.1" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344453.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21861720588190184, - "host": { - "value": "Coquillettidia nigricans" - }, - "num_date": { - "confidence": [ - 2009.7191780821918, - 2009.7191780821918 - ], - "value": 2009.7191780821918 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344479.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21861680588190185, - "host": { - "value": "Mansonia titillans" - }, - "num_date": { - "confidence": [ - 2009.7191780821918, - 2009.7191780821918 - ], - "value": 2009.7191780821918 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "B.0.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344452.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21861680588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2009.7219178082191, - 2009.7219178082191 - ], - "value": 2009.7219178082191 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344478.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21861680588190185, - "host": { - "value": "Culex nigripalpus" - }, - "num_date": { - "confidence": [ - 2009.7191780821918, - 2009.7191780821918 - ], - "value": 2009.7191780821918 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.1.0" - } - } - } - ], - "name": "NODE_0000130", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999990780897 - }, - "entropy": 2.2125562682771357e-8, - "value": "Mexico" - }, - "div": 0.21861445588190184, - "num_date": { - "confidence": [ - 2009.705287923348, - 2009.7191780821918 - ], - "value": 2009.7190990329207 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741674 - }, - "entropy": 6.637586551627929e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2009": 0.999999194432084 - }, - "entropy": 0.000014909737298321032, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.1.0" - } - } - } - ], - "name": "NODE_0000086", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999990752881 - }, - "entropy": 2.2189324708094125e-8, - "value": "Mexico" - }, - "div": 0.21861445588190184, - "num_date": { - "confidence": [ - 2009.6893030870583, - 2009.7180957400178 - ], - "value": 2009.7120759826007 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741173 - }, - "entropy": 6.650003572092023e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2009": 0.9999946531392128 - }, - "entropy": 0.00007718260521155418, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.1" - } - } - } - ], - "name": "NODE_0000085", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999945161505 - }, - "entropy": 1.2191636431691157e-7, - "value": "Mexico" - }, - "div": 0.21861445588190184, - "num_date": { - "confidence": [ - 2009.654428713855, - 2009.7168556802926 - ], - "value": 2009.6977368895245 - }, - "region": { - "confidence": { - "LA,C": 0.9999999998476792 - }, - "entropy": 3.6575190697717575e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2009": 0.9990836519769202 - }, - "entropy": 0.008253127638537264, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.1" - } - } - } - ], - "name": "NODE_0000143", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999698291919 - }, - "entropy": 6.189341557525127e-7, - "value": "Mexico" - }, - "div": 0.21861445588190184, - "num_date": { - "confidence": [ - 2008.4691669021774, - 2008.5309547492766 - ], - "value": 2008.518501548787 - }, - "region": { - "confidence": { - "LA,C": 0.9999999992307226 - }, - "entropy": 1.7234741855169303e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "2008": 0.9881484472967716, - "2009": 0.009583205388574486 - }, - "entropy": 0.07858763240821975, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - } - ], - "name": "NODE_0000080", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999935620840452 - }, - "entropy": 0.00009827979261603007, - "value": "Mexico" - }, - "div": 0.21612890588190184, - "num_date": { - "confidence": [ - 2007.3209938485138, - 2007.7578487972228 - ], - "value": 2007.56801401989 - }, - "region": { - "confidence": { - "LA,C": 0.9999998875807944 - }, - "entropy": 0.0000019598037918556775, - "value": "LA,C" - }, - "year": { - "confidence": { - "2008": 0.9829699358874453, - "2009": 0.0049458169203675986 - }, - "entropy": 0.1421754030171638, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: K351R" - }, - "mutations": { - "nsP2": [ - "K351R" - ], - "nuc": [ - "A2701G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: V39L, V52A; E1: Y373F; nsP2: F599L", - "GRI Lineage Root": "B.0.3" - }, - "mutations": { - "6k": [ - "V39L", - "V52A" - ], - "E1": [ - "Y373F" - ], - "nsP2": [ - "F599L" - ], - "nuc": [ - "G16C", - "A25T", - "C29T", - "A31C", - "T32A", - "A44C", - "A95T", - "A98G", - "C107T", - "C110T", - "G113A", - "G143A", - "C149T", - "C161T", - "A230C", - "T248C", - "T263C", - "C266A", - "A275G", - "C281T", - "T311C", - "C606T", - "C638T", - "C671T", - "A674T", - "T678C", - "C798A", - "A800G", - "T804C", - "G812A", - "C815T", - "G827A", - "C830T", - "T833G", - "T836C", - "C840T", - "T848C", - "G854A", - "T863A", - "C902T", - "A926T", - "T929C", - "C986T", - "G992A", - "G995A", - "G1004A", - "C1022T", - "C1028T", - "G1040C", - "C1043T", - "G1049A", - "G1058A", - "A1073C", - "T1079A", - "G1112A", - "A1139C", - "A1142C", - "T1154C", - "T1160A", - "T1172C", - "A1178C", - "T1190C", - "C1191T", - "T1194C", - "A1235G", - "C1238T", - "A1241G", - "T2291C", - "G2297A", - "C3446A", - "C3677T", - "C4460T", - "A6236C", - "G6251A", - "G6269A", - "G6287A", - "C7193T", - "C7230T", - "T7475C", - "C8158T", - "C8374T", - "C9637T", - "A9943G", - "G9947T", - "T9987C", - "A9988C", - "T10960C", - "G10966T", - "A11098G", - "A11118T", - "T11119C", - "G11134T", - "G11149T", - "C11161T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: F232Y; nsP2: D656E; nsP3: S335P, G451R, L455M; nsP4: S596R, A601T, S604T" - }, - "mutations": { - "nsP1": [ - "F232Y" - ], - "nsP2": [ - "D656E" - ], - "nsP3": [ - "S335P", - "G451R", - "L455M" - ], - "nsP4": [ - "S596R", - "A601T", - "S604T" - ], - "nuc": [ - "C644T", - "C725T", - "T739A", - "T1007C", - "C1040T", - "T1151C", - "T1217C", - "T1802C", - "G3452T", - "T3476C", - "C3479A", - "T3617G", - "T3620A", - "C3623A", - "C3626T", - "C4628T", - "T4833C", - "T5034C", - "G5381A", - "G5382A", - "C5394A", - "T5399C", - "C5870T", - "C6204T", - "C6215T", - "A6218G", - "A6296C", - "G6299A", - "G6854A", - "T7490G", - "T7493C", - "G7496A", - "G7503A", - "T7508A", - "T7512A", - "C7514T", - "C7540T", - "G7544A", - "C8026A", - "C8032T", - "C8092T", - "A8095T", - "C8098T", - "T8260C", - "T8407C", - "T8408C", - "A8734C", - "C8743T", - "C8758G", - "T8776C", - "T8782C", - "A8785T", - "A8947G", - "G9937A", - "C9938T", - "G10963A" - ] - } - }, - "name": "KC344529.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Ecuador": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Ecuador" - }, - "div": 0.23064498588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1976.0013661202186, - 1976.3641841129054 - ], - "value": 1976.0013661202186 - }, - "place_of_collection": { - "value": "Ecuador" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1976": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1976" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.3" - }, - "GRI Lineage Level 3": { - "value": "B.0.3" - }, - "GRI Lineage Level 4": { - "value": "B.0.3" - }, - "GRI Lineage Level 5": { - "value": "B.0.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: D11E, E56D, F94Y; nsP3: S337N, T360A, G362A", - "GRI Lineage Root": "B.0.3.0" - }, - "mutations": { - "nsP1": [ - "D11E", - "E56D", - "F94Y" - ], - "nsP3": [ - "S337N", - "T360A", - "G362A" - ], - "nuc": [ - "C77A", - "T180C", - "A185T", - "A188G", - "T192C", - "G200A", - "A212C", - "T325A", - "T533C", - "T536C", - "C542T", - "G551A", - "T554C", - "T584A", - "C587A", - "C590A", - "T599C", - "G602A", - "G608A", - "G680A", - "T692C", - "C782A", - "A1088C", - "A1100C", - "G1109A", - "A2555G", - "C2558A", - "T2576C", - "T2579C", - "A2594T", - "G5039A", - "G5041A", - "A5109G", - "G5116C", - "T9952C", - "T9958G", - "T10000C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: S272C; E1: V430I, K440R; E3: T5A, M6V, V12I; nsP1: F232Y, V239I; nsP2: L599F, T778S; nsP3: S366P; nsP4: S596R, A601T, S604T" - }, - "mutations": { - "CP": [ - "S272C" - ], - "E1": [ - "V430I", - "K440R" - ], - "E3": [ - "T5A", - "M6V", - "V12I" - ], - "nsP1": [ - "F232Y", - "V239I" - ], - "nsP2": [ - "L599F", - "T778S" - ], - "nsP3": [ - "S366P" - ], - "nsP4": [ - "S596R", - "A601T", - "S604T" - ], - "nuc": [ - "A33T", - "T146C", - "A191G", - "T242C", - "C311T", - "T515C", - "A518G", - "T530C", - "A575C", - "T593C", - "A614T", - "A617C", - "T620C", - "C644T", - "C686T", - "G695T", - "G701A", - "A707G", - "G716C", - "C725T", - "T728C", - "A731G", - "G734A", - "T739A", - "T741C", - "A749C", - "C752A", - "G759A", - "T770A", - "A773C", - "A776T", - "T1007C", - "C1088T", - "T1091C", - "T1151C", - "T1217C", - "T1928C", - "C2291T", - "A2297G", - "C2537T", - "T2540C", - "A2546C", - "A2918G", - "A3137G", - "A3446C", - "C3494T", - "C3500T", - "C3503T", - "C3857T", - "A3981T", - "T4244G", - "T4625C", - "C4628T", - "T4833C", - "T5127C", - "C5147T", - "C5870T", - "T6170C", - "C6215T", - "A6218G", - "A6251G", - "A6269C", - "A6341G", - "T6869C", - "T6953C", - "A6956G", - "T6959G", - "A6974T", - "T7193C", - "C7475T", - "T7490G", - "T7493C", - "G7496A", - "G7503A", - "T7508A", - "T7512A", - "C7514T", - "C7540T", - "G7544A", - "C8098T", - "T8158C", - "G8371A", - "A8375T", - "G8383A", - "C8389A", - "G8392A", - "C8398T", - "A8399G", - "A8402G", - "G8404A", - "T8407C", - "T8408C", - "T8413C", - "G8420A", - "G8431T", - "C8509T", - "A8734C", - "C8758G", - "T8782C", - "A8947G", - "A9544G", - "G9937A", - "C9938T", - "G10963A", - "T10984C", - "G11098A", - "C11119T", - "T11134G", - "T11236A", - "G11278A", - "T11279C", - "A11281G", - "T11287C", - "G11288A", - "T11290A", - "A11319G", - "C11323T" - ] - } - }, - "name": "KC344531.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Ecuador": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Ecuador" - }, - "div": 0.24016896588190187, - "host": { - "value": "Culex (Melanoconion) sp." - }, - "num_date": { - "confidence": [ - 1975.0013698630137, - 1975.599474705684 - ], - "value": 1975.0013698630137 - }, - "place_of_collection": { - "value": "Ecuador" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1975": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1975" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.3" - }, - "GRI Lineage Level 3": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.3.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: S325A; nsP3: A331V, D399E, H401Y, H402R, S408N" - }, - "mutations": { - "E1": [ - "S325A" - ], - "nsP3": [ - "A331V", - "D399E", - "H401Y", - "H402R", - "S408N" - ], - "nuc": [ - "C28T", - "A320G", - "G344T", - "C578T", - "C791T", - "C953T", - "C1037T", - "C1052T", - "T1116C", - "C1175T", - "C1178T", - "A1196G", - "C1199A", - "A1260C", - "A1265C", - "T1274C", - "G1277A", - "C1281A", - "C1283A", - "G1289A", - "A1292C", - "G2600A", - "C2726T", - "C3410T", - "T3987C", - "T5018C", - "C5023T", - "T5228A", - "A5231G", - "C5232T", - "C5234T", - "A5236G", - "G5254A", - "C5255T", - "T5984G", - "G7175A", - "C8000T", - "C8356T", - "T8390C", - "C10204T", - "T10717G", - "T10948C", - "T10973G" - ] - } - }, - "name": "KC344530.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23783749588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1969.101095890411, - 1969.9986301369863 - ], - "value": 1969.9986301369863 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1969": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.3" - }, - "GRI Lineage Level 3": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.3.0" - } - } - } - ], - "name": "NODE_0000149", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.31799630555334846, - "Ecuador": 0.6238796944362363, - "Mexico": 0.057403622334204304 - }, - "entropy": 0.8295201582742722, - "value": "Ecuador" - }, - "div": 0.23182515588190186, - "num_date": { - "confidence": [ - 1969.6680723577738, - 1969.8830412022735 - ], - "value": 1969.857219516549 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993177917 - }, - "entropy": 1.5367541991065995e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.008417713983134949, - "1969": 0.8928425350431751, - "1975": 0.010644059797817858, - "1976": 0.0060596250101857775 - }, - "entropy": 0.7338948641090463, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.3" - }, - "GRI Lineage Level 3": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.3.0" - } - } - } - ], - "name": "NODE_0000148", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.23959711378677798, - "Ecuador": 0.6290282717276718, - "Mexico": 0.13011757789846218 - }, - "entropy": 0.9104936004616461, - "value": "Ecuador" - }, - "div": 0.22803097588190185, - "num_date": { - "confidence": [ - 1969.5377387086826, - 1969.7837578919646 - ], - "value": 1969.743914617329 - }, - "region": { - "confidence": { - "LA,C": 0.9999999977645805 - }, - "entropy": 4.770867104974451e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.017350985775541717, - "1969": 0.797442725947296, - "1975": 0.011989492009589679, - "1976": 0.012520046317203683 - }, - "entropy": 1.2561216632021874, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.3" - }, - "GRI Lineage Level 3": { - "value": "B.0.3" - }, - "GRI Lineage Level 4": { - "value": "B.0.3" - }, - "GRI Lineage Level 5": { - "value": "B.0.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S335P, E354A, S355L; nsP4: K93R", - "GRI Lineage Root": "B.0.0" - }, - "mutations": { - "nsP3": [ - "S335P", - "E354A", - "S355L" - ], - "nsP4": [ - "K93R" - ], - "nuc": [ - "C65T", - "T611C", - "T2453C", - "T2552C", - "C3230T", - "C3677T", - "T4043C", - "C4460T", - "T4833C", - "C4979T", - "T5034C", - "A5092C", - "C5095T", - "A5207G", - "A5980G", - "T6170C", - "C6227T", - "T6254C", - "A6266C", - "G6854A", - "C7230T", - "T7475C", - "C8000T", - "T10936C", - "T11326C", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C149T", - "T371C", - "C1367T", - "A1568G", - "C3458T", - "T4019C", - "C5642T", - "A5753G", - "T6518C", - "C6722T", - "G7762A", - "C8458T", - "G9793A", - "T11423C" - ] - } - }, - "name": "KC344450.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21833694588190183, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2008.5204918032787, - 2008.5204918032787 - ], - "value": 2008.5204918032787 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2008": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: N444S; nsP3: P296L" - }, - "mutations": { - "nsP1": [ - "N444S" - ], - "nsP3": [ - "P296L" - ], - "nuc": [ - "A31T", - "C506T", - "A617G", - "T657C", - "A1375G", - "T2103C", - "T2624C", - "T3230C", - "G3920A", - "C4170T", - "C4918T", - "A5201G", - "A6068G", - "A7154G", - "T9112C", - "G10705A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A8182G", - "C8356T", - "T8896C" - ] - } - }, - "name": "KC344499.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21856342588190183, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T8722C", - "A8737G", - "A8902G" - ] - }, - "labels": { - "GRI Lineage Root": "B.0.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A10426G" - ] - } - }, - "name": "KC344500.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21865276588190186, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344470.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21856609588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.5821917808219, - 2010.664383561644 - ], - "value": 2010.6492948423281 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344501.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21856643588190186, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C8026T" - ] - } - }, - "name": "KC344491.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21865277588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.6561643835616, - 2010.6561643835616 - ], - "value": 2010.6561643835616 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.0" - } - } - } - ], - "name": "NODE_0000153", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999999999997 - }, - "entropy": -9.923742216016877e-13, - "value": "Mexico" - }, - "div": 0.21856408588190185, - "num_date": { - "confidence": [ - 2010.6208751637648, - 2010.6514428273101 - ], - "value": 2010.6479232306765 - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.0000096801515677e-12, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9999999999774987 - }, - "entropy": 5.947107218493144e-10, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.0" - } - } - } - ], - "name": "NODE_0000152", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999897308494 - }, - "entropy": 2.2190611584771983e-7, - "value": "Mexico" - }, - "div": 0.21829775588190184, - "num_date": { - "confidence": [ - 2010.470354387961, - 2010.600817851393 - ], - "value": 2010.55665001587 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997171946 - }, - "entropy": 6.61831205580004e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9997812871122187 - }, - "entropy": 0.00253810053595152, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - } - ], - "name": "NODE_0000151", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999738172748 - }, - "entropy": 5.394741933346814e-7, - "value": "Mexico" - }, - "div": 0.21696812588190184, - "num_date": { - "confidence": [ - 2008.2922166516214, - 2008.4237745196895 - ], - "value": 2008.3654511560449 - }, - "region": { - "confidence": { - "LA,C": 0.9999999995856949 - }, - "entropy": 9.528770447575124e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2008": 0.4167805145680621, - "2009": 0.0016535502821338037, - "2010": 0.5643798488730573 - }, - "entropy": 0.833185390561467, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A31C", - "T1430C", - "C2954A", - "C4043T", - "T4979C", - "T7229C", - "A8182G", - "C8356T", - "A9544G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: G451R, I465K, V476A, A517S; nsP4: R93K, R118K" - }, - "mutations": { - "nsP3": [ - "G451R", - "I465K", - "V476A", - "A517S" - ], - "nsP4": [ - "R93K", - "R118K" - ], - "nuc": [ - "C1964T", - "C2549T", - "G5381A", - "G5382A", - "T5399C", - "T5425A", - "T5426A", - "T5441C", - "T5458C", - "G5471A", - "C5474T", - "G5580T", - "C5585T", - "C5603T", - "G5624A", - "A5702G", - "C5720T", - "C5735T", - "G5765A", - "C5792T", - "T5810C", - "T5831C", - "G5840A", - "C5870T", - "C5900A", - "T5963C", - "T5978C", - "G5980A", - "T5984G", - "T6011A", - "T6035C", - "G6055A", - "C6065T", - "C6074T", - "T6077C", - "A6131G", - "C6170T", - "A8548G", - "C8614T", - "C11036T", - "C11083T" - ] - } - }, - "name": "KC344493.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.22106658588190187, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6479452054793, - 2010.6479452054793 - ], - "value": 2010.6479452054793 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: S176G; nsP3: Q392H; nsP4: A113S" - }, - "mutations": { - "E2": [ - "S176G" - ], - "nsP3": [ - "Q392H" - ], - "nsP4": [ - "A113S" - ], - "nuc": [ - "C3026T", - "T3053C", - "T3230C", - "G5207T", - "A5954G", - "G6039T", - "G6101A", - "G6176A", - "C7172T", - "T8896C", - "A9089G", - "T11357C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T11423C" - ] - } - }, - "name": "KC344469.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21843397588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.5821917808219, - 2010.664383561644 - ], - "value": 2010.6282492621126 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "B.0.0.1" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344496.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.650684931507, - 2010.650684931507 - ], - "value": 2010.650684931507 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344497.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21834657588190187, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "B.0.0.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344492.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.6561643835616, - 2010.6561643835616 - ], - "value": 2010.6561643835616 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344498.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1.0" - } - } - } - ], - "name": "NODE_0000142", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999990780909 - }, - "entropy": 2.212553356800712e-8, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "num_date": { - "confidence": [ - 2010.6437908823948, - 2010.6534246575343 - ], - "value": 2010.6506058822358 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741676 - }, - "entropy": 6.637582133124283e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9999992459118734 - }, - "entropy": 0.00001411054659152988, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1.0" - } - } - } - ], - "name": "NODE_0000140", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999990776186 - }, - "entropy": 2.213628681496603e-8, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "num_date": { - "confidence": [ - 2010.6312074941798, - 2010.651824660274 - ], - "value": 2010.648520247159 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741589 - }, - "entropy": 6.639692368843271e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9999992434228329 - }, - "entropy": 0.000014153941146992272, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1" - } - } - } - ], - "name": "NODE_0000139", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.999999999076129 - }, - "entropy": 2.217017967569959e-8, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "num_date": { - "confidence": [ - 2010.6080877168217, - 2010.650684931507 - ], - "value": 2010.642363493533 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741321 - }, - "entropy": 6.646287058252274e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.999999207039126 - }, - "entropy": 0.000014761124199952914, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1" - } - } - } - ], - "name": "NODE_0000157", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999961646938 - }, - "entropy": 8.662565289458364e-8, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "num_date": { - "confidence": [ - 2010.506041857475, - 2010.6491409672337 - ], - "value": 2010.5820524204917 - }, - "region": { - "confidence": { - "LA,C": 0.9999999998932875 - }, - "entropy": 2.5994441835703575e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9999897359273485 - }, - "entropy": 0.00015542895404525224, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - } - ], - "name": "NODE_0000156", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999998703746776 - }, - "entropy": 0.0000024725523048743405, - "value": "Mexico" - }, - "div": 0.21734801588190186, - "num_date": { - "confidence": [ - 2009.5656696751787, - 2009.9401956358365 - ], - "value": 2009.7578996138673 - }, - "region": { - "confidence": { - "LA,C": 0.9999999965188557 - }, - "entropy": 7.275980138804333e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "2008": 0.004126396556826417, - "2010": 0.9937434379290114 - }, - "entropy": 0.05000346493312126, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - } - ], - "name": "NODE_0000150", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999970227933055 - }, - "entropy": 0.00004762631543488907, - "value": "Mexico" - }, - "div": 0.21676630588190185, - "num_date": { - "confidence": [ - 2008.2027342339259, - 2008.3905026623945 - ], - "value": 2008.2997342858102 - }, - "region": { - "confidence": { - "LA,C": 0.9999999634196421 - }, - "entropy": 6.78763415905463e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1969": 0.0017374519309956591, - "2008": 0.3537003838391207, - "2009": 0.0031128725149359923, - "2010": 0.6039917939546123 - }, - "entropy": 0.9658265792778339, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - } - ], - "name": "NODE_0000147", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.012768866835803057, - "Ecuador": 0.03574816432262148, - "Mexico": 0.9506148492723793 - }, - "entropy": 0.23053678840378775, - "value": "Mexico" - }, - "div": 0.21661387588190184, - "num_date": { - "confidence": [ - 1969.0507916383733, - 1969.3345512800595 - ], - "value": 1969.208038934751 - }, - "region": { - "confidence": { - "LA,C": 0.9999999856064751 - }, - "entropy": 2.804189617566792e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.015745398464465023, - "1967": 0.04282584546808807, - "1969": 0.5887814947091095, - "1976": 0.015167263969719456 - }, - "entropy": 2.210702856054782, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - } - ], - "name": "NODE_0000141", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.0024079964061151744, - "Ecuador": 0.007148096870096242, - "Mexico": 0.9897978540196256 - }, - "entropy": 0.06524183611340129, - "value": "Mexico" - }, - "div": 0.21612890588190184, - "num_date": { - "confidence": [ - 1969.0151160724463, - 1969.271472808499 - ], - "value": 1969.1577159806 - }, - "region": { - "confidence": { - "LA,C": 0.9999999934845221 - }, - "entropy": 1.3198406754675585e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.019252443357140523, - "1967": 0.052864901674799424, - "1969": 0.5257767438502797, - "1976": 0.01578041665994767 - }, - "entropy": 2.455785133424669, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - } - ], - "name": "NODE_0000135", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.001137876245571191, - "Ecuador": 0.003459008666705984, - "Mexico": 0.994667500103125 - }, - "entropy": 0.038296879821586034, - "value": "Mexico" - }, - "div": 0.21506581588190185, - "num_date": { - "confidence": [ - 1968.871607547879, - 1969.16159123594 - ], - "value": 1968.9869414234608 - }, - "region": { - "confidence": { - "LA,C": 0.999999988929501 - }, - "entropy": 2.1813435503649227e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.02284907478328862, - "1967": 0.06340336970350145, - "1968": 0.016488280731780738, - "1969": 0.4694698664817801 - }, - "entropy": 2.6577722865006765, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - } - ], - "name": "NODE_0000134", - "node_attrs": { - "country": { - "confidence": { - "Ecuador": 0.002910763817913837, - "Mexico": 0.9951475979803416 - }, - "entropy": 0.03573431118399609, - "value": "Mexico" - }, - "div": 0.21481596588190185, - "num_date": { - "confidence": [ - 1968.843585769326, - 1969.1198168102276 - ], - "value": 1968.9666736674328 - }, - "region": { - "confidence": { - "LA,C": 0.9999999091352234 - }, - "entropy": 0.0000016029701590667883, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.02657607122420602, - "1967": 0.07458143841716175, - "1968": 0.017961291118707506, - "1969": 0.41911026452258643 - }, - "entropy": 2.8234764624300768, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - } - ], - "name": "NODE_0000133", - "node_attrs": { - "country": { - "confidence": { - "Belize": 0.017278799036222856, - "Mexico": 0.981766388591396 - }, - "entropy": 0.096289385895311, - "value": "Mexico" - }, - "div": 0.20728567588190186, - "num_date": { - "confidence": [ - 1965.3479134870463, - 1965.9980038840959 - ], - "value": 1965.7082855716064 - }, - "region": { - "confidence": { - "LA,C": 0.9999999687765324 - }, - "entropy": 5.841572910291818e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.15189149641174485, - "1967": 0.5316018612449214, - "1968": 0.014897235116814926, - "1969": 0.03990761298558748 - }, - "entropy": 2.152473779696706, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - } - ], - "name": "NODE_0000126", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999426941340266 - }, - "entropy": 0.0006632782345389808, - "value": "Mexico" - }, - "div": 0.20696536588190187, - "num_date": { - "confidence": [ - 1963.3633425279415, - 1963.4619611988417 - ], - "value": 1963.4193753904497 - }, - "region": { - "confidence": { - "LA,C": 0.9999999989069569 - }, - "entropy": 2.4109963403377197e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.7597335934618381, - "1967": 0.17495256215989283, - "1968": 0.005185568625218611, - "1969": 0.0033451130886555627 - }, - "entropy": 0.9367184058981766, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - } - ], - "name": "NODE_0000125", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.005001926876928662, - "Mexico": 0.9946550907880812 - }, - "entropy": 0.0349059813440002, - "value": "Mexico" - }, - "div": 0.19810603588190187, - "num_date": { - "confidence": [ - 1962.529802397054, - 1962.81160518291 - ], - "value": 1962.6851893143028 - }, - "region": { - "confidence": { - "LA,C": 0.9999999950121353 - }, - "entropy": 1.0244911037116277e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.47042968496708737, - "1967": 0.2778883613370869, - "1968": 0.02067954548131166, - "1969": 0.008282797773926114 - }, - "entropy": 2.0056714386579046, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - } - ], - "name": "NODE_0000096", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.0010039085102563489, - "Guatemala": 0.20825033966500198, - "Mexico": 0.7716746879217425, - "Panama": 0.016241714999490547 - }, - "entropy": 0.623543600457926, - "value": "Mexico" - }, - "div": 0.19423401588190187, - "num_date": { - "confidence": [ - 1962.0495449420391, - 1962.4575589501503 - ], - "value": 1962.214305210564 - }, - "region": { - "confidence": { - "LA,C": 0.9999999843720682 - }, - "entropy": 3.0301980084117745e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.3624599346010334, - "1967": 0.27429437491288167, - "1968": 0.03202579853469719, - "1969": 0.010912124647397353 - }, - "entropy": 2.4562920996209723, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - } - ], - "name": "NODE_0000094", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.01472524750140437, - "Guatemala": 0.0902079424313396, - "Mexico": 0.32462172078741464, - "Panama": 0.5319318785214361 - }, - "entropy": 1.1928782997558895, - "value": "Panama" - }, - "div": 0.16288492588190187, - "num_date": { - "confidence": [ - 1955.3756793123353, - 1956.5295953082555 - ], - "value": 1956.083311360622 - }, - "region": { - "confidence": { - "LA,C": 0.9999902631067242 - }, - "entropy": 0.00012619157745360232, - "value": "LA,C" - }, - "year": { - "confidence": { - "1961": 0.03989378942539785, - "1962": 0.04044334342935708, - "1963": 0.03125134093365544, - "1967": 0.025562913860332857 - }, - "entropy": 3.8523385700947266, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: Y4F, A42T, K66P, E74Q, N75K, Q78G, N79Q, K91A, H97N, E100A, A108T, D133E, S183N; E1: P14S, I47V, T65S, S69T, Q120E, T142I, T143V, I145T, H196Q, A197P, A205S, I208V, P248A; E2: I93V, P150A, T177S, L179V, M181L, H187P, V196A, T223K, D224E, S247A, D249A, E263D, A264G, D301A, G302D, Q336K, I380V; E3: S17A, V50A, L51V, K58R; nsP1: E56D, K85R, A98T, I133M, K425R, V431I, S458N, L471M, N492C, K501R; nsP2: R34K, K138R, K351Q, D441N, L493M, K505E, T612L, T615N, H619Q, A624S, M641L, T642S, E653D, L671V, V679I, V750S; nsP3: R102K, A115S, M122T, V155A, E169D, M218I, I227V, L237M, H312Q, E322A, A331V, E351G, T356P, A359V, M384L, E387D, H394L, F407S, V426I, I435M, K438E, K450R, L452M, V471H, K473A, S524T; nsP4: Q58P, T77A, A108S, V127M, Y240F, P397A, N456G, F562L, I582V, E593K" - }, - "mutations": { - "CP": [ - "Y4F", - "A42T", - "K66P", - "E74Q", - "N75K", - "Q78G", - "N79Q", - "K91A", - "H97N", - "E100A", - "A108T", - "D133E", - "S183N" - ], - "E1": [ - "P14S", - "I47V", - "T65S", - "S69T", - "Q120E", - "T142I", - "T143V", - "I145T", - "H196Q", - "A197P", - "A205S", - "I208V", - "P248A" - ], - "E2": [ - "I93V", - "P150A", - "T177S", - "L179V", - "M181L", - "H187P", - "V196A", - "T223K", - "D224E", - "S247A", - "D249A", - "E263D", - "A264G", - "D301A", - "G302D", - "Q336K", - "I380V" - ], - "E3": [ - "S17A", - "V50A", - "L51V", - "K58R" - ], - "nsP1": [ - "E56D", - "K85R", - "A98T", - "I133M", - "K425R", - "V431I", - "S458N", - "L471M", - "N492C", - "K501R" - ], - "nsP2": [ - "R34K", - "K138R", - "K351Q", - "D441N", - "L493M", - "K505E", - "T612L", - "T615N", - "H619Q", - "A624S", - "M641L", - "T642S", - "E653D", - "L671V", - "V679I", - "V750S" - ], - "nsP3": [ - "R102K", - "A115S", - "M122T", - "V155A", - "E169D", - "M218I", - "I227V", - "L237M", - "H312Q", - "E322A", - "A331V", - "E351G", - "T356P", - "A359V", - "M384L", - "E387D", - "H394L", - "F407S", - "V426I", - "I435M", - "K438E", - "K450R", - "L452M", - "V471H", - "K473A", - "S524T" - ], - "nsP4": [ - "Q58P", - "T77A", - "A108S", - "V127M", - "Y240F", - "P397A", - "N456G", - "F562L", - "I582V", - "E593K" - ], - "nuc": [ - "A33T", - "A212C", - "T221C", - "A230T", - "A298G", - "G336A", - "C365A", - "A368T", - "G389A", - "A404C", - "T443G", - "T473C", - "T530C", - "C626A", - "C725T", - "G773T", - "T779G", - "C935T", - "G944T", - "C959T", - "C1005T", - "T1007G", - "C1061T", - "G1148C", - "T1169C", - "A1193T", - "A1196G", - "C1220T", - "A1232G", - "A1259G", - "A1262G", - "G1268A", - "A1275C", - "C1281A", - "G1289A", - "A1292C", - "A1318G", - "G1335A", - "G1337T", - "T1391A", - "A1406G", - "G1417A", - "T1455A", - "A1475G", - "A1478G", - "G1487C", - "A1499G", - "A1518T", - "A1519G", - "A1545C", - "A1546G", - "G1547T", - "G1550A", - "T1572C", - "T1586A", - "A1601G", - "G1634A", - "A1649C", - "C1655A", - "A1658G", - "G1670T", - "G1673C", - "C1679A", - "C1685T", - "C1718T", - "A1739G", - "C1749A", - "G1750A", - "A1778T", - "G1787A", - "C1796A", - "C1802A", - "A1815C", - "G1838A", - "G1871A", - "A1901T", - "C1904G", - "G1910A", - "G2003A", - "G2015T", - "A2030G", - "T2033C", - "A2062G", - "G2105T", - "G2144C", - "C2153T", - "A2174T", - "G2285A", - "C2343A", - "G2363C", - "A2384C", - "C2399T", - "A2417T", - "T2442C", - "G2444C", - "G2465A", - "C2504T", - "T2540C", - "A2543G", - "A2580C", - "G2609C", - "C2612A", - "C2616T", - "C2642G", - "C2645G", - "A2669G", - "A2700C", - "C2745T", - "T2768C", - "A2798G", - "G2807T", - "C2816G", - "A2826C", - "G2843A", - "T2879C", - "G2906T", - "T2921A", - "A2927C", - "C2948A", - "A2969G", - "G2970A", - "A2990G", - "A3068G", - "C3116A", - "T3126A", - "A3134T", - "A3162G", - "G3173A", - "C3213A", - "A3227C", - "T3231C", - "A3239C", - "C3293T", - "A3305G", - "C3326T", - "G3341T", - "G3380T", - "A3467G", - "A3483C", - "C3484T", - "C3493A", - "T3506G", - "G3519T", - "A3570T", - "A3573T", - "G3587A", - "C3605A", - "A3608C", - "C3660G", - "G3684A", - "A3698T", - "C3779T", - "A3782G", - "C3815T", - "A3854T", - "G3884A", - "G3897T", - "T3898C", - "G3905T", - "C3959G", - "C3980A", - "C4061T", - "T4070G", - "G4076C", - "C4091A", - "A4118T", - "T4139G", - "A4178G", - "A4235C", - "G4259T", - "A4262G", - "G4268T", - "C4284T", - "G4295T", - "T4322C", - "G4336A", - "G4343A", - "C4356T", - "G4374T", - "T4396C", - "G4397C", - "A4406G", - "G4448A", - "A4463G", - "T4495C", - "A4538C", - "C4547G", - "T4574G", - "C4592T", - "A4610G", - "C4647T", - "G4676C", - "G4685A", - "C4697T", - "A4710G", - "T4724C", - "T4740A", - "G4751C", - "T4778A", - "C4860A", - "C4931T", - "A4958G", - "C4967G", - "T4982A", - "A4996C", - "T5009A", - "C5023T", - "A5083G", - "A5097C", - "C5107T", - "A5114G", - "A5135G", - "A5168G", - "C5171T", - "A5181T", - "A5192C", - "G5201C", - "A5207G", - "A5212T", - "C5213G", - "G5219C", - "A5231T", - "A5237G", - "T5240G", - "G5246T", - "T5251C", - "A5273T", - "G5307A", - "G5309C", - "A5336G", - "A5343G", - "A5380G", - "T5385A", - "A5400C", - "T5405G", - "A5414G", - "C5423A", - "T5426A", - "A5438T", - "G5442C", - "T5443A", - "G5447C", - "A5448G", - "A5449C", - "A5450T", - "G5453A", - "G5462A", - "G5465A", - "G5510T", - "T5601A", - "G5612C", - "C5642T", - "G5648A", - "C5663G", - "C5669A", - "A5762G", - "T5771C", - "A5861G", - "C5867T", - "A5875C", - "A5876T", - "A5931G", - "A5937C", - "A5939T", - "A5969G", - "T5972A", - "T6000C", - "C6005T", - "G6024T", - "C6035T", - "A6038T", - "G6041T", - "G6080C", - "G6081A", - "C6137T", - "C6143T", - "G6155T", - "A6230T", - "C6245A", - "T6248A", - "G6284C", - "A6293C", - "C6317T", - "T6323C", - "C6342T", - "C6359G", - "A6374G", - "A6421T", - "C6422T", - "A6440G", - "T6441C", - "A6443T", - "T6461A", - "G6488A", - "G6494T", - "G6503T", - "T6515A", - "C6527T", - "C6531T", - "C6545A", - "T6566C", - "A6572G", - "T6656A", - "C6693A", - "A6785G", - "C6824T", - "C6833T", - "G6845C", - "G6857C", - "A6860G", - "C6861T", - "C6891G", - "A6908G", - "T6923C", - "C6941A", - "C6944T", - "A6947G", - "C7004A", - "C7053A", - "G7064A", - "A7068G", - "A7069G", - "C7070A", - "C7139A", - "C7193G", - "C7230T", - "A7256G", - "A7304T", - "C7341A", - "A7343G", - "G7355A", - "T7386C", - "A7446G", - "G7479A", - "C7514T", - "G7539A", - "A7572T", - "T7624C", - "T7627G", - "A7630C", - "A7633G", - "A7636C", - "G7681A", - "G7685A", - "A7757C", - "A7758C", - "G7781C", - "T7786A", - "C7793G", - "A7794G", - "G7795C", - "A7796C", - "T7798A", - "A7832G", - "A7833C", - "G7834T", - "C7850A", - "A7860C", - "C7870A", - "G7883A", - "A7900C", - "C7960A", - "A7966G", - "C8053A", - "G8068A", - "G8086T", - "C8092T", - "G8109A", - "A8119C", - "A8131G", - "C8170T", - "A8198C", - "G8200T", - "T8236C", - "C8242A", - "A8251T", - "C8260T", - "A8263G", - "G8320T", - "C8323A", - "A8344G", - "G8347A", - "C8422G", - "T8435G", - "C8461A", - "T8476C", - "T8535C", - "C8537G", - "G8539T", - "C8551A", - "A8559G", - "G8569C", - "G8605T", - "G8617A", - "C8650T", - "T8653A", - "C8699A", - "C8731T", - "A8740C", - "A8755G", - "C8830G", - "A8840G", - "A8842G", - "C8857T", - "A8878G", - "C8941G", - "G8977C", - "C9011G", - "G9022C", - "C9079A", - "C9093G", - "C9098G", - "A9104T", - "A9123C", - "T9150C", - "C9231A", - "A9232G", - "T9235G", - "G9244A", - "C9250T", - "T9302G", - "A9309C", - "G9328A", - "T9331C", - "A9334C", - "A9352C", - "C9354G", - "T9415A", - "G9463T", - "A9465C", - "G9468A", - "A9472G", - "A9475T", - "C9505A", - "C9569A", - "C9631A", - "A9691C", - "G9697A", - "A9701G", - "C9740A", - "G9769A", - "C9772A", - "G9775T", - "C9782A", - "T9790G", - "G9793T", - "A9802T", - "G9817C", - "A9827C", - "A9847G", - "C9851T", - "G9877A", - "G9940C", - "T9952C", - "C10040T", - "A10081C", - "C10102A", - "T10117A", - "A10139G", - "A10144C", - "C10174A", - "A10193T", - "T10205A", - "A10249G", - "G10252T", - "A10294T", - "G10306A", - "G10309C", - "G10318C", - "C10358G", - "G10360A", - "C10387G", - "C10393G", - "A10423T", - "C10425T", - "A10427G", - "C10428T", - "A10429G", - "A10432C", - "T10434C", - "C10462G", - "T10561C", - "T10588A", - "G10589C", - "G10597A", - "C10609A", - "G10613T", - "A10622G", - "C10627A", - "C10642T", - "C10693G", - "C10738T", - "C10742G", - "A10744T", - "G10774A", - "T10783A", - "G10819A", - "A10822G", - "G10888T", - "T10894G", - "G10909T", - "C11005G", - "G11017A", - "G11038A", - "A11062T", - "T11116A", - "C11179T", - "G11188A", - "T11279C", - "T11296C", - "A11328G", - "A11372G", - "A11380T", - "A11416T", - "C11419G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: I20T, V39M; CP: P6S, D55G, P66S, G80R, Q86E, P98L, A100T, I136V, K218R, K223R; E1: S9N, A59T, T82A, V103I, D112E, A116V, E120A, F132L, I142T, S205L, A343S, A352V, Y373F, I430L, H441R; E2: I20V, S57P, G63S, D69N, H71Y, G183S, S184G, P187S, G203S, K206T, T213K, A214T, D263N, N291Y, Q299E, A315S, T320S, E323A, T357V, L369T, V382I, F389L, K391R, V394A, R407K, A418T, T420S; E3: V36A, E48K, K52T; nsP1: M133V, R256K, T337I, M417L, R424K, T466N, I487V, Q488H, V500A, A508V; nsP2: K121R, T122V, V123I, K143R, T153A, A215T, R328K, D352G, I375V, I446M, A451T, N499S, Y503H, V538I, T647S, K767R, R788G; nsP3: I20V, A62T, V104I, K118R, A155V, A228V, A344V, T349A, G351R, T352E, P353M, L358N, V359R, D362S, A363E, R365S, T368V, I372V, I373N, D380G, L384S, T390I, H391R, A398V, G402R, S407F, G432E, T436I, S441A, A442T, N445D, F448S, M452V, L455M, V465I, N468K, T478I, P479Q, P483L, A486F, S487N, T495G, G498D, I503T, T512V, S520P, V536E; nsP4: R68K, V151I, E238K, V253I, L387M, I580V, T586A" - }, - "mutations": { - "6k": [ - "I20T", - "V39M" - ], - "CP": [ - "P6S", - "D55G", - "P66S", - "G80R", - "Q86E", - "P98L", - "A100T", - "I136V", - "K218R", - "K223R" - ], - "E1": [ - "S9N", - "A59T", - "T82A", - "V103I", - "D112E", - "A116V", - "E120A", - "F132L", - "I142T", - "S205L", - "A343S", - "A352V", - "Y373F", - "I430L", - "H441R" - ], - "E2": [ - "I20V", - "S57P", - "G63S", - "D69N", - "H71Y", - "G183S", - "S184G", - "P187S", - "G203S", - "K206T", - "T213K", - "A214T", - "D263N", - "N291Y", - "Q299E", - "A315S", - "T320S", - "E323A", - "T357V", - "L369T", - "V382I", - "F389L", - "K391R", - "V394A", - "R407K", - "A418T", - "T420S" - ], - "E3": [ - "V36A", - "E48K", - "K52T" - ], - "nsP1": [ - "M133V", - "R256K", - "T337I", - "M417L", - "R424K", - "T466N", - "I487V", - "Q488H", - "V500A", - "A508V" - ], - "nsP2": [ - "K121R", - "T122V", - "V123I", - "K143R", - "T153A", - "A215T", - "R328K", - "D352G", - "I375V", - "I446M", - "A451T", - "N499S", - "Y503H", - "V538I", - "T647S", - "K767R", - "R788G" - ], - "nsP3": [ - "I20V", - "A62T", - "V104I", - "K118R", - "A155V", - "A228V", - "A344V", - "T349A", - "G351R", - "T352E", - "P353M", - "L358N", - "V359R", - "D362S", - "A363E", - "R365S", - "T368V", - "I372V", - "I373N", - "D380G", - "L384S", - "T390I", - "H391R", - "A398V", - "G402R", - "S407F", - "G432E", - "T436I", - "S441A", - "A442T", - "N445D", - "F448S", - "M452V", - "L455M", - "V465I", - "N468K", - "T478I", - "P479Q", - "P483L", - "A486F", - "S487N", - "T495G", - "G498D", - "I503T", - "T512V", - "S520P", - "V536E" - ], - "nsP4": [ - "R68K", - "V151I", - "E238K", - "V253I", - "L387M", - "I580V", - "T586A" - ], - "nuc": [ - "A31C", - "T32C", - "C35A", - "A38G", - "C80T", - "C83T", - "C131T", - "A191G", - "C192T", - "T242C", - "T266A", - "G275A", - "T278C", - "T290C", - "T302C", - "G305A", - "A308G", - "T311C", - "T332C", - "A335T", - "C371T", - "G374A", - "T378C", - "T422G", - "T440C", - "A441G", - "C458T", - "C473T", - "A482G", - "T491A", - "A509G", - "C530T", - "C536T", - "C545T", - "A551G", - "C560T", - "C575T", - "T578C", - "C584T", - "C605T", - "T611A", - "A623T", - "A626G", - "C638T", - "T657C", - "A659C", - "T668A", - "C671T", - "A680G", - "T710C", - "T740C", - "G779A", - "C785T", - "G800A", - "C807T", - "G811A", - "A863G", - "T872C", - "T878A", - "C920T", - "A926T", - "C986T", - "G1034A", - "C1037T", - "G1040A", - "G1046A", - "C1054T", - "G1100A", - "G1109T", - "A1112G", - "C1119T", - "G1136A", - "C1160T", - "A1166G", - "C1169T", - "T1175C", - "C1178A", - "T1190C", - "A1214G", - "T1220C", - "G1241A", - "A1265G", - "A1271T", - "A1293T", - "G1298A", - "T1310C", - "G1315A", - "A1331G", - "C1346T", - "A1349C", - "T1352C", - "C1361T", - "C1364T", - "C1367T", - "C1376T", - "C1379T", - "C1388T", - "C1394T", - "A1409T", - "A1421G", - "C1441A", - "C1442T", - "A1454G", - "C1469T", - "T1490C", - "C1502T", - "A1503G", - "A1508C", - "A1523G", - "T1543C", - "C1544T", - "T1547C", - "C1553A", - "C1565G", - "C1567T", - "A1586G", - "T1589C", - "T1592C", - "C1608T", - "T1626C", - "A1637G", - "T1643C", - "G1646A", - "T1667A", - "G1676A", - "C1688T", - "T1694C", - "C1700A", - "C1706T", - "T1718C", - "C1721T", - "T1733C", - "A1736G", - "T1742C", - "A1745G", - "C1748T", - "G1757A", - "C1761T", - "T1766G", - "T1772C", - "T1778C", - "C1779T", - "C1781G", - "G1799A", - "A1820G", - "T1826C", - "T1829C", - "C1832G", - "C1841G", - "C1844T", - "G1859C", - "G1862A", - "A1877T", - "C1883T", - "C1892T", - "T1913C", - "C1931T", - "C1961T", - "T1964C", - "A1979G", - "A1982G", - "C1986T", - "C1991T", - "T2006C", - "A2011G", - "A2013G", - "C2014T", - "G2016A", - "C2024T", - "C2033T", - "C2036T", - "C2045T", - "C2054T", - "G2063A", - "C2072T", - "A2077G", - "T2105A", - "A2106G", - "A2108C", - "T2126G", - "C2129A", - "C2147T", - "T2153C", - "C2154T", - "A2159G", - "A2162G", - "G2168A", - "C2171T", - "T2177C", - "A2189G", - "A2216G", - "C2222T", - "G2225A", - "C2234T", - "C2243T", - "C2249T", - "A2255G", - "T2261C", - "G2270A", - "A2282G", - "G2292A", - "C2328T", - "G2330A", - "T2348C", - "A2357G", - "C2394T", - "G2396A", - "T2399C", - "T2402C", - "C2405T", - "A2408G", - "T2411A", - "T2417C", - "T2420C", - "T2432C", - "C2444T", - "C2453T", - "A2457C", - "T2462A", - "A2471T", - "G2474A", - "C2480T", - "T2486C", - "A2489G", - "C2501T", - "T2504C", - "C2519T", - "T2531C", - "C2537T", - "G2555A", - "C2558T", - "C2561T", - "T2579C", - "T2600C", - "G2603T", - "C2615T", - "T2616C", - "A2630G", - "G2632A", - "A2633G", - "A2639G", - "G2645A", - "G2651A", - "T2660C", - "T2666C", - "T2672A", - "T2681C", - "T2687C", - "A2704G", - "C2711T", - "T2714C", - "C2717T", - "T2723C", - "C2759T", - "A2772G", - "T2786A", - "T2792C", - "C2799T", - "C2804A", - "T2807C", - "C2849T", - "C2850T", - "A2870G", - "C2879T", - "G2888A", - "T2906C", - "A2921G", - "C2922T", - "C2927T", - "A2936C", - "C2949T", - "C2957T", - "G2960A", - "T2966A", - "G2969T", - "C2975T", - "A2987G", - "G3000A", - "C3017T", - "C3044T", - "C3074T", - "T3080C", - "T3093C", - "C3125T", - "C3131T", - "T3134C", - "A3145G", - "T3149C", - "T3155C", - "T3156C", - "T3158C", - "C3161T", - "C3170T", - "T3176C", - "G3188A", - "A3194G", - "C3204T", - "G3215A", - "T3221C", - "C3231T", - "C3236T", - "A3245T", - "A3254G", - "G3261A", - "T3275C", - "T3281C", - "T3284C", - "T3296C", - "C3311T", - "C3321T", - "A3329G", - "C3338T", - "T3341C", - "G3344A", - "C3347T", - "T3371C", - "A3374T", - "A3377G", - "C3383T", - "T3410C", - "G3419A", - "T3425C", - "T3428C", - "T3431C", - "G3434A", - "T3443C", - "C3444T", - "C3458T", - "C3465T", - "T3477C", - "T3491C", - "C3500T", - "A3503G", - "T3518A", - "C3527T", - "A3545G", - "T3548C", - "G3566A", - "G3569A", - "C3578T", - "A3588T", - "T3593C", - "T3614C", - "T3641C", - "A3644G", - "T3647C", - "A3653T", - "G3662A", - "A3668G", - "C3671T", - "C3677A", - "T3683C", - "T3698C", - "A3701G", - "C3710T", - "T3728C", - "C3737T", - "T3743C", - "G3746A", - "T3756C", - "T3773C", - "T3779C", - "C3791A", - "A3794T", - "C3800T", - "C3803T", - "T3815C", - "T3818C", - "C3821T", - "G3830A", - "A3839G", - "C3845T", - "T3854C", - "C3861A", - "A3902G", - "G3923A", - "G3938A", - "A3949G", - "C3953A", - "T3956C", - "T3968C", - "T3977C", - "T3983G", - "C3986A", - "C3992T", - "C3998T", - "T4001C", - "A4011G", - "C4019T", - "A4028G", - "C4037T", - "A4040G", - "T4046C", - "A4055C", - "T4061C", - "C4088T", - "A4089G", - "A4091G", - "T4100C", - "T4118C", - "A4124C", - "G4127A", - "G4148A", - "C4154T", - "A4160G", - "G4187A", - "A4193G", - "C4200T", - "C4205T", - "T4211C", - "G4215A", - "T4223C", - "C4226T", - "T4229C", - "T4232C", - "C4235T", - "C4247T", - "T4259C", - "G4262T", - "A4265G", - "T4284C", - "A4289G", - "G4292A", - "C4307T", - "T4310A", - "T4325C", - "A4340G", - "G4341A", - "A4343T", - "G4346A", - "T4356C", - "C4361T", - "A4384G", - "C4392T", - "A4394G", - "A4400G", - "T4404C", - "C4409T", - "T4424C", - "C4430T", - "T4445C", - "A4461C", - "T4484C", - "A4493G", - "C4495T", - "A4511G", - "C4535T", - "C4538T", - "C4541T", - "T4544G", - "G4547A", - "A4565G", - "C4569T", - "G4571A", - "G4589A", - "T4592C", - "T4595C", - "T4596C", - "G4598A", - "T4601C", - "A4622C", - "T4625C", - "T4628C", - "C4640T", - "T4646C", - "T4647C", - "C4658A", - "C4667T", - "G4679A", - "T4682C", - "A4688T", - "T4694C", - "C4700T", - "T4709C", - "T4712G", - "C4714T", - "G4721A", - "A4733G", - "A4736C", - "T4745C", - "C4748T", - "C4751T", - "C4769T", - "T4772C", - "C4790T", - "A4802G", - "C4808T", - "C4838T", - "T4847A", - "A4862G", - "A4865G", - "A4874G", - "A4883G", - "T4886C", - "A4889C", - "A4901G", - "A4910G", - "C4913T", - "T4916C", - "A4919G", - "T4920C", - "T4931C", - "C4937T", - "T4943C", - "C4979T", - "G4997A", - "T5003C", - "A5009G", - "C5062T", - "A5076G", - "A5078G", - "G5081A", - "G5082A", - "A5085G", - "C5086A", - "C5088A", - "C5089T", - "T5090G", - "A5096G", - "C5103A", - "T5104A", - "T5105C", - "G5106A", - "T5107G", - "A5108G", - "C5111T", - "G5115A", - "A5116G", - "T5117C", - "C5119A", - "A5120G", - "G5126T", - "A5133G", - "C5134T", - "G5144A", - "A5145G", - "T5149A", - "C5150T", - "G5159A", - "A5165G", - "A5170G", - "T5171C", - "T5174C", - "T5182C", - "G5198T", - "C5200T", - "A5203G", - "C5204G", - "A5216G", - "C5219T", - "C5224T", - "A5225G", - "C5228T", - "T5231C", - "G5235A", - "G5240A", - "T5246C", - "A5249G", - "C5251T", - "C5261T", - "C5282T", - "T5291C", - "C5297T", - "C5318T", - "C5319T", - "G5326A", - "A5327G", - "C5338T", - "C5342T", - "A5348T", - "T5352G", - "A5354C", - "G5355A", - "A5357G", - "A5364G", - "T5374C", - "G5381A", - "C5384T", - "A5385G", - "C5394A", - "T5411A", - "T5417C", - "C5418A", - "A5420G", - "G5424A", - "C5429T", - "C5435A", - "T5438C", - "T5444C", - "C5447T", - "C5464T", - "C5467A", - "C5479T", - "G5487T", - "C5488T", - "C5489T", - "G5491A", - "C5492T", - "T5501C", - "T5510C", - "C5513T", - "A5514G", - "C5515G", - "G5519A", - "G5524A", - "C5525T", - "G5528A", - "T5539C", - "T5540C", - "G5552A", - "C5562T", - "T5564A", - "A5565G", - "C5566T", - "C5576A", - "T5579A", - "T5582A", - "C5585T", - "T5589C", - "A5597G", - "A5600G", - "T5603C", - "C5612T", - "T5615C", - "G5621T", - "A5630G", - "T5638A", - "C5645T", - "G5651A", - "T5657C", - "T5690C", - "C5708A", - "A5741G", - "G5756A", - "G5765A", - "T5766C", - "G5780A", - "A5831G", - "A5834G", - "C5841T", - "C5862T", - "G5864A", - "T5867C", - "T5879C", - "C5888T", - "C5894T", - "G5905A", - "C5924T", - "A5954G", - "T5960C", - "A5978G", - "G5987A", - "T5993C", - "C5999T", - "T6008C", - "T6014C", - "A6023G", - "T6026C", - "T6029C", - "T6041C", - "A6047T", - "C6053T", - "A6068G", - "C6074T", - "C6084T", - "C6095T", - "T6104C", - "T6110C", - "C6116T", - "T6119C", - "G6153A", - "C6158T", - "C6161T", - "T6167C", - "T6174C", - "A6176G", - "T6182A", - "C6185A", - "C6204T", - "C6209T", - "C6212T", - "A6224G", - "T6233C", - "G6260A", - "A6263G", - "A6266G", - "C6293T", - "A6299T", - "A6308T", - "A6311G", - "A6314G", - "T6317C", - "C6323T", - "T6342C", - "C6347A", - "A6350T", - "T6362C", - "C6365T", - "T6368C", - "T6392C", - "C6398T", - "T6401C", - "T6404C", - "G6414A", - "A6416G", - "G6419A", - "A6428G", - "C6437A", - "A6452G", - "T6455C", - "G6459A", - "C6467T", - "T6470C", - "A6488T", - "T6500C", - "T6521C", - "T6527C", - "A6533G", - "C6539T", - "C6560T", - "C6566T", - "C6578T", - "A6593C", - "A6599C", - "A6602G", - "C6620G", - "A6626G", - "C6635T", - "T6641G", - "C6644A", - "G6650C", - "A6659T", - "C6666T", - "A6683C", - "T6687C", - "G6695A", - "A6698G", - "T6704C", - "A6707G", - "C6711T", - "G6719A", - "C6725T", - "G6746A", - "T6758C", - "T6764C", - "T6770C", - "C6773A", - "T6779C", - "C6794T", - "T6797C", - "T6800C", - "C6801T", - "T6833C", - "G6836A", - "T6861A", - "A6863G", - "T6884C", - "C6890T", - "G6917A", - "C6923T", - "C6926T", - "A6938T", - "T6944C", - "T6959C", - "C6971T", - "A6986G", - "C6989T", - "A6992G", - "C7001T", - "A7019C", - "C7025T", - "C7028T", - "C7031T", - "C7037T", - "A7040C", - "C7043T", - "A7046G", - "A7052G", - "C7067T", - "A7076C", - "T7079C", - "C7088T", - "T7091C", - "T7097C", - "T7103C", - "G7109A", - "A7130G", - "T7158C", - "C7163T", - "C7172T", - "C7178T", - "G7190A", - "C7196A", - "A7202G", - "C7214T", - "T7217C", - "G7244A", - "C7284T", - "T7304C", - "C7328T", - "C7334T", - "A7340G", - "T7347C", - "A7349G", - "C7352T", - "C7395T", - "G7403A", - "A7424G", - "C7439T", - "A7440G", - "C7442T", - "C7454T", - "A7458G", - "T7460A", - "T7463C", - "A7466G", - "A7544T", - "A7551G", - "G7570A", - "C7577T", - "T7606C", - "G7615A", - "C7624T", - "C7636T", - "C7645T", - "A7646C", - "C7654T", - "G7672A", - "G7678A", - "C7687T", - "T7693C", - "T7699C", - "G7708T", - "C7711T", - "C7720T", - "A7725G", - "G7729A", - "A7744C", - "C7747T", - "A7756G", - "C7757T", - "C7771G", - "G7774T", - "G7780A", - "A7792C", - "G7799A", - "G7807A", - "C7816T", - "C7817G", - "G7822A", - "G7840T", - "C7854T", - "G7859A", - "G7864A", - "G7876A", - "G7903A", - "G7909A", - "A7924G", - "G7939A", - "A7967G", - "T7969C", - "C7978T", - "T7981G", - "C7984T", - "C7990A", - "A7993T", - "A8002G", - "C8005T", - "G8011A", - "G8020A", - "G8029A", - "C8032T", - "T8044C", - "A8053G", - "T8056C", - "C8074T", - "T8080C", - "T8092C", - "T8098C", - "T8158C", - "C8161T", - "C8164T", - "T8170C", - "A8179G", - "A8191G", - "T8194C", - "T8200C", - "G8209A", - "A8212C", - "A8214G", - "T8221C", - "A8229G", - "T8257C", - "T8260C", - "A8266G", - "T8281C", - "G8287A", - "T8308C", - "C8326T", - "T8350C", - "T8353A", - "A8383G", - "C8390T", - "C8407T", - "C8416A", - "T8434C", - "A8443G", - "A8446G", - "C8455T", - "C8458T", - "A8461G", - "C8476G", - "T8477C", - "C8491T", - "T8493C", - "T8494C", - "C8497T", - "G8509A", - "C8515T", - "G8521A", - "C8525T", - "G8528A", - "T8539C", - "A8541C", - "T8566C", - "C8569T", - "T8590C", - "A8596G", - "T8605C", - "C8608T", - "A8621G", - "C8623T", - "C8641T", - "T8650C", - "T8662A", - "C8680T", - "C8686T", - "T8695C", - "T8704C", - "T8710C", - "T8731C", - "T8732C", - "T8737C", - "C8743T", - "G8749A", - "G8750A", - "C8758A", - "T8767C", - "G8768A", - "C8774T", - "C8782T", - "G8797A", - "A8800G", - "C8815T", - "C8818T", - "A8821G", - "C8827T", - "T8833C", - "T8857C", - "C8861T", - "T8866A", - "T8869G", - "C8875T", - "G8878T", - "C8887T", - "C8893A", - "C8896T", - "T8905C", - "A8917G", - "A8935G", - "A8947G", - "T8956C", - "C8968T", - "C8977T", - "C8989G", - "C8998T", - "A9010G", - "C9016T", - "T9034C", - "G9040A", - "T9055C", - "C9091T", - "T9094C", - "T9100G", - "C9109T", - "G9110A", - "A9113G", - "T9115C", - "C9122T", - "C9124T", - "T9133C", - "G9142A", - "C9148T", - "C9151T", - "G9154A", - "G9170A", - "A9178G", - "A9180C", - "C9196T", - "C9199T", - "C9201A", - "G9203A", - "A9208G", - "C9241T", - "A9242C", - "T9250C", - "A9253C", - "C9265T", - "A9268G", - "T9277C", - "T9280C", - "T9283A", - "C9310T", - "C9313G", - "C9326T", - "C9331T", - "A9337G", - "C9340T", - "G9350A", - "C9352T", - "C9355T", - "C9371T", - "A9373G", - "A9376G", - "T9385G", - "C9397T", - "T9400G", - "A9409G", - "C9422T", - "A9434T", - "C9446T", - "C9458G", - "T9466C", - "T9475C", - "C9484T", - "T9499C", - "A9505G", - "G9506T", - "A9521T", - "C9523T", - "A9531C", - "T9547C", - "A9595C", - "C9598T", - "T9604C", - "G9613A", - "G9616A", - "A9632G", - "C9633T", - "C9643T", - "C9646T", - "A9649G", - "C9652T", - "C9661T", - "C9664T", - "C9668A", - "T9669C", - "C9688T", - "A9697T", - "G9707A", - "C9718T", - "T9730G", - "C9733T", - "A9735G", - "T9744C", - "T9745C", - "C9752T", - "T9757C", - "C9764A", - "T9775C", - "G9783A", - "G9790A", - "G9805A", - "G9815A", - "C9820T", - "A9821T", - "G9829A", - "C9838T", - "A9862C", - "C9874T", - "C9886T", - "T9891C", - "T9892C", - "T9896C", - "T9907C", - "C9908T", - "T9917C", - "G9919A", - "T9922A", - "A9925G", - "G9947A", - "T9955C", - "C9958T", - "C10000A", - "G10026A", - "A10036G", - "C10069T", - "C10072T", - "A10099G", - "A10102G", - "C10120A", - "T10130C", - "C10141T", - "C10150T", - "A10159G", - "A10174G", - "G10175A", - "C10180T", - "A10183G", - "C10189T", - "T10204C", - "T10207C", - "A10210G", - "T10213C", - "C10216T", - "T10222C", - "A10228G", - "C10234T", - "C10243T", - "A10244G", - "A10246G", - "C10261T", - "C10291T", - "T10294C", - "G10307A", - "T10321C", - "T10333A", - "C10336G", - "C10339T", - "C10347T", - "C10354T", - "T10357A", - "A10359C", - "C10366T", - "G10372A", - "C10375T", - "C10381T", - "A10384G", - "T10394C", - "C10399T", - "G10411A", - "T10423C", - "T10425C", - "T10426C", - "C10435T", - "C10468T", - "T10471C", - "T10481C", - "T10492C", - "A10495G", - "A10504G", - "C10525A", - "C10531T", - "T10540C", - "T10558C", - "C10561T", - "T10567C", - "T10570C", - "T10576C", - "A10588G", - "A10591G", - "A10603G", - "C10606T", - "T10613C", - "C10614T", - "A10621C", - "C10624T", - "A10633T", - "T10648C", - "C10655T", - "A10667C", - "A10669G", - "C10672A", - "A10708G", - "A10711C", - "G10747T", - "A10750C", - "T10751C", - "C10759T", - "C10762T", - "T10786C", - "A10807G", - "T10832C", - "C10849T", - "T10888C", - "C10918T", - "G10921A", - "C10930T", - "G10951A", - "G10972A", - "C10984T", - "G10996A", - "T11011C", - "A11020G", - "G11027T", - "C11036T", - "C11055T", - "C11059T", - "C11068T", - "C11074T", - "T11080C", - "C11083T", - "C11095T", - "A11113G", - "A11118T", - "T11134A", - "C11155T", - "C11158T", - "C11173A", - "C11182T", - "T11194C", - "A11197G", - "C11200T", - "G11218A", - "A11230G", - "C11236T", - "C11237T", - "C11272T", - "T11287C", - "A11288C", - "C11302T", - "A11322G", - "C11331T", - "A11347G", - "T11357G", - "C11366T", - "C11407T", - "T11408C", - "C11412T", - "T11413C", - "C11417T", - "G11419A", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: S6P, V136I; E1: V116A, L161Q, H394Q, A395T, K404*, T405I, A406G, W407R, T408A, W409S; E2: S185L, N263D, T379A, T418A; nsP1: D11G, S12N, P13F, F14V, M184V, K186E; nsP2: K327R, V375I, P439S, P618L; nsP3: V155A, D217H, I218K, V368M, I390T, V398A, S408G, E432G, A441P, V452M, A456V, G495S; nsP4: I151V, P602S" - }, - "mutations": { - "CP": [ - "S6P", - "V136I" - ], - "E1": [ - "V116A", - "L161Q", - "H394Q", - "A395T", - "K404*", - "T405I", - "A406G", - "W407R", - "T408A", - "W409S" - ], - "E2": [ - "S185L", - "N263D", - "T379A", - "T418A" - ], - "nsP1": [ - "D11G", - "S12N", - "P13F", - "F14V", - "M184V", - "K186E" - ], - "nsP2": [ - "K327R", - "V375I", - "P439S", - "P618L" - ], - "nsP3": [ - "V155A", - "D217H", - "I218K", - "V368M", - "I390T", - "V398A", - "S408G", - "E432G", - "A441P", - "V452M", - "A456V", - "G495S" - ], - "nsP4": [ - "I151V", - "P602S" - ], - "nuc": [ - "A76G", - "C77T", - "G79A", - "T80C", - "C81T", - "C82T", - "T84G", - "A594G", - "A600G", - "T605C", - "G716T", - "G863A", - "T1043C", - "T1632C", - "T1847C", - "T1931C", - "T2036C", - "T2147C", - "G2162A", - "C2252T", - "A2396G", - "C2564T", - "A2629G", - "A2651G", - "G2772A", - "T2922C", - "C2930T", - "C2933T", - "C2964T", - "T2969A", - "C3149T", - "C3371T", - "C3428T", - "A3434G", - "C3502T", - "A3518G", - "C3593T", - "C3734T", - "C3743T", - "T3803C", - "T3845C", - "T4037C", - "G4070A", - "T4145C", - "C4356T", - "C4445T", - "T4495C", - "G4680C", - "T4684A", - "C4694T", - "T4700C", - "C4736G", - "C4889T", - "C4931T", - "G4988A", - "C5018T", - "G5133A", - "A5141G", - "T5153C", - "C5192T", - "T5200C", - "T5224C", - "T5228C", - "A5253G", - "T5273C", - "A5326G", - "T5348G", - "G5352C", - "G5385A", - "C5398T", - "G5514A", - "A5519G", - "T5621A", - "A5648G", - "A5756G", - "A5765G", - "T5876C", - "C6029T", - "A6128G", - "A6153G", - "A6185T", - "G6263C", - "T6398C", - "C6455T", - "C6470T", - "G6602A", - "G6632A", - "T6665C", - "G6698A", - "T6728C", - "C6797T", - "C6870T", - "T6926C", - "T7028C", - "G7058A", - "G7202A", - "C7217T", - "C7347T", - "C7506T", - "T7577C", - "G7648A", - "C7792T", - "A7822G", - "A7939G", - "G7967A", - "T7978C", - "A8020G", - "C8080T", - "G8185A", - "T8188C", - "C8239T", - "T8569C", - "C8590T", - "T8744C", - "C8767T", - "G8800A", - "G9013A", - "C9115T", - "C9117T", - "C9175T", - "G9178A", - "T9241C", - "C9250T", - "A9350G", - "T9397C", - "C9466T", - "T9469C", - "T9523C", - "G9568A", - "A9698G", - "A9805G", - "A9815G", - "T9856C", - "C9868T", - "C10027T", - "G10099A", - "G10159A", - "T10347C", - "T10375C", - "G10384A", - "T10482A", - "C10492T", - "T10606C", - "G11020A", - "T11095C", - "C11122T", - "T11182A", - "G11183A", - "C11185A", - "A11209G", - "A11210T", - "A11212G", - "C11214T", - "C11217G", - "T11219A", - "G11221A", - "A11222G", - "G11226C" - ] - } - }, - "name": "MK028848.1", - "node_attrs": { - "author": { - "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", - "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." - }, - "country": { - "confidence": { - "Australia": 0.8594179371237558, - "Colombia": 0.01950547583384831, - "Honduras": 0.010724138187070941, - "Mexico": 0.010653517355213468 - }, - "entropy": 0.7633782966456711, - "value": "Australia" - }, - "div": 0.22813538588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2018.521917808219, - 2018.521917808219 - ], - "value": 2018.521917808219 - }, - "region": { - "confidence": { - "?": 0.004154205661514894, - "AUSNZ": 0.9768678044229003, - "LA,C": 0.018977989915584918 - }, - "entropy": 0.12088047683890302, - "value": "AUSNZ" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2018": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2018" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E3: V51D; nsP1: E106D; nsP3: E506D" - }, - "mutations": { - "E3": [ - "V51D" - ], - "nsP1": [ - "E106D" - ], - "nsP3": [ - "E506D" - ], - "nuc": [ - "A362C", - "G5549T", - "T8538A" - ] - } - }, - "name": "KR260737.1", - "node_attrs": { - "author": { - "author": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Australia" - }, - "div": 0.23076862588190186, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2013.5, - 2013.5 - ], - "value": 2013.5 - }, - "place_of_collection": { - "value": "Australia" - }, - "region": { - "confidence": { - "AUSNZ": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "AUSNZ" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2013": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2013" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000082", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.9787333437396556, - "Colombia": 0.0036365736132824107, - "Peru": 0.0016736073545995033, - "USA": 0.001586459773622674 - }, - "entropy": 0.15642965063925499, - "value": "Australia" - }, - "div": 0.22204938588190187, - "num_date": { - "confidence": [ - 2012.3397688274981, - 2012.69622653903 - ], - "value": 2012.5124073194527 - }, - "region": { - "confidence": { - "AUSNZ": 0.9907750132575692, - "LA,C": 0.008787771664368872 - }, - "entropy": 0.05416897541578051, - "value": "AUSNZ" - }, - "year": { - "confidence": { - "1905": 0.009594874727071004, - "1994": 0.009896057274555373, - "2013": 0.604738517850819, - "2018": 0.03614946412785277 - }, - "entropy": 2.1662608324772172, - "value": "2013" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: R76G; E1: A347T; E2: P187T; nsP2: K463R, E670D, V677I; nsP3: A366T, V400I, M435V, H481L; nsP4: L42Q, Y268F" - }, - "mutations": { - "CP": [ - "R76G" - ], - "E1": [ - "A347T" - ], - "E2": [ - "P187T" - ], - "nsP2": [ - "K463R", - "E670D", - "V677I" - ], - "nsP3": [ - "A366T", - "V400I", - "M435V", - "H481L" - ], - "nsP4": [ - "L42Q", - "Y268F" - ], - "nuc": [ - "C83A", - "G650A", - "A737G", - "A743G", - "A824G", - "A941G", - "G1316A", - "A1343G", - "C1442A", - "G1460A", - "G1511A", - "C1544G", - "A1682G", - "A1709G", - "T1865A", - "G1946A", - "T2387A", - "A2477C", - "G2582T", - "A2738G", - "G2885A", - "A3037G", - "G3062A", - "T3101G", - "G3206A", - "C3635G", - "A3659C", - "G3678A", - "A3824T", - "A3899C", - "G3920T", - "A4217T", - "G4238A", - "A4337G", - "G4352A", - "A4370C", - "G4427A", - "A4631C", - "A4823G", - "A4901T", - "A5123C", - "G5127A", - "G5229A", - "A5334G", - "T5441A", - "G5471A", - "A5473T", - "A5480C", - "A5567C", - "C5645A", - "G5678A", - "T5827A", - "C5996A", - "G6113T", - "A6122T", - "G6377A", - "A6505T", - "A6509G", - "C6560A", - "A6707T", - "A6914G", - "C7034A", - "A7154T", - "A7298C", - "A7588G", - "G7648A", - "T7693G", - "G7732A", - "C7787G", - "T7948A", - "A7963G", - "G8185A", - "A8230G", - "A8311G", - "T8368G", - "C8459A", - "G8626A", - "C8659A", - "G8668A", - "A8762C", - "A9061G", - "C9122A", - "A9145T", - "A9364C", - "A9379G", - "C9442A", - "C9484G", - "A9529T", - "G9550A", - "A9835G", - "A10474G", - "G11039A", - "G11248A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: K37R; CP: D55E; E1: S14P, V344I, T347A; E2: A315V, T320S, V382I, F389L; nsP2: M224I, A578T; nsP3: V79I, P335T, A357T, V359I, A363E, V406A, A439E, A442V, H471Q, T490I, T495N, A521V", - "GRI Lineage Root": "C" - }, - "mutations": { - "6k": [ - "K37R" - ], - "CP": [ - "D55E" - ], - "E1": [ - "S14P", - "V344I", - "T347A" - ], - "E2": [ - "A315V", - "T320S", - "V382I", - "F389L" - ], - "nsP2": [ - "M224I", - "A578T" - ], - "nsP3": [ - "V79I", - "P335T", - "A357T", - "V359I", - "A363E", - "V406A", - "A439E", - "A442V", - "H471Q", - "T490I", - "T495N", - "A521V" - ], - "nuc": [ - "T161C", - "T278C", - "G305A", - "T332C", - "G437A", - "T440C", - "A509G", - "T533C", - "C536T", - "T599C", - "A680G", - "G731A", - "T741C", - "T755C", - "G779A", - "T804C", - "C920T", - "T1056C", - "G1100A", - "G1109A", - "T1116C", - "C1139T", - "T1190C", - "C1199A", - "G1205A", - "A1265G", - "T1280C", - "C1304T", - "G1319A", - "G1343A", - "A1349G", - "G1406A", - "A1421G", - "A1439G", - "C1458T", - "T1529C", - "G1544A", - "C1565T", - "C1608T", - "T1667G", - "T1694C", - "C1712A", - "T1718C", - "T1733C", - "A1736G", - "T1742C", - "G1757A", - "C1769T", - "T1772C", - "T1778C", - "C1844T", - "G1859T", - "T1874C", - "T1907C", - "C1916T", - "C1928T", - "A1934G", - "T1976C", - "T2006C", - "C2009T", - "T2105C", - "G2114A", - "T2126A", - "C2141T", - "G2168T", - "T2177C", - "A2246G", - "A2258G", - "T2261C", - "C2291T", - "G2321A", - "A2357G", - "T2364C", - "C2394T", - "C2429T", - "C2435T", - "T2510C", - "C2540T", - "G2555A", - "T2579C", - "C2615T", - "A2633G", - "G2645A", - "T2681C", - "C2690T", - "A2696C", - "T2714C", - "T2756C", - "T2792C", - "C2813A", - "C2849T", - "T2906C", - "C2922T", - "C2930T", - "T2966C", - "G2990A", - "T3047C", - "T3065C", - "T3080C", - "T3093C", - "C3119T", - "T3158C", - "C3161T", - "C3227T", - "A3245T", - "T3248C", - "T3296C", - "A3329G", - "A3374T", - "G3381A", - "C3395T", - "C3407T", - "C3444T", - "T3473C", - "C3534T", - "T3570C", - "T3593A", - "T3600C", - "C3608T", - "T3647C", - "A3653G", - "C3671T", - "C3677A", - "T3683C", - "G3692A", - "T3698C", - "T3719C", - "T3728C", - "C3800T", - "T3824C", - "T3848C", - "T3851C", - "A3890G", - "C3899T", - "T3983C", - "T3987C", - "T4061C", - "A4109G", - "T4145C", - "G4148A", - "T4211C", - "C4226T", - "C4235T", - "C4253T", - "T4259C", - "G4266A", - "C4304T", - "T4325C", - "A4391C", - "C4397T", - "T4436C", - "C4535T", - "C4541T", - "T4544A", - "A4565G", - "T4601A", - "G4610A", - "A4643G", - "C4658T", - "T4664C", - "A4688G", - "T4709C", - "T4712C", - "C4739T", - "C4760T", - "T4772C", - "A4778G", - "A4814G", - "A4874G", - "C4880G", - "T4886C", - "T4931C", - "G4988A", - "G4997A", - "T5003C", - "C5034A", - "G5057C", - "A5099G", - "G5100A", - "G5106A", - "C5119A", - "G5126A", - "T5138C", - "C5147T", - "C5150T", - "G5159A", - "T5174C", - "T5180C", - "C5234T", - "T5246A", - "T5248C", - "C5261T", - "C5297T", - "T5301C", - "A5303G", - "G5345A", - "C5347A", - "A5348G", - "C5356T", - "T5417C", - "A5420G", - "T5444G", - "A5453G", - "A5465G", - "T5474C", - "C5480T", - "C5500T", - "C5515A", - "C5525A", - "A5546G", - "T5564C", - "T5582C", - "C5593T", - "T5603C", - "C5612A", - "T5615C", - "C5618T", - "G5621T", - "T5657C", - "C5693T", - "T5766C", - "A5840G", - "C5841T", - "C5844T", - "C5862T", - "T5867C", - "T5876C", - "G5906A", - "A5921G", - "T5933C", - "A6023G", - "T6026C", - "T6029C", - "T6041C", - "C6080T", - "C6084T", - "T6104C", - "T6119C", - "A6128G", - "C6173T", - "C6227T", - "T6230C", - "G6251A", - "A6308G", - "T6362C", - "G6395A", - "T6497A", - "C6551T", - "A6569G", - "C6578T", - "A6611G", - "G6617A", - "C6620A", - "T6687C", - "T6704C", - "G6719A", - "T6737C", - "G6746A", - "T6770C", - "T6815C", - "T6827C", - "T6833C", - "C6839T", - "T6878C", - "C6879T", - "T6911C", - "C6953T", - "C6971T", - "C6989T", - "A6992G", - "C7005T", - "A7034G", - "G7058A", - "A7076G", - "T7154C", - "C7187T", - "G7190A", - "A7202G", - "T7226C", - "G7256A", - "C7275T", - "T7304A", - "C7328T", - "C7352T", - "A7406T", - "T7463C", - "G7588T", - "T7606C", - "T7699C", - "C7726A", - "A7732G", - "C7747T", - "G7780A", - "A7792G", - "G7843A", - "T7849C", - "G7864A", - "C7918T", - "T7925C", - "C7936T", - "G7963A", - "G8029A", - "A8053G", - "A8071G", - "T8158C", - "T8170C", - "T8173C", - "T8194C", - "G8224A", - "C8227T", - "G8230A", - "C8239T", - "A8242G", - "G8287A", - "C8374T", - "C8437T", - "T8494C", - "T8500G", - "T8518C", - "G8527A", - "C8548A", - "A8554G", - "C8569T", - "T8605C", - "C8623T", - "A8626G", - "T8629C", - "T8698C", - "T8704C", - "G8716A", - "C8734T", - "T8737C", - "G8797A", - "C8815T", - "C8818T", - "T8854C", - "T8857C", - "C8861T", - "C8887T", - "T8986C", - "A9079T", - "T9095C", - "T9100C", - "C9103T", - "C9172T", - "A9268G", - "C9313T", - "C9331T", - "T9385G", - "T9400A", - "T9430C", - "C9451T", - "T9454C", - "A9505G", - "C9507T", - "T9517C", - "A9521T", - "C9523T", - "G9538A", - "A9556T", - "A9601G", - "T9655C", - "C9664T", - "T9694C", - "A9697G", - "G9707A", - "T9709C", - "T9730A", - "T9745C", - "C9814T", - "C9817T", - "T9856C", - "C9859T", - "C9868T", - "T9892C", - "A9942G", - "C9946T", - "T10040C", - "A10156G", - "C10180T", - "T10204C", - "C10243T", - "T10273G", - "C10300T", - "C10318T", - "C10354T", - "C10420T", - "T10423C", - "T10426C", - "T10492C", - "C10531T", - "T10555C", - "T10576C", - "A10588G", - "A10597T", - "C10624T", - "T10642C", - "T10648C", - "T10702A", - "A10741G", - "G10747A", - "C10759T", - "C10777T", - "A10819G", - "C10849T", - "T10861C", - "T10888A", - "C10912T", - "G10951A", - "G10981A", - "T11008A", - "T11011C", - "G11030A", - "C11036T", - "A11039G", - "C11059T", - "C11074T", - "T11080C", - "T11119C", - "C11122T", - "C11158T", - "C11254T", - "T11355C", - "C11364T", - "C11366T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P98Q; E1: P14S, I344V, A347T; E2: Q81R, M275I, V315A; nsP1: D127N; nsP3: N100H, T335P, E337D, T357A, L358P, I490T, T512A, T524A" - }, - "mutations": { - "CP": [ - "P98Q" - ], - "E1": [ - "P14S", - "I344V", - "A347T" - ], - "E2": [ - "Q81R", - "M275I", - "V315A" - ], - "nsP1": [ - "D127N" - ], - "nsP3": [ - "N100H", - "T335P", - "E337D", - "T357A", - "L358P", - "I490T", - "T512A", - "T524A" - ], - "nuc": [ - "T378C", - "G423A", - "C473T", - "A617T", - "T1061C", - "A1202G", - "A1205G", - "G1265A", - "A1268C", - "A1319G", - "T1340C", - "T1352C", - "C1469T", - "C1502T", - "C1529T", - "T1589C", - "T1619C", - "A1634G", - "C1706T", - "C1721T", - "C1742T", - "T1829C", - "A1850G", - "C1874T", - "C1907T", - "T1922C", - "T1997C", - "C2006T", - "A2126T", - "G2258A", - "C2328T", - "T2394C", - "T2429C", - "T2540C", - "C2573T", - "C2579T", - "A2639G", - "A2645T", - "T2666C", - "T2690C", - "A2813C", - "T2846C", - "A2885G", - "A3095G", - "T3227C", - "C3296T", - "A3416C", - "T3444C", - "T3477C", - "A3581G", - "G3590A", - "A3593T", - "C3596T", - "T3642C", - "T3671C", - "C3698T", - "T3716C", - "C3728T", - "C3806T", - "T3815C", - "G3860T", - "C3887T", - "A3917G", - "C3987T", - "C4259A", - "A4313G", - "A4329C", - "C4391A", - "C4409T", - "T4425C", - "A4514T", - "T4535C", - "C4538T", - "A4610G", - "C4616T", - "T4739C", - "A4805T", - "C4820T", - "T4844C", - "T4901C", - "C4979T", - "G4985T", - "A5034C", - "A5042C", - "G5084A", - "A5100G", - "T5104C", - "G5144A", - "T5150C", - "C5174T", - "C5192T", - "A5246G", - "C5255T", - "A5354T", - "G5453A", - "T5500C", - "C5555T", - "A5565G", - "A5601G", - "G5639A", - "G5789A", - "G5840A", - "T5841C", - "G5864A", - "T5993C", - "T6080C", - "C6144T", - "T6167A", - "T6182C", - "C6323T", - "T6464C", - "G6509A", - "T6518C", - "T6551C", - "A6552C", - "C6566T", - "C6677T", - "A6698G", - "T6758C", - "T6764C", - "T6797C", - "C6870T", - "T6879C", - "G6887A", - "C6977T", - "C7062T", - "A7082T", - "C7088T", - "C7106T", - "G7223A", - "C7226T", - "A7256G", - "T7347C", - "T7388C", - "T7436C", - "C7699T", - "C7854A", - "T7918C", - "T7936C", - "A7993G", - "C8045T", - "C8194T", - "A8218T", - "A8224G", - "T8299C", - "C8416T", - "G8521A", - "G8554A", - "T8635A", - "C8644T", - "T8767C", - "A8805G", - "T8818C", - "C8836T", - "T8851C", - "T8905C", - "C8926T", - "C8986T", - "C9022T", - "A9046G", - "T9103C", - "T9104C", - "T9115C", - "A9301G", - "C9326T", - "G9388A", - "T9451C", - "G9505A", - "T9507C", - "T9577C", - "C9688T", - "G9790A", - "T9823C", - "C9832T", - "C9860T", - "T9868C", - "C9892T", - "C10040T", - "A10075G", - "C10120T", - "G10156A", - "T10207A", - "G10297A", - "C10576T", - "T10597A", - "T10600C", - "A10702G", - "T10744C", - "C10762A", - "C10771T", - "A10888T", - "A10951G", - "A11030G", - "G11039A", - "T11254C", - "T11366C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: S141P; E2: R81Q, P191S, A196V, S372L; nsP1: I64V, N127D; nsP2: K338R; nsP3: Q392R, T490S; nsP4: M276A" - }, - "mutations": { - "E1": [ - "S141P" - ], - "E2": [ - "R81Q", - "P191S", - "A196V", - "S372L" - ], - "nsP1": [ - "I64V", - "N127D" - ], - "nsP2": [ - "K338R" - ], - "nsP3": [ - "Q392R", - "T490S" - ], - "nsP4": [ - "M276A" - ], - "nuc": [ - "A234G", - "C356T", - "A423G", - "T434C", - "C807T", - "T1529C", - "T1643C", - "T1784C", - "C1829T", - "A1853G", - "T1916C", - "C1955T", - "G1958A", - "T2015C", - "T2237C", - "A2662G", - "C2690T", - "T3195C", - "A3497G", - "T3899C", - "C3941T", - "T4100C", - "C4322T", - "T4616C", - "C4739T", - "T4760C", - "A4895G", - "C5075T", - "A5206G", - "T5273G", - "C5342T", - "A5499T", - "G5588A", - "A6062G", - "C6074T", - "T6098C", - "T6197A", - "G6344A", - "C6467T", - "A6528G", - "T6529C", - "G6698A", - "T6944C", - "T7062C", - "C7118T", - "T7211C", - "C7624T", - "A8104G", - "A8215G", - "G8805A", - "C8818T", - "G9046A", - "C9134T", - "T9139C", - "C9150T", - "T9529C", - "C9577T", - "C9678T", - "C10186T", - "T10421C", - "C10651A", - "T10720C" - ] - } - }, - "name": "KC344472.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.2299820358819019, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1984.0013661202186, - 1984.8989071038252 - ], - "value": 1984.0013661202186 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1984": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1984" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: K223R; E1: T162I; E2: H91Q, S177R, Y306F; nsP1: F423L; nsP2: I21L, V643I; nsP3: T197I, A344V, Q347R, P356S, G402E, A473V" - }, - "mutations": { - "CP": [ - "K223R" - ], - "E1": [ - "T162I" - ], - "E2": [ - "H91Q", - "S177R", - "Y306F" - ], - "nsP1": [ - "F423L" - ], - "nsP2": [ - "I21L", - "V643I" - ], - "nsP3": [ - "T197I", - "A344V", - "Q347R", - "P356S", - "G402E", - "A473V" - ], - "nuc": [ - "A12G", - "G293A", - "A389G", - "C470A", - "C1160T", - "C1172T", - "T1311C", - "G1562A", - "A1655G", - "A1710C", - "A1712G", - "A1724T", - "C1841A", - "A1865T", - "A1937G", - "C1949T", - "C2027T", - "A2108T", - "C2115T", - "A2162G", - "C2192T", - "T2237C", - "C2276T", - "A2300C", - "A2426G", - "A2456C", - "T2462A", - "G2780A", - "A2936G", - "C2949T", - "C3158T", - "T3195C", - "C3209T", - "C3239T", - "C3321T", - "T3443C", - "G3467A", - "G3576A", - "C3671T", - "T3686A", - "T3770C", - "A3896G", - "T3899C", - "T4223C", - "G4499A", - "C4621T", - "C4784T", - "C4871T", - "T4985C", - "C5018T", - "C5062T", - "A5071G", - "C5097T", - "G5236A", - "C5319T", - "C5375T", - "C5449T", - "A5460C", - "A5600G", - "C5993T", - "T6125C", - "T6173C", - "A6251G", - "C6326T", - "T6401C", - "A6416G", - "A6488G", - "C6518T", - "G6575A", - "T6699C", - "C6740T", - "A6929G", - "A6938G", - "C7127T", - "A7511C", - "C7609T", - "C7651T", - "C7918T", - "T8045C", - "T8086G", - "T8200A", - "A8229G", - "C8236T", - "G8509A", - "T8695C", - "T8833C", - "T8836G", - "A9092C", - "C9223T", - "C9422T", - "A9480T", - "C9481T", - "G9748A", - "G9799A", - "T9871C", - "C10072T", - "A10159T", - "T10279C", - "T10354C", - "C10423T", - "C10465T", - "T10481C", - "C10485T", - "C10606T", - "A10762G", - "T10768C", - "C10846T", - "C10861T", - "A11026T", - "T11357C", - "C11366T" - ] - } - }, - "name": "KC344473.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.2361561958819019, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1997.0013698630137, - 1997.898904109589 - ], - "value": 1997.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: R328K" - }, - "mutations": { - "nsP2": [ - "R328K" - ], - "nuc": [ - "G2632A", - "C3737T", - "G4577A", - "C5951A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP4: K567R" - }, - "mutations": { - "nsP4": [ - "K567R" - ], - "nuc": [ - "C530T", - "G2096A", - "C2363T", - "C2507T", - "C2759T", - "A4932C", - "C6437T", - "A6545G", - "T6839C", - "A6893G", - "C7298T", - "A7402G", - "T8080C", - "C8128T", - "C8752G", - "C10000T", - "C10615T", - "A11008G", - "C11119T", - "C11185T" - ] - } - }, - "name": "KC344503.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.2288709658819019, - "host": { - "value": "Culex aikenii sensu lato" - }, - "num_date": { - "confidence": [ - 1977.101095890411, - 1977.9986301369863 - ], - "value": 1977.9986301369863 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1977": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: R81Q; nsP1: N127D; nsP3: Q395R", - "GRI Lineage Root": "C.1" - }, - "mutations": { - "E2": [ - "R81Q" - ], - "nsP1": [ - "N127D" - ], - "nsP3": [ - "Q395R" - ], - "nuc": [ - "A423G", - "T770C", - "C1394T", - "T1547C", - "T1730C", - "C2018T", - "C2027T", - "A2066G", - "C2714T", - "C3836T", - "T3899C", - "T4046C", - "C4154T", - "C4901T", - "A5215G", - "C6878T", - "T7088C", - "C7573T", - "C7612T", - "A8287G", - "G8805A", - "A9118G", - "T9313C", - "C10141T", - "G10231A", - "T10357A", - "G10921A", - "C10984T", - "T11357C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: I142T, E345D; E2: T379I; nsP1: A173V; nsP2: V643I; nsP3: T13M, P496L" - }, - "mutations": { - "E1": [ - "I142T", - "E345D" - ], - "E2": [ - "T379I" - ], - "nsP1": [ - "A173V" - ], - "nsP2": [ - "V643I" - ], - "nsP3": [ - "T13M", - "P496L" - ], - "nuc": [ - "C562T", - "T620C", - "G1046A", - "C1061T", - "C1208T", - "G1325A", - "T2168C", - "C2171T", - "C2207T", - "T2328C", - "C2444T", - "C2501T", - "C2507T", - "T2531C", - "G2633A", - "C2826A", - "G2897A", - "C2981T", - "C3311T", - "T3395C", - "A3521G", - "G3576A", - "C3869T", - "T3956C", - "C4069T", - "T4097A", - "G4463A", - "G4799A", - "T5105C", - "G5348A", - "C5518T", - "C5792T", - "T6959C", - "G7124A", - "G7397A", - "G7879A", - "C7888T", - "C8576T", - "A9415G", - "C9451T", - "T9478C", - "T9556C", - "T9674C", - "C9699T", - "C9886T", - "C10000T", - "C10153T", - "C10339T", - "T10425C", - "A10681G", - "G11035T" - ] - } - }, - "name": "KC344510.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.23350530588190188, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.4716788780702 - ], - "value": 2000.0013661202186 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1" - }, - "GRI Lineage Level 3": { - "value": "C.1" - }, - "GRI Lineage Level 4": { - "value": "C.1" - }, - "GRI Lineage Level 5": { - "value": "C.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: R463K, G669S" - }, - "mutations": { - "nsP2": [ - "R463K", - "G669S" - ], - "nuc": [ - "C404T", - "T758C", - "C807T", - "C1688A", - "T2291C", - "C2756T", - "C2949T", - "C2966T", - "T3011C", - "G3037A", - "T3281C", - "T3443C", - "G3654A", - "C3671T", - "A5120G", - "C6615A", - "C6897T", - "T7275C", - "T8188C", - "G9343A", - "G9748A", - "G10393A", - "C10561T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: P304S" - }, - "mutations": { - "E2": [ - "P304S" - ], - "nuc": [ - "A83G", - "C1718T", - "A2948G", - "C5489T", - "C6179T", - "G7199A", - "C7214T", - "C9473T", - "A10807G", - "A11077T" - ] - } - }, - "name": "KC344511.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.23190054588190187, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2001.0013698630137, - 2001.3892903418782 - ], - "value": 2001.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2001": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1" - }, - "GRI Lineage Level 3": { - "value": "C.1" - }, - "GRI Lineage Level 4": { - "value": "C.1" - }, - "GRI Lineage Level 5": { - "value": "C.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C3992A", - "A6893G", - "T9079C", - "T11161C" - ] - }, - "labels": { - "GRI Lineage Root": "C.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: T521A; nsP2: S624L" - }, - "mutations": { - "nsP1": [ - "T521A" - ], - "nsP2": [ - "S624L" - ], - "nuc": [ - "A1460G", - "A1605G", - "C3520T", - "C3869T", - "C4430T", - "C5309T", - "C5333T", - "G5966A", - "C7540T", - "A9538G", - "C10555T" - ] - } - }, - "name": "KC344474.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.23233186588190188, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2001.0013698630137, - 2001.9986301369863 - ], - "value": 2001.3575813906334 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2001": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1.0" - }, - "GRI Lineage Level 3": { - "value": "C.1.0" - }, - "GRI Lineage Level 4": { - "value": "C.1.0" - }, - "GRI Lineage Level 5": { - "value": "C.1.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: T424S, P466S; nsP3: V331A" - }, - "mutations": { - "nsP2": [ - "T424S", - "P466S" - ], - "nsP3": [ - "V331A" - ], - "nuc": [ - "A2378G", - "A2919T", - "C3045T", - "T3800C", - "A4601T", - "C4784T", - "T5023C", - "C5567T", - "C6737T", - "A7681G", - "T7682C", - "T8000C", - "G9448A", - "C10255T", - "A10678C", - "C10918T" - ] - } - }, - "name": "KC344475.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.2327740058819019, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2003.0013698630137, - 2003.898904109589 - ], - "value": 2003.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2003": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1.0" - }, - "GRI Lineage Level 3": { - "value": "C.1.0" - }, - "GRI Lineage Level 4": { - "value": "C.1.0" - }, - "GRI Lineage Level 5": { - "value": "C.1.0" - } - } - } - ], - "name": "NODE_0000070", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999999902708743 - }, - "entropy": 2.0920332078942935e-7, - "value": "Panama" - }, - "div": 0.2313688158819019, - "num_date": { - "confidence": [ - 2000.7902634053232, - 2001.6511838621232 - ], - "value": 2001.1264365351863 - }, - "region": { - "confidence": { - "LA,C": 0.999999999641864 - }, - "entropy": 8.297360339235326e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2001": 0.9983977913316626 - }, - "entropy": 0.014930538183241618, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1.0" - }, - "GRI Lineage Level 3": { - "value": "C.1.0" - }, - "GRI Lineage Level 4": { - "value": "C.1.0" - }, - "GRI Lineage Level 5": { - "value": "C.1.0" - } - } - } - ], - "name": "NODE_0000069", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999999913040938 - }, - "entropy": 1.878927165651654e-7, - "value": "Panama" - }, - "div": 0.23101990588190188, - "num_date": { - "confidence": [ - 2000.6539500744332, - 2001.225747428363 - ], - "value": 2000.8709563754787 - }, - "region": { - "confidence": { - "LA,C": 0.9999999996836105 - }, - "entropy": 7.368584296570305e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2001": 0.9987292551946682 - }, - "entropy": 0.012682008802327362, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1" - }, - "GRI Lineage Level 3": { - "value": "C.1" - }, - "GRI Lineage Level 4": { - "value": "C.1" - }, - "GRI Lineage Level 5": { - "value": "C.1" - } - } - } - ], - "name": "NODE_0000068", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999957881500906 - }, - "entropy": 0.00006537518360625694, - "value": "Panama" - }, - "div": 0.2290066458819019, - "num_date": { - "confidence": [ - 1998.656785084672, - 1999.2732758266957 - ], - "value": 1998.9922408180812 - }, - "region": { - "confidence": { - "LA,C": 0.9999998713451947 - }, - "entropy": 0.0000022251932886183015, - "value": "LA,C" - }, - "year": { - "confidence": { - "1995": 0.007818514077846155, - "1997": 0.008334382584605452, - "2000": 0.5280450245910359, - "2001": 0.24491334946476767 - }, - "entropy": 1.8833974689750852, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1" - }, - "GRI Lineage Level 3": { - "value": "C.1" - }, - "GRI Lineage Level 4": { - "value": "C.1" - }, - "GRI Lineage Level 5": { - "value": "C.1" - } - } - } - ], - "name": "NODE_0000067", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999998995817745 - }, - "entropy": 0.0000019266255152841053, - "value": "Panama" - }, - "div": 0.2267991558819019, - "num_date": { - "confidence": [ - 1977.788538878489, - 1977.895698680376 - ], - "value": 1977.8477483857685 - }, - "region": { - "confidence": { - "LA,C": 0.9999999971182525 - }, - "entropy": 6.076789474531254e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.0036970971708605834, - "1977": 0.8940598913287021, - "1978": 0.0045966058968961165, - "1984": 0.0075403794881649805 - }, - "entropy": 0.7395713477437835, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - } - ], - "name": "NODE_0000066", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999997575193412 - }, - "entropy": 0.0000043909306046287104, - "value": "Panama" - }, - "div": 0.2264188558819019, - "num_date": { - "confidence": [ - 1977.7292078961614, - 1977.8622212630348 - ], - "value": 1977.798261370268 - }, - "region": { - "confidence": { - "LA,C": 0.99999999509605 - }, - "entropy": 1.0063191515157148e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.0068076526157817355, - "1977": 0.799603721150093, - "1978": 0.008417082979297353, - "1984": 0.014903525680156189 - }, - "entropy": 1.260286620433675, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - } - ], - "name": "NODE_0000065", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999968352671661 - }, - "entropy": 0.000049704119839638176, - "value": "Panama" - }, - "div": 0.22553092588190188, - "num_date": { - "confidence": [ - 1977.4802083367954, - 1977.7220653283744 - ], - "value": 1977.6094227189046 - }, - "region": { - "confidence": { - "LA,C": 0.9999999255293538 - }, - "entropy": 0.0000013285340610107157, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.009412713264647458, - "1977": 0.7153687696326226, - "1978": 0.011571071923848257, - "1984": 0.022183386104024348 - }, - "entropy": 1.6750053465038044, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C4088A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: S118A; nsP1: A509V; nsP2: K223R, H244Y, I375V; nsP3: D362G, Y447H" - }, - "mutations": { - "E2": [ - "S118A" - ], - "nsP1": [ - "A509V" - ], - "nsP2": [ - "K223R", - "H244Y", - "I375V" - ], - "nsP3": [ - "D362G", - "Y447H" - ], - "nuc": [ - "A26G", - "T173C", - "C284T", - "T378C", - "G395A", - "C638T", - "C761T", - "A779G", - "C804T", - "T920C", - "C1403T", - "G1421A", - "C1570T", - "C1733T", - "C1892T", - "C2147T", - "T2237C", - "A2317G", - "C2379T", - "A2489C", - "C2537T", - "C2564T", - "A2772G", - "G2852T", - "C2966T", - "T3134C", - "C3204T", - "C3413T", - "C3683T", - "C3737T", - "C3983T", - "C4244G", - "T4388C", - "C4712T", - "C5018T", - "A5116G", - "A5246C", - "G5351A", - "T5370C", - "C5384T", - "C5447A", - "C5576T", - "A5612T", - "C5771T", - "C5933T", - "A6389G", - "T6521C", - "C6677A", - "T6692C", - "T6797C", - "A6929G", - "C7088T", - "C7464T", - "G7496A", - "T7682C", - "G7909A", - "C8035T", - "C8041T", - "T8299C", - "T8434C", - "C8602T", - "C8620T", - "G8872A", - "T8915G", - "C9124T", - "T9139G", - "G10258A", - "C10762T", - "C10771T", - "T10849A", - "T11333C", - "C11378A" - ] - } - }, - "name": "L00930.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W.", - "value": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W." - }, - "country": { - "confidence": { - "Colombia": 0.0032618862464869175, - "Mexico": 0.0018113207770533238, - "Panama": 0.9808219497630047, - "Peru": 0.0025203365796446237 - }, - "entropy": 0.14249360558722074, - "value": "Panama" - }, - "div": 0.2272626658819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1961.941454074133, - 1961.9986301369863 - ], - "value": 1961.9986301369863 - }, - "region": { - "confidence": { - "LA,C": 0.9990386321695258 - }, - "entropy": 0.00821879945028915, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1961": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A31T", - "T146C", - "G359A", - "C587T", - "C807T", - "C815T", - "T857C", - "C1056T", - "G1241A", - "C1394T", - "T1847C", - "C2519T", - "G2651A", - "A2867G", - "T4097G", - "T4298C", - "T4637C", - "C5657T", - "T6143C", - "G6206A", - "A6350T", - "C6722T", - "G6734T", - "C6977T", - "C7151T", - "C7214T", - "T7951C", - "C8164T", - "G8542A", - "A8653T", - "T9139C", - "C9163T", - "C9622T", - "G9943A", - "A10159C", - "C10516T", - "T10558C", - "C10930T", - "G11071A", - "C11407T", - "T11409C", - "C11412T", - "T11414C", - "C11417T" - ] - }, - "labels": { - "GRI Lineage Root": "C.2" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: G76R; E1: A163V; E3: K26E; nsP1: P520S; nsP4: S591C" - }, - "mutations": { - "CP": [ - "G76R" - ], - "E1": [ - "A163V" - ], - "E3": [ - "K26E" - ], - "nsP1": [ - "P520S" - ], - "nsP4": [ - "S591C" - ], - "nuc": [ - "C1602T", - "T5363C", - "T6578C", - "A7473T", - "G7787A", - "A8462G", - "T8905C", - "G9166A", - "C10488T" - ] - } - }, - "name": "KC344506.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.22535078588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1961.9575311560668, - 1961.9986301369863 - ], - "value": 1961.9986301369863 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1961": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2" - }, - "GRI Lineage Level 3": { - "value": "C.2" - }, - "GRI Lineage Level 4": { - "value": "C.2" - }, - "GRI Lineage Level 5": { - "value": "C.2" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T2963C", - "C3158T", - "T4647C", - "C6890T", - "C8686T", - "C11119T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E303D, I373T; nsP2: A215V" - }, - "mutations": { - "E2": [ - "E303D", - "I373T" - ], - "nsP2": [ - "A215V" - ], - "nuc": [ - "G1541A", - "A1757G", - "C2293T", - "C4361T", - "C4820T", - "A4997G", - "G5210A", - "C6000T", - "T6879C", - "T8251C", - "G9472T", - "T9681C", - "T9793G", - "C10009T" - ] - } - }, - "name": "KC344488.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.22634338588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1966.0013698630137, - 1966.898904109589 - ], - "value": 1966.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1966": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1966" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2" - }, - "GRI Lineage Level 3": { - "value": "C.2" - }, - "GRI Lineage Level 4": { - "value": "C.2" - }, - "GRI Lineage Level 5": { - "value": "C.2" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T6401C", - "T8662C" - ] - }, - "labels": { - "GRI Lineage Root": "C.2.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: T187A; nsP4: S596C" - }, - "mutations": { - "E2": [ - "T187A" - ], - "nsP4": [ - "S596C" - ], - "nuc": [ - "C1772T", - "A1856G", - "C2537T", - "C5924T", - "T7400C", - "G7403A", - "T7469C", - "A7488T", - "A9122G", - "T9508C", - "A10825G", - "C11418T" - ] - } - }, - "name": "KC344518.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.22625218588190185, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1965.0013698630137, - 1965.898904109589 - ], - "value": 1965.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1965": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1965" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2.0" - }, - "GRI Lineage Level 3": { - "value": "C.2.0" - }, - "GRI Lineage Level 4": { - "value": "C.2.0" - }, - "GRI Lineage Level 5": { - "value": "C.2.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: A56V; E1: V208I; E2: T213K; nsP3: L385Q" - }, - "mutations": { - "CP": [ - "A56V" - ], - "E1": [ - "V208I" - ], - "E2": [ - "T213K" - ], - "nsP3": [ - "L385Q" - ], - "nuc": [ - "C791T", - "A2631C", - "T5185A", - "C7728T", - "C7888T", - "T8278C", - "C9201A", - "G9898A", - "G10622A" - ] - } - }, - "name": "KC344471.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.22606494588190185, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1962.1470952391612, - 1962.9986301369863 - ], - "value": 1962.9986301369863 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1962": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2.0" - }, - "GRI Lineage Level 3": { - "value": "C.2.0" - }, - "GRI Lineage Level 4": { - "value": "C.2.0" - }, - "GRI Lineage Level 5": { - "value": "C.2.0" - } - } - } - ], - "name": "NODE_0000075", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999999923672651 - }, - "entropy": 1.658921893945744e-7, - "value": "Panama" - }, - "div": 0.22527127588190185, - "num_date": { - "confidence": [ - 1962.8316999794392, - 1962.9494825561792 - ], - "value": 1962.9015092917452 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997223704 - }, - "entropy": 6.501732270368201e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1961": 0.09897229823287047, - "1962": 0.8376188316096428, - "1965": 0.02426974226349439, - "1966": 0.009267650650287139 - }, - "entropy": 0.7282851258026614, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2.0" - }, - "GRI Lineage Level 3": { - "value": "C.2.0" - }, - "GRI Lineage Level 4": { - "value": "C.2.0" - }, - "GRI Lineage Level 5": { - "value": "C.2.0" - } - } - } - ], - "name": "NODE_0000074", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999999447744954 - }, - "entropy": 0.0000010907296727514108, - "value": "Panama" - }, - "div": 0.22509387588190186, - "num_date": { - "confidence": [ - 1962.752506881463, - 1962.9245635875754 - ], - "value": 1962.844980001449 - }, - "region": { - "confidence": { - "LA,C": 0.9999999980811757 - }, - "entropy": 4.124816174014818e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1961": 0.22586265145924547, - "1962": 0.6778274713162057, - "1965": 0.01947832600222567, - "1966": 0.021516795290924665 - }, - "entropy": 1.1273481074680594, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2" - }, - "GRI Lineage Level 3": { - "value": "C.2" - }, - "GRI Lineage Level 4": { - "value": "C.2" - }, - "GRI Lineage Level 5": { - "value": "C.2" - } - } - } - ], - "name": "NODE_0000073", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999987470517508 - }, - "entropy": 0.00001973654829025499, - "value": "Panama" - }, - "div": 0.22456015588190187, - "num_date": { - "confidence": [ - 1961.8483888829617, - 1961.9538944812166 - ], - "value": 1961.9060982766534 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993923915 - }, - "entropy": 1.3748706712518952e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1961": 0.9924595162918106, - "1962": 0.00609192443509556 - }, - "entropy": 0.05340181148597014, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2" - }, - "GRI Lineage Level 3": { - "value": "C.2" - }, - "GRI Lineage Level 4": { - "value": "C.2" - }, - "GRI Lineage Level 5": { - "value": "C.2" - } - } - } - ], - "name": "NODE_0000072", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9982447369144029 - }, - "entropy": 0.015237172699824782, - "value": "Panama" - }, - "div": 0.22076858588190187, - "num_date": { - "confidence": [ - 1961.1097937141378, - 1961.3555944824375 - ], - "value": 1961.244437771567 - }, - "region": { - "confidence": { - "LA,C": 0.9999995553421286 - }, - "entropy": 0.000007157057301765936, - "value": "LA,C" - }, - "year": { - "confidence": { - "1961": 0.9908910817859146, - "1962": 0.003423889424177315 - }, - "entropy": 0.07949538259446542, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: V39M; E1: Y373F; E2: A301T, V315A; E3: R58K; nsP2: K203R; nsP3: S348P, A516T" - }, - "mutations": { - "6k": [ - "V39M" - ], - "E1": [ - "Y373F" - ], - "E2": [ - "A301T", - "V315A" - ], - "E3": [ - "R58K" - ], - "nsP2": [ - "K203R" - ], - "nsP3": [ - "S348P", - "A516T" - ], - "nuc": [ - "T146C", - "C192T", - "C401T", - "T725C", - "T773C", - "C807T", - "G812A", - "C815T", - "T944A", - "C986T", - "A1049G", - "G1265A", - "T1304C", - "C1403T", - "C1448T", - "T1458C", - "T1859C", - "C2046T", - "A2257G", - "C2261T", - "G2357C", - "T2402C", - "T2462A", - "C2477T", - "T2504C", - "G2699A", - "T2849C", - "C2975T", - "C3014T", - "C3080T", - "A3122T", - "C3204T", - "C3296T", - "C3321T", - "T3380C", - "A3521G", - "C3791T", - "C3827T", - "C3941T", - "T4094C", - "A4124C", - "T4226C", - "A4454C", - "C4457T", - "T4502C", - "A4532C", - "G4577A", - "C4772T", - "T5073C", - "T5105C", - "T5129C", - "G5144A", - "C5174T", - "C5211T", - "T5330C", - "C5342T", - "G5465A", - "C5489T", - "G5577A", - "G5840A", - "G5903A", - "T5993C", - "C6026T", - "T6080C", - "C6095T", - "T6170C", - "T6174C", - "C6179T", - "C6347T", - "T6368C", - "C6431T", - "T6470C", - "T6522C", - "A6533G", - "G6575A", - "C6755T", - "C6833T", - "T6861C", - "T6879C", - "T7005C", - "C7022T", - "C7100T", - "C7226T", - "A7301G", - "T7347C", - "A7382G", - "A7391G", - "C7699T", - "G7789A", - "A7798G", - "C8041T", - "T8200C", - "A8224G", - "T8374C", - "A8467G", - "G8559A", - "C8576T", - "C8698T", - "C8737T", - "C8770T", - "C8926T", - "A8935G", - "T9052C", - "C9112T", - "T9145C", - "C9290T", - "A9409G", - "T9451A", - "G9464A", - "T9507C", - "T9682C", - "C9739T", - "G9790A", - "T9793C", - "C9860T", - "T9907C", - "G9947A", - "A10075G", - "C10120A", - "G10156A", - "G10219A", - "T10243C", - "T10252G", - "C10366T", - "T10471C", - "A10495G", - "T10558C", - "C10561T", - "A10621T", - "C10654T", - "C10861T", - "C10984T", - "A11118T", - "T11254C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: A20V, N183T; nsP2: R138K; nsP3: N346D, Y447H" - }, - "mutations": { - "CP": [ - "A20V", - "N183T" - ], - "nsP2": [ - "R138K" - ], - "nsP3": [ - "N346D", - "Y447H" - ], - "nuc": [ - "G344T", - "G1259A", - "A1260C", - "C1367T", - "A1571G", - "T1643G", - "A1994C", - "C2039T", - "G2062A", - "G2246A", - "C2357T", - "T2477C", - "C2504T", - "C2507T", - "G2780T", - "C2849T", - "C3317T", - "T3374C", - "C3380T", - "C3383T", - "A3503G", - "T3818C", - "C3869T", - "A4022G", - "C4061T", - "C4106T", - "C4124T", - "C4250T", - "C4307T", - "C4430T", - "A4514T", - "C4886A", - "G5066A", - "A5067G", - "T5370C", - "A5669G", - "C6398T", - "C6897T", - "G6914A", - "C7028T", - "T7187C", - "A7346G", - "A7409G", - "C7620T", - "A8109C", - "C8452T", - "C8518T", - "T8734C", - "G8779A", - "A9019G", - "T9034C", - "C9310T", - "A9589G", - "C9682T", - "C9778T", - "C9907T", - "C10048T", - "T10366C", - "C10648T", - "C10699T", - "T10861C", - "T11287C" - ] - } - }, - "name": "KC344507.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.2336144458819019, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1997.4561643835616, - 1997.4561643835616 - ], - "value": 1997.4561643835616 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: V416I; nsP2: R788I" - }, - "mutations": { - "nsP1": [ - "V416I" - ], - "nsP2": [ - "R788I" - ], - "nuc": [ - "G1290A", - "G4012T", - "G4187A", - "A5471G", - "G5591A", - "A5759G", - "C6242A", - "A6461G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: R222H, A508V; nsP2: S198C, E336D; nsP3: K26R, T335P, S407F, S451R, V521A" - }, - "mutations": { - "nsP1": [ - "R222H", - "A508V" - ], - "nsP2": [ - "S198C", - "E336D" - ], - "nsP3": [ - "K26R", - "T335P", - "S407F", - "S451R", - "V521A" - ], - "nuc": [ - "C35A", - "T143C", - "G314A", - "C425T", - "G709A", - "A806T", - "C1106T", - "C1133T", - "C1567T", - "C1991T", - "C2171A", - "A2213G", - "A2241T", - "T2588C", - "G2603T", - "G2657T", - "C2949T", - "C3050A", - "T3195C", - "T3281C", - "C3359T", - "T3671C", - "C3774T", - "T3812C", - "A4108G", - "A4136G", - "A4238G", - "C4244T", - "G4463A", - "G4718A", - "C4751T", - "G4904A", - "A4919G", - "T4940A", - "A5034C", - "C5251T", - "C5384A", - "G5396T", - "A5496C", - "A5544C", - "C5582T", - "T5593C", - "C6029T", - "T6044C", - "C6380T", - "C6383T", - "T6410C", - "C6815T", - "C6827T", - "G6872A", - "T7091C", - "C7172T", - "C7316T", - "C7849T", - "C8158T", - "C8194T", - "G8344A", - "C8515T", - "T8536C", - "C8740T", - "C8893T", - "T9055C", - "C9091T", - "C9163T", - "A9205T", - "C9344T", - "C9352T", - "C9397T", - "A9442G", - "A9451C", - "C9643T", - "T9728C", - "C9940T", - "C10468T", - "C10492T", - "G10957A", - "C11119T", - "T11365G" - ] - } - }, - "name": "MF590066.1", - "node_attrs": { - "author": { - "author": "Juarez,D., Guevara,C., Wiley,M., Torre,A., Palacios,G., Halsey,E.S., Ampuero,S. and Leguia,M.", - "value": "Juarez,D., Guevara,C., Wiley,M., Torre,A., Palacios,G., Halsey,E.S., Ampuero,S. and Leguia,M." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23711071588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2013.4808219178083, - 2013.4808219178083 - ], - "value": 2013.4808219178083 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2013": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2013" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: V179I; nsP1: N458I", - "GRI Lineage Root": "C.0" - }, - "mutations": { - "E2": [ - "V179I" - ], - "nsP1": [ - "N458I" - ], - "nuc": [ - "A1417T", - "T1967C", - "A2012G", - "C2033T", - "C3146T", - "T3371C", - "C3698A", - "T3756C", - "C3947T", - "G4559A", - "T4833C", - "G5045A", - "G5537A", - "T6518C", - "C7487T", - "T8737A", - "A9037T", - "G9098A", - "C9241T", - "T9529C", - "C9721T", - "G9829A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP4: T604I" - }, - "mutations": { - "nsP4": [ - "T604I" - ], - "nuc": [ - "T1334C", - "A3581T", - "C6704T", - "C7513T", - "A8668G" - ] - } - }, - "name": "KC344526.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.23260327588190188, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1994.7072156665874, - 1994.9986301369863 - ], - "value": 1994.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1994": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1994" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0" - }, - "GRI Lineage Level 3": { - "value": "C.0" - }, - "GRI Lineage Level 4": { - "value": "C.0" - }, - "GRI Lineage Level 5": { - "value": "C.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T4274C", - "C5564T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2312T", - "T3935C", - "C5138T", - "A5144G", - "T5147C", - "T5150C", - "C5723T" - ] - } - }, - "name": "KC344490.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23295269588190187, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1995.4412365328196, - 1995.9986301369863 - ], - "value": 1995.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0" - }, - "GRI Lineage Level 3": { - "value": "C.0" - }, - "GRI Lineage Level 4": { - "value": "C.0" - }, - "GRI Lineage Level 5": { - "value": "C.0" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "C.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: G193R; E3: P41L; nsP2: H614R; nsP3: I218M" - }, - "mutations": { - "E2": [ - "G193R" - ], - "E3": [ - "P41L" - ], - "nsP2": [ - "H614R" - ], - "nsP3": [ - "I218M" - ], - "nuc": [ - "T1535G", - "C2883T", - "A3490G", - "T3935A", - "A4685G", - "A7744T", - "G8341A", - "C8508T", - "C8614T", - "C9025T", - "G9140A", - "T10459C", - "T10849A", - "T11354G" - ] - } - }, - "name": "DQ390224.2", - "node_attrs": { - "author": { - "author": "Anishchenko,M., Bowen,R.A., Paessler,S., Austgen,L., Greene,I.P. and Weaver,S.C.", - "value": "Anishchenko,M., Bowen,R.A., Paessler,S., Austgen,L., Greene,I.P. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23356870588190187, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2006.1, - 2006.1 - ], - "value": 2006.1 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2006": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2006" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0.0" - }, - "GRI Lineage Level 3": { - "value": "C.0.0" - }, - "GRI Lineage Level 4": { - "value": "C.0.0" - }, - "GRI Lineage Level 5": { - "value": "C.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP4: N233D" - }, - "mutations": { - "nsP4": [ - "N233D" - ], - "nuc": [ - "C2927A", - "C3575T", - "G4196A", - "T6191C", - "A6399G", - "T6473C", - "C6635T", - "G7076T", - "T9868C", - "A10036T" - ] - } - }, - "name": "KC344504.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.23323556588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1998.0013698630137, - 1998.7820652782134 - ], - "value": 1998.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1998": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1998" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0.0" - }, - "GRI Lineage Level 3": { - "value": "C.0.0" - }, - "GRI Lineage Level 4": { - "value": "C.0.0" - }, - "GRI Lineage Level 5": { - "value": "C.0.0" - } - } - } - ], - "name": "NODE_0000162", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.999999210048187 - }, - "entropy": 0.000012983735368302536, - "value": "Peru" - }, - "div": 0.23233916588190187, - "num_date": { - "confidence": [ - 1997.7329732338646, - 1998.610227769681 - ], - "value": 1997.9171961117818 - }, - "region": { - "confidence": { - "LA,C": 0.9999999886152389 - }, - "entropy": 2.2449057845017234e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1994": 0.008430505227526221, - "1995": 0.0401838688713395, - "1998": 0.8764638114580517, - "2006": 0.003851699778023005 - }, - "entropy": 0.7628298522409024, - "value": "1998" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0.0" - }, - "GRI Lineage Level 3": { - "value": "C.0.0" - }, - "GRI Lineage Level 4": { - "value": "C.0.0" - }, - "GRI Lineage Level 5": { - "value": "C.0.0" - } - } - } - ], - "name": "NODE_0000079", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999099093163 - }, - "entropy": 0.000001670833418207494, - "value": "Peru" - }, - "div": 0.23233916588190187, - "num_date": { - "confidence": [ - 1995.27453587579, - 1995.9501757866212 - ], - "value": 1995.757276849644 - }, - "region": { - "confidence": { - "LA,C": 0.999999998646196 - }, - "entropy": 2.9573524141986103e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1994": 0.14082974526910966, - "1995": 0.7720203703716306, - "1997": 0.003393681393664756, - "1998": 0.03504546583237702 - }, - "entropy": 0.943280660689659, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0" - }, - "GRI Lineage Level 3": { - "value": "C.0" - }, - "GRI Lineage Level 4": { - "value": "C.0" - }, - "GRI Lineage Level 5": { - "value": "C.0" - } - } - } - ], - "name": "NODE_0000078", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999771967345 - }, - "entropy": 4.492959881656687e-7, - "value": "Peru" - }, - "div": 0.23216445588190188, - "num_date": { - "confidence": [ - 1994.9134112455536, - 1994.9828507671825 - ], - "value": 1994.9533539571169 - }, - "region": { - "confidence": { - "LA,C": 0.9999999998683808 - }, - "entropy": 3.1783775958102396e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1994": 0.8193067622176707, - "1995": 0.11668240385611242, - "1997": 0.012721148344344483, - "1998": 0.0060916472439495484 - }, - "entropy": 0.8109447326950299, - "value": "1994" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0" - }, - "GRI Lineage Level 3": { - "value": "C.0" - }, - "GRI Lineage Level 4": { - "value": "C.0" - }, - "GRI Lineage Level 5": { - "value": "C.0" - } - } - } - ], - "name": "NODE_0000077", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999940624601308 - }, - "entropy": 0.00008526596328841911, - "value": "Peru" - }, - "div": 0.23022485588190186, - "num_date": { - "confidence": [ - 1994.6134988109277, - 1994.7999606523608 - ], - "value": 1994.7179134488763 - }, - "region": { - "confidence": { - "LA,C": 0.9999999917648887 - }, - "entropy": 1.6487276997585703e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1994": 0.7193503574706899, - "1995": 0.10353210222223314, - "1997": 0.03899042220118182, - "1998": 0.007609134925570846 - }, - "entropy": 1.3942430316841696, - "value": "1994" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - } - ], - "name": "NODE_0000076", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9998491842509538 - }, - "entropy": 0.00170928427657767, - "value": "Peru" - }, - "div": 0.22875794588190188, - "num_date": { - "confidence": [ - 1994.1095235663558, - 1994.4847814968928 - ], - "value": 1994.3090157098807 - }, - "region": { - "confidence": { - "LA,C": 0.9999998607782372 - }, - "entropy": 0.0000023970315003718826, - "value": "LA,C" - }, - "year": { - "confidence": { - "1994": 0.5711049829527265, - "1995": 0.08384910980553538, - "1997": 0.08891013334667282, - "1998": 0.009505905336396395 - }, - "entropy": 2.064377057522005, - "value": "1994" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - } - ], - "name": "NODE_0000071", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.997725143967084, - "Peru": 0.0011044084648169365 - }, - "entropy": 0.019129331535784347, - "value": "Panama" - }, - "div": 0.21927132588190187, - "num_date": { - "confidence": [ - 1960.916681784841, - 1961.2142629321531 - ], - "value": 1961.075224718839 - }, - "region": { - "confidence": { - "LA,C": 0.9999997658083583 - }, - "entropy": 0.00000389938556712597, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.003946111375046251, - "1961": 0.8870557241587179, - "1962": 0.008157510837433777, - "1977": 0.003258389372668335 - }, - "entropy": 0.7822626451865655, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - } - ], - "name": "NODE_0000064", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.0013966057676074672, - "Panama": 0.996710160936459, - "Peru": 0.0011713773038811409 - }, - "entropy": 0.027296845855836423, - "value": "Panama" - }, - "div": 0.21466611588190188, - "num_date": { - "confidence": [ - 1959.7552381707126, - 1960.3404729176086 - ], - "value": 1960.123029890096 - }, - "region": { - "confidence": { - "LA,C": 0.9999968575027255 - }, - "entropy": 0.00004431763106068784, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.015087275175583587, - "1961": 0.5260910229218834, - "1962": 0.021348047274137086, - "1977": 0.012949574497198463 - }, - "entropy": 2.509486986387267, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A4805C", - "A5357C", - "G10195T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: R68G, N104S, E154A; E1: Y72H, I142T, T162I, A226S, Q242H, E292D, A343V; E2: Y127H, S177R, V179I, V316I, A383S, T386I, L410I; E3: A28S, P54S; nsP1: M471L; nsP2: T122I, T153A, I446M, Y503H, T506M, T537S, N592S, V626I, L641M, E656D, I736V; nsP3: T197I, S348P, T349I, E350A, L358P, A363E, R367E, Q392H, I413V, D422G, L430S, A433T, A439S, A440V, N445D, M452L, N468I, T495N, I503F, L511P, P513S, S520A, A521V; nsP4: Y597H" - }, - "mutations": { - "CP": [ - "R68G", - "N104S", - "E154A" - ], - "E1": [ - "Y72H", - "I142T", - "T162I", - "A226S", - "Q242H", - "E292D", - "A343V" - ], - "E2": [ - "Y127H", - "S177R", - "V179I", - "V316I", - "A383S", - "T386I", - "L410I" - ], - "E3": [ - "A28S", - "P54S" - ], - "nsP1": [ - "M471L" - ], - "nsP2": [ - "T122I", - "T153A", - "I446M", - "Y503H", - "T506M", - "T537S", - "N592S", - "V626I", - "L641M", - "E656D", - "I736V" - ], - "nsP3": [ - "T197I", - "S348P", - "T349I", - "E350A", - "L358P", - "A363E", - "R367E", - "Q392H", - "I413V", - "D422G", - "L430S", - "A433T", - "A439S", - "A440V", - "N445D", - "M452L", - "N468I", - "T495N", - "I503F", - "L511P", - "P513S", - "S520A", - "A521V" - ], - "nsP4": [ - "Y597H" - ], - "nuc": [ - "A26C", - "C65T", - "T266A", - "G293T", - "A335T", - "C356T", - "C426T", - "G497A", - "A509G", - "A524G", - "A626C", - "A674T", - "G716A", - "G731A", - "T755C", - "T758C", - "T770C", - "T773G", - "C788T", - "C920T", - "T935C", - "T981C", - "G1034A", - "C1037T", - "T1052C", - "G1121A", - "C1139T", - "C1151T", - "A1163G", - "T1190C", - "A1265G", - "C1272T", - "T1340C", - "A1349G", - "A1391G", - "C1412T", - "T1422C", - "C1430T", - "A1442G", - "A1455C", - "C1458T", - "G1478A", - "C1502T", - "G1544A", - "T1547C", - "C1604A", - "C1608T", - "C1652T", - "T1694C", - "C1697T", - "G1703A", - "T1718C", - "C1721T", - "T1733A", - "A1736G", - "C1761T", - "T1772A", - "T1811C", - "T1829C", - "C1844T", - "G1859T", - "T1922C", - "C1956T", - "A1973C", - "T1976C", - "T2006C", - "C2009T", - "C2014T", - "T2051C", - "A2106G", - "A2108T", - "A2297G", - "T2364C", - "C2498T", - "T2510C", - "G2555A", - "T2579C", - "C2615T", - "A2633G", - "G2651A", - "T2681C", - "C2690T", - "A2696C", - "C2711T", - "C2813T", - "G2816A", - "C2849T", - "C2886T", - "T2906C", - "C2930T", - "T2966C", - "C2981A", - "G2984A", - "A2987G", - "C3014T", - "C3026T", - "C3044T", - "C3050T", - "T3093C", - "T3113C", - "T3156C", - "T3158C", - "C3166T", - "T3176A", - "A3182G", - "C3200T", - "A3245T", - "T3248C", - "A3258T", - "T3281C", - "T3293C", - "T3296C", - "C3299T", - "G3302A", - "C3353T", - "A3362G", - "T3371G", - "A3374G", - "T3386C", - "A3389G", - "C3407T", - "T3410C", - "C3417T", - "A3424G", - "A3449G", - "C3458T", - "T3473C", - "T3509C", - "G3525A", - "T3548C", - "T3570A", - "G3602A", - "G3611T", - "G3617T", - "C3626T", - "T3647C", - "C3671T", - "C3674T", - "C3677A", - "T3683C", - "T3716C", - "T3743C", - "C3774T", - "T3815C", - "C3833T", - "A3855G", - "G3860A", - "C3899T", - "T3920A", - "G3923A", - "G4058A", - "C4121T", - "G4157A", - "T4169C", - "C4247T", - "G4262A", - "C4304T", - "C4322T", - "C4334T", - "A4400G", - "T4404C", - "G4406A", - "C4538T", - "T4562C", - "A4565G", - "C4569T", - "T4595C", - "C4616T", - "C4621T", - "C4640T", - "T4709C", - "A4736G", - "A4778G", - "C4790T", - "C4841T", - "G4868A", - "T4886C", - "G4988A", - "T5003C", - "T5006C", - "A5033G", - "C5069T", - "T5073C", - "C5077T", - "A5080C", - "T5104C", - "C5119A", - "A5120G", - "C5123T", - "G5126A", - "A5130G", - "G5131A", - "T5138A", - "A5141G", - "C5147T", - "G5159A", - "T5174C", - "G5183A", - "C5184T", - "G5198A", - "G5207T", - "G5210A", - "C5261T", - "A5268G", - "A5296G", - "C5315T", - "C5319T", - "T5320C", - "G5328A", - "T5330C", - "C5333T", - "G5346T", - "A5348T", - "C5350T", - "A5364G", - "T5369C", - "A5385T", - "A5420G", - "A5434T", - "T5450C", - "T5474C", - "C5480T", - "A5484C", - "C5513T", - "C5515A", - "A5538T", - "T5543A", - "T5563C", - "C5568T", - "T5589G", - "C5593T", - "T5615C", - "T5633C", - "T5642C", - "A5645T", - "T5657C", - "A5678G", - "T5720C", - "T5766C", - "A5837G", - "C5841T", - "C5862T", - "G5864A", - "T5876C", - "G5897A", - "T5942C", - "T5993C", - "T6005C", - "T6011C", - "T6041C", - "C6059T", - "C6084T", - "T6125C", - "A6128G", - "C6144T", - "C6158T", - "C6161A", - "T6167C", - "C6179T", - "T6197C", - "C6209A", - "T6230C", - "A6245G", - "G6251A", - "T6272C", - "C6293A", - "A6308T", - "C6347T", - "C6437T", - "A6479G", - "A6515G", - "T6527C", - "T6531C", - "A6569G", - "C6620G", - "C6651T", - "A6659C", - "C6671T", - "C6680T", - "T6687C", - "G6719A", - "T6758C", - "T6770C", - "G6776A", - "T6788A", - "T6815C", - "G6821T", - "T6833C", - "C6839T", - "C6842T", - "C6857T", - "T6878C", - "G6887A", - "C6989T", - "C7025T", - "A7034G", - "T7050C", - "A7052G", - "G7058A", - "C7067T", - "A7082G", - "G7109A", - "T7154C", - "C7163T", - "C7187T", - "G7190A", - "A7202G", - "T7226C", - "A7253G", - "C7275T", - "C7284T", - "T7295C", - "A7310G", - "C7328T", - "C7352T", - "C7367A", - "A7376G", - "A7424G", - "C7427T", - "T7436C", - "C7464T", - "T7491C", - "T7508C", - "G7588T", - "G7627A", - "G7714A", - "G7723A", - "A7744G", - "C7747T", - "A7763G", - "G7765A", - "G7768A", - "G7780A", - "C7795T", - "G7822C", - "G7828A", - "G7840A", - "G7855A", - "G7864A", - "A7872G", - "C7873T", - "A7897C", - "A7942G", - "T7981G", - "G7996C", - "T8000C", - "A8022C", - "C8038T", - "A8053G", - "C8074T", - "T8098C", - "G8101A", - "T8122C", - "G8131A", - "T8158C", - "C8161T", - "T8170C", - "A8212G", - "C8236T", - "C8326T", - "C8329T", - "T8362C", - "C8398T", - "T8419C", - "C8437T", - "G8468T", - "A8470C", - "C8476T", - "G8524A", - "T8539C", - "C8546T", - "A8551C", - "A8558C", - "A8563G", - "C8623T", - "A8653T", - "C8680T", - "T8704C", - "T8722C", - "T8737C", - "C8743T", - "C8776T", - "C8782T", - "T8785C", - "G8797A", - "A8812C", - "C8813T", - "C8815A", - "C8818T", - "T8833C", - "T8845C", - "T8854C", - "T8857C", - "T8860C", - "G8878A", - "A8881T", - "C8893T", - "C8926T", - "C8929T", - "T8942C", - "T8959C", - "A8974G", - "C8980T", - "T8983G", - "C8989A", - "A8995G", - "G9040A", - "T9052C", - "T9094A", - "G9098A", - "T9100C", - "T9104C", - "C9148T", - "G9157A", - "C9187T", - "C9199T", - "A9205G", - "A9268G", - "T9277C", - "A9289G", - "A9328G", - "T9385A", - "C9394T", - "T9400C", - "A9442G", - "C9481T", - "G9509A", - "A9532G", - "G9538A", - "A9572C", - "T9634C", - "A9679C", - "G9710T", - "C9720T", - "C9751T", - "T9757C", - "T9775C", - "C9781T", - "G9790A", - "C9791A", - "C9850T", - "C9899T", - "T9922C", - "A10061C", - "C10072T", - "A10075G", - "T10084C", - "T10130C", - "A10171G", - "A10174G", - "C10180T", - "T10204C", - "T10214C", - "A10276T", - "C10300T", - "T10321C", - "C10354T", - "C10366T", - "C10402T", - "T10425C", - "A10450G", - "C10465T", - "C10468T", - "C10477T", - "C10485T", - "T10492C", - "A10513G", - "T10558C", - "T10570C", - "C10606T", - "A10612G", - "C10624T", - "T10642C", - "G10676T", - "A10726C", - "C10759T", - "A10789G", - "T10810C", - "T10856C", - "T10861C", - "A10876C", - "A10891T", - "C10903T", - "C10912T", - "G10981A", - "G10996A", - "A11002G", - "T11011C", - "C11028T", - "C11036T", - "C11059T", - "C11074T", - "C11086T", - "C11095T", - "T11119C", - "C11122A", - "G11125A", - "C11158T", - "T11179C", - "C11236A", - "A11257G", - "C11296T", - "C11311T", - "G11328A", - "T11359G", - "G11361A", - "C11364T", - "C11378A" - ] - } - }, - "name": "KC344476.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.24104578588190187, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2003.0013698630137, - 2003.898904109589 - ], - "value": 2003.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2003": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A3260T" - ] - }, - "labels": { - "GRI Lineage Root": "A" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: K37R; CP: R68K, P71S; E2: E75K, T213K, A214T, V378A, K391R, S395A; nsP2: R328K, E340V, I679V; nsP3: E337D, A357P, V361E, A363E, E438G, A440T, S487C, A516T, A521V" - }, - "mutations": { - "6k": [ - "K37R" - ], - "CP": [ - "R68K", - "P71S" - ], - "E2": [ - "E75K", - "T213K", - "A214T", - "V378A", - "K391R", - "S395A" - ], - "nsP2": [ - "R328K", - "E340V", - "I679V" - ], - "nsP3": [ - "E337D", - "A357P", - "V361E", - "A363E", - "E438G", - "A440T", - "S487C", - "A516T", - "A521V" - ], - "nuc": [ - "A26G", - "T272C", - "C326T", - "C356T", - "C371T", - "A509G", - "C545T", - "G731A", - "T755C", - "T1116C", - "C1139T", - "A1163G", - "G1184A", - "T1190C", - "C1301T", - "C1304T", - "A1349G", - "C1458T", - "A1463G", - "T1493C", - "A1571T", - "T1694C", - "C1697T", - "A1724T", - "A1736G", - "G1757A", - "C1761T", - "T1772C", - "C1841A", - "A1937T", - "A1994T", - "T2051C", - "G2168A", - "G2264A", - "C2291T", - "A2300T", - "C2429T", - "C2453T", - "A2489C", - "C2507T", - "T2510C", - "G2552A", - "G2555A", - "T2579C", - "G2632A", - "C2648T", - "A2668T", - "T2681C", - "A2696T", - "C2813T", - "C2849T", - "T2906C", - "G2954T", - "T2963C", - "A2993G", - "A3062G", - "G3071A", - "T3113C", - "A3116T", - "C3161T", - "C3230T", - "T3296C", - "C3350T", - "A3374G", - "C3413T", - "T3443C", - "C3534T", - "G3566A", - "T3647C", - "C3659T", - "C3671T", - "C3677A", - "A3684G", - "T3698C", - "T3716C", - "C3737T", - "C3800T", - "C3875T", - "A3914G", - "T3983A", - "C3998T", - "G4187A", - "G4241A", - "A4265G", - "A4313G", - "G4547A", - "G4559T", - "T4625C", - "G4634A", - "T4709C", - "C4769T", - "A4778G", - "G4958A", - "G4988A", - "C5000T", - "C5010A", - "C5018T", - "A5042C", - "G5057A", - "G5100C", - "T5113A", - "C5119A", - "A5120G", - "A5141G", - "T5153C", - "T5174C", - "C5192T", - "T5243C", - "C5252T", - "C5309A", - "A5344G", - "G5349A", - "C5384T", - "A5453G", - "A5490T", - "T5501C", - "T5540C", - "G5577A", - "C5593T", - "A5597G", - "T5603C", - "T5615C", - "C5693T", - "T5720C", - "T5766C", - "C5841T", - "C5862T", - "G5864A", - "T5993C", - "T6035C", - "T6041C", - "C6074T", - "C6084T", - "A6092G", - "C6144T", - "C6161A", - "T6170C", - "T6230C", - "G6251A", - "A6263T", - "T6272C", - "C6323T", - "T6362G", - "C6398T", - "T6455C", - "T6473C", - "A6533G", - "G6575A", - "T6687C", - "T6707G", - "C6725T", - "C6740T", - "T6770A", - "T6779C", - "C6794T", - "T6815C", - "T6878C", - "C6953T", - "C6989T", - "C7025T", - "C7031T", - "A7052G", - "G7058A", - "C7163T", - "C7187T", - "C7328T", - "A7349G", - "C7352T", - "A7382T", - "T7400C", - "A7576G", - "G7764A", - "C7772T", - "G7780A", - "A7783G", - "G7819A", - "G7840A", - "A7942G", - "T7951C", - "C7955T", - "T7969A", - "C7984T", - "T8080C", - "G8131A", - "A8212G", - "T8353C", - "C8407T", - "C8437T", - "C8476T", - "A8554G", - "T8566C", - "C8632A", - "T8662C", - "G8671A", - "C8692T", - "T8737C", - "G8786A", - "G8797A", - "C8818T", - "T8851C", - "T8860C", - "T8869C", - "A8917C", - "A8935G", - "C8980T", - "C9169T", - "C9201A", - "G9203A", - "A9253G", - "T9262C", - "C9265T", - "A9268G", - "C9314T", - "C9331T", - "G9379A", - "C9404A", - "T9454C", - "T9478C", - "T9529C", - "C9685T", - "T9696C", - "C9718T", - "A9735G", - "T9746G", - "C9781T", - "G9790A", - "C9796T", - "T9922C", - "A9942G", - "C10051T", - "C10120T", - "T10204C", - "A10270T", - "T10321C", - "C10354T", - "C10366T", - "C10432T", - "C10465T", - "A10495G", - "C10522T", - "C10561T", - "T10690C", - "G10747A", - "C10759T", - "T10810C", - "T10861C", - "A10927T", - "T10960C", - "C11059T", - "T11062C", - "C11122T", - "C11158T", - "C11173T", - "A11275G", - "C11331T", - "T11333C", - "T11357C", - "C11407T", - "C11412T", - "C11417T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: S325P; E2: H85Y, T120I, T187I; nsP1: T203A, A207S, D436G; nsP2: H244Y; nsP3: A228V", - "GRI Lineage Root": "A.8" - }, - "mutations": { - "E1": [ - "S325P" - ], - "E2": [ - "H85Y", - "T120I", - "T187I" - ], - "nsP1": [ - "T203A", - "A207S", - "D436G" - ], - "nsP2": [ - "H244Y" - ], - "nsP3": [ - "A228V" - ], - "nuc": [ - "C233T", - "A651G", - "G663T", - "T758C", - "A1351G", - "T1643A", - "T2174C", - "C2379T", - "C2564T", - "A2633G", - "T2696C", - "C3053T", - "C3200T", - "C3458T", - "T3779C", - "T3935A", - "T4424A", - "C4714T", - "C5042T", - "T5312C", - "T5474C", - "T6026C", - "G6707A", - "T7131C", - "T7184C", - "A7322G", - "T8170C", - "C8816T", - "C8922T", - "C9123T", - "A9712G", - "T9871C", - "C10396T", - "C10792T", - "T10973C", - "C11418T", - "A11437T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: Q159R, S182I, K213R; nsP3: L492Q" - }, - "mutations": { - "E2": [ - "Q159R", - "S182I", - "K213R" - ], - "nsP3": [ - "L492Q" - ], - "nuc": [ - "G2441A", - "T5506A", - "A7034G", - "A9039G", - "G9108T", - "A9201G", - "G9514A" - ] - } - }, - "name": "KU059753.1", - "node_attrs": { - "author": { - "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.2330624158819019, - "host": { - "value": "Equus asinus x Equus caballus" - }, - "num_date": { - "confidence": [ - 1942.2481121134056, - 1942.9986301369863 - ], - "value": 1942.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1942": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1942" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.8" - }, - "GRI Lineage Level 2": { - "value": "A.8" - }, - "GRI Lineage Level 3": { - "value": "A.8" - }, - "GRI Lineage Level 4": { - "value": "A.8" - }, - "GRI Lineage Level 5": { - "value": "A.8" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: I120T, T221A, V394D, L410F; nsP2: Y244H; nsP3: A482V; nsP4: A146S" - }, - "mutations": { - "E2": [ - "I120T", - "T221A", - "V394D", - "L410F" - ], - "nsP2": [ - "Y244H" - ], - "nsP3": [ - "A482V" - ], - "nsP4": [ - "A146S" - ], - "nuc": [ - "T1619C", - "C2174T", - "T2379C", - "C2501T", - "G3167A", - "C3779T", - "G4571A", - "A4934G", - "C5476T", - "G6138T", - "A6584G", - "C7184T", - "C7888T", - "C8149G", - "C8170T", - "C8182T", - "G8272T", - "T8922C", - "A9224G", - "T9744A", - "C9791T", - "C9871T", - "T10396C", - "T10792C", - "C11083T" - ] - } - }, - "name": "KC344430.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pfeffer,M., Marriott,K., Kang,W., Kinney,R.M., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pfeffer,M., Marriott,K., Kang,W., Kinney,R.M., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.2327177958819019, - "host": { - "value": "Equus caballus" - }, - "num_date": { - "confidence": [ - 1971.0150684931507, - 1971.0150684931507 - ], - "value": 1971.0150684931507 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1971": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.8" - }, - "GRI Lineage Level 2": { - "value": "A.8" - }, - "GRI Lineage Level 3": { - "value": "A.8" - }, - "GRI Lineage Level 4": { - "value": "A.8" - }, - "GRI Lineage Level 5": { - "value": "A.8" - } - } - } - ], - "name": "NODE_0000042", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.00466970548163329, - "Peru": 0.9950332789386218 - }, - "entropy": 0.033108480359922164, - "value": "Peru" - }, - "div": 0.2314612458819019, - "num_date": { - "confidence": [ - 1941.8232121788153, - 1942.7908692556084 - ], - "value": 1942.550486918848 - }, - "region": { - "confidence": { - "LA,C": 0.9999998173513653 - }, - "entropy": 0.0000030951279910330726, - "value": "LA,C" - }, - "year": { - "confidence": { - "1938": 0.02305199629263584, - "1942": 0.7973702880093335, - "1943": 0.004658540304221339, - "1971": 0.005519039616938387 - }, - "entropy": 1.2629188115634873, - "value": "1942" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.8" - }, - "GRI Lineage Level 2": { - "value": "A.8" - }, - "GRI Lineage Level 3": { - "value": "A.8" - }, - "GRI Lineage Level 4": { - "value": "A.8" - }, - "GRI Lineage Level 5": { - "value": "A.8" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: V48M; CP: P62S; E2: A147V, A192V, M408I, L410F; nsP1: I487V; nsP2: T647M; nsP3: P343S, V359I, R450K; nsP4: R68K, P563S" - }, - "mutations": { - "6k": [ - "V48M" - ], - "CP": [ - "P62S" - ], - "E2": [ - "A147V", - "A192V", - "M408I", - "L410F" - ], - "nsP1": [ - "I487V" - ], - "nsP2": [ - "T647M" - ], - "nsP3": [ - "P343S", - "V359I", - "R450K" - ], - "nsP4": [ - "R68K", - "P563S" - ], - "nuc": [ - "A101G", - "C284T", - "C689T", - "C761T", - "G1259A", - "A1503G", - "A1850T", - "T2105C", - "C2501T", - "A3104G", - "G3455A", - "C3589T", - "C4031T", - "C4088T", - "C4244A", - "A4661G", - "A4733G", - "T4847C", - "C4974T", - "C5058T", - "G5106A", - "G5380A", - "G5905A", - "T6167A", - "C6879T", - "T7154C", - "C7178T", - "C7389T", - "C7745T", - "A8053G", - "T8260C", - "C9003T", - "C9138T", - "A9328G", - "G9448A", - "G9616A", - "C9739T", - "G9787A", - "C9791T", - "G9974A", - "C10606T", - "A10711T", - "C10846T", - "C10939T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C7208T", - "C9397T", - "T11386C", - "T11409C", - "T11414C", - "C11418T" - ] - }, - "labels": { - "GRI Lineage Root": "A.7" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: S21T, A497R; nsP2: A16D; nsP3: T260S" - }, - "mutations": { - "nsP1": [ - "S21T", - "A497R" - ], - "nsP2": [ - "A16D" - ], - "nsP3": [ - "T260S" - ], - "nuc": [ - "G106C", - "C107G", - "G1533C", - "C1534G", - "C1696A", - "A4809T" - ] - } - }, - "name": "J04332.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W.", - "value": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W." - }, - "country": { - "confidence": { - "Colombia": 0.14425757934332467, - "Ecuador": 0.055637847248429524, - "Panama": 0.06056274281933376, - "Peru": 0.2213069315140419 - }, - "entropy": 2.4767394884329015, - "value": "Peru" - }, - "div": 0.23434797588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1989.0698630136985, - 1989.0698630136985 - ], - "value": 1989.0698630136985 - }, - "region": { - "confidence": { - "?": 0.01768486832452348, - "AUSNZ": 0.04188969854772781, - "LA,C": 0.9404254331277488 - }, - "entropy": 0.2620270185959693, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1989": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1989" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.7" - }, - "GRI Lineage Level 2": { - "value": "A.7" - }, - "GRI Lineage Level 3": { - "value": "A.7" - }, - "GRI Lineage Level 4": { - "value": "A.7" - }, - "GRI Lineage Level 5": { - "value": "A.7" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "L01442.2", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Johnson,B.J., Brown,V.L. and Trent,D.W.", - "value": "Kinney,R.M., Johnson,B.J., Brown,V.L. and Trent,D.W." - }, - "country": { - "confidence": { - "Australia": 0.01780569771386583, - "Colombia": 0.2884138012696835, - "Panama": 0.016483531337700752, - "Peru": 0.5720368868224519 - }, - "entropy": 1.2956664566142853, - "value": "Peru" - }, - "div": 0.23382419588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1943.202551797086, - 1943.9986301369863 - ], - "value": 1943.9986301369863 - }, - "region": { - "confidence": { - "?": 0.0019063945278804985, - "AUSNZ": 0.0046466618138714605, - "LA,C": 0.993446943658248 - }, - "entropy": 0.0434304503008113, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1943": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1943" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.7" - }, - "GRI Lineage Level 2": { - "value": "A.7" - }, - "GRI Lineage Level 3": { - "value": "A.7" - }, - "GRI Lineage Level 4": { - "value": "A.7" - }, - "GRI Lineage Level 5": { - "value": "A.7" - } - } - } - ], - "name": "NODE_0000044", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.017506279383952116, - "Colombia": 0.2894770479712449, - "Panama": 0.016087303844093764, - "Peru": 0.5747226202126766 - }, - "entropy": 1.2816981548125417, - "value": "Peru" - }, - "div": 0.23382419588190187, - "num_date": { - "confidence": [ - 1943.144023348695, - 1943.997829139726 - ], - "value": 1943.9337493589042 - }, - "region": { - "confidence": { - "?": 0.0018330744545413248, - "AUSNZ": 0.004468541660796507, - "LA,C": 0.9936983838846621 - }, - "entropy": 0.0420112234958156, - "value": "LA,C" - }, - "year": { - "confidence": { - "1938": 0.01134349285103268, - "1942": 0.0022940916156237415, - "1943": 0.9022873108087164, - "1989": 0.002694422302961193 - }, - "entropy": 0.6855558767452586, - "value": "1943" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.7" - }, - "GRI Lineage Level 2": { - "value": "A.7" - }, - "GRI Lineage Level 3": { - "value": "A.7" - }, - "GRI Lineage Level 4": { - "value": "A.7" - }, - "GRI Lineage Level 5": { - "value": "A.7" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T11408C", - "T11413C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344516.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.010373624204937522, - "Colombia": 0.3194287620173791, - "Panama": 0.005976577591109873, - "Peru": 0.6382946206351956 - }, - "entropy": 0.8821386093194474, - "value": "Peru" - }, - "div": 0.23360149588190185, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 1938.101095890411, - 1938.9986301369863 - ], - "value": 1938.9986301369863 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1938": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1938" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: R222C", - "GRI Lineage Root": "A.1" - }, - "mutations": { - "nsP1": [ - "R222C" - ], - "nuc": [ - "C708T", - "A4151G", - "A7034G", - "A10453G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: L161I; E2: K7N, H85Y, T120R, V192D, T296I; nsP1: C222R; nsP2: A16D" - }, - "mutations": { - "E1": [ - "L161I" - ], - "E2": [ - "K7N", - "H85Y", - "T120R", - "V192D", - "T296I" - ], - "nsP1": [ - "C222R" - ], - "nsP2": [ - "A16D" - ], - "nuc": [ - "G3A", - "T708C", - "C1696A", - "G4151A", - "G7034A", - "G8584T", - "C8816T", - "C8922G", - "T9138A", - "C9450T", - "G10453A", - "T10481A", - "A10633T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: H401L, P403Q, V406A, S407A, S408N, S409Q, W411T, S412A" - }, - "mutations": { - "nsP3": [ - "H401L", - "P403Q", - "V406A", - "S407A", - "S408N", - "S409Q", - "W411T", - "S412A" - ], - "nuc": [ - "T5231A", - "A5233T", - "C5239A", - "C5243A", - "T5246G", - "T5248C", - "T5250G", - "T5252G", - "G5254A", - "T5256C", - "C5257A", - "T5262A", - "G5263C", - "G5264A", - "T5265G", - "T5276C" - ] - } - }, - "name": "KJ410017.1", - "node_attrs": { - "author": { - "author": "Medina,G., Garzaro,D.J., Barrios,M., Auguste,A.J., Weaver,S.C. and Pujol,F.H.", - "value": "Medina,G., Garzaro,D.J., Barrios,M., Auguste,A.J., Weaver,S.C. and Pujol,F.H." - }, - "country": { - "confidence": { - "Australia": 0.07426328418829192, - "Colombia": 0.5044105833591042, - "Peru": 0.042635038405964075, - "USA": 0.23219883023406812 - }, - "entropy": 1.6282042992085435, - "value": "Colombia" - }, - "div": 0.23578520588190185, - "host": { - "value": "hamster" - }, - "num_date": { - "confidence": [ - 1981.1140898319218, - 1981.9986301369863 - ], - "value": 1981.9986301369863 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1981": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C7208T", - "T11386C" - ] - }, - "labels": { - "GRI Lineage Root": "A.1.1" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "L01443.1", - "node_attrs": { - "author": { - "author": "Johnson,B.J., Kinney,R.M., Kost,C.L. and Trent,D.W.", - "value": "Johnson,B.J., Kinney,R.M., Kost,C.L. and Trent,D.W." - }, - "country": { - "confidence": { - "Australia": 0.06418833161178493, - "Colombia": 0.3916004813969005, - "Peru": 0.04198741806483667, - "USA": 0.337550271877942 - }, - "entropy": 1.7172986059026867, - "value": "Colombia" - }, - "div": 0.23456358588190185, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1978.8585665475111, - 2000.4526421008754 - ], - "value": 1983.5701594078282 - }, - "region": { - "confidence": { - "?": 0.0023095840747616985, - "AUSNZ": 0.005628681299768753, - "LA,C": 0.9920617346254696 - }, - "entropy": 0.05108333176757568, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "XXXX": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "XXXX" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.1" - }, - "GRI Lineage Level 3": { - "value": "A.1.1" - }, - "GRI Lineage Level 4": { - "value": "A.1.1" - }, - "GRI Lineage Level 5": { - "value": "A.1.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: E523G", - "GRI Lineage Root": "A.1.1.0" - }, - "mutations": { - "nsP1": [ - "E523G" - ], - "nuc": [ - "C401G", - "A1612G", - "C1616A", - "T1619C", - "C8032A", - "T9760G", - "A10900G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "MZ399799.1", - "node_attrs": { - "author": { - "author": "Haese,N.N., May,N.A., Taft-Benz,S., Moukha-Chafiq,O., Madadi,N., Zhang,S., Karyakarte,S.D., Rodzinak,K.J., Nguyen,T.H., Denton,M., Streblow,A.D., Towers,N.A., Rasmussen,L., Bostwick,R.J., Maddry,J.A., Ananthan,S., Augelli-Szafran,C.E., Suto,M.J., Sanders,W., Moorman,N., DeFilippis,V., Heise,M.T., Pathak,A.K., Streblow,D.N. and Morrison,T.E.", - "value": "Haese,N.N., May,N.A., Taft-Benz,S., Moukha-Chafiq,O., Madadi,N., Zhang,S., Karyakarte,S.D., Rodzinak,K.J., Nguyen,T.H., Denton,M., Streblow,A.D., Towers,N.A., Rasmussen,L., Bostwick,R.J., Maddry,J.A., Ananthan,S., Augelli-Szafran,C.E., Suto,M.J., Sanders,W., Moorman,N., DeFilippis,V., Heise,M.T., Pathak,A.K., Streblow,D.N. and Morrison,T.E." - }, - "country": { - "confidence": { - "USA": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "USA" - }, - "div": 0.23517488588190189, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2017.464383561644, - 2017.464383561644 - ], - "value": 2017.464383561644 - }, - "place_of_collection": { - "value": "USA" - }, - "region": { - "confidence": { - "?": 0.012936240531307382, - "AUSNZ": 0.030912026062967855, - "LA,C": 0.9561517334057249 - }, - "entropy": 0.20658480706651844, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2017": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2017" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.1" - }, - "GRI Lineage Level 3": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "MZ399798.1", - "node_attrs": { - "author": { - "author": "Haese,N.N., May,N.A., Taft-Benz,S., Moukha-Chafiq,O., Madadi,N., Zhang,S., Karyakarte,S.D., Rodzinak,K.J., Nguyen,T.H., Denton,M., Streblow,A.D., Towers,N.A., Rasmussen,L., Bostwick,R.J., Maddry,J.A., Ananthan,S., Augelli-Szafran,C.E., Suto,M.J., Sanders,W., Moorman,N., DeFilippis,V., Heise,M.T., Pathak,A.K., Streblow,D.N. and Morrison,T.E.", - "value": "Haese,N.N., May,N.A., Taft-Benz,S., Moukha-Chafiq,O., Madadi,N., Zhang,S., Karyakarte,S.D., Rodzinak,K.J., Nguyen,T.H., Denton,M., Streblow,A.D., Towers,N.A., Rasmussen,L., Bostwick,R.J., Maddry,J.A., Ananthan,S., Augelli-Szafran,C.E., Suto,M.J., Sanders,W., Moorman,N., DeFilippis,V., Heise,M.T., Pathak,A.K., Streblow,D.N. and Morrison,T.E." - }, - "country": { - "confidence": { - "USA": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "USA" - }, - "div": 0.23517477588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2017.464383561644, - 2017.464383561644 - ], - "value": 2017.464383561644 - }, - "place_of_collection": { - "value": "USA" - }, - "region": { - "confidence": { - "?": 0.012936240531307382, - "AUSNZ": 0.030912026062967855, - "LA,C": 0.9561517334057249 - }, - "entropy": 0.20658480706651844, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2017": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2017" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.1" - }, - "GRI Lineage Level 3": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.1.0" - } - } - } - ], - "name": "NODE_0000050", - "node_attrs": { - "country": { - "confidence": { - "USA": 0.9999977775095881 - }, - "entropy": 0.00003527294019232556, - "value": "USA" - }, - "div": 0.23517253588190187, - "num_date": { - "confidence": [ - 2017.4225280160833, - 2017.464383561644 - ], - "value": 2017.4629741739946 - }, - "region": { - "confidence": { - "?": 0.012867166511410193, - "AUSNZ": 0.030750854981744454, - "LA,C": 0.9563819785068454 - }, - "entropy": 0.205733853928834, - "value": "LA,C" - }, - "year": { - "confidence": { - "2017": 0.9997411665889852 - }, - "entropy": 0.003387686029797966, - "value": "2017" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.1" - }, - "GRI Lineage Level 3": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.1.0" - } - } - } - ], - "name": "NODE_0000049", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.06407635200747262, - "Colombia": 0.39365167648065796, - "Peru": 0.041630364397539914, - "USA": 0.3386962461103129 - }, - "entropy": 1.7077828983632768, - "value": "Colombia" - }, - "div": 0.23456076588190186, - "num_date": { - "confidence": [ - 1982.4032902093827, - 1999.880822323454 - ], - "value": 1987.567017673806 - }, - "region": { - "confidence": { - "?": 0.002236418080818537, - "AUSNZ": 0.00545119505254777, - "LA,C": 0.9923123868666336 - }, - "entropy": 0.049717772867699205, - "value": "LA,C" - }, - "year": { - "confidence": { - "1981": 0.007229161680877632, - "1997": 0.002174805544663539, - "2017": 0.0028643797492738077, - "XXXX": 0.9028496959043073 - }, - "entropy": 0.688554447157697, - "value": "XXXX" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.1" - }, - "GRI Lineage Level 3": { - "value": "A.1.1" - }, - "GRI Lineage Level 4": { - "value": "A.1.1" - }, - "GRI Lineage Level 5": { - "value": "A.1.1" - } - } - } - ], - "name": "NODE_0000048", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.07402772179412888, - "Colombia": 0.5114729261989854, - "Peru": 0.041535412580516344, - "USA": 0.23378798239896054 - }, - "entropy": 1.6001167652055066, - "value": "Colombia" - }, - "div": 0.23436930588190186, - "num_date": { - "confidence": [ - 1980.737309844985, - 1981.8058150042452 - ], - "value": 1981.498208962937 - }, - "region": { - "confidence": { - "LA,C": 0.9999863697447824 - }, - "entropy": 0.0001734051235110461, - "value": "LA,C" - }, - "year": { - "confidence": { - "1981": 0.7633278366097144, - "1983": 0.008145698846853134, - "1997": 0.007682131712580283, - "XXXX": 0.019892408124973456 - }, - "entropy": 1.442791371725324, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: F253S; E2: N239I, E323G; nsP1: C222R" - }, - "mutations": { - "E1": [ - "F253S" - ], - "E2": [ - "N239I", - "E323G" - ], - "nsP1": [ - "C222R" - ], - "nuc": [ - "T708C", - "T6044C", - "G7034A", - "G9073A", - "A9279T", - "C9487T", - "A9531G", - "G10453A", - "T10758C" - ] - } - }, - "name": "AY741139.1", - "node_attrs": { - "author": { - "author": "Davis,N., Johnston,R.E., Smith,J.F., Crise,B. and Parker,M.D.", - "value": "Davis,N., Johnston,R.E., Smith,J.F., Crise,B. and Parker,M.D." - }, - "country": { - "confidence": { - "USA": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "USA" - }, - "div": 0.23421113588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2004.6707650273224, - 2004.6707650273224 - ], - "value": 2004.6707650273224 - }, - "place_of_collection": { - "value": "USA" - }, - "region": { - "confidence": { - "?": 0.013127163729794049, - "AUSNZ": 0.03135599595673253, - "LA,C": 0.9555168403134734 - }, - "entropy": 0.208925144645015, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2004": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2004" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C4709A", - "C7241T" - ] - } - }, - "name": "KR260736.1", - "node_attrs": { - "author": { - "author": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Australia" - }, - "div": 0.23412228588190184, - "host": { - "value": "Equus ferus" - }, - "num_date": { - "confidence": [ - 1967.9764695784804, - 1967.9986301369863 - ], - "value": 1967.9986301369863 - }, - "place_of_collection": { - "value": "Australia" - }, - "region": { - "confidence": { - "AUSNZ": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "AUSNZ" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344485.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23395080588190187, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 1967.9626952802282, - 1967.9986301369863 - ], - "value": 1967.988216438085 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "A.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2024T", - "C3752T", - "A5471G", - "C6272T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: V39M; CP: A56E, G77R; E2: T120K; nsP2: V745A; nsP3: L427F, T429N, S518N" - }, - "mutations": { - "6k": [ - "V39M" - ], - "CP": [ - "A56E", - "G77R" - ], - "E2": [ - "T120K" - ], - "nsP2": [ - "V745A" - ], - "nsP3": [ - "L427F", - "T429N", - "S518N" - ], - "nuc": [ - "A1C", - "T2C", - "G3A", - "A25T", - "T95G", - "C752T", - "C1625T", - "C1793T", - "T2369C", - "T2504C", - "T2825C", - "C2922T", - "G3107A", - "T3470A", - "T3883C", - "C4838T", - "C5310T", - "C5317A", - "G5584A", - "G6353A", - "C7037A", - "C7214T", - "A7560T", - "C7728A", - "G7790A", - "G7801A", - "A8443G", - "T8839C", - "C8922A", - "G9142T", - "A9226G", - "A9616C", - "G9947A", - "C10240T", - "T10507A", - "A10582G", - "C10690T", - "T10798C", - "T11388C", - "T11403A" - ] - } - }, - "name": "KU978806.1", - "node_attrs": { - "author": { - "author": "Guerbois,M., Forrester,N.L., Guzman,H., Tesh,R.B., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Guerbois,M., Forrester,N.L., Guzman,H., Tesh,R.B., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.06637196327826786, - "Colombia": 0.5400217672604049, - "Guatemala": 0.20782538179212492, - "Peru": 0.08066711972189272 - }, - "entropy": 1.5193405585975386, - "value": "Colombia" - }, - "div": 0.23780219588190185, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1973.817808219178, - 1973.817808219178 - ], - "value": 1973.817808219178 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1973": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E3: R58K", - "GRI Lineage Root": "A.1.0.2" - }, - "mutations": { - "E3": [ - "R58K" - ], - "nuc": [ - "G5240A", - "C6293T", - "G7813A", - "G8559A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP4: K593N" - }, - "mutations": { - "nsP4": [ - "K593N" - ], - "nuc": [ - "A7481T" - ] - } - }, - "name": "KU059754.1", - "node_attrs": { - "author": { - "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R.B., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R.B., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.06277172964323856, - "Colombia": 0.6162848396706313, - "Guatemala": 0.2271230624949563, - "Peru": 0.07339219126302941 - }, - "entropy": 1.1257951725964097, - "value": "Colombia" - }, - "div": 0.23473556588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1968.8210382513662, - 1968.8210382513662 - ], - "value": 1968.8210382513662 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1968": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.2" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: Q86K; E2: F278L, A384V; nsP4: S579T" - }, - "mutations": { - "CP": [ - "Q86K" - ], - "E2": [ - "F278L", - "A384V" - ], - "nsP4": [ - "S579T" - ], - "nuc": [ - "A1G", - "T2C", - "C458T", - "C3119T", - "G5237T", - "C7148T", - "T7437A", - "C7817A", - "C9397A", - "C9714T", - "A9790G" - ] - } - }, - "name": "KU059755.1", - "node_attrs": { - "author": { - "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.06344350430618907, - "Colombia": 0.6025475149891477, - "Guatemala": 0.22368546653429716, - "Peru": 0.07478221993941316 - }, - "entropy": 1.2083654795266825, - "value": "Colombia" - }, - "div": 0.23560886588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1969.8013698630136, - 1969.8013698630136 - ], - "value": 1969.8013698630136 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1969": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.2" - } - } - } - ], - "name": "NODE_0000057", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.06259645915077286, - "Colombia": 0.619837309069232, - "Guatemala": 0.22800942157406923, - "Peru": 0.07302738278086478 - }, - "entropy": 1.1027809759015437, - "value": "Colombia" - }, - "div": 0.23464809588190186, - "num_date": { - "confidence": [ - 1968.795796102068, - 1968.8205089467992 - ], - "value": 1968.8152233956255 - }, - "region": { - "confidence": { - "LA,C": 0.999999999871609 - }, - "entropy": 3.104310319109639e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.053221954724389536, - "1968": 0.302855988289281, - "1969": 0.6307929458404874, - "1973": 0.0026265551381196386 - }, - "entropy": 0.9096396363903535, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.2" - } - } - } - ], - "name": "NODE_0000056", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.06241938821581642, - "Colombia": 0.6234134613556224, - "Guatemala": 0.22890062456271243, - "Peru": 0.07265795701465684 - }, - "entropy": 1.078603347874914, - "value": "Colombia" - }, - "div": 0.23429868588190186, - "num_date": { - "confidence": [ - 1968.7255550227908, - 1968.8011913653334 - ], - "value": 1968.7690491172552 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993331373 - }, - "entropy": 1.5035230689832826e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.10496893142679974, - "1968": 0.2324756861812313, - "1969": 0.6373036545657722, - "1973": 0.005276524347427541 - }, - "entropy": 1.0401364584602424, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T533C", - "C5201T", - "C7154T", - "T8437C", - "T9796C", - "T11407C", - "C11408T", - "T11412C", - "C11413T", - "T11417C" - ] - }, - "labels": { - "GRI Lineage Root": "A.1.0.1" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: V134A" - }, - "mutations": { - "E2": [ - "V134A" - ], - "nuc": [ - "C29T", - "T3656C", - "T8964C" - ] - } - }, - "name": "KC344505.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.23508581588190183, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1969.9304517568803, - 1969.9986301369863 - ], - "value": 1969.9986301369863 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1969": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: A52V; E1: M433V; E2: T205K, K213R" - }, - "mutations": { - "6k": [ - "A52V" - ], - "E1": [ - "M433V" - ], - "E2": [ - "T205K", - "K213R" - ], - "nuc": [ - "C1394T", - "C2609T", - "T2849C", - "A3890G", - "T4373C", - "T6143C", - "T7448C", - "C7771T", - "T7849C", - "C9177A", - "A9201G", - "C9559T", - "G9568A", - "C9987T", - "T10354C", - "G10549A", - "G10714T", - "C11200T", - "A11297G" - ] - } - }, - "name": "AF069903.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W.", - "value": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W." - }, - "country": { - "confidence": { - "Australia": 0.008252776602165928, - "Colombia": 0.13091354915600342, - "Guatemala": 0.7615806932873231, - "Peru": 0.07455383475320453 - }, - "entropy": 0.8541083744754584, - "value": "Guatemala" - }, - "div": 0.23648515588190183, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1971.0013698630137, - 1971.1726010254117 - ], - "value": 1971.0013698630137 - }, - "region": { - "confidence": { - "LA,C": 0.9986575550464764 - }, - "entropy": 0.011028272506834717, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1971": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.1" - } - } - } - ], - "name": "NODE_0000059", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.006633347864087979, - "Colombia": 0.13273091905256906, - "Guatemala": 0.782619029636528, - "Peru": 0.07423820073989744 - }, - "entropy": 0.7146551377218511, - "value": "Guatemala" - }, - "div": 0.23482324588190184, - "num_date": { - "confidence": [ - 1969.87628163544, - 1969.9865857915995 - ], - "value": 1969.9473528687447 - }, - "region": { - "confidence": { - "LA,C": 0.9999999157604076 - }, - "entropy": 0.0000014999364436015117, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.011791117507159998, - "1968": 0.017304714568353575, - "1969": 0.9127404459296985, - "1971": 0.03759443729213288 - }, - "entropy": 0.47639178544380967, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: L415F; nsP2: T122I; nsP3: T13M, P342L, R365W, V493A", - "GRI Lineage Root": "A.1.0.0" - }, - "mutations": { - "E2": [ - "L415F" - ], - "nsP2": [ - "T122I" - ], - "nsP3": [ - "T13M", - "P342L", - "R365W", - "V493A" - ], - "nuc": [ - "T467C", - "C692T", - "T1194C", - "T1847C", - "C1956T", - "C2014T", - "G2306A", - "C2690T", - "C3527T", - "C4069T", - "T4373C", - "C5056T", - "A5124T", - "T5509C", - "A6515T", - "T6833C", - "G7349A", - "T8200C", - "T8320C", - "A8923C", - "C9806T", - "C11086T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: M10T; E1: S275L; E3: K52M; nsP2: V147A, N782S; nsP3: I270T, T333I, S407F, V499A, P513Q, D554E; nsP4: H11Q, E46A" - }, - "mutations": { - "CP": [ - "M10T" - ], - "E1": [ - "S275L" - ], - "E3": [ - "K52M" - ], - "nsP2": [ - "V147A", - "N782S" - ], - "nsP3": [ - "I270T", - "T333I", - "S407F", - "V499A", - "P513Q", - "D554E" - ], - "nsP4": [ - "H11Q", - "E46A" - ], - "nuc": [ - "T266C", - "T657C", - "C807T", - "T2089C", - "C2252T", - "C3086A", - "G3305A", - "A3994G", - "G4151A", - "G4679A", - "T4840C", - "G4952A", - "C5029T", - "C5251T", - "G5453A", - "T5527C", - "C5569A", - "T5657C", - "T5693G", - "T5735A", - "A5839C", - "C6732T", - "A6974G", - "A7253C", - "T7478C", - "T7590C", - "A8002G", - "T8536C", - "T8539A", - "A8541T", - "C8815A", - "C8836T", - "T8962A", - "C9850T", - "C10824T", - "C10984T" - ] - } - }, - "name": "KC344517.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Ecuador": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Ecuador" - }, - "div": 0.23904063588190186, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1977.0013698630137, - 1977.898904109589 - ], - "value": 1977.0013698630137 - }, - "place_of_collection": { - "value": "Ecuador" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1977": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A810C", - "C2850T", - "T6368C", - "A7559G", - "T8122C" - ] - }, - "labels": { - "GRI Lineage Root": "A.1.0.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: M433I; E2: S218N; nsP1: G463R" - }, - "mutations": { - "E1": [ - "M433I" - ], - "E2": [ - "S218N" - ], - "nsP1": [ - "G463R" - ], - "nuc": [ - "C1394T", - "G1431A", - "C1949T", - "A2066G", - "C8038T", - "T8695C", - "G9216A", - "C10468T", - "G11299A" - ] - } - }, - "name": "KU059756.1", - "node_attrs": { - "author": { - "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.23709752588190186, - "host": { - "value": "Equus africanus asinus" - }, - "num_date": { - "confidence": [ - 1973.0013698630137, - 1973.9986301369863 - ], - "value": 1973.2160288875702 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1973": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: T153I" - }, - "mutations": { - "nsP2": [ - "T153I" - ], - "nuc": [ - "C2107T" - ] - } - }, - "name": "KC344483.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23639824588190186, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 1973.0013698630137, - 1973.5524149701798 - ], - "value": 1973.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1973": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.0.0" - } - } - } - ], - "name": "NODE_0000061", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.999956339081101 - }, - "entropy": 0.0005326438483081602, - "value": "Peru" - }, - "div": 0.23631088588190186, - "num_date": { - "confidence": [ - 1972.808732989194, - 1973.5437480423384 - ], - "value": 1973.0002280240046 - }, - "region": { - "confidence": { - "LA,C": 0.999999999969157 - }, - "entropy": 7.873405922378091e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.9995735816074588 - }, - "entropy": 0.004983293337691475, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.0.0" - } - } - } - ], - "name": "NODE_0000060", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.018385962721530005, - "Ecuador": 0.027699046557080928, - "Guatemala": 0.022799146068101593, - "Peru": 0.9289926159277382 - }, - "entropy": 0.34498500206731214, - "value": "Peru" - }, - "div": 0.23587653588190186, - "num_date": { - "confidence": [ - 1972.736894295944, - 1973.4438810325018 - ], - "value": 1972.938242158648 - }, - "region": { - "confidence": { - "LA,C": 0.9999999916252283 - }, - "entropy": 1.677047333841891e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1969": 0.023603023707210513, - "1972": 0.00366608324078784, - "1973": 0.894083422778653, - "1977": 0.015074764356594248 - }, - "entropy": 0.6870579927800965, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.0" - } - } - } - ], - "name": "NODE_0000179", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.013318357033853607, - "Colombia": 0.26946755173877973, - "Guatemala": 0.5606051728866255, - "Peru": 0.15048094363715023 - }, - "entropy": 1.0625810031504848, - "value": "Guatemala" - }, - "div": 0.23394840588190186, - "num_date": { - "confidence": [ - 1969.6169799371332, - 1969.8506623410678 - ], - "value": 1969.7421920756765 - }, - "region": { - "confidence": { - "LA,C": 0.9999999956255116 - }, - "entropy": 9.043610755815108e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.028029927018023242, - "1968": 0.03407964825685136, - "1969": 0.8625483623451418, - "1971": 0.030860657628684018 - }, - "entropy": 0.7297689093847979, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0" - } - } - } - ], - "name": "NODE_0000176", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.062240501967109715, - "Colombia": 0.6270134565651324, - "Guatemala": 0.22979669772552752, - "Peru": 0.07228387109416334 - }, - "entropy": 1.052856642704099, - "value": "Colombia" - }, - "div": 0.23394840588190186, - "num_date": { - "confidence": [ - 1968.601604505248, - 1968.7540763168925 - ], - "value": 1968.695947820887 - }, - "region": { - "confidence": { - "LA,C": 0.9999999982893361 - }, - "entropy": 3.654716328431038e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.16102952807898727, - "1968": 0.16840038361635556, - "1969": 0.6431316878768701, - "1973": 0.005026901817827786 - }, - "entropy": 1.0675145638976107, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0" - } - } - } - ], - "name": "NODE_0000053", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.09577847619914223, - "Colombia": 0.8784369640811797, - "Guatemala": 0.006240745796238158, - "Peru": 0.016993333686260263 - }, - "entropy": 0.4558631564342198, - "value": "Colombia" - }, - "div": 0.23394840588190186, - "num_date": { - "confidence": [ - 1967.946777021534, - 1967.996841768476 - ], - "value": 1967.975668215525 - }, - "region": { - "confidence": { - "LA,C": 0.9999976095440851 - }, - "entropy": 0.000033333371819117014, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.9988559866840461 - }, - "entropy": 0.010510182900205233, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - } - ], - "name": "NODE_0000052", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.09252890696468112, - "Colombia": 0.8675255290656017, - "Peru": 0.019164711325233227, - "USA": 0.013626252627991458 - }, - "entropy": 0.5183073039160476, - "value": "Colombia" - }, - "div": 0.23368630588190187, - "num_date": { - "confidence": [ - 1967.8973173119757, - 1967.9783378400864 - ], - "value": 1967.9450389863414 - }, - "region": { - "confidence": { - "LA,C": 0.9999977049911877 - }, - "entropy": 0.000032364860153776476, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.8870853917732555, - "1968": 0.006136589899325028, - "1969": 0.004590787137761849, - "1970": 0.0036455569954927836 - }, - "entropy": 0.7831011500812837, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - } - ], - "name": "NODE_0000170", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.09168791615754958, - "Colombia": 0.8629861085882512, - "Peru": 0.022167046525810186, - "USA": 0.014850603673210066 - }, - "entropy": 0.5421944590720282, - "value": "Colombia" - }, - "div": 0.23359915588190186, - "num_date": { - "confidence": [ - 1967.8430057211283, - 1967.9682661901575 - ], - "value": 1967.915915475018 - }, - "region": { - "confidence": { - "LA,C": 0.9999979603862316 - }, - "entropy": 0.000029105603967051867, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.7880923522990744, - "1968": 0.010926526675493198, - "1969": 0.007865877268055535, - "1970": 0.006732572856882086 - }, - "entropy": 1.3257618506177011, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - } - ], - "name": "NODE_0000047", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.010030113636472042, - "Colombia": 0.32065260973867504, - "Panama": 0.005507449754000562, - "Peru": 0.641332275929857 - }, - "entropy": 0.8600332337801032, - "value": "Peru" - }, - "div": 0.23359915588190186, - "num_date": { - "confidence": [ - 1938.9682038594049, - 1938.997829139726 - ], - "value": 1938.9914211616438 - }, - "region": { - "confidence": { - "LA,C": 0.9999999765111535 - }, - "entropy": 4.458732295010507e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.0022218214640672535, - "1938": 0.9033672963085594, - "1942": 0.009821820486715462, - "1943": 0.010854527226071163 - }, - "entropy": 0.6710652343955629, - "value": "1938" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000043", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.009476829620298065, - "Colombia": 0.3176756183943257, - "Panama": 0.005301626435895918, - "Peru": 0.6463731107253612 - }, - "entropy": 0.8472660476764475, - "value": "Peru" - }, - "div": 0.23336247588190187, - "num_date": { - "confidence": [ - 1938.9169757758605, - 1938.9893942371561 - ], - "value": 1938.9584699990578 - }, - "region": { - "confidence": { - "LA,C": 0.9999995558202152 - }, - "entropy": 0.000007162110626274608, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.004119515514859055, - "1938": 0.8161662462958983, - "1942": 0.019530161646436048, - "1943": 0.021810702965676627 - }, - "entropy": 1.1458658514422, - "value": "1938" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000041", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.007196103055078609, - "Colombia": 0.30546179434023657, - "Panama": 0.004419400218734814, - "Peru": 0.6673175119038721 - }, - "entropy": 0.7912807801552402, - "value": "Peru" - }, - "div": 0.22937926588190188, - "num_date": { - "confidence": [ - 1937.9103666519259, - 1938.3405454186548 - ], - "value": 1938.1342723696498 - }, - "region": { - "confidence": { - "LA,C": 0.9999995104705728 - }, - "entropy": 0.000007813174926948253, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.01037938874400672, - "1938": 0.5347912869448256, - "1942": 0.0659034895027205, - "1943": 0.022860976985327755 - }, - "entropy": 2.4005997550682134, - "value": "1938" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: N102S; nsP2: R654Q; nsP3: T360N" - }, - "mutations": { - "CP": [ - "N102S" - ], - "nsP2": [ - "R654Q" - ], - "nsP3": [ - "T360N" - ], - "nuc": [ - "C353T", - "A1568C", - "A2213G", - "C2933T", - "C3056T", - "A3095G", - "C3552T", - "G3610A", - "C3752T", - "G4580A", - "A4754T", - "G4868A", - "C5110A", - "A5573C", - "G6107A", - "A6200G", - "A6656G", - "T6884A", - "T6932A", - "G7124T", - "C7373T", - "C7609T", - "A7866G", - "T8017C", - "A8146G", - "T8350A", - "C8752A", - "A9028G", - "A9535G", - "G9619A", - "C9958A", - "A10075G", - "A11251G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: T108P; E1: Y72N; E2: D117G, V179I, A192V, E201K, T213K; E3: Q18E; nsP1: V517F; nsP2: T647K, I677V, L752H; nsP3: A61V, A62T, P342S, T368M, P403S, E431D, L455R, P483H" - }, - "mutations": { - "CP": [ - "T108P" - ], - "E1": [ - "Y72N" - ], - "E2": [ - "D117G", - "V179I", - "A192V", - "E201K", - "T213K" - ], - "E3": [ - "Q18E" - ], - "nsP1": [ - "V517F" - ], - "nsP2": [ - "T647K", - "I677V", - "L752H" - ], - "nsP3": [ - "A61V", - "A62T", - "P342S", - "T368M", - "P403S", - "E431D", - "L455R", - "P483H" - ], - "nuc": [ - "G98A", - "T422A", - "C458T", - "G464A", - "T695C", - "T1116C", - "T1422C", - "A1442G", - "A1511G", - "G1541A", - "T1560C", - "C1568T", - "G1593T", - "T1922C", - "G2069A", - "C2085T", - "C2141T", - "A2165T", - "A2216G", - "C2498T", - "T2594C", - "A2633G", - "A2696G", - "C2930T", - "T2972C", - "T3158C", - "C3321T", - "T3341C", - "T3386C", - "A3416G", - "C3589A", - "T3593C", - "C3626T", - "C3677T", - "A3678G", - "T3689C", - "C3780T", - "A3839G", - "T3904A", - "T3920A", - "T4100C", - "C4213T", - "G4215A", - "C4226T", - "T4274G", - "C4535A", - "T4709A", - "A4778G", - "A4793G", - "C5055T", - "C5134T", - "C5238T", - "T5300C", - "G5324T", - "T5369C", - "T5395G", - "A5423C", - "T5450A", - "C5479A", - "A5828G", - "C5915T", - "C6077T", - "C6095T", - "T6113C", - "T6230C", - "C6635T", - "G6650A", - "A6683G", - "T6800A", - "T6878C", - "T7184C", - "C7214T", - "T7304C", - "C7747T", - "G7759T", - "T7834C", - "A7883C", - "C8243A", - "C8401T", - "C8438G", - "C8476T", - "C8758T", - "C8770T", - "G8797A", - "A8913G", - "C8989A", - "T9031C", - "G9098A", - "C9138T", - "T9139C", - "C9152T", - "G9164A", - "G9190A", - "C9201A", - "A9268G", - "A9337G", - "C9562T", - "T9802C", - "T10214A", - "C10300T", - "C10303T", - "T10321C", - "C10354T", - "A10414G", - "T10481C", - "C10523A", - "C10525A", - "C10846T", - "T10861C", - "C11366T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E199K" - }, - "mutations": { - "E2": [ - "E199K" - ], - "nuc": [ - "T3620C", - "G9158A" - ] - } - }, - "name": "KC344528.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.06438504290337106, - "Colombia": 0.21592005839636536, - "Panama": 0.06889288247347981, - "Peru": 0.08882120556687098 - }, - "entropy": 2.5231448936784155, - "value": "Colombia" - }, - "div": 0.23045123588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1962.0013698630137, - 1962.9986301369863 - ], - "value": 1962.0553697251692 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1962": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T6182G" - ] - } - }, - "name": "U55342.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Australia": 0.06438504290337106, - "Colombia": 0.21592005839636536, - "Panama": 0.06889288247347981, - "Peru": 0.08882120556687098 - }, - "entropy": 2.5231448936784155, - "value": "Colombia" - }, - "div": 0.23036346588190185, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1962.0013698630137, - 1962.9986301369863 - ], - "value": 1962.0271777287878 - }, - "region": { - "confidence": { - "LA,C": 0.9997445533439815 - }, - "entropy": 0.002522420070132884, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1962": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S480P; nsP4: A537V" - }, - "mutations": { - "nsP3": [ - "S480P" - ], - "nsP4": [ - "A537V" - ], - "nuc": [ - "A476G", - "C3941T", - "A5453G", - "T5469C", - "C7312T", - "C9622T", - "A10306G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "G4049A" - ] - } - }, - "name": "U55345.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Colombia": 0.20330619903057676, - "Panama": 0.06938840598922676, - "Peru": 0.08852032082516399, - "USA": 0.06515642409636267 - }, - "entropy": 2.5396663495109006, - "value": "Colombia" - }, - "div": 0.23104102588190184, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1964.4717575077311, - 1964.9986338797814 - ], - "value": 1964.9986338797814 - }, - "region": { - "confidence": { - "LA,C": 0.9996931423590903 - }, - "entropy": 0.0029702075097522156, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1964": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1964" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: A440V" - }, - "mutations": { - "nsP3": [ - "A440V" - ], - "nuc": [ - "T13A", - "T3941C", - "C5350T", - "T7229C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E224V" - }, - "mutations": { - "E2": [ - "E224V" - ], - "nuc": [ - "A9234T" - ] - } - }, - "name": "KC344512.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.17146171855808612, - "Panama": 0.07037374488067048, - "Peru": 0.08708611005079833, - "USA": 0.06708117824867905 - }, - "entropy": 2.5769794588562505, - "value": "Colombia" - }, - "div": 0.23114996588190184, - "host": { - "value": "mosquito" - }, - "num_date": { - "confidence": [ - 1973.1133796621118, - 1973.9986301369863 - ], - "value": 1973.9986301369863 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1973": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E199K; nsP2: E340V, T433I; nsP3: V61A, T62A, E438G; nsP4: Y321D" - }, - "mutations": { - "E2": [ - "E199K" - ], - "nsP2": [ - "E340V", - "T433I" - ], - "nsP3": [ - "V61A", - "T62A", - "E438G" - ], - "nsP4": [ - "Y321D" - ], - "nuc": [ - "A422T", - "A1571T", - "T2051C", - "T2579C", - "A2668T", - "C2947T", - "C4100T", - "G4187A", - "T4213C", - "A4215G", - "T4226C", - "G4241A", - "C4244A", - "A5344G", - "T6663G", - "G9158A" - ] - } - }, - "name": "L04653.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W.", - "value": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W." - }, - "country": { - "confidence": { - "Colombia": 0.1266946373452216, - "Mexico": 0.07203451073117577, - "Panama": 0.07078962331166565, - "Peru": 0.08273811515028673 - }, - "entropy": 2.6170248815403863, - "value": "Colombia" - }, - "div": 0.23246281588190185, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1993.5246575342467, - 1993.5246575342467 - ], - "value": 1993.5246575342467 - }, - "region": { - "confidence": { - "LA,C": 0.9995551003024005 - }, - "entropy": 0.004140214557693566, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1993": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1993" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C3407T" - ] - }, - "labels": { - "GRI Lineage Root": "A.2" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T3407C" - ] - } - }, - "name": "AF375051.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Medina,G., Wang,E., Kang,W., Salas,R.A., De Siger,J. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Medina,G., Wang,E., Kang,W., Salas,R.A., De Siger,J. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.11531482939429842, - "Mexico": 0.07338909742589424, - "Panama": 0.0705959749579169, - "Peru": 0.0809568688094394 - }, - "entropy": 2.624410994469242, - "value": "Colombia" - }, - "div": 0.23106513588190186, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2001.327397260274, - 2001.327397260274 - ], - "value": 2001.327397260274 - }, - "region": { - "confidence": { - "?": 0.002207463537506007, - "AUSNZ": 0.0053796003024328245, - "LA,C": 0.9924129361600613 - }, - "entropy": 0.049168031032224814, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2001": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2" - }, - "GRI Lineage Level 3": { - "value": "A.2" - }, - "GRI Lineage Level 4": { - "value": "A.2" - }, - "GRI Lineage Level 5": { - "value": "A.2" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "G1442A", - "C4974T", - "T5291C", - "T6497A" - ] - }, - "labels": { - "GRI Lineage Root": "A.2.1" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T740C", - "C2717T", - "T5153C" - ] - } - }, - "name": "KF985959.1", - "node_attrs": { - "author": { - "author": "Das,S., Halpin,R.A., Ransier,A., Mohan,M., Fedorova,N., Tsitrin,T., Puri,V., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Schobel,S., Shrivastava,S., Wang,S., Auguste,A.J., Wentworth,D.E. and Weaver,S.", - "value": "Das,S., Halpin,R.A., Ransier,A., Mohan,M., Fedorova,N., Tsitrin,T., Puri,V., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Schobel,S., Shrivastava,S., Wang,S., Auguste,A.J., Wentworth,D.E. and Weaver,S." - }, - "country": { - "confidence": { - "Colombia": 0.12265872595066107, - "Mexico": 0.07250912078267568, - "Panama": 0.07074039419618926, - "Peru": 0.0821486186033733 - }, - "entropy": 2.6197916601215065, - "value": "Colombia" - }, - "div": 0.23176091588190184, - "host": { - "value": "Anopheles" - }, - "num_date": { - "confidence": [ - 1995.6102402055762, - 1995.818978074584 - ], - "value": 1995.7340087427822 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.1" - }, - "GRI Lineage Level 3": { - "value": "A.2.1" - }, - "GRI Lineage Level 4": { - "value": "A.2.1" - }, - "GRI Lineage Level 5": { - "value": "A.2.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "U55350.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Colombia": 0.12265872595066107, - "Mexico": 0.07250912078267568, - "Panama": 0.07074039419618926, - "Peru": 0.0821486186033733 - }, - "entropy": 2.6197916601215065, - "value": "Colombia" - }, - "div": 0.23150100588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1995.7082191780821, - 1995.7082191780821 - ], - "value": 1995.7082191780821 - }, - "region": { - "confidence": { - "LA,C": 0.9997448380641051 - }, - "entropy": 0.0025199335995723174, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.1" - }, - "GRI Lineage Level 3": { - "value": "A.2.1" - }, - "GRI Lineage Level 4": { - "value": "A.2.1" - }, - "GRI Lineage Level 5": { - "value": "A.2.1" - } - } - } - ], - "name": "NODE_0000002", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.12296343673257827, - "Mexico": 0.0724730777351666, - "Panama": 0.0707448056963123, - "Peru": 0.08219464782059407 - }, - "entropy": 2.619588280311464, - "value": "Colombia" - }, - "div": 0.23149865588190185, - "num_date": { - "confidence": [ - 1995.574859441062, - 1995.7082191780821 - ], - "value": 1995.7054004027837 - }, - "region": { - "confidence": { - "LA,C": 0.9999998609794091 - }, - "entropy": 0.000002405770592088518, - "value": "LA,C" - }, - "year": { - "confidence": { - "1995": 0.9999968422932926 - }, - "entropy": 0.00005275263066619717, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.1" - }, - "GRI Lineage Level 3": { - "value": "A.2.1" - }, - "GRI Lineage Level 4": { - "value": "A.2.1" - }, - "GRI Lineage Level 5": { - "value": "A.2.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T5474C" - ] - }, - "labels": { - "GRI Lineage Root": "A.2.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E3K; nsP1: D446E; nsP2: K11R" - }, - "mutations": { - "E2": [ - "E3K" - ], - "nsP1": [ - "D446E" - ], - "nsP2": [ - "K11R" - ], - "nuc": [ - "T1382A", - "A1681G", - "C1922T", - "C2624T", - "A7993C", - "G8524A", - "G8570A" - ] - } - }, - "name": "KP282671.1", - "node_attrs": { - "author": { - "author": "Yu,G.Y., Wiley,M.R., Kugelman,J.R., Ladner,J.T., Beitzel,B.F., Eccleston,L.T., Morazzani,E.M., Glass,P.J. and Palacios,G.F.", - "value": "Yu,G.Y., Wiley,M.R., Kugelman,J.R., Ladner,J.T., Beitzel,B.F., Eccleston,L.T., Morazzani,E.M., Glass,P.J. and Palacios,G.F." - }, - "country": { - "confidence": { - "Colombia": 0.12287250546900981, - "Mexico": 0.07248382994904347, - "Panama": 0.07074350150214236, - "Peru": 0.08218093865577455 - }, - "entropy": 2.6196490679107574, - "value": "Colombia" - }, - "div": 0.23185021588190183, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1995.4343005653088, - 1995.5962138631605 - ], - "value": 1995.4986603546852 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T1247C", - "C10912T" - ] - } - }, - "name": "U55347.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Colombia": 0.12287250546900981, - "Mexico": 0.07248382994904347, - "Panama": 0.07074350150214236, - "Peru": 0.08218093865577455 - }, - "entropy": 2.6196490679107574, - "value": "Colombia" - }, - "div": 0.23141200588190183, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1995.3931506849315, - 1995.3931506849315 - ], - "value": 1995.3931506849315 - }, - "region": { - "confidence": { - "LA,C": 0.999744976332498 - }, - "entropy": 0.002518715966905105, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C11236T" - ] - }, - "labels": { - "GRI Lineage Root": "A.2.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "AY986475.1", - "node_attrs": { - "author": { - "author": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C.", - "value": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.11614394199789052, - "Mexico": 0.07328860429636362, - "Panama": 0.07061619009876358, - "Peru": 0.08109980363328025 - }, - "entropy": 2.623917255258199, - "value": "Colombia" - }, - "div": 0.23132649588190182, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2000.1379781420765, - 2000.1379781420765 - ], - "value": 2000.1379781420765 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: E199K; nsP4: V208I" - }, - "mutations": { - "E2": [ - "E199K" - ], - "nsP4": [ - "V208I" - ], - "nuc": [ - "G6324A", - "C6347T", - "G9158A" - ] - } - }, - "name": "AY973944.1", - "node_attrs": { - "author": { - "author": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C.", - "value": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.11559490793384783, - "Mexico": 0.07335511582769708, - "Panama": 0.07060292305504967, - "Peru": 0.08100540670657486 - }, - "entropy": 2.624245016861772, - "value": "Colombia" - }, - "div": 0.23158746588190185, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2000.7581967213114, - 2000.7581967213114 - ], - "value": 2000.7581967213114 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0.0" - } - } - } - ], - "name": "NODE_0000005", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.11640696525342763, - "Mexico": 0.07325678840101718, - "Panama": 0.07062238200728022, - "Peru": 0.08114467691136013 - }, - "entropy": 2.6237591151676245, - "value": "Colombia" - }, - "div": 0.23132446588190184, - "num_date": { - "confidence": [ - 2000.0926052116986, - 2000.1379781420765 - ], - "value": 2000.1365687544271 - }, - "region": { - "confidence": { - "LA,C": 0.9999999980945032 - }, - "entropy": 4.097585290972596e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "2000": 0.9988406949617477 - }, - "entropy": 0.013158656553479768, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0.0" - } - } - } - ], - "name": "NODE_0000003", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.12317858657218209, - "Mexico": 0.07244764968521836, - "Panama": 0.07074785011054185, - "Peru": 0.082226994276173 - }, - "entropy": 2.6194441300420284, - "value": "Colombia" - }, - "div": 0.23123688588190183, - "num_date": { - "confidence": [ - 1995.3603892794445, - 1995.3906481148497 - ], - "value": 1995.3829258021235 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993277366 - }, - "entropy": 1.5150220194035638e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1995": 0.9999962947312522 - }, - "entropy": 0.000059820917011185424, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0" - } - } - } - ], - "name": "NODE_0000001", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.12348662989367325, - "Mexico": 0.07241127311717103, - "Panama": 0.07075210821043966, - "Peru": 0.08227308649522318 - }, - "entropy": 2.6192369534666704, - "value": "Colombia" - }, - "div": 0.23114959588190184, - "num_date": { - "confidence": [ - 1995.3284639770382, - 1995.3863453524257 - ], - "value": 1995.3649505229525 - }, - "region": { - "confidence": { - "LA,C": 0.9999999923866701 - }, - "entropy": 1.5319433947009677e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1995": 0.9992381740690662 - }, - "entropy": 0.008170933844910947, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2" - }, - "GRI Lineage Level 3": { - "value": "A.2" - }, - "GRI Lineage Level 4": { - "value": "A.2" - }, - "GRI Lineage Level 5": { - "value": "A.2" - } - } - } - ], - "name": "NODE_0000188", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.12379664830363835, - "Mexico": 0.07237469917160788, - "Panama": 0.07075627467566835, - "Peru": 0.0823192141248006 - }, - "entropy": 2.619027514419648, - "value": "Colombia" - }, - "div": 0.23106278588190185, - "num_date": { - "confidence": [ - 1995.2727095611767, - 1995.3756044161637 - ], - "value": 1995.3348427689084 - }, - "region": { - "confidence": { - "LA,C": 0.9999914017216923 - }, - "entropy": 0.00011336806299264713, - "value": "LA,C" - }, - "year": { - "confidence": { - "1993": 0.050640290024690934, - "1994": 0.0024491247399267323, - "1995": 0.8767526862482512, - "2001": 0.006213807480525592 - }, - "entropy": 0.7295429316952857, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2" - }, - "GRI Lineage Level 3": { - "value": "A.2" - }, - "GRI Lineage Level 4": { - "value": "A.2" - }, - "GRI Lineage Level 5": { - "value": "A.2" - } - } - } - ], - "name": "NODE_0000187", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.12715697948807286, - "Mexico": 0.07198051394771933, - "Panama": 0.07079403682264487, - "Peru": 0.0828029475070354 - }, - "entropy": 2.6166979725197455, - "value": "Colombia" - }, - "div": 0.23106278588190185, - "num_date": { - "confidence": [ - 1993.1133833316294, - 1993.3478944757649 - ], - "value": 1993.2453178186013 - }, - "region": { - "confidence": { - "LA,C": 0.9999111791202403 - }, - "entropy": 0.0009637014619203179, - "value": "LA,C" - }, - "year": { - "confidence": { - "1971": 0.0031042619029614574, - "1993": 0.8356465284571368, - "1995": 0.06928011788560079, - "2001": 0.0034201208120829578 - }, - "entropy": 0.9213350225157502, - "value": "1993" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000007", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.17217236900816232, - "Panama": 0.07035666250523602, - "Peru": 0.08713031906154636, - "USA": 0.06704055803747425 - }, - "entropy": 2.576220133608144, - "value": "Colombia" - }, - "div": 0.23106278588190185, - "num_date": { - "confidence": [ - 1973.0565831381487, - 1973.986522682982 - ], - "value": 1973.7695868423114 - }, - "region": { - "confidence": { - "LA,C": 0.9999998118442198 - }, - "entropy": 0.000003183034431762362, - "value": "LA,C" - }, - "year": { - "confidence": { - "1964": 0.004649496326322948, - "1969": 0.004838900579318875, - "1972": 0.0060430768617264815, - "1973": 0.8790557051761969 - }, - "entropy": 0.8301561185956534, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000008", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.20413427613140944, - "Panama": 0.0693574949590583, - "Peru": 0.08854425232777204, - "USA": 0.06510386969218443 - }, - "entropy": 2.5386106666604644, - "value": "Colombia" - }, - "div": 0.23086614588190185, - "num_date": { - "confidence": [ - 1964.4607319124136, - 1964.9978327426097 - ], - "value": 1964.9125998682318 - }, - "region": { - "confidence": { - "LA,C": 0.99994813539899 - }, - "entropy": 0.000590532480416308, - "value": "LA,C" - }, - "year": { - "confidence": { - "1962": 0.03286140981597313, - "1963": 0.0027299199539784946, - "1964": 0.8871647399557121, - "1973": 0.0031602718472729615 - }, - "entropy": 0.7255223603892622, - "value": "1964" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000010", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.06432972849880557, - "Colombia": 0.2168307451519846, - "Panama": 0.06885514748173119, - "Peru": 0.08883784435605224 - }, - "entropy": 2.5219161812658024, - "value": "Colombia" - }, - "div": 0.23027590588190186, - "num_date": { - "confidence": [ - 1961.961715317006, - 1962.8288129643115 - ], - "value": 1961.9990761142328 - }, - "region": { - "confidence": { - "LA,C": 0.9999995760919773 - }, - "entropy": 0.000006829033705509929, - "value": "LA,C" - }, - "year": { - "confidence": { - "1962": 0.9996435974993584 - }, - "entropy": 0.004279100377774365, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: T277S", - "GRI Lineage Root": "A.6" - }, - "mutations": { - "E2": [ - "T277S" - ], - "nuc": [ - "T1116C", - "T1514C", - "A2255G", - "A2633G", - "C3677T", - "A4778G", - "A5033G", - "C5606T", - "C6077T", - "T6230C", - "C6383T", - "T6422C", - "A6683G", - "C7118T", - "T7184C", - "C7771A", - "C8476T", - "A9392T", - "A9619G", - "T9871C", - "T9892C", - "T10321C", - "G10393A", - "T10423C", - "C10849T", - "T10861C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: V172A; nsP2: P334L" - }, - "mutations": { - "nsP1": [ - "V172A" - ], - "nsP2": [ - "P334L" - ], - "nuc": [ - "C192T", - "T559C", - "T578C", - "A707G", - "C1031T", - "C1418T", - "T1547C", - "A1937G", - "T2414C", - "C2650T", - "G2651A", - "A2810G", - "C3179T", - "T3770C", - "A3902G", - "C3971T", - "C4019T", - "C4334T", - "C4382T", - "T4727C", - "G5405A", - "G6287A", - "C6380T", - "T6861C", - "A6863G", - "A6992T", - "C7100T", - "T7478C", - "A7646C", - "T7867C", - "T8056C", - "A8215G", - "C8243A", - "G8269A", - "G8287A", - "C8836T", - "T9031C", - "A9079G", - "A9583T", - "C9899T", - "C10150T", - "T10204C", - "T10222C", - "T10441C", - "T10600C", - "T10856C", - "C10903T", - "C10912T", - "T11194C" - ] - } - }, - "name": "KC344519.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.22784314588190188, - "host": { - "value": "Mansonia sp." - }, - "num_date": { - "confidence": [ - 1971.3301369863013, - 1971.4041095890411 - ], - "value": 1971.3301369863013 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1971": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.6" - }, - "GRI Lineage Level 2": { - "value": "A.6" - }, - "GRI Lineage Level 3": { - "value": "A.6" - }, - "GRI Lineage Level 4": { - "value": "A.6" - }, - "GRI Lineage Level 5": { - "value": "A.6" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: G78S, T108P, I136V; E1: T347S; nsP1: H475Q; nsP2: T579A; nsP3: P343Q, P353S, S520T; nsP4: S590C" - }, - "mutations": { - "CP": [ - "G78S", - "T108P", - "I136V" - ], - "E1": [ - "T347S" - ], - "nsP1": [ - "H475Q" - ], - "nsP2": [ - "T579A" - ], - "nsP3": [ - "P343Q", - "P353S", - "S520T" - ], - "nsP4": [ - "S590C" - ], - "nuc": [ - "T755C", - "A1163G", - "T1175C", - "T1190C", - "A1442C", - "C1469A", - "A1508G", - "C1622T", - "C1712T", - "C1761T", - "T2579C", - "T2714C", - "C2849T", - "A3384G", - "T3443C", - "T3476C", - "C3527T", - "T3752C", - "C3780T", - "C4016T", - "T4436C", - "T4772C", - "A4919G", - "T4943C", - "C5059A", - "C5088T", - "C5184T", - "C5228T", - "T5589A", - "G5591T", - "C6290T", - "T6392C", - "T6605C", - "G6656T", - "T6767C", - "C6870T", - "T7079C", - "A7253G", - "A7268T", - "A7470T", - "G7570A", - "G7780A", - "A7786G", - "G7793A", - "A7883C", - "A7967G", - "G7987A", - "C8032T", - "G8131A", - "T8278C", - "A8461G", - "C9196T", - "C9352T", - "G9367T", - "A9460G", - "C9643T", - "C10501T", - "A10726G", - "A11039T", - "T11080C", - "C11155T" - ] - } - }, - "name": "KC344477.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.2289276058819019, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1974.0013698630137, - 1974.7830238486633 - ], - "value": 1974.0013698630137 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1974": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1974" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.6" - }, - "GRI Lineage Level 2": { - "value": "A.6" - }, - "GRI Lineage Level 3": { - "value": "A.6" - }, - "GRI Lineage Level 4": { - "value": "A.6" - }, - "GRI Lineage Level 5": { - "value": "A.6" - } - } - } - ], - "name": "NODE_0000013", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9998257883177334 - }, - "entropy": 0.002039195193984026, - "value": "Colombia" - }, - "div": 0.2235226258819019, - "num_date": { - "confidence": [ - 1969.8517118172313, - 1970.427905456686 - ], - "value": 1970.175272101777 - }, - "region": { - "confidence": { - "LA,C": 0.9999990914520043 - }, - "entropy": 0.000013943958241706062, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.013398397232050366, - "1970": 0.012128430376462543, - "1971": 0.5162349230045983, - "1974": 0.0942107479714182 - }, - "entropy": 2.4183798112242947, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.6" - }, - "GRI Lineage Level 2": { - "value": "A.6" - }, - "GRI Lineage Level 3": { - "value": "A.6" - }, - "GRI Lineage Level 4": { - "value": "A.6" - }, - "GRI Lineage Level 5": { - "value": "A.6" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A2436C", - "G10348T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "A.5" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P61L, P66Q; E2: D117G, A192V, T213K; nsP3: P321S, M452K" - }, - "mutations": { - "CP": [ - "P61L", - "P66Q" - ], - "E2": [ - "D117G", - "A192V", - "T213K" - ], - "nsP3": [ - "P321S", - "M452K" - ], - "nuc": [ - "T242C", - "T378C", - "C692T", - "C920T", - "C986T", - "T1116C", - "C1688T", - "C2498T", - "A3269G", - "C3524T", - "C3677T", - "A3794G", - "T4373C", - "C4751A", - "A4919T", - "C4992T", - "T5006C", - "T5231C", - "T5386A", - "G6131A", - "T6410C", - "A6479G", - "G6572A", - "A6593G", - "A6683G", - "G7594A", - "C7743T", - "C7758A", - "C8236T", - "C8239T", - "C8326T", - "C8377T", - "A8913G", - "A8971G", - "C9138T", - "C9201A", - "C9394T", - "T9463C", - "G9514A", - "G9535A", - "T10130C", - "T10321C", - "T11228C", - "T11260C" - ] - } - }, - "name": "KC344484.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.22658310588190186, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 1961.0013698630137, - 1961.898904109589 - ], - "value": 1961.0013698630137 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1961": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.5" - }, - "GRI Lineage Level 2": { - "value": "A.5" - }, - "GRI Lineage Level 3": { - "value": "A.5" - }, - "GRI Lineage Level 4": { - "value": "A.5" - }, - "GRI Lineage Level 5": { - "value": "A.5" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A5063T" - ] - }, - "labels": { - "GRI Lineage Root": "A.5.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: N445S" - }, - "mutations": { - "nsP3": [ - "N445S" - ], - "nuc": [ - "T1116C", - "C1700A", - "T2015C", - "C2558T", - "C3105T", - "T3410C", - "C3485A", - "A3929G", - "T4097C", - "A4910G", - "C5204T", - "A5365G", - "A5378C", - "A5522G", - "C5585T", - "C5666T", - "A6683G", - "A6863G", - "T7184C", - "T7226C", - "A7322G", - "C8032T", - "C9487T", - "C9523T", - "G9538T", - "T10321C", - "C10762T" - ] - } - }, - "name": "MK028850.1", - "node_attrs": { - "author": { - "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", - "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." - }, - "country": { - "confidence": { - "Colombia": 0.09863119820994265, - "Honduras": 0.07200107896408517, - "Mexico": 0.07553422095775451, - "Peru": 0.07717185649239006 - }, - "entropy": 2.6327413979711545, - "value": "Colombia" - }, - "div": 0.22518543588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2018.521917808219, - 2018.521917808219 - ], - "value": 2018.521917808219 - }, - "region": { - "confidence": { - "?": 0.03763842633530198, - "AUSNZ": 0.08588345896946344, - "LA,C": 0.8764781146952347 - }, - "entropy": 0.44982547412244445, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2018": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2018" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.5" - }, - "GRI Lineage Level 2": { - "value": "A.5.0" - }, - "GRI Lineage Level 3": { - "value": "A.5.0" - }, - "GRI Lineage Level 4": { - "value": "A.5.0" - }, - "GRI Lineage Level 5": { - "value": "A.5.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: V419L; nsP2: R59C; nsP3: V331A, S348T, T352I; nsP4: E242D" - }, - "mutations": { - "E1": [ - "V419L" - ], - "nsP2": [ - "R59C" - ], - "nsP3": [ - "V331A", - "S348T", - "T352I" - ], - "nsP4": [ - "E242D" - ], - "nuc": [ - "T179C", - "T533C", - "T905C", - "C1160T", - "C1824T", - "A2081G", - "T2402A", - "T2423C", - "C2624T", - "C2759T", - "T2846C", - "C3026T", - "C3053T", - "A3173G", - "C3179T", - "T3284C", - "A3545G", - "C3780T", - "T3935C", - "T4097C", - "C4397T", - "C4535T", - "A4688G", - "T5023C", - "C5069T", - "T5073A", - "C5086T", - "C5339T", - "C5844T", - "A6047C", - "A6312C", - "A6428T", - "C6732T", - "A7756G", - "C8032T", - "T8140C", - "A8752G", - "C8776T", - "A9337G", - "T9823C", - "G9835A", - "C10177A", - "C10795T", - "T10840C", - "T11008C", - "C11086T", - "T11194C", - "C11236A", - "G11255T" - ] - } - }, - "name": "KC344524.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Colombia" - }, - "div": 0.22779483588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1905.390410958904, - 1905.390410958904 - ], - "value": 1905.390410958904 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1905": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.5" - }, - "GRI Lineage Level 2": { - "value": "A.5.0" - }, - "GRI Lineage Level 3": { - "value": "A.5.0" - }, - "GRI Lineage Level 4": { - "value": "A.5.0" - }, - "GRI Lineage Level 5": { - "value": "A.5.0" - } - } - } - ], - "name": "NODE_0000016", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9981221228880779, - "Peru": 0.001521865705903583 - }, - "entropy": 0.01485898398332722, - "value": "Colombia" - }, - "div": 0.22330937588190186, - "num_date": { - "confidence": [ - 1905.2530009306145, - 1905.3241345092297 - ], - "value": 1905.2843449059594 - }, - "region": { - "confidence": { - "LA,C": 0.9999999120462152 - }, - "entropy": 0.0000015618084538809578, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.8959037225881823, - "1961": 0.0033845308975933254, - "2003": 0.0029333206183661024, - "2018": 0.003329366900916031 - }, - "entropy": 0.7338151035117716, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.5" - }, - "GRI Lineage Level 2": { - "value": "A.5.0" - }, - "GRI Lineage Level 3": { - "value": "A.5.0" - }, - "GRI Lineage Level 4": { - "value": "A.5.0" - }, - "GRI Lineage Level 5": { - "value": "A.5.0" - } - } - } - ], - "name": "NODE_0000015", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.996256858704393, - "Peru": 0.0030421868829839686 - }, - "entropy": 0.02698040595594065, - "value": "Colombia" - }, - "div": 0.22296257588190185, - "num_date": { - "confidence": [ - 1905.2428524978138, - 1905.316862113497 - ], - "value": 1905.2698305696308 - }, - "region": { - "confidence": { - "LA,C": 0.999999984123635 - }, - "entropy": 3.077417909435107e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.8028850832362125, - "1961": 0.006272510380454364, - "2003": 0.005481890642865198, - "2018": 0.0062022030550575495 - }, - "entropy": 1.2536652293461779, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.5" - }, - "GRI Lineage Level 2": { - "value": "A.5" - }, - "GRI Lineage Level 3": { - "value": "A.5" - }, - "GRI Lineage Level 4": { - "value": "A.5" - }, - "GRI Lineage Level 5": { - "value": "A.5" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: T375M; nsP3: T15I, T339I, P342L, V359A" - }, - "mutations": { - "E1": [ - "T375M" - ], - "nsP3": [ - "T15I", - "T339I", - "P342L", - "V359A" - ], - "nuc": [ - "T1116C", - "C1622T", - "C1955T", - "C2036T", - "C2436A", - "A3269G", - "C3413T", - "C3596T", - "C3677T", - "C4075T", - "A5039G", - "C5047T", - "C5056T", - "T5107C", - "A5507G", - "C5606T", - "C6077T", - "A6683G", - "C7025T", - "T7184C", - "T8140C", - "C8896T", - "C9718T", - "C10180T", - "A10246G", - "T10321C", - "T10576C", - "T10861C", - "C11124T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: V47I", - "GRI Lineage Root": "A.4" - }, - "mutations": { - "E1": [ - "V47I" - ], - "nuc": [ - "G10139A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: A11V, E292D, A352V; E3: M6L, K52R; nsP1: K3R; nsP2: K225R, Q654K; nsP3: T13M, I15T, P353S, L358P; nsP4: H550Y" - }, - "mutations": { - "E1": [ - "A11V", - "E292D", - "A352V" - ], - "E3": [ - "M6L", - "K52R" - ], - "nsP1": [ - "K3R" - ], - "nsP2": [ - "K225R", - "Q654K" - ], - "nsP3": [ - "T13M", - "I15T", - "P353S", - "L358P" - ], - "nsP4": [ - "H550Y" - ], - "nuc": [ - "A26C", - "A52G", - "C192T", - "T302C", - "C458T", - "C566T", - "C635T", - "C671T", - "T710C", - "G716A", - "C762T", - "C1169T", - "C1322T", - "A1736G", - "C1748T", - "T1829C", - "C1916T", - "T2123C", - "T2237C", - "A2323G", - "C2519T", - "C2726T", - "A2771G", - "T2846C", - "T2873C", - "C3053T", - "A3194G", - "T3267C", - "A3354C", - "A3503G", - "C3512T", - "C3609A", - "T3689C", - "G3893T", - "C3962T", - "C4069T", - "T4075C", - "T4097C", - "G4178A", - "T4223C", - "C4361T", - "C4376T", - "G4379T", - "A4604C", - "C4658T", - "T4664C", - "G4796A", - "A4883G", - "A5063G", - "C5088T", - "T5104C", - "T5231C", - "T5276C", - "C5339T", - "T5369A", - "A5669G", - "T5766C", - "G5780T", - "G5903A", - "G5957A", - "T6122A", - "C6212T", - "T6233C", - "A6266G", - "C6290T", - "T6356C", - "G6524A", - "G6617A", - "T6641C", - "A6863G", - "C7350T", - "A7481G", - "A7484G", - "C7654T", - "C7726T", - "G7738A", - "A7763C", - "G7780A", - "C7816T", - "G7846A", - "C8038T", - "C8161T", - "T8257C", - "A8402C", - "C8407T", - "A8541G", - "T8722C", - "G8779A", - "G9238A", - "C9340T", - "G9676A", - "T9730C", - "C9817T", - "A9877G", - "T9907C", - "C10032T", - "C10120T", - "A10183G", - "G10246T", - "T10273C", - "A10627G", - "T10816C", - "A10876C", - "C11036T", - "C11055T", - "C11173A" - ] - } - }, - "name": "KC344522.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23371014588190187, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.8989071038252 - ], - "value": 2000.0013661202186 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.4" - }, - "GRI Lineage Level 2": { - "value": "A.4" - }, - "GRI Lineage Level 3": { - "value": "A.4" - }, - "GRI Lineage Level 4": { - "value": "A.4" - }, - "GRI Lineage Level 5": { - "value": "A.4" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: T194A, E313K; nsP2: V582A", - "GRI Lineage Root": "A.4.0" - }, - "mutations": { - "E2": [ - "T194A", - "E313K" - ], - "nsP2": [ - "V582A" - ], - "nuc": [ - "T1190C", - "A2162C", - "C2507T", - "C2759T", - "T2978G", - "T3394C", - "C3444T", - "C4154T", - "C4619T", - "C5513T", - "G6854A", - "A6968G", - "C7196T", - "T8737A", - "T8857C", - "C8980T", - "A9143G", - "G9211A", - "G9500A", - "G9586A", - "C10366T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: N291D; E3: A28V; nsP2: I375V, Y503H, A661T; nsP3: P389S, A516T; nsP4: S596G" - }, - "mutations": { - "E2": [ - "N291D" - ], - "E3": [ - "A28V" - ], - "nsP2": [ - "I375V", - "Y503H", - "A661T" - ], - "nsP3": [ - "P389S", - "A516T" - ], - "nsP4": [ - "S596G" - ], - "nuc": [ - "C192T", - "G1109A", - "T1592C", - "A2772G", - "C2864T", - "T3156C", - "C3417T", - "C3623T", - "G3630A", - "C4088T", - "A4874G", - "G4991A", - "C5000T", - "C5196T", - "G5408A", - "G5577A", - "T5736C", - "A7488G", - "C7795T", - "C8038T", - "C8161T", - "C8469T", - "C8608T", - "C9355T", - "A9434G", - "C9481T", - "T9529C", - "T9674C", - "T9757C", - "C10189T", - "A10621G", - "A10627G", - "A10873G", - "C11095T" - ] - } - }, - "name": "KC344525.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.22955274588190186, - "host": { - "value": "mosquito" - }, - "num_date": { - "confidence": [ - 1975.0013698630137, - 1975.898904109589 - ], - "value": 1975.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1975": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1975" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.4" - }, - "GRI Lineage Level 2": { - "value": "A.4.0" - }, - "GRI Lineage Level 3": { - "value": "A.4.0" - }, - "GRI Lineage Level 4": { - "value": "A.4.0" - }, - "GRI Lineage Level 5": { - "value": "A.4.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: K286Q; nsP1: I487V; nsP2: P404S; nsP3: A449S, P513S, S518G" - }, - "mutations": { - "E2": [ - "K286Q" - ], - "nsP1": [ - "I487V" - ], - "nsP2": [ - "P404S" - ], - "nsP3": [ - "A449S", - "P513S", - "S518G" - ], - "nuc": [ - "C1169T", - "G1499A", - "A1503G", - "T1619C", - "G2270T", - "T2582C", - "C2859T", - "C4205T", - "T4373C", - "T5276C", - "G5376T", - "C5568T", - "A5583G", - "C6677T", - "C8569T", - "C8620T", - "C8782T", - "A8911G", - "A9419C", - "C10141T", - "A10201G" - ] - } - }, - "name": "KC344486.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.22840569588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1970.101095890411, - 1970.9986301369863 - ], - "value": 1970.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1970": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.4" - }, - "GRI Lineage Level 2": { - "value": "A.4.0" - }, - "GRI Lineage Level 3": { - "value": "A.4.0" - }, - "GRI Lineage Level 4": { - "value": "A.4.0" - }, - "GRI Lineage Level 5": { - "value": "A.4.0" - } - } - } - ], - "name": "NODE_0000019", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9995966077258001 - }, - "entropy": 0.003565876515066811, - "value": "Peru" - }, - "div": 0.22656257588190187, - "num_date": { - "confidence": [ - 1970.7828127981757, - 1970.8992319217975 - ], - "value": 1970.842443784895 - }, - "region": { - "confidence": { - "LA,C": 0.999999999339977 - }, - "entropy": 1.4882379597531168e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.8861064434513507, - "1972": 0.021519582215291717, - "1973": 0.00587092259813041, - "1975": 0.015791370980630128 - }, - "entropy": 0.7390565880051646, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.4" - }, - "GRI Lineage Level 2": { - "value": "A.4.0" - }, - "GRI Lineage Level 3": { - "value": "A.4.0" - }, - "GRI Lineage Level 4": { - "value": "A.4.0" - }, - "GRI Lineage Level 5": { - "value": "A.4.0" - } - } - } - ], - "name": "NODE_0000018", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.02037527080052154, - "Peru": 0.979517897512385 - }, - "entropy": 0.10082512940040382, - "value": "Peru" - }, - "div": 0.22451041588190188, - "num_date": { - "confidence": [ - 1970.5067410305621, - 1970.6853783340118 - ], - "value": 1970.6287595257506 - }, - "region": { - "confidence": { - "LA,C": 0.9999999864401855 - }, - "entropy": 2.646505434138172e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.7769934882746028, - "1972": 0.0486816406515753, - "1973": 0.013148711538438785, - "1975": 0.016305141964677097 - }, - "entropy": 1.2929636890161764, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.4" - }, - "GRI Lineage Level 2": { - "value": "A.4" - }, - "GRI Lineage Level 3": { - "value": "A.4" - }, - "GRI Lineage Level 4": { - "value": "A.4" - }, - "GRI Lineage Level 5": { - "value": "A.4" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: A352V, M375T; nsP3: I339T, L342P, A344T, A359V; nsP4: S513T" - }, - "mutations": { - "E1": [ - "A352V", - "M375T" - ], - "nsP3": [ - "I339T", - "L342P", - "A344T", - "A359V" - ], - "nsP4": [ - "S513T" - ], - "nuc": [ - "G1232A", - "C1394T", - "C1568T", - "T1632C", - "T2036C", - "G3110A", - "G3269A", - "C3383T", - "T3413C", - "T3596C", - "T4709C", - "G4985T", - "T5047C", - "T5056C", - "G5061A", - "T5105C", - "C5107T", - "G5507A", - "T5606C", - "A5624G", - "T7025C", - "A7169G", - "T7239A", - "C7316T", - "C7612T", - "G7615A", - "C7978T", - "C8045T", - "C8140T", - "T8590C", - "G8749A", - "T8896C", - "C9326T", - "A9373G", - "T9718C", - "T9775C", - "G10075A", - "T10180C", - "G10246A", - "T10273C", - "C10576T", - "C11055T", - "T11124C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: I15T", - "GRI Lineage Root": "A.3" - }, - "mutations": { - "nsP3": [ - "I15T" - ], - "nuc": [ - "T4075C", - "C10177T", - "C10624T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: P126S; nsP1: A509V, P512S; nsP3: A61V; nsP4: I603T" - }, - "mutations": { - "E2": [ - "P126S" - ], - "nsP1": [ - "A509V", - "P512S" - ], - "nsP3": [ - "A61V" - ], - "nsP4": [ - "I603T" - ], - "nuc": [ - "C536T", - "C692T", - "T1052C", - "C1304T", - "C1496T", - "C1570T", - "C1578T", - "A1871T", - "T2204C", - "C2759T", - "C2799T", - "T3600C", - "C3780T", - "C3932T", - "T4043C", - "C4213T", - "A4478G", - "G6056A", - "C6812T", - "C7187T", - "T7510C", - "A7870G", - "C7912T", - "A7948G", - "A8212G", - "C8248T", - "C8939T", - "A9406G", - "G9748T", - "C10048T", - "C10108T", - "A10174G", - "A10183G", - "C10300T", - "A10378G" - ] - } - }, - "name": "KC344520.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.22848458588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1973.9164383561645, - 1973.9891272456357 - ], - "value": 1973.9164383561645 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1973": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.3" - }, - "GRI Lineage Level 2": { - "value": "A.3" - }, - "GRI Lineage Level 3": { - "value": "A.3" - }, - "GRI Lineage Level 4": { - "value": "A.3" - }, - "GRI Lineage Level 5": { - "value": "A.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: R68K; E3: K57Q; nsP4: H550Y", - "GRI Lineage Root": "A.3.0" - }, - "mutations": { - "CP": [ - "R68K" - ], - "E3": [ - "K57Q" - ], - "nsP4": [ - "H550Y" - ], - "nuc": [ - "C638T", - "C1632T", - "T2510C", - "C2615T", - "C3086T", - "T3428C", - "C3995T", - "T4694C", - "T4847A", - "C4872T", - "C5612T", - "T5963C", - "T6119C", - "C6437T", - "T6647C", - "G6908A", - "C6926A", - "A7346C", - "C7350T", - "G7403A", - "G7764A", - "A7897G", - "C8476T", - "A8554G", - "A8555C", - "C8725A", - "C8929T", - "A9178G", - "T9250C", - "C9265T", - "G9568A", - "T10285C", - "T10813C", - "T10856C", - "T10993C", - "G11050A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: V42L; CP: P98S; E2: V329A; E3: N40S" - }, - "mutations": { - "6k": [ - "V42L" - ], - "CP": [ - "P98S" - ], - "E2": [ - "V329A" - ], - "E3": [ - "N40S" - ], - "nuc": [ - "C1160T", - "C1169T", - "A1443C", - "C1649A", - "T5138C", - "C6711T", - "G6887A", - "C7118T", - "C7334T", - "C7487T", - "C7853T", - "A8505G", - "C8920T", - "C9295T", - "T9549C", - "G9956T", - "C10759T", - "G11251A" - ] - } - }, - "name": "KC344514.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23010110588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1978.5821917808219, - 1978.6413774829607 - ], - "value": 1978.5821917808219 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1978": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1978" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.3" - }, - "GRI Lineage Level 2": { - "value": "A.3.0" - }, - "GRI Lineage Level 3": { - "value": "A.3.0" - }, - "GRI Lineage Level 4": { - "value": "A.3.0" - }, - "GRI Lineage Level 5": { - "value": "A.3.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: T108I, E144D; nsP3: S425F" - }, - "mutations": { - "nsP1": [ - "T108I", - "E144D" - ], - "nsP3": [ - "S425F" - ], - "nuc": [ - "G329A", - "C367T", - "T467C", - "A476T", - "A3206T", - "G3215A", - "C5305T", - "C6923T", - "C7618T", - "T8173C", - "T9508C", - "C10261T" - ] - } - }, - "name": "KC344487.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.22957106588190188, - "host": { - "value": "Aedes fulvus" - }, - "num_date": { - "confidence": [ - 1977.0013698630137, - 1977.9986301369863 - ], - "value": 1977.3035642700863 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1977": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.3" - }, - "GRI Lineage Level 2": { - "value": "A.3.0" - }, - "GRI Lineage Level 3": { - "value": "A.3.0" - }, - "GRI Lineage Level 4": { - "value": "A.3.0" - }, - "GRI Lineage Level 5": { - "value": "A.3.0" - } - } - } - ], - "name": "NODE_0000022", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999996301751377 - }, - "entropy": 0.00000650611708141469, - "value": "Colombia" - }, - "div": 0.22851914588190186, - "num_date": { - "confidence": [ - 1976.701372049189, - 1977.4156241437915 - ], - "value": 1977.1990404394521 - }, - "region": { - "confidence": { - "LA,C": 0.9999999964846251 - }, - "entropy": 7.344435459323539e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1972": 0.0035963038553014077, - "1973": 0.006897905772336182, - "1977": 0.8507000524616426, - "1978": 0.09624608940940883 - }, - "entropy": 0.7123282360814013, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.3" - }, - "GRI Lineage Level 2": { - "value": "A.3.0" - }, - "GRI Lineage Level 3": { - "value": "A.3.0" - }, - "GRI Lineage Level 4": { - "value": "A.3.0" - }, - "GRI Lineage Level 5": { - "value": "A.3.0" - } - } - } - ], - "name": "NODE_0000021", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999935977262877 - }, - "entropy": 0.00008481119755132924, - "value": "Colombia" - }, - "div": 0.22537412588190187, - "num_date": { - "confidence": [ - 1973.0358827871069, - 1973.4315581528263 - ], - "value": 1973.2582715722217 - }, - "region": { - "confidence": { - "LA,C": 0.9999999951321604 - }, - "entropy": 1.00116357415728e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.011194440469087347, - "1972": 0.33566724003489945, - "1973": 0.5396563381125102, - "1977": 0.019869774567860363 - }, - "entropy": 1.3947013839903186, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.3" - }, - "GRI Lineage Level 2": { - "value": "A.3" - }, - "GRI Lineage Level 3": { - "value": "A.3" - }, - "GRI Lineage Level 4": { - "value": "A.3" - }, - "GRI Lineage Level 5": { - "value": "A.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: L358P" - }, - "mutations": { - "nsP3": [ - "L358P" - ], - "nuc": [ - "T3056A", - "C4751T", - "T5104C", - "C5492T", - "G5528A", - "T6687C", - "T6728C", - "T8731C", - "C9124T", - "A9301T", - "C10654T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP2: A61T; nsP3: A61V" - }, - "mutations": { - "nsP2": [ - "A61T" - ], - "nsP3": [ - "A61V" - ], - "nuc": [ - "A764G", - "C1172T", - "T1742C", - "G1830A", - "C2207T", - "C4019T", - "C4213T", - "C4538T", - "C6074T", - "C6134T", - "C9355A", - "C10405T", - "C10435T", - "A10495C", - "C11086T", - "C11122T", - "A11233G" - ] - } - }, - "name": "KC344502.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Colombia" - }, - "div": 0.22778103588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1972.8797447246588, - 1972.9986338797814 - ], - "value": 1972.9986338797814 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1972": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1972" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: I487V; nsP2: I677V", - "GRI Lineage Root": "A.0" - }, - "mutations": { - "nsP1": [ - "I487V" - ], - "nsP2": [ - "I677V" - ], - "nuc": [ - "T695C", - "A1503G", - "A3678G", - "C3845T", - "T4061C", - "T5174C", - "T5369C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: V352A; nsP3: I15T, P342L" - }, - "mutations": { - "E1": [ - "V352A" - ], - "nsP3": [ - "I15T", - "P342L" - ], - "nuc": [ - "C807T", - "C920T", - "A1655G", - "G1862A", - "T2660C", - "G3041A", - "G3068A", - "C3074T", - "C3230T", - "C3527T", - "T4046C", - "T4075C", - "C4154T", - "C4409T", - "G4517A", - "C5056T", - "C5618T", - "T5933A", - "C6293T", - "C6323T", - "T6605C", - "A6731G", - "T6878C", - "C7187T", - "T7585C", - "A7870G", - "G8344A", - "A8389G", - "C8689T", - "C8758T", - "A8923G", - "C9691A", - "T10492C", - "T11055C", - "G11149A", - "C11173T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: V245M; nsP1: I279V; nsP2: T122I, I597V, T647K; nsP3: V359A, A442V, N445D" - }, - "mutations": { - "CP": [ - "V245M" - ], - "nsP1": [ - "I279V" - ], - "nsP2": [ - "T122I", - "I597V", - "T647K" - ], - "nsP3": [ - "V359A", - "A442V", - "N445D" - ], - "nuc": [ - "C671T", - "C695T", - "A879G", - "A926G", - "G1298A", - "T1595C", - "C1608T", - "G1889A", - "A1910G", - "C2014T", - "G2669A", - "G2801A", - "C3014T", - "A3438G", - "C3485T", - "T3491C", - "C3589A", - "C3671T", - "A3896G", - "T3905G", - "C4010T", - "G4130A", - "C4133T", - "C4640T", - "T4727C", - "C4955T", - "T5107C", - "G5198A", - "C5234T", - "A5327G", - "C5356T", - "A5364G", - "A5441G", - "C6149T", - "C6204T", - "T6230C", - "G6440A", - "T6470C", - "T6707C", - "A7082G", - "C7196T", - "T7469C", - "T7852C", - "C7936T", - "A8104G", - "C8134T", - "G8294A", - "C8734T", - "T8905C", - "C9487T", - "C9841T", - "T10204C", - "T10213C", - "T10345C", - "A10885G", - "C11074T", - "C11279T" - ] - } - }, - "name": "KC344521.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Colombia" - }, - "div": 0.23485537588190186, - "host": { - "value": "mosquito" - }, - "num_date": { - "confidence": [ - 1999.0013698630137, - 1999.2885110856087 - ], - "value": 1999.0013698630137 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1999": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C4061T", - "A4184G", - "C4907T", - "G5789A", - "C6615A", - "A7310G", - "C8032T", - "C8275T", - "T8500C", - "A8554G", - "A9679C", - "C11158T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: A343T; E2: S184N, T213S; nsP2: I446M, L709M" - }, - "mutations": { - "E1": [ - "A343T" - ], - "E2": [ - "S184N", - "T213S" - ], - "nsP2": [ - "I446M", - "L709M" - ], - "nuc": [ - "A503C", - "A992G", - "A1067G", - "C1301T", - "C1361T", - "C1364T", - "G1478T", - "A1763G", - "C2009T", - "T2177C", - "C2273T", - "G2897T", - "A2987G", - "C3053T", - "G3071A", - "C3086T", - "G3638A", - "A3701G", - "C3774A", - "G4469A", - "T4940C", - "G5036A", - "T5138C", - "T5363C", - "C5429T", - "A5471G", - "T5618C", - "T5642C", - "A5645G", - "G5852A", - "C5870T", - "A6452G", - "G6719A", - "T6809A", - "C7025T", - "G7286A", - "T7925C", - "C8236T", - "C8374T", - "C8476T", - "C8743T", - "A8753C", - "G8941A", - "G9114A", - "A9200T", - "C9763T", - "T10285C", - "T10426C", - "C10435T", - "G11027A", - "C11032T", - "C11083T", - "T11161C" - ] - } - }, - "name": "KC344461.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23549980588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.7099138046801 - ], - "value": 2000.0013661202186 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "G275A", - "T3248C", - "C6566T", - "C9721T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: V104I; nsP4: L54R" - }, - "mutations": { - "nsP3": [ - "V104I" - ], - "nsP4": [ - "L54R" - ], - "nuc": [ - "T278C", - "T491C", - "C1448T", - "T1670C", - "C1892T", - "A2885G", - "C2949T", - "A3116T", - "C3311T", - "C3674T", - "T3719C", - "C4076T", - "C4088T", - "G4341A", - "G4718A", - "G4976A", - "T5276C", - "C5297T", - "T5863G", - "T6197C", - "C7028T", - "C7275T", - "C7873T", - "T8194C", - "G8206T", - "C9451T", - "T9760C", - "C10336T", - "A10669G", - "C10795T", - "A11358G", - "T11365C", - "C11412T" - ] - } - }, - "name": "KC344523.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23401983588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1997.9167444028183, - 1997.9986301369863 - ], - "value": 1997.9986301369863 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: K269R; nsP2: R463K, A661V", - "GRI Lineage Root": "A.0.1" - }, - "mutations": { - "nsP1": [ - "K269R" - ], - "nsP2": [ - "R463K", - "A661V" - ], - "nuc": [ - "A92G", - "A623G", - "A850G", - "G1100A", - "C2027T", - "A2696C", - "C3026T", - "G3037A", - "T3158C", - "C3407T", - "C3631T", - "C4416T", - "A5225T", - "A6299G", - "T6527C", - "G6581A", - "C6794T", - "T7331C", - "C7618T", - "C7936T", - "C8980T", - "C9832A", - "G10705A", - "T11158C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344429.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Moncayo,A.C., Medina,G.M., Kalvatchev,Z., Brault,A.C., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., De Siger,J., Vasquez,C., Walder,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Moncayo,A.C., Medina,G.M., Kalvatchev,Z., Brault,A.C., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., De Siger,J., Vasquez,C., Walder,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.2330709358819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2001.0013698630137, - 2001.898904109589 - ], - "value": 2001.0013698630137 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2001": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C326T", - "C2453T", - "T5276C", - "T9052C" - ] - } - }, - "name": "KC344462.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23341831588190187, - "host": { - "value": "Culex vomerifer" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.9986338797814 - ], - "value": 2000.9707986679123 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C8035T" - ] - }, - "labels": { - "GRI Lineage Root": "A.0.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C5841T" - ] - } - }, - "name": "KC344459.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23324425588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.9986338797814 - ], - "value": 2000.9385823979503 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2453T" - ] - } - }, - "name": "KC344460.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23324271588190187, - "host": { - "value": "Culex vomerifer" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.9986338797814 - ], - "value": 2000.9382699995751 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.1.0" - } - } - } - ], - "name": "NODE_0000030", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999999974328018 - }, - "entropy": 5.786279695401949e-8, - "value": "Colombia" - }, - "div": 0.23315607588190188, - "num_date": { - "confidence": [ - 2000.6561961345892, - 2000.9954025048753 - ], - "value": 2000.9086668358148 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741753 - }, - "entropy": 6.635622836608178e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2000": 0.9999817411218396 - }, - "entropy": 0.0002285086109957993, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.1.0" - } - } - } - ], - "name": "NODE_0000028", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999999999645705 - }, - "entropy": 9.24811964243196e-10, - "value": "Colombia" - }, - "div": 0.23306858588190188, - "num_date": { - "confidence": [ - 2000.612227851412, - 2000.9809484189054 - ], - "value": 2000.8696094762604 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999998641 - }, - "entropy": 2.8745243188766944e-12, - "value": "LA,C" - }, - "year": { - "confidence": { - "2000": 0.9967995272341977, - "2001": 0.0030846148434216063 - }, - "entropy": 0.02242919000527745, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.1" - } - } - } - ], - "name": "NODE_0000027", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999999304542821 - }, - "entropy": 0.000001338395123716435, - "value": "Colombia" - }, - "div": 0.23104128588190187, - "num_date": { - "confidence": [ - 1997.5820426069213, - 1997.7717585453895 - ], - "value": 1997.6797247144768 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993378371 - }, - "entropy": 1.493642261110591e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.5719562078021132, - "1999": 0.042002542601095344, - "2000": 0.3405339978444022, - "2001": 0.0020918262374490827 - }, - "entropy": 1.132018712426409, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000026", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999999004282554 - }, - "entropy": 0.000001867963948527488, - "value": "Colombia" - }, - "div": 0.23068894588190186, - "num_date": { - "confidence": [ - 1997.4911626522094, - 1997.719141901331 - ], - "value": 1997.592060748367 - }, - "region": { - "confidence": { - "LA,C": 0.9999999992918012 - }, - "entropy": 1.591940717087217e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.48920218383582426, - "1999": 0.07341386286199961, - "2000": 0.36583543653166173, - "2001": 0.002962859362347982 - }, - "entropy": 1.3686884208918528, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000025", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999929662836808 - }, - "entropy": 0.00010376383670483258, - "value": "Colombia" - }, - "div": 0.22977083588190186, - "num_date": { - "confidence": [ - 1996.9730604473916, - 1997.4002177912819 - ], - "value": 1997.2068466531764 - }, - "region": { - "confidence": { - "LA,C": 0.9999999496785964 - }, - "entropy": 9.175834005011792e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1981": 0.005916341121384283, - "1997": 0.3686391984974184, - "1999": 0.18599536694054114, - "2000": 0.2767022788132923 - }, - "entropy": 1.976314362645015, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: H475R; nsP2: D454E, Q572R" - }, - "mutations": { - "nsP1": [ - "H475R" - ], - "nsP2": [ - "D454E", - "Q572R" - ], - "nuc": [ - "A26C", - "T959C", - "C1292T", - "A1468G", - "G2468A", - "T3011G", - "A3364G", - "T6035C", - "T7103C", - "C7305T", - "T8722C", - "T9262C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: I20T, Q81R; nsP3: A357P" - }, - "mutations": { - "E2": [ - "I20T", - "Q81R" - ], - "nsP3": [ - "A357P" - ], - "nuc": [ - "C2684T", - "C3017T", - "G5100C", - "T5417C", - "T5964C", - "C6434T", - "T6464C", - "C6551T", - "C6801T", - "G7723A", - "C7972T", - "C8164T", - "T8622C", - "A8805G", - "C10255T", - "T11406C", - "C11407T", - "T11411C", - "C11412T", - "T11416C" - ] - } - }, - "name": "KC344508.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.0016632006435837227, - "Colombia": 0.9821878490997513, - "Panama": 0.001909450525893812, - "Peru": 0.00351458206508558 - }, - "entropy": 0.1331623140853758, - "value": "Colombia" - }, - "div": 0.2297059158819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1974.8341941708695, - 1974.9986301369863 - ], - "value": 1974.9986301369863 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1974": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1974" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: I15T" - }, - "mutations": { - "nsP3": [ - "I15T" - ], - "nuc": [ - "T4075C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: I18V; E2: T2A" - }, - "mutations": { - "E1": [ - "I18V" - ], - "E2": [ - "T2A" - ], - "nuc": [ - "G1046A", - "C2799T", - "G4139A", - "T5633C", - "C6539T", - "G6821A", - "C8252T", - "A8567G", - "C9352T", - "A10052G", - "C10057T", - "T10654C", - "C10954T", - "C11296T" - ] - } - }, - "name": "KC344509.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.004544497844524923, - "Colombia": 0.9508488256872362, - "Panama": 0.005112579475708843, - "Peru": 0.008656848905180163 - }, - "entropy": 0.31818320773727843, - "value": "Colombia" - }, - "div": 0.22909156588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1976.0013661202186, - 1976.7939749229458 - ], - "value": 1976.0013661202186 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1976": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1976" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2690T", - "T3452A", - "T7478C", - "C7651T", - "C9361T", - "C9820T", - "T11354C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: V321I; E3: R58K; nsP1: S479P, A484D; nsP2: T171I, H614R; nsP3: P343L, T349V; nsP4: I75M" - }, - "mutations": { - "E2": [ - "V321I" - ], - "E3": [ - "R58K" - ], - "nsP1": [ - "S479P", - "A484D" - ], - "nsP2": [ - "T171I", - "H614R" - ], - "nsP3": [ - "P343L", - "T349V" - ], - "nsP4": [ - "I75M" - ], - "nuc": [ - "C251T", - "A476G", - "C803T", - "T1479C", - "C1495A", - "T1913C", - "A1934G", - "T2093A", - "C2161T", - "T2486C", - "C2759T", - "T2966A", - "A3490G", - "T3515C", - "C3596T", - "C3650T", - "A3929G", - "T4388C", - "C4541T", - "T4592C", - "C5059T", - "A5076G", - "C5077T", - "C5267T", - "C5315T", - "C5573G", - "A5927G", - "C6000T", - "T6155C", - "A7073G", - "C7238T", - "C8038T", - "C8134T", - "G8559A", - "G9142A", - "C9187T", - "C9223T", - "G9524A", - "C9643T", - "A9754T", - "T9760C", - "A10174T", - "C10966G", - "A11379T" - ] - } - }, - "name": "U55362.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Australia": 0.04567568323139745, - "Colombia": 0.4792353288930772, - "Panama": 0.04953861874576711, - "Peru": 0.0724565786491501 - }, - "entropy": 2.010052419744732, - "value": "Colombia" - }, - "div": 0.2323380258819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1999.527397260274, - 1999.527397260274 - ], - "value": 1999.527397260274 - }, - "region": { - "confidence": { - "?": 0.006732324672364294, - "AUSNZ": 0.016309582776623675, - "LA,C": 0.9769580925510122 - }, - "entropy": 0.12357190584150907, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1999": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: A100V; E2: D117N; nsP2: T122I, R591C", - "GRI Lineage Root": "A.0.0" - }, - "mutations": { - "CP": [ - "A100V" - ], - "E2": [ - "D117N" - ], - "nsP2": [ - "T122I", - "R591C" - ], - "nuc": [ - "C2014T", - "A2216T", - "A2468G", - "A3062G", - "T3410C", - "C3420T", - "A4220G", - "C4529T", - "T4625C", - "A5678G", - "C6666T", - "A6701G", - "C7275T", - "A7783G", - "C7860T", - "C7972T", - "A8554G", - "G8912A", - "C9088T", - "C9364T", - "G9379A", - "C9668T", - "A10099G", - "C10516T", - "A10708G", - "C10912T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: T3I; E2: S118L; E3: P41S; nsP1: C104F; nsP2: K350E, V469A, D670A; nsP3: G498S, V499A", - "GRI Lineage Root": "A.0.0.2" - }, - "mutations": { - "6k": [ - "T3I" - ], - "E2": [ - "S118L" - ], - "E3": [ - "P41S" - ], - "nsP1": [ - "C104F" - ], - "nsP2": [ - "K350E", - "V469A", - "D670A" - ], - "nsP3": [ - "G498S", - "V499A" - ], - "nuc": [ - "G355T", - "C686T", - "T944A", - "A2696T", - "A2697G", - "T3055C", - "A3658C", - "T4295C", - "G5012A", - "T5243G", - "G5523A", - "T5527C", - "C8507T", - "C8677T", - "A8911G", - "C8916T", - "C9025T", - "T9469C", - "C9481T", - "C9840T", - "C9868T", - "G11176A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T1187C", - "G1868A", - "G8209C", - "T9802C", - "A11230G" - ] - } - }, - "name": "AF004472.2", - "node_attrs": { - "author": { - "author": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C.", - "value": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.04326900141432222, - "Colombia": 0.5088428937501545, - "Panama": 0.04704557143878269, - "Peru": 0.06946425508405446 - }, - "entropy": 1.9346560731206315, - "value": "Colombia" - }, - "div": 0.23315966588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1997.3712328767124, - 1997.3712328767124 - ], - "value": 1997.3712328767124 - }, - "region": { - "confidence": { - "?": 0.005796489239984758, - "AUSNZ": 0.014074810151788724, - "LA,C": 0.9801287006082267 - }, - "entropy": 0.10953348210875784, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.2" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A2297G", - "A2630G", - "A3521G", - "A7409G", - "A9004G" - ] - } - }, - "name": "AF004458.2", - "node_attrs": { - "author": { - "author": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C.", - "value": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.018758010126763553, - "Colombia": 0.7938739768592489, - "Panama": 0.02078488939293338, - "Peru": 0.03302541698638627 - }, - "entropy": 1.0253227507607343, - "value": "Colombia" - }, - "div": 0.23315962588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1981.8616438356164, - 1981.8616438356164 - ], - "value": 1981.8616438356164 - }, - "region": { - "confidence": { - "LA,C": 0.9992420722191936 - }, - "entropy": 0.006646859946956044, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1981": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.2" - } - } - } - ], - "name": "NODE_0000035", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.01833245800831106, - "Colombia": 0.7986398870927759, - "Panama": 0.020319225966678345, - "Peru": 0.032322924176496834 - }, - "entropy": 1.0068058752971754, - "value": "Colombia" - }, - "div": 0.23272158588190187, - "num_date": { - "confidence": [ - 1981.7944668119114, - 1981.8472182627283 - ], - "value": 1981.8307908100364 - }, - "region": { - "confidence": { - "LA,C": 0.9994968074599725 - }, - "entropy": 0.004614344452496613, - "value": "LA,C" - }, - "year": { - "confidence": { - "1976": 0.004973229376118887, - "1981": 0.8801739197626828, - "1983": 0.05073692977910859, - "1997": 0.003055114694365684 - }, - "entropy": 0.7089336966010824, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.2" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: T589A; nsP3: A433T, R450S, S484C; nsP4: V253I" - }, - "mutations": { - "nsP2": [ - "T589A" - ], - "nsP3": [ - "A433T", - "R450S", - "S484C" - ], - "nsP4": [ - "V253I" - ], - "nuc": [ - "C401T", - "T1589A", - "C1956T", - "T2153C", - "A2285G", - "G2738A", - "C2894T", - "T3195C", - "G3212T", - "A3414G", - "G3590T", - "T3743C", - "T3752C", - "T3920C", - "C4937T", - "C5174T", - "G5328A", - "G5381T", - "G5408A", - "A5441T", - "T5444C", - "A5481T", - "T5960C", - "T6401C", - "T6422C", - "G6459A", - "C6620A", - "C8038T", - "T8662C", - "C9446T", - "A9595G", - "C9706T", - "T9892C", - "A10408C", - "T10423C", - "C10435T", - "T10642C", - "A11360T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: G76R; E2: G193R, T213R; nsP1: N167D, L528F; nsP3: H212Y, T368M", - "GRI Lineage Root": "A.0.0.1" - }, - "mutations": { - "CP": [ - "G76R" - ], - "E2": [ - "G193R", - "T213R" - ], - "nsP1": [ - "N167D", - "L528F" - ], - "nsP3": [ - "H212Y", - "T368M" - ], - "nuc": [ - "T161C", - "G464A", - "A543G", - "G1628T", - "C4665T", - "C4667T", - "C5134T", - "C5792T", - "G6251A", - "C7241A", - "G7787A", - "T7834C", - "C8506T", - "T8704A", - "T9124C", - "G9140A", - "C9201G", - "T9283C", - "C9334A", - "T9896C", - "C9946T", - "C10240T", - "T10351C", - "G10462A", - "G11305A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: K384R; nsP4: I2T" - }, - "mutations": { - "E1": [ - "K384R" - ], - "nsP4": [ - "I2T" - ], - "nuc": [ - "T311C", - "C1712T", - "C2384T", - "T3380C", - "T5707C", - "T5867C", - "C7603T", - "A7744G", - "A11151G" - ] - } - }, - "name": "U55360.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Australia": 0.022173506551152963, - "Colombia": 0.7554492451766928, - "Panama": 0.02451300908475546, - "Peru": 0.03859435529807255 - }, - "entropy": 1.1698428595519021, - "value": "Colombia" - }, - "div": 0.23728399588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1983.5054794520547, - 1983.5794520547945 - ], - "value": 1983.5794520547945 - }, - "region": { - "confidence": { - "LA,C": 0.9991110447576744 - }, - "entropy": 0.0076544222557301455, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1983": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1983" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: H471L" - }, - "mutations": { - "nsP3": [ - "H471L" - ], - "nuc": [ - "C2039G", - "T3719C", - "T4373C", - "A5443T", - "T6497C", - "C8677T" - ] - } - }, - "name": "AF004459.2", - "node_attrs": { - "author": { - "author": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C.", - "value": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.03862127164136976, - "Colombia": 0.5649412337168697, - "Panama": 0.042174573174205324, - "Peru": 0.06330955117765241 - }, - "entropy": 1.7825950146017662, - "value": "Colombia" - }, - "div": 0.23684551588190186, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1993.6671232876713, - 1993.6671232876713 - ], - "value": 1993.6671232876713 - }, - "region": { - "confidence": { - "?": 0.0038944109373082662, - "AUSNZ": 0.009511227603820725, - "LA,C": 0.9865943614588711 - }, - "entropy": 0.07919984927637658, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1993": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1993" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.1" - } - } - } - ], - "name": "NODE_0000037", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.021774288152969442, - "Colombia": 0.7599569694792718, - "Panama": 0.024078133691194433, - "Peru": 0.03794998008142812 - }, - "entropy": 1.1533098386608063, - "value": "Colombia" - }, - "div": 0.23640787588190187, - "num_date": { - "confidence": [ - 1983.4409160923642, - 1983.532447964996 - ], - "value": 1983.4941612762138 - }, - "region": { - "confidence": { - "LA,C": 0.999365705203641 - }, - "entropy": 0.005671210978233638, - "value": "LA,C" - }, - "year": { - "confidence": { - "1981": 0.050258076178979094, - "1983": 0.8823787706205252, - "1993": 0.0023891391902968475, - "1997": 0.003028252417759846 - }, - "entropy": 0.6991061501189608, - "value": "1983" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: Q86P; nsP1: E106G; nsP3: P469L, R489G; nsP4: S176A", - "GRI Lineage Root": "A.0.0.0" - }, - "mutations": { - "CP": [ - "Q86P" - ], - "nsP1": [ - "E106G" - ], - "nsP3": [ - "P469L", - "R489G" - ], - "nsP4": [ - "S176A" - ], - "nuc": [ - "A361G", - "A680G", - "G1286A", - "C1844T", - "C2054T", - "C2507T", - "T2510C", - "T2786C", - "T3092C", - "C3125T", - "C3236T", - "T3425C", - "C3650T", - "C3932T", - "A4040T", - "C4061T", - "T4325C", - "C5435T", - "C5437T", - "C5480T", - "A5496G", - "C5612A", - "C6035T", - "C6080T", - "T6228G", - "C6635A", - "T6665C", - "T6861C", - "C7031T", - "A7139C", - "A7268C", - "T7347C", - "T7609C", - "G7780A", - "A7818C", - "C8620T", - "C8677T", - "G8863A", - "C9254T", - "T9694C", - "C9721T", - "A10075G", - "T10564C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: G416R" - }, - "mutations": { - "E1": [ - "G416R" - ], - "nuc": [ - "A5099G", - "G11246A" - ] - } - }, - "name": "AF100566.1", - "node_attrs": { - "author": { - "author": "Wang,E., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., Vasquez,C. and Weaver,S.C.", - "value": "Wang,E., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., Vasquez,C. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.04387591296602571, - "Colombia": 0.5014160641482603, - "Panama": 0.047676326537892076, - "Peru": 0.07023245310278614 - }, - "entropy": 1.9538829648077225, - "value": "Colombia" - }, - "div": 0.23807982588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1997.7301369863014, - 1997.7301369863014 - ], - "value": 1997.7301369863014 - }, - "region": { - "confidence": { - "LA,C": 0.9997362851086852 - }, - "entropy": 0.002595130823212425, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "MF459684.1", - "node_attrs": { - "author": { - "author": "Kutchko,K.M., Madden,E.A., Morrison,C., Plante,K.S., Sanders,W., Vincent,H.A., Long,K.M., Moorman,N.J., Heise,M.T. and Laederach,A.", - "value": "Kutchko,K.M., Madden,E.A., Morrison,C., Plante,K.S., Sanders,W., Vincent,H.A., Long,K.M., Moorman,N.J., Heise,M.T. and Laederach,A." - }, - "country": { - "confidence": { - "Australia": 0.05929821395901037, - "Colombia": 0.29976791996733687, - "Panama": 0.06303746558860963, - "Peru": 0.08553495860628577 - }, - "entropy": 2.39344583345726, - "value": "Colombia" - }, - "div": 0.2379075658819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2017.5191780821917, - 2017.5191780821917 - ], - "value": 2017.5191780821917 - }, - "region": { - "confidence": { - "?": 0.007201760020568326, - "AUSNZ": 0.017389141439703354, - "LA,C": 0.9754090985397283 - }, - "entropy": 0.13027463797380295, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2017": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2017" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344513.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.04387591296602571, - "Colombia": 0.5014160641482603, - "Panama": 0.047676326537892076, - "Peru": 0.07023245310278614 - }, - "entropy": 1.9538829648077225, - "value": "Colombia" - }, - "div": 0.23790722588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1997.6441181216678, - 1997.7533977099604 - ], - "value": 1997.7102447654115 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.0" - } - } - } - ], - "name": "NODE_0000038", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.043646863962306034, - "Colombia": 0.5042219667106093, - "Panama": 0.04743843626548195, - "Peru": 0.06994357552767966 - }, - "entropy": 1.9466436709655763, - "value": "Colombia" - }, - "div": 0.2379052158819019, - "num_date": { - "confidence": [ - 1997.6424857394559, - 1997.7236640484139 - ], - "value": 1997.6977287055163 - }, - "region": { - "confidence": { - "LA,C": 0.9999913030827305 - }, - "entropy": 0.00011457046940622928, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.9996633394926573 - }, - "entropy": 0.004290917845020774, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.0" - } - } - } - ], - "name": "NODE_0000036", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.02110960675811823, - "Colombia": 0.7674522311200107, - "Panama": 0.023353553819825235, - "Peru": 0.036873200944360675 - }, - "entropy": 1.1255784582009882, - "value": "Colombia" - }, - "div": 0.2342113158819019, - "num_date": { - "confidence": [ - 1983.0439101738566, - 1983.2724793860593 - ], - "value": 1983.1645454082416 - }, - "region": { - "confidence": { - "LA,C": 0.999785722187205 - }, - "entropy": 0.002136199146246469, - "value": "LA,C" - }, - "year": { - "confidence": { - "1976": 0.005185589323045499, - "1981": 0.13975954173625926, - "1983": 0.7082445696800937, - "1997": 0.006824961170237169 - }, - "entropy": 1.384928563164749, - "value": "1983" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0" - } - } - } - ], - "name": "NODE_0000034", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.017798126688538272, - "Colombia": 0.8046175642418076, - "Panama": 0.01973418111235808, - "Peru": 0.031438248418348656 - }, - "entropy": 0.9833853399864737, - "value": "Colombia" - }, - "div": 0.23086963588190187, - "num_date": { - "confidence": [ - 1981.4846627398176, - 1981.6706347709878 - ], - "value": 1981.5818183720103 - }, - "region": { - "confidence": { - "LA,C": 0.9998141196848849 - }, - "entropy": 0.0018795246852003537, - "value": "LA,C" - }, - "year": { - "confidence": { - "1976": 0.010916184729875362, - "1981": 0.7453790913153734, - "1983": 0.11716559325540511, - "1997": 0.005957550830214258 - }, - "entropy": 1.2605111028891494, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0" - } - } - } - ], - "name": "NODE_0000033", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.01679189587947113, - "Colombia": 0.815855230104186, - "Panama": 0.018631412917173004, - "Peru": 0.02976449100884851 - }, - "entropy": 0.9387495963247081, - "value": "Colombia" - }, - "div": 0.22849284588190188, - "num_date": { - "confidence": [ - 1980.8870097999043, - 1981.2617272369707 - ], - "value": 1981.1193153614888 - }, - "region": { - "confidence": { - "LA,C": 0.999824301473533 - }, - "entropy": 0.0017864701024133997, - "value": "LA,C" - }, - "year": { - "confidence": { - "1976": 0.02881796750593176, - "1981": 0.5778017664253214, - "1983": 0.09699670378150144, - "1997": 0.011427028156286835 - }, - "entropy": 2.1308680502253425, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000212", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.0040102029846040745, - "Colombia": 0.9566710647474986, - "Panama": 0.004519196263860151, - "Peru": 0.007707949843161691 - }, - "entropy": 0.2859871809515546, - "value": "Colombia" - }, - "div": 0.22786381588190188, - "num_date": { - "confidence": [ - 1975.6714475597435, - 1976.582030743426 - ], - "value": 1975.8605683975925 - }, - "region": { - "confidence": { - "LA,C": 0.9999999849886704 - }, - "entropy": 2.918784707853492e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1972": 0.005283520316083703, - "1974": 0.1068893309822168, - "1976": 0.8304071307038825, - "1981": 0.004252824952550612 - }, - "entropy": 0.8009755367998637, - "value": "1976" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000031", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.0011070011119603581, - "Colombia": 0.9882212457844984, - "Panama": 0.001290243291897546, - "Peru": 0.0025149503342181403 - }, - "entropy": 0.09267747563547214, - "value": "Colombia" - }, - "div": 0.22786381588190188, - "num_date": { - "confidence": [ - 1974.7172641774068, - 1974.8694313454869 - ], - "value": 1974.7995419507415 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997950203 - }, - "entropy": 4.858577184872647e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1972": 0.03363211739805653, - "1973": 0.003852874078408351, - "1974": 0.8301609190568094, - "1976": 0.08922881482025616 - }, - "entropy": 0.8037063815247377, - "value": "1974" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000024", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9953042573020886, - "Peru": 0.001337521336792121 - }, - "entropy": 0.04065885022307984, - "value": "Colombia" - }, - "div": 0.22670337588190187, - "num_date": { - "confidence": [ - 1974.4231196584954, - 1974.6891696101663 - ], - "value": 1974.5664495501833 - }, - "region": { - "confidence": { - "LA,C": 0.9999999706536684 - }, - "entropy": 5.509387683552069e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1972": 0.10124348065297763, - "1973": 0.011705379901022418, - "1974": 0.6959220451888428, - "1976": 0.0764555794823826 - }, - "entropy": 1.4135938046128371, - "value": "1974" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000023", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999673718421146 - }, - "entropy": 0.00037293026234872987, - "value": "Colombia" - }, - "div": 0.22620141588190187, - "num_date": { - "confidence": [ - 1972.770574420757, - 1972.8971748862302 - ], - "value": 1972.8361441111904 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997728336 - }, - "entropy": 5.365093166397302e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.009414182364046855, - "1972": 0.8619157027395382, - "1973": 0.07318417095368533, - "1974": 0.02195958688377747 - }, - "entropy": 0.6838326369578114, - "value": "1972" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000020", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9997646430197754 - }, - "entropy": 0.0022197840117442924, - "value": "Colombia" - }, - "div": 0.22520832588190187, - "num_date": { - "confidence": [ - 1972.5529082443136, - 1972.757729724966 - ], - "value": 1972.6771145028897 - }, - "region": { - "confidence": { - "LA,C": 0.9999999990512265 - }, - "entropy": 2.1060251843575146e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.022056368059578467, - "1972": 0.7252438764416685, - "1973": 0.170585789563398, - "1974": 0.018227975762299863 - }, - "entropy": 1.1023804548131624, - "value": "1972" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000017", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.25878256402447397, - "Peru": 0.7393321108818024 - }, - "entropy": 0.5893807788716093, - "value": "Peru" - }, - "div": 0.22296210588190188, - "num_date": { - "confidence": [ - 1970.0146125995484, - 1970.3967650783281 - ], - "value": 1970.2167563605217 - }, - "region": { - "confidence": { - "LA,C": 0.9999997861644806 - }, - "entropy": 0.0000035907186206528837, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.5977658099553602, - "1972": 0.1054115942541935, - "1973": 0.027808723037702793, - "1975": 0.016500375396095612 - }, - "entropy": 2.0114063403642652, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000014", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9916194882526546, - "Panama": 0.0014786857899371803, - "Peru": 0.006620327258906081 - }, - "entropy": 0.05411497054813109, - "value": "Colombia" - }, - "div": 0.22269678588190187, - "num_date": { - "confidence": [ - 1905.2332008400324, - 1905.3002479864174 - ], - "value": 1905.281698364595 - }, - "region": { - "confidence": { - "LA,C": 0.9999999889062585 - }, - "entropy": 2.1886414360937348e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.719764688922431, - "1961": 0.008731130049968758, - "2003": 0.007694138761599587, - "2018": 0.008677593612798719 - }, - "entropy": 1.6700464119319745, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000012", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.988178665652014, - "Panama": 0.002841780721848681, - "Peru": 0.008386640124401507 - }, - "entropy": 0.07422182625118523, - "value": "Colombia" - }, - "div": 0.22223647588190187, - "num_date": { - "confidence": [ - 1905.2178529879022, - 1905.28638177016 - ], - "value": 1905.2602561127442 - }, - "region": { - "confidence": { - "LA,C": 0.9999999876500475 - }, - "entropy": 2.420890550297016e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.6454887681979521, - "1961": 0.010818919363830297, - "2003": 0.009612567530526042, - "2018": 0.010807256155940024 - }, - "entropy": 2.012771091668254, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000011", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9805327670262782, - "Panama": 0.006119286125641385, - "Peru": 0.011864013543444523 - }, - "entropy": 0.11606416628699698, - "value": "Colombia" - }, - "div": 0.22188698588190187, - "num_date": { - "confidence": [ - 1905.2010861403687, - 1905.2760216653621 - ], - "value": 1905.233860772856 - }, - "region": { - "confidence": { - "LA,C": 0.9999999710915601 - }, - "entropy": 5.407066053521536e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.579115784929235, - "1961": 0.012586826908961448, - "2003": 0.011274463831422887, - "2018": 0.012636435869712066 - }, - "entropy": 2.2985636541082504, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000040", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9621286247545444, - "Panama": 0.014074290569288841, - "Peru": 0.020278188976103263 - }, - "entropy": 0.2040064516889992, - "value": "Colombia" - }, - "div": 0.21262962588190187, - "num_date": { - "confidence": [ - 1904.6390478086184, - 1904.8789782327376 - ], - "value": 1904.748642977498 - }, - "region": { - "confidence": { - "LA,C": 0.9999997802811075 - }, - "entropy": 0.000003617366426489838, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.44596934847210773, - "1961": 0.015805698378200655, - "2003": 0.014431982436345333, - "2018": 0.016057165232290716 - }, - "entropy": 2.817953861923637, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000062", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.0016349735397621853, - "Colombia": 0.9438140071754046, - "Panama": 0.026855366625045885, - "Peru": 0.02175081606325656 - }, - "entropy": 0.2892582333915326, - "value": "Colombia" - }, - "div": 0.20675917588190187, - "num_date": { - "confidence": [ - 1904.1844396292806, - 1904.557956385685 - ], - "value": 1904.370455066759 - }, - "region": { - "confidence": { - "LA,C": 0.9999971876366979 - }, - "entropy": 0.00003907868995256812, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.3646612173653449, - "1961": 0.017509092381239152, - "2003": 0.01621843302538966, - "2018": 0.017946046474526155 - }, - "entropy": 3.0999812148733707, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000063", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.0035717240857552116, - "Colombia": 0.918713763300258, - "Panama": 0.03917901600105259, - "Peru": 0.02503901597446963 - }, - "entropy": 0.40574064236834206, - "value": "Colombia" - }, - "div": 0.19897762588190188, - "num_date": { - "confidence": [ - 1903.344656383954, - 1903.8558629854774 - ], - "value": 1903.6044187701293 - }, - "region": { - "confidence": { - "LA,C": 0.9999660376187114 - }, - "entropy": 0.0003876725553238178, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.24457298343763126, - "1961": 0.019533171617723395, - "2003": 0.018589432103726003, - "2018": 0.020357947211796897 - }, - "entropy": 3.4631763533740796, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000081", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.02832303821302187, - "Colombia": 0.746347949586664, - "Panama": 0.060113940451042444, - "Peru": 0.05884312477173358 - }, - "entropy": 1.1346491081900025, - "value": "Colombia" - }, - "div": 0.15681126588190186, - "num_date": { - "confidence": [ - 1895.1297710092251, - 1896.9044719894887 - ], - "value": 1896.1263672521156 - }, - "region": { - "confidence": { - "AUSNZ": 0.0030404409306991815, - "LA,C": 0.9968629989871087 - }, - "entropy": 0.021646450582498276, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.02470739445892686, - "1973": 0.02141267939710405, - "1997": 0.022077329032033636, - "2018": 0.022066419189128675 - }, - "entropy": 3.870590355116553, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000083", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.44806667028975, - "Mexico": 0.04903326279552259, - "Panama": 0.10928033621660015, - "Peru": 0.12590051786484113 - }, - "entropy": 1.9722371672531818, - "value": "Colombia" - }, - "div": 0.05155828588190187, - "num_date": { - "confidence": [ - 1874.4685325058429, - 1879.213676573385 - ], - "value": 1877.028999985536 - }, - "region": { - "confidence": { - "AUSNZ": 0.0014030177554253203, - "LA,C": 0.9984994800828956 - }, - "entropy": 0.011616493824780617, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.021511293553895833, - "1997": 0.022187063087030584, - "2000": 0.02144604600942689, - "2018": 0.021927403270672375 - }, - "entropy": 3.870914405538639, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000000", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.35764207116186425, - "Mexico": 0.05084214193175139, - "Panama": 0.10113568034990976, - "Peru": 0.16009240483062728 - }, - "entropy": 2.1647940919749296, - "value": "Colombia" - }, - "div": 0, - "num_date": { - "confidence": [ - 1864.06229215943, - 1870.174711451499 - ], - "value": 1867.384095048895 - }, - "region": { - "confidence": { - "AUSNZ": 0.0023092016227335916, - "LA,C": 0.9972949656798725 - }, - "entropy": 0.01982135576093214, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.02151129693922035, - "1997": 0.022187067602694923, - "2000": 0.021446049858752918, - "2018": 0.02192738789977543 - }, - "entropy": 3.8709144057964737, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - "version": "v2", - "treed": { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "Root" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: S6T, I20L, V32I, L35I, V42F, V48L; CP: M13A, F19Y, A20P, F27Y, M36L, D55E, A56S, A70P, P71Q, K73A, E74A, N75T, R76P, G77I, Q78K, G80A, K81Q, K84N, N85G, Q86K, K92P, T93K, P95A, P96V, H97Q, E100N, N102P, G103A, N104S, A108P, D160E, V161T, S171T, K190R, S201N, N259T; E1: A11V, Y15F, P28A, K37Q, L38I, V42L, M55L, I60V, P70E, T71V, Y72T, Q77K, T101S, L115A, S128A, V129A, G138A, E139D, H140Q, V159I, K160R, G182E, I184V, H196T, I208T, S209T, S211T, A226S, A228T, I229V, F253Y, Y262K, T263V, I266N, R267Q, A268T, E269Q, T288N, R289F, S291F, A298N, T317S, S323T, S325A, V332I, L339V, K340R, A343T, E345D, A347V, A352L, I354V, S372T, L410I, I420L, I421V, I422V, V426I, T429I, M433T, N438G, K440R, H441R, N442Y; E2: R13K, R18K, A35E, K37R, V45I, L47I, S57P, N60G, L61V, G63S, D69N, M70L, H71Q, T73N, Q81E, A106E, I110L, S118T, E128K, N132I, A147T, E148D, Q149H, Q152R, N160K, S184G, S185A, H187Q, T189N, S195N, E201N, K206Q, I211V, N212S, A214V, Q216K, S218N, K222Q, D224N, Q225R, N233S, Y238F, A262S, M275V, I276V, T277S, K290N, Q299H, D301G, H305Q, A315V, R317K, T320S, V321I, L351M, V355I, I356V, H361Y, I368V, L369V, T379I, V382I, T386L, W387C, F389L, M408L, L410I, V414L, T420P, A421T; E3: T5A, M6V, A28S, V36E, V38I, E45V, E48D, A49S, K57Q; nsP1: E28G, H76N, E106D, E111G, K114Q, M116L, K117A, E118D, S124Q, D125E, D127S, T130R, T132S, V147I, M225L, N238T, V239I, L240I, K269T, Q270H, K299T, K396R, E403D, R424K, I440V, I441V, N444P, I455V, T466D, R469K, E474K, H475P, S479V, I482V, A484D, Q488G, D495A, V500I, A514T; nsP2: A16S, D19E, V26I, S39A, P43A, V70I, H75T, Q80P, T108V, S126G, E127D, H128Y, T148S, L152M, V157I, D158E, R170K, Y177H, K223H, M224A, K225R, H244Y, I269V, R270K, R328K, P334Q, K338Q, D352E, T405N, D441E, T443S, I446L, R458K, L461M, K463E, D465N, T467A, D492S, T495A, E496D, D502E, Y503N, L532I, R543K, L558I, K560M, E561D, A578T, V582A, Y583L, T587S, T589A, N592A, V602M, H613N, T615S, H619P, A624T, E639D, P644T, R654S, A661T, G669A, K686R, I720V, I736V, S743A, V750I, K767R, A768T, T785S, R788N, L789F; nsP3: T15E, E16D, K26R, A62K, V79I, I92V, I95L, L132M, M150T, S171A, V173L, A178V, T197I, S198T, M218V, I227N, V235I, S263N, H312C, K328R, A331P, E332R, T333P, P334L, E341K, P342L, E351V, T352E, P353R, E354A, Q355G, A357P, L358A, A359S, T360N, D362E, T364A, R365T, A366E, R367E, T368N, P369F, P371T, I373S, I374V, E375V, E376D, E377S, E378V, E379V, D380S, I382E, M384T, L385A, S386E, E387T, G388N, P389L, H391D, V393T, H394Q, Q395S, G402A, P403L, P404D, S405A, V406F, F407L, S408R, S410T, V421A, L424I, V426L, S441L, A442S, N445K, S446F, Y447S, F448S, A449T, K450S, L452S, E453D, F454A, L455G, A456I, V459I, V465I, N468Q, P469A, K473R, S484N, R485*, R489S, T490A, V493S, S494P, S514I, R515H, P517R, S518R, R519Q, A521G, V527A, F553Y, D554E; nsP4: E31L, E33D, I34D, S35V, E43N, R68K, R78M, I80M, Q82R, A90T, E91D, G92N, H101Y, A108S, A113S, S116C, A126V, I141T, S155T, E238D, K241R, E242D, V253T, N275C, I341V, P362H, C365Q, P397Q, V440I, S513T, L549V, H550F, S553A, T554E, V559A, F562S, P563V, T575I, M583A, T586A, S590R, S591N, E593A, S594T, S596K, Y597H, A601N, T604H" - }, - "mutations": { - "6k": [ - "S6T", - "I20L", - "V32I", - "L35I", - "V42F", - "V48L" - ], - "CP": [ - "M13A", - "F19Y", - "A20P", - "F27Y", - "M36L", - "D55E", - "A56S", - "A70P", - "P71Q", - "K73A", - "E74A", - "N75T", - "R76P", - "G77I", - "Q78K", - "G80A", - "K81Q", - "K84N", - "N85G", - "Q86K", - "K92P", - "T93K", - "P95A", - "P96V", - "H97Q", - "E100N", - "N102P", - "G103A", - "N104S", - "A108P", - "D160E", - "V161T", - "S171T", - "K190R", - "S201N", - "N259T" - ], - "E1": [ - "A11V", - "Y15F", - "P28A", - "K37Q", - "L38I", - "V42L", - "M55L", - "I60V", - "P70E", - "T71V", - "Y72T", - "Q77K", - "T101S", - "L115A", - "S128A", - "V129A", - "G138A", - "E139D", - "H140Q", - "V159I", - "K160R", - "G182E", - "I184V", - "H196T", - "I208T", - "S209T", - "S211T", - "A226S", - "A228T", - "I229V", - "F253Y", - "Y262K", - "T263V", - "I266N", - "R267Q", - "A268T", - "E269Q", - "T288N", - "R289F", - "S291F", - "A298N", - "T317S", - "S323T", - "S325A", - "V332I", - "L339V", - "K340R", - "A343T", - "E345D", - "A347V", - "A352L", - "I354V", - "S372T", - "L410I", - "I420L", - "I421V", - "I422V", - "V426I", - "T429I", - "M433T", - "N438G", - "K440R", - "H441R", - "N442Y" - ], - "E2": [ - "R13K", - "R18K", - "A35E", - "K37R", - "V45I", - "L47I", - "S57P", - "N60G", - "L61V", - "G63S", - "D69N", - "M70L", - "H71Q", - "T73N", - "Q81E", - "A106E", - "I110L", - "S118T", - "E128K", - "N132I", - "A147T", - "E148D", - "Q149H", - "Q152R", - "N160K", - "S184G", - "S185A", - "H187Q", - "T189N", - "S195N", - "E201N", - "K206Q", - "I211V", - "N212S", - "A214V", - "Q216K", - "S218N", - "K222Q", - "D224N", - "Q225R", - "N233S", - "Y238F", - "A262S", - "M275V", - "I276V", - "T277S", - "K290N", - "Q299H", - "D301G", - "H305Q", - "A315V", - "R317K", - "T320S", - "V321I", - "L351M", - "V355I", - "I356V", - "H361Y", - "I368V", - "L369V", - "T379I", - "V382I", - "T386L", - "W387C", - "F389L", - "M408L", - "L410I", - "V414L", - "T420P", - "A421T" - ], - "E3": [ - "T5A", - "M6V", - "A28S", - "V36E", - "V38I", - "E45V", - "E48D", - "A49S", - "K57Q" - ], - "nsP1": [ - "E28G", - "H76N", - "E106D", - "E111G", - "K114Q", - "M116L", - "K117A", - "E118D", - "S124Q", - "D125E", - "D127S", - "T130R", - "T132S", - "V147I", - "M225L", - "N238T", - "V239I", - "L240I", - "K269T", - "Q270H", - "K299T", - "K396R", - "E403D", - "R424K", - "I440V", - "I441V", - "N444P", - "I455V", - "T466D", - "R469K", - "E474K", - "H475P", - "S479V", - "I482V", - "A484D", - "Q488G", - "D495A", - "V500I", - "A514T" - ], - "nsP2": [ - "A16S", - "D19E", - "V26I", - "S39A", - "P43A", - "V70I", - "H75T", - "Q80P", - "T108V", - "S126G", - "E127D", - "H128Y", - "T148S", - "L152M", - "V157I", - "D158E", - "R170K", - "Y177H", - "K223H", - "M224A", - "K225R", - "H244Y", - "I269V", - "R270K", - "R328K", - "P334Q", - "K338Q", - "D352E", - "T405N", - "D441E", - "T443S", - "I446L", - "R458K", - "L461M", - "K463E", - "D465N", - "T467A", - "D492S", - "T495A", - "E496D", - "D502E", - "Y503N", - "L532I", - "R543K", - "L558I", - "K560M", - "E561D", - "A578T", - "V582A", - "Y583L", - "T587S", - "T589A", - "N592A", - "V602M", - "H613N", - "T615S", - "H619P", - "A624T", - "E639D", - "P644T", - "R654S", - "A661T", - "G669A", - "K686R", - "I720V", - "I736V", - "S743A", - "V750I", - "K767R", - "A768T", - "T785S", - "R788N", - "L789F" - ], - "nsP3": [ - "T15E", - "E16D", - "K26R", - "A62K", - "V79I", - "I92V", - "I95L", - "L132M", - "M150T", - "S171A", - "V173L", - "A178V", - "T197I", - "S198T", - "M218V", - "I227N", - "V235I", - "S263N", - "H312C", - "K328R", - "A331P", - "E332R", - "T333P", - "P334L", - "E341K", - "P342L", - "E351V", - "T352E", - "P353R", - "E354A", - "Q355G", - "A357P", - "L358A", - "A359S", - "T360N", - "D362E", - "T364A", - "R365T", - "A366E", - "R367E", - "T368N", - "P369F", - "P371T", - "I373S", - "I374V", - "E375V", - "E376D", - "E377S", - "E378V", - "E379V", - "D380S", - "I382E", - "M384T", - "L385A", - "S386E", - "E387T", - "G388N", - "P389L", - "H391D", - "V393T", - "H394Q", - "Q395S", - "G402A", - "P403L", - "P404D", - "S405A", - "V406F", - "F407L", - "S408R", - "S410T", - "V421A", - "L424I", - "V426L", - "S441L", - "A442S", - "N445K", - "S446F", - "Y447S", - "F448S", - "A449T", - "K450S", - "L452S", - "E453D", - "F454A", - "L455G", - "A456I", - "V459I", - "V465I", - "N468Q", - "P469A", - "K473R", - "S484N", - "R485*", - "R489S", - "T490A", - "V493S", - "S494P", - "S514I", - "R515H", - "P517R", - "S518R", - "R519Q", - "A521G", - "V527A", - "F553Y", - "D554E" - ], - "nsP4": [ - "E31L", - "E33D", - "I34D", - "S35V", - "E43N", - "R68K", - "R78M", - "I80M", - "Q82R", - "A90T", - "E91D", - "G92N", - "H101Y", - "A108S", - "A113S", - "S116C", - "A126V", - "I141T", - "S155T", - "E238D", - "K241R", - "E242D", - "V253T", - "N275C", - "I341V", - "P362H", - "C365Q", - "P397Q", - "V440I", - "S513T", - "L549V", - "H550F", - "S553A", - "T554E", - "V559A", - "F562S", - "P563V", - "T575I", - "M583A", - "T586A", - "S590R", - "S591N", - "E593A", - "S594T", - "S596K", - "Y597H", - "A601N", - "T604H" - ], - "nuc": [ - "A127G", - "T143C", - "T185C", - "A188C", - "C192T", - "A200G", - "G209A", - "T236A", - "A239C", - "G245A", - "C248G", - "C251A", - "A255C", - "T266A", - "C270A", - "C287T", - "T290C", - "G293A", - "G305A", - "G323A", - "G329A", - "A335G", - "T338G", - "G341A", - "G344A", - "G359A", - "A362C", - "A368G", - "G374A", - "A376G", - "T378C", - "G380A", - "C383T", - "A384C", - "A390C", - "G392A", - "A393G", - "A394C", - "G395A", - "G398T", - "C401T", - "C407A", - "A414C", - "G415A", - "C416G", - "C419A", - "G423T", - "A424C", - "C426T", - "G428A", - "A431G", - "A432C", - "C433G", - "T434A", - "G437A", - "A438T", - "T440G", - "C446T", - "C449T", - "C452T", - "G464A", - "T467C", - "A482G", - "G483A", - "C485T", - "T491C", - "G497A", - "A503C", - "C506T", - "T512A", - "G521T", - "A524T", - "C536T", - "C545T", - "A551T", - "T554A", - "A557G", - "C566T", - "A572T", - "C584T", - "C587G", - "C605T", - "G608A", - "T611C", - "A614C", - "T620C", - "A623C", - "C629T", - "T632G", - "C653A", - "G662A", - "C671T", - "C683T", - "C686T", - "C692T", - "T695A", - "G701A", - "A707C", - "C708A", - "T710G", - "G716A", - "A717C", - "G719A", - "T740C", - "A749G", - "C752A", - "T755C", - "A757C", - "G759A", - "C762A", - "C767T", - "T770G", - "C782T", - "C788T", - "G794A", - "T804C", - "A810C", - "C822T", - "G827A", - "T830A", - "A833G", - "T836C", - "C839T", - "T845C", - "C848T", - "A850C", - "A854T", - "A863G", - "T878G", - "T884A", - "T887C", - "A908G", - "A914T", - "A940C", - "A947G", - "T956G", - "C968T", - "C986T", - "G995C", - "A998G", - "C1001T", - "C1022T", - "G1034A", - "C1037T", - "T1043C", - "A1049T", - "A1055C", - "A1067G", - "T1073A", - "C1076T", - "A1085G", - "T1091C", - "C1094A", - "T1097C", - "G1100A", - "C1103T", - "G1109T", - "A1112G", - "A1115G", - "T1124A", - "G1127A", - "C1130T", - "C1139G", - "A1142T", - "C1145A", - "T1154A", - "C1160T", - "C1172T", - "C1178T", - "T1190C", - "C1191T", - "T1194C", - "C1199A", - "C1208T", - "T1217C", - "A1231G", - "A1235G", - "T1238C", - "A1244G", - "T1247C", - "A1250G", - "A1253C", - "A1260C", - "A1262T", - "A1265G", - "C1272T", - "A1274G", - "A1283C", - "T1287C", - "A1292G", - "G1298A", - "C1301T", - "T1310C", - "G1315A", - "C1322T", - "A1328C", - "A1331T", - "T1340C", - "A1349G", - "C1361G", - "A1362G", - "C1364A", - "A1365G", - "C1367A", - "A1374C", - "A1375C", - "C1379T", - "C1388T", - "G1397T", - "C1403A", - "A1407G", - "C1412G", - "T1415C", - "C1418T", - "A1421T", - "G1427A", - "G1433C", - "G1436C", - "A1440G", - "C1441A", - "A1443C", - "C1448T", - "G1450A", - "A1463G", - "G1464A", - "G1466A", - "A1468C", - "C1469A", - "A1478T", - "T1479G", - "C1480T", - "T1484G", - "A1488G", - "T1493A", - "C1495A", - "A1505C", - "C1506G", - "A1507G", - "A1508C", - "C1526T", - "A1528C", - "T1535G", - "G1538A", - "G1541A", - "G1542A", - "G1547A", - "C1553A", - "G1556A", - "G1559A", - "C1565G", - "A1571C", - "A1574G", - "A1577G", - "T1580C", - "T1581C", - "G1584A", - "T1592C", - "G1598A", - "C1604G", - "T1607G", - "G1610C", - "C1616A", - "C1622T", - "T1626C", - "G1628C", - "G1640A", - "T1643A", - "C1652A", - "A1664G", - "T1667G", - "G1695A", - "C1696G", - "C1700T", - "C1706G", - "C1715T", - "A1724T", - "G1725A", - "G1727A", - "T1730C", - "T1733A", - "A1736G", - "T1742C", - "A1745G", - "C1746T", - "C1748A", - "G1751C", - "G1757A", - "A1763T", - "T1764G", - "T1766G", - "C1769T", - "C1775T", - "C1776G", - "A1790G", - "C1793G", - "C1802T", - "A1805C", - "C1808T", - "T1811C", - "A1817G", - "G1823T", - "C1824A", - "T1826G", - "C1832A", - "C1841G", - "C1844T", - "G1857A", - "G1859T", - "G1862A", - "G1871C", - "C1872A", - "A1873C", - "T1874C", - "A1877C", - "A1880T", - "C1883T", - "C1886G", - "A1888C", - "G1889T", - "C1892T", - "A1898G", - "C1919G", - "T1922A", - "C1928T", - "A1937G", - "C1956T", - "T1967C", - "C1970G", - "A1971G", - "C1972T", - "A1973C", - "T1976C", - "A1982G", - "G1988T", - "C1991T", - "A1994C", - "T1997C", - "T2006C", - "C2009T", - "A2012G", - "G2015A", - "C2018G", - "G2021A", - "C2024T", - "A2025G", - "A2030C", - "C2031T", - "C2039A", - "C2045T", - "G2048A", - "C2054T", - "C2057A", - "G2063A", - "C2075G", - "A2087G", - "C2090T", - "C2092G", - "T2093C", - "G2096T", - "C2103A", - "A2108G", - "C2111T", - "G2114A", - "G2117C", - "G2118A", - "G2120T", - "T2123A", - "T2126C", - "C2129A", - "C2132T", - "A2138G", - "G2150A", - "G2158A", - "A2159G", - "A2162T", - "C2163A", - "G2168T", - "T2177C", - "T2178C", - "A2189T", - "C2192T", - "A2195T", - "C2207A", - "G2210A", - "A2216T", - "A2219T", - "C2222T", - "G2225A", - "C2231A", - "T2237A", - "A2240G", - "C2252G", - "A2255G", - "C2262T", - "G2264A", - "G2267A", - "G2270T", - "C2276T", - "G2279A", - "C2288T", - "C2291T", - "A2294G", - "A2300T", - "A2303C", - "G2306A", - "G2315A", - "A2316C", - "A2318C", - "A2319G", - "T2320C", - "G2321T", - "A2323G", - "C2342G", - "A2345G", - "A2357C", - "G2360A", - "T2364C", - "T2369C", - "A2372T", - "C2375T", - "A2378G", - "C2379T", - "T2387C", - "G2390A", - "C2394T", - "G2396A", - "A2417G", - "T2420C", - "T2423C", - "C2429A", - "T2432C", - "C2435T", - "A2438G", - "G2441C", - "A2447T", - "C2450G", - "C2453T", - "A2454G", - "A2456C", - "G2458A", - "A2459G", - "T2462C", - "G2468A", - "A2471C", - "C2475T", - "A2477G", - "T2486C", - "A2489T", - "A2492G", - "G2495A", - "C2498T", - "C2501G", - "T2510C", - "A2525G", - "G2528A", - "T2531C", - "T2534C", - "C2537T", - "G2552A", - "G2555A", - "C2558G", - "C2564T", - "A2567G", - "C2573A", - "T2576G", - "G2582A", - "T2588C", - "A2591G", - "G2603T", - "A2630G", - "G2632A", - "A2639G", - "C2642A", - "C2650A", - "T2660G", - "A2661C", - "G2663A", - "T2666C", - "T2672C", - "C2675T", - "T2678C", - "T2681A", - "C2684G", - "T2687C", - "C2690G", - "A2693G", - "A2696T", - "C2705G", - "C2709T", - "C2711G", - "T2714C", - "T2723C", - "A2727C", - "G2744A", - "A2750G", - "A2753T", - "T2756C", - "A2774C", - "G2780A", - "A2783G", - "T2786A", - "C2789A", - "T2792G", - "G2801A", - "A2810G", - "T2825C", - "G2837C", - "T2846C", - "C2849G", - "C2855T", - "A2858C", - "C2863A", - "C2864T", - "A2867C", - "T2873C", - "C2882T", - "C2891T", - "C2894A", - "G2906A", - "G2912T", - "A2918G", - "T2921C", - "A2924G", - "A2927G", - "C2930T", - "A2936C", - "A2942T", - "A2945G", - "G2954C", - "T2966A", - "A2969T", - "T2972A", - "A2976T", - "T2978A", - "C2981G", - "A2985C", - "A3002T", - "G3005A", - "T3011C", - "C3017T", - "G3022A", - "T3030A", - "G3035A", - "A3036G", - "G3041T", - "G3042A", - "A3048G", - "T3065C", - "G3077T", - "T3080C", - "C3086T", - "G3089A", - "T3093C", - "A3095T", - "G3098C", - "A3104G", - "G3110A", - "T3113A", - "C3119A", - "A3122T", - "G3123T", - "A3124C", - "C3131G", - "A3132G", - "A3137C", - "C3146T", - "T3149C", - "G3152C", - "T3155A", - "T3156A", - "C3161T", - "G3167T", - "T3176G", - "A3182T", - "A3191T", - "A3194G", - "G3197A", - "C3200T", - "G3212A", - "T3221C", - "A3224G", - "C3236T", - "C3243A", - "T3248C", - "T3251A", - "A3254G", - "C3257T", - "T3263C", - "T3267C", - "A3269G", - "C3272T", - "T3275A", - "G3277A", - "T3296C", - "G3302A", - "A3305T", - "T3308G", - "C3311T", - "G3320A", - "C3321A", - "G3323C", - "A3328T", - "A3329G", - "A3332C", - "C3338G", - "C3339A", - "C3347T", - "C3350T", - "C3351A", - "C3353G", - "A3354C", - "G3356C", - "A3362G", - "A3365G", - "T3371A", - "A3377G", - "G3380A", - "G3381A", - "T3386A", - "A3389G", - "A3390C", - "T3394C", - "C3395G", - "T3396C", - "A3397T", - "T3398G", - "C3401T", - "A3408T", - "T3410G", - "C3413T", - "A3414G", - "A3416G", - "C3417T", - "A3423G", - "A3424C", - "T3425C", - "T3428C", - "G3434C", - "C3437G", - "T3443C", - "C3444T", - "A3449G", - "G3453A", - "A3461G", - "A3464G", - "C3465T", - "T3470C", - "T3477C", - "A3479T", - "C3486A", - "T3491C", - "A3492T", - "T3494A", - "A3503T", - "A3505C", - "T3509C", - "T3518G", - "G3519A", - "C3524T", - "C3527T", - "C3530T", - "G3536T", - "G3539A", - "C3542T", - "A3543C", - "A3545G", - "T3548C", - "C3551A", - "G3554A", - "G3563A", - "G3566C", - "G3569A", - "C3578G", - "C3579A", - "A3581C", - "C3584A", - "G3590C", - "T3593C", - "T3600C", - "C3609T", - "G3610C", - "G3611C", - "T3614C", - "G3617A", - "C3623T", - "C3626T", - "A3627C", - "A3629C", - "G3630A", - "T3632G", - "G3638A", - "T3641C", - "T3647G", - "C3650T", - "G3655C", - "T3656A", - "A3659G", - "G3662T", - "C3665T", - "A3668G", - "C3677T", - "A3680C", - "T3683C", - "T3686C", - "G3692A", - "G3695A", - "A3698G", - "A3701G", - "A3706G", - "T3713C", - "T3716C", - "C3734T", - "C3740T", - "T3749G", - "T3756C", - "C3761T", - "T3770A", - "C3774T", - "A3782C", - "C3788T", - "C3791G", - "A3794C", - "C3797A", - "A3807G", - "A3809G", - "T3812A", - "T3818A", - "C3821T", - "A3828C", - "G3830A", - "C3836T", - "C3845A", - "T3848A", - "A3855G", - "A3857T", - "G3860C", - "C3861A", - "G3863A", - "G3872A", - "T3876G", - "C3879A", - "G3881A", - "G3893T", - "G3897A", - "A3902C", - "C3903T", - "G3905A", - "A3914G", - "G3938A", - "C3941T", - "C3947T", - "A3949G", - "G3951A", - "C3953A", - "T3956C", - "T3965C", - "T3968G", - "C3971T", - "G3974A", - "T3977C", - "C3986G", - "T3987C", - "G3989A", - "C3992A", - "A4002T", - "A4004G", - "T4007C", - "G4012A", - "A4013C", - "C4014T", - "C4016T", - "C4019T", - "C4025G", - "A4028G", - "C4031T", - "A4034T", - "T4043C", - "G4049T", - "G4052C", - "T4070C", - "C4073A", - "A4074G", - "C4075A", - "G4076A", - "A4079T", - "A4082G", - "C4091T", - "T4094C", - "T4097A", - "C4103T", - "C4106T", - "A4108G", - "A4109G", - "A4112C", - "C4121A", - "G4127C", - "C4133T", - "A4136G", - "G4142A", - "T4145C", - "A4151G", - "C4154T", - "C4166T", - "T4169C", - "T4170C", - "A4178T", - "C4181A", - "A4190T", - "A4193G", - "A4199C", - "C4200T", - "C4205A", - "A4208G", - "A4214G", - "G4215A", - "C4216A", - "T4223C", - "T4229A", - "T4232C", - "A4235G", - "G4238C", - "G4241A", - "C4244T", - "C4250T", - "A4256G", - "G4266A", - "G4268A", - "T4274C", - "G4283A", - "G4286C", - "A4289C", - "G4301A", - "A4305G", - "T4310C", - "A4314C", - "T4316A", - "C4319G", - "T4325C", - "C4328T", - "A4335C", - "G4343C", - "G4346C", - "T4349C", - "G4355C", - "C4364A", - "G4379T", - "C4382T", - "T4388C", - "A4394T", - "A4400G", - "T4412C", - "T4413C", - "G4415C", - "G4418C", - "A4421T", - "T4424C", - "T4425A", - "C4430T", - "C4433G", - "T4436C", - "T4439C", - "A4442G", - "G4448C", - "C4451T", - "A4454C", - "C4460T", - "A4461C", - "A4463C", - "C4466T", - "G4469A", - "T4480C", - "G4481T", - "T4484G", - "A4496G", - "T4502C", - "A4503C", - "A4508G", - "A4511G", - "A4514G", - "G4517A", - "C4535G", - "T4542G", - "G4548C", - "A4553C", - "A4556G", - "G4559T", - "C4564T", - "A4565G", - "C4569T", - "G4571A", - "A4575C", - "G4580T", - "T4583C", - "T4595G", - "T4596C", - "G4598A", - "T4601C", - "A4604C", - "G4607A", - "C4613T", - "C4616T", - "C4621T", - "A4622C", - "G4624C", - "T4625G", - "G4634A", - "T4637C", - "C4640T", - "A4643T", - "T4646C", - "G4649A", - "G4655A", - "A4661G", - "T4664C", - "G4679A", - "A4683G", - "A4688C", - "T4694A", - "T4709G", - "T4711A", - "G4718A", - "G4721A", - "T4727C", - "G4734A", - "T4740C", - "G4742C", - "A4754G", - "C4766T", - "T4772A", - "G4775A", - "C4790A", - "G4799T", - "C4808A", - "G4819A", - "C4820T", - "G4826C", - "C4832T", - "G4835A", - "C4838T", - "T4853A", - "A4859G", - "A4862T", - "A4865T", - "C4871G", - "C4872T", - "A4874G", - "A4877G", - "C4880A", - "C4884A", - "T4886G", - "A4889G", - "A4895G", - "T4898C", - "A4901G", - "C4913G", - "T4916C", - "A4919G", - "C4937A", - "T4940C", - "T4943C", - "G4946A", - "C4961T", - "C4964T", - "C4965T", - "A4966G", - "C4974T", - "T4994A", - "T5003C", - "T5006C", - "C5010A", - "G5012A", - "A5014G", - "G5015A", - "C5021T", - "G5022C", - "G5024T", - "G5025C", - "A5026G", - "A5027C", - "A5028C", - "C5032T", - "A5033T", - "G5052A", - "G5054A", - "C5055T", - "C5056T", - "A5083T", - "A5085G", - "C5086A", - "C5089G", - "A5092C", - "C5094G", - "A5095G", - "A5099C", - "G5100C", - "A5102G", - "C5103G", - "T5104C", - "G5106T", - "A5108G", - "C5110A", - "T5117A", - "A5120T", - "A5121G", - "G5125C", - "C5128A", - "T5129A", - "A5130G", - "G5131A", - "A5132G", - "C5134A", - "A5135C", - "C5136T", - "C5137T", - "C5142A", - "A5148T", - "T5149C", - "A5151G", - "T5153A", - "A5155T", - "A5156T", - "G5159C", - "G5160A", - "A5161G", - "A5162C", - "A5164T", - "A5167T", - "A5168T", - "G5169A", - "A5170G", - "A5172T", - "G5173C", - "T5174G", - "A5175G", - "T5176A", - "A5177G", - "T5182C", - "G5183A", - "C5184G", - "T5185C", - "G5186C", - "T5187G", - "C5188A", - "G5190A", - "A5191C", - "G5193A", - "G5194A", - "C5195T", - "C5197T", - "C5202G", - "G5208A", - "T5209C", - "G5210A", - "C5213A", - "C5214T", - "A5215C", - "A5216G", - "G5219A", - "C5228T", - "G5236C", - "C5239T", - "C5241G", - "C5242A", - "T5244G", - "G5247T", - "A5249T", - "T5250C", - "C5255A", - "A5258C", - "T5259A", - "C5267T", - "T5270C", - "T5276C", - "A5279T", - "C5285T", - "T5288C", - "T5293C", - "T5300C", - "T5301A", - "A5303C", - "G5307T", - "A5348G", - "G5351T", - "C5353T", - "A5354G", - "G5355T", - "C5366G", - "C5368T", - "A5371C", - "T5374C", - "C5375G", - "G5376A", - "A5379T", - "A5380C", - "G5381T", - "C5384T", - "T5386C", - "G5387T", - "G5390T", - "T5391G", - "T5392C", - "T5393G", - "C5394G", - "T5395G", - "G5396C", - "G5397A", - "C5398T", - "G5399A", - "G5406A", - "G5408C", - "A5414T", - "C5418A", - "A5420G", - "C5423T", - "G5424A", - "T5426C", - "G5432A", - "A5433C", - "C5435G", - "C5436G", - "A5438G", - "G5447T", - "A5448C", - "A5449G", - "G5453T", - "G5482A", - "A5484T", - "G5485A", - "C5489G", - "C5492T", - "G5495T", - "A5498T", - "A5499G", - "T5501G", - "A5502T", - "G5503C", - "C5504A", - "A5507G", - "G5508T", - "T5509C", - "T5511C", - "T5571A", - "C5572T", - "A5573T", - "G5575A", - "C5581G", - "C5585G", - "A5586C", - "G5587A", - "G5588A", - "G5591A", - "C5593G", - "A5597C", - "T5603C", - "C5606T", - "T5611C", - "G5612A", - "T5615C", - "C5618T", - "C5627A", - "A5630T", - "T5633C", - "G5636A", - "T5657C", - "G5660A", - "T5689A", - "C5693A", - "A5702G", - "C5723A", - "T5726C", - "G5732A", - "A5738G", - "A5750C", - "A5754C", - "A5759G", - "A5762C", - "G5765T", - "T5766C", - "A5774G", - "G5777C", - "G5780A", - "G5786A", - "A5787C", - "G5789C", - "C5792G", - "G5793C", - "A5794T", - "G5801T", - "A5802G", - "T5803A", - "T5804C", - "T5805G", - "C5806T", - "T5810C", - "C5819T", - "C5825T", - "A5828T", - "G5829A", - "A5831C", - "A5834G", - "A5837G", - "A5840G", - "C5841T", - "A5846G", - "C5847A", - "C5849G", - "A5855G", - "T5856C", - "A5858C", - "G5864T", - "C5870T", - "A5873T", - "C5882T", - "A5885G", - "C5894T", - "C5900A", - "A5901C", - "G5905A", - "G5906A", - "G5909A", - "C5915T", - "A5921G", - "C5924G", - "A5930C", - "T5933C", - "G5935T", - "A5936G", - "T5942G", - "C5943T", - "A5947G", - "A5948C", - "C5951T", - "G5957T", - "T5963C", - "G5970A", - "T5972C", - "A5975C", - "G5976A", - "G5977A", - "A5978C", - "G5984A", - "T5993C", - "G6002A", - "C6003T", - "T6008C", - "T6011C", - "T6014G", - "T6015C", - "A6023C", - "G6024A", - "C6025G", - "T6026C", - "G6039T", - "A6048T", - "C6053T", - "G6056A", - "C6059G", - "A6062C", - "G6065A", - "C6079T", - "G6086T", - "A6092G", - "C6095T", - "T6104C", - "T6110C", - "C6116T", - "T6119C", - "A6122T", - "T6124C", - "T6125C", - "A6128C", - "G6131A", - "C6140A", - "G6146A", - "C6149T", - "T6165A", - "T6170C", - "T6174C", - "C6179T", - "T6182C", - "T6197C", - "A6200T", - "C6212T", - "A6218T", - "T6233C", - "T6234C", - "C6242G", - "C6249A", - "G6251A", - "G6254A", - "G6260T", - "A6263G", - "C6278T", - "G6281A", - "A6299C", - "C6305T", - "C6326T", - "G6329A", - "A6336C", - "A6338T", - "C6347A", - "A6350G", - "T6351C", - "T6356C", - "T6362G", - "C6380T", - "A6389G", - "G6395C", - "T6401C", - "T6404C", - "A6407G", - "A6416C", - "G6419A", - "A6424G", - "A6428T", - "C6431T", - "C6434T", - "A6449G", - "G6458A", - "G6459A", - "T6460C", - "T6464C", - "T6470C", - "T6473C", - "A6476G", - "T6477C", - "A6485G", - "A6491G", - "G6494A", - "T6497A", - "T6500A", - "A6509C", - "T6515C", - "T6518C", - "T6522C", - "G6524C", - "A6525T", - "A6526G", - "A6533G", - "G6536A", - "C6539T", - "C6545T", - "G6554A", - "T6557C", - "C6560G", - "A6569G", - "A6573C", - "G6575T", - "G6581C", - "T6590G", - "A6593G", - "A6596T", - "A6599T", - "A6626T", - "G6638A", - "T6641C", - "C6644T", - "G6650A", - "A6659T", - "T6665C", - "G6668A", - "C6677A", - "C6680T", - "A6683T", - "T6687C", - "A6696C", - "A6698G", - "T6699C", - "A6701G", - "C6710A", - "G6713A", - "T6716A", - "G6719T", - "A6723G", - "G6734T", - "C6740T", - "T6749A", - "T6758C", - "C6761T", - "T6764G", - "C6787A", - "T6788C", - "G6791A", - "C6794T", - "T6795C", - "G6796A", - "T6797A", - "G6803A", - "T6809G", - "T6815A", - "G6821C", - "G6836A", - "C6842T", - "T6851G", - "G6854A", - "G6857T", - "A6863T", - "T6869A", - "G6872T", - "T6884A", - "G6887C", - "C6892A", - "G6899A", - "G6905T", - "G6917T", - "T6920C", - "C6926T", - "A6929G", - "T6932A", - "A6935T", - "A6938T", - "T6945C", - "A6947C", - "C6953T", - "T6959G", - "T6965C", - "C6971T", - "A6974G", - "C6977G", - "A6986G", - "C6989A", - "A6992C", - "C6998T", - "C7001T", - "C7004T", - "G7007A", - "T7010C", - "G7013A", - "C7016T", - "G7020A", - "C7022T", - "C7025A", - "C7031A", - "C7034T", - "C7037T", - "A7040G", - "G7049A", - "A7052G", - "G7058A", - "C7059A", - "G7064T", - "C7067T", - "A7073T", - "A7076G", - "T7079C", - "A7085T", - "T7091C", - "T7097C", - "C7100T", - "C7106A", - "C7118A", - "G7124T", - "C7127T", - "A7130G", - "T7131C", - "C7142T", - "C7151T", - "A7154G", - "G7160A", - "C7172G", - "C7187A", - "G7190T", - "C7193A", - "C7196G", - "G7205A", - "C7208G", - "T7217C", - "A7220C", - "G7223T", - "T7226C", - "T7229C", - "T7235C", - "C7238T", - "T7239A", - "C7250A", - "A7253T", - "C7259T", - "T7262C", - "G7265C", - "A7268G", - "C7271T", - "G7286A", - "C7293T", - "T7295G", - "A7298G", - "C7305T", - "A7313C", - "T7319C", - "A7322G", - "T7331C", - "A7335C", - "G7337C", - "A7346G", - "T7347G", - "A7349G", - "C7350T", - "A7351T", - "C7352T", - "T7359G", - "A7362G", - "C7363A", - "A7364G", - "C7365A", - "C7367G", - "A7376G", - "T7378C", - "G7379T", - "A7382C", - "T7387C", - "T7388C", - "C7389G", - "C7390T", - "G7394A", - "G7397T", - "T7400C", - "A7415C", - "T7421C", - "A7424G", - "C7426T", - "A7430G", - "A7433C", - "C7439T", - "C7442T", - "T7448A", - "A7449G", - "T7450C", - "G7451A", - "C7454T", - "A7458G", - "T7460C", - "T7463C", - "C7464T", - "A7470C", - "C7472T", - "G7474A", - "T7475C", - "T7478A", - "A7480C", - "A7481G", - "T7482A", - "G7489A", - "C7490A", - "T7491C", - "A7497C", - "G7502A", - "G7503A", - "C7504A", - "T7508C", - "A7512C", - "C7513A", - "C7540T", - "C7543T", - "C7549A", - "T7550C", - "C7558A", - "A7560C", - "G7561C", - "G7570T", - "A7579C", - "T7585C", - "G7594A", - "A7597T", - "A7598G", - "T7599C", - "C7603G", - "T7606C", - "C7612T", - "T7617A", - "C7618T", - "G7619C", - "T7627C", - "A7630G", - "T7641A", - "C7642T", - "C7645G", - "A7646C", - "G7648C", - "T7657A", - "T7660C", - "C7661T", - "A7667T", - "G7672A", - "G7678A", - "A7684G", - "C7688A", - "C7690G", - "T7693C", - "T7699C", - "G7705A", - "G7708A", - "A7717G", - "C7726G", - "G7727A", - "C7728G", - "G7729T", - "T7735C", - "G7738A", - "G7741C", - "A7744C", - "C7747T", - "G7762A", - "A7763C", - "G7765T", - "G7768A", - "G7769C", - "C7773A", - "A7778G", - "A7779C", - "G7780A", - "A7782C", - "A7783G", - "A7785C", - "T7786C", - "G7788C", - "G7790A", - "G7791T", - "A7792T", - "C7793A", - "G7795A", - "G7800C", - "A7802C", - "G7813T", - "A7814G", - "A7815G", - "C7817A", - "A7835C", - "A7836C", - "C7839A", - "G7840A", - "G7843T", - "C7844G", - "G7846C", - "C7847G", - "C7848T", - "T7852A", - "G7855C", - "G7859A", - "A7861T", - "G7864A", - "A7865C", - "A7866C", - "T7867G", - "G7869C", - "A7872G", - "C7873T", - "G7882A", - "G7883C", - "C7885T", - "C7888T", - "A7897C", - "G7903A", - "A7906G", - "C7918T", - "T7925C", - "G7927C", - "G7939A", - "A7942T", - "T7948G", - "G7957A", - "T7981C", - "C7984T", - "G7996C", - "G7999A", - "A8002G", - "G8008A", - "G8020T", - "C8026A", - "C8032T", - "C8035T", - "C8041G", - "G8042A", - "T8043C", - "T8044G", - "C8045T", - "C8050A", - "C8054T", - "T8056G", - "T8072A", - "A8077G", - "T8080C", - "T8083C", - "C8084T", - "T8098C", - "G8101T", - "A8104C", - "G8107A", - "C8110T", - "G8116T", - "A8125G", - "C8128T", - "A8129C", - "A8130G", - "A8131T", - "G8143A", - "A8146G", - "C8155G", - "C8161T", - "G8163A", - "C8164T", - "T8173C", - "A8179C", - "C8182T", - "T8194C", - "G8197C", - "G8209C", - "T8221A", - "G8224C", - "C8227T", - "C8239T", - "C8248T", - "G8254A", - "T8257C", - "C8267A", - "G8272A", - "C8275A", - "T8278C", - "T8281A", - "G8287A", - "T8293A", - "G8296A", - "T8299C", - "A8305T", - "T8308A", - "A8309C", - "A8311C", - "A8314T", - "C8317A", - "C8326T", - "C8329A", - "A8337C", - "C8338T", - "G8341A", - "T8350C", - "T8353C", - "G8356C", - "T8362C", - "T8368C", - "G8371A", - "C8374T", - "C8377T", - "A8389T", - "G8395T", - "C8398T", - "A8399G", - "A8402G", - "G8404T", - "C8408T", - "C8413T", - "C8416A", - "C8422A", - "C8428T", - "A8431G", - "A8440G", - "A8443G", - "A8446T", - "T8449A", - "A8467G", - "G8468T", - "G8473A", - "T8477C", - "G8479T", - "C8488T", - "T8493A", - "T8494G", - "C8497T", - "G8498A", - "T8500A", - "G8509A", - "C8512T", - "T8518C", - "A8520T", - "C8522T", - "G8524A", - "A8530T", - "G8531T", - "A8533C", - "T8536G", - "C8545T", - "C8548G", - "A8554G", - "A8555C", - "A8557G", - "G8560A", - "A8561C", - "A8563T", - "T8566A", - "G8575A", - "G8578C", - "T8581C", - "G8584A", - "G8587A", - "A8596G", - "C8600A", - "G8601A", - "C8602A", - "G8605C", - "C8614T", - "G8616A", - "C8632T", - "T8635G", - "G8638C", - "T8647C", - "T8662A", - "G8665A", - "C8667A", - "A8673G", - "G8674A", - "C8677T", - "G8683A", - "C8686T", - "C8689T", - "T8695C", - "G8696A", - "T8698A", - "A8701C", - "C8702A", - "T8710C", - "C8713A", - "T8722C", - "C8725A", - "T8732C", - "C8734T", - "T8737A", - "A8741G", - "A8742G", - "C8743T", - "T8744G", - "G8750A", - "C8758G", - "A8762C", - "G8764C", - "T8767C", - "G8768A", - "C8770T", - "A8771C", - "C8776A", - "G8779A", - "C8781A", - "G8797T", - "A8800G", - "C8804G", - "A8806G", - "A8812C", - "C8815A", - "C8818T", - "A8821T", - "T8824C", - "T8833C", - "C8836T", - "T8845C", - "G8848C", - "T8851C", - "T8854C", - "T8860C", - "G8863C", - "C8864T", - "T8866A", - "G8872A", - "A8878T", - "C8880A", - "C8890A", - "A8891T", - "C8893G", - "A8902G", - "T8905C", - "T8915A", - "C8920A", - "A8923G", - "C8929A", - "A8935C", - "G8938A", - "T8944C", - "G8945A", - "G8950T", - "T8956C", - "A8958T", - "T8959A", - "C8968G", - "A8969C", - "A8971C", - "G8977T", - "C8980T", - "T8983G", - "T8986C", - "A8992C", - "A9001C", - "G9002A", - "G9007C", - "A9010C", - "G9013A", - "A9018G", - "C9025T", - "A9028T", - "A9037C", - "C9043G", - "A9049T", - "T9055C", - "G9073T", - "C9076A", - "C9088T", - "C9091T", - "T9095C", - "T9100C", - "C9112A", - "A9113G", - "T9115G", - "T9116G", - "A9118T", - "C9121G", - "C9124G", - "C9129A", - "A9130T", - "T9136A", - "T9139A", - "G9142A", - "A9145T", - "G9147A", - "C9152T", - "G9154A", - "A9160G", - "C9163T", - "G9164A", - "G9166C", - "A9178C", - "A9179C", - "G9181A", - "C9184T", - "A9194G", - "A9198G", - "C9199T", - "G9202C", - "C9204T", - "C9209A", - "G9216A", - "A9226G", - "A9227C", - "A9232C", - "G9233A", - "T9235C", - "C9236A", - "A9237G", - "C9241T", - "A9242C", - "G9244C", - "A9247C", - "A9261G", - "A9276T", - "T9283C", - "C9286T", - "C9295G", - "A9301T", - "G9304A", - "A9307G", - "C9313T", - "A9322T", - "T9341C", - "G9343C", - "G9346A", - "G9347T", - "C9355A", - "A9358G", - "T9370C", - "A9373G", - "A9376G", - "A9382G", - "T9385G", - "A9386G", - "G9388A", - "A9389G", - "A9391G", - "A9392T", - "C9394G", - "T9400A", - "C9404A", - "A9406G", - "A9409G", - "C9416T", - "G9418A", - "G9424C", - "C9427T", - "G9433T", - "T9436C", - "C9439A", - "C9442T", - "T9445C", - "C9451G", - "T9454C", - "C9455A", - "C9457A", - "A9460T", - "C9461T", - "G9463A", - "A9465G", - "T9466C", - "T9469C", - "T9478G", - "C9481T", - "C9487T", - "G9490A", - "C9493T", - "A9496C", - "T9499G", - "A9502G", - "C9507T", - "T9511A", - "G9513A", - "T9517C", - "T9520C", - "A9521T", - "G9524A", - "A9529G", - "A9535G", - "G9538T", - "G9544A", - "T9547C", - "A9556T", - "T9577C", - "A9583T", - "A9589G", - "A9595G", - "C9598T", - "T9604C", - "A9607T", - "T9610C", - "G9613T", - "C9614A", - "C9622T", - "G9625A", - "G9626A", - "G9628A", - "A9629G", - "C9631T", - "T9634C", - "T9637C", - "C9644T", - "A9649G", - "C9652T", - "T9655A", - "C9661A", - "A9665G", - "C9667G", - "C9668G", - "T9673A", - "G9676A", - "A9679T", - "T9682A", - "C9685T", - "G9697C", - "C9699T", - "C9700A", - "T9703A", - "G9707A", - "T9709A", - "A9712G", - "C9718A", - "A9719C", - "C9720T", - "G9724C", - "C9725T", - "T9730A", - "C9739T", - "T9745C", - "C9752T", - "T9757A", - "C9764A", - "G9766A", - "C9767T", - "C9781A", - "G9784C", - "A9785C", - "G9787T", - "T9790C", - "C9791A", - "G9793C", - "C9796T", - "G9803T", - "C9820T", - "A9821C", - "G9824A", - "C9826G", - "G9829A", - "C9832T", - "C9838G", - "C9841G", - "T9848A", - "C9850T", - "G9853T", - "T9856C", - "C9868T", - "C9874T", - "A9890C", - "T9892C", - "T9896C", - "G9901T", - "C9904A", - "T9907C", - "G9910T", - "C9913A", - "C9916T", - "G9919A", - "T9922A", - "A9925G", - "G9926A", - "G9928T", - "C9932A", - "C9934A", - "C9935A", - "G9937C", - "G9940A", - "G9943A", - "G9949C", - "T9955C", - "G9956T", - "C9958T", - "G9974C", - "G9976A", - "A9988C", - "C10000T", - "G10012A", - "C10015A", - "C10032T", - "A10044T", - "A10054C", - "C10057G", - "C10060T", - "A10063G", - "A10066C", - "C10069G", - "A10078C", - "C10082G", - "T10084A", - "A10093C", - "A10096C", - "A10099T", - "C10102T", - "A10109C", - "G10111A", - "C10112A", - "G10114T", - "A10123C", - "G10124C", - "G10132A", - "C10138T", - "C10141T", - "C10147T", - "C10150T", - "C10153T", - "A10159C", - "A10162G", - "A10163T", - "G10165A", - "A10171T", - "C10177G", - "A10178G", - "C10180G", - "A10183G", - "T10204C", - "C10208G", - "C10209A", - "A10211G", - "C10212T", - "T10213C", - "T10214A", - "A10215C", - "A10217C", - "G10219C", - "T10222C", - "C10229A", - "C10234T", - "C10240A", - "C10243T", - "A10249T", - "C10255T", - "G10258A", - "A10270C", - "T10273C", - "A10276C", - "C10282T", - "T10285C", - "A10301T", - "C10312T", - "G10315A", - "G10318A", - "A10330G", - "C10336T", - "C10343G", - "T10344C", - "G10348T", - "T10351C", - "C10354T", - "A10363G", - "C10366T", - "G10372A", - "C10381T", - "T10382G", - "T10386C", - "C10387A", - "C10396T", - "C10405T", - "A10408G", - "G10411C", - "G10413C", - "A10417T", - "C10420A", - "T10426C", - "A10432G", - "G10444T", - "T10456A", - "T10459C", - "C10468T", - "T10471C", - "A10474C", - "G10475A", - "A10479G", - "T10492C", - "A10495T", - "C10496T", - "T10498A", - "C10501A", - "T10507G", - "A10513G", - "C10516T", - "T10519C", - "A10528G", - "C10531A", - "G10534T", - "T10540C", - "C10543T", - "G10545A", - "G10546A", - "G10549A", - "A10550G", - "C10552G", - "T10555C", - "T10558C", - "T10567C", - "G10573A", - "T10576C", - "G10579A", - "A10585T", - "C10586A", - "A10587C", - "T10588C", - "G10597T", - "T10600C", - "A10603C", - "C10615T", - "T10623C", - "C10624T", - "T10625A", - "T10631A", - "T10636C", - "G10639A", - "T10648C", - "C10654T", - "A10657G", - "G10660A", - "C10661T", - "C10672G", - "G10676T", - "A10678C", - "G10682A", - "A10685G", - "C10687T", - "T10690C", - "C10693T", - "A10696G", - "C10699T", - "T10702C", - "A10708C", - "A10711T", - "G10714A", - "A10726G", - "G10732A", - "A10735G", - "T10751C", - "T10758A", - "T10768A", - "C10771T", - "C10777T", - "T10783C", - "T10784A", - "T10786A", - "A10787G", - "C10788T", - "A10789G", - "T10797A", - "G10800A", - "C10801A", - "G10802A", - "C10804A", - "G10805C", - "C10863A", - "A10865T", - "G10866T", - "G10867T", - "C10872T", - "A10873T", - "A10885G", - "A10891G", - "G10892A", - "C10893A", - "T10894C", - "C10897G", - "T10906C", - "G10909A", - "C10912T", - "G10915A", - "G10921A", - "A10927T", - "C10930G", - "C10933T", - "T10936C", - "C10939G", - "G10942A", - "C10945T", - "C10948T", - "A10949T", - "C10954G", - "G10963A", - "G10968C", - "C10969T", - "G10972A", - "T10973G", - "C10978G", - "C10984T", - "C10990A", - "T10993C", - "G10994A", - "G10996A", - "A10999T", - "C11005T", - "T11011G", - "C11015G", - "G11017T", - "A11019G", - "A11026C", - "G11027A", - "C11032G", - "G11035T", - "G11038T", - "C11040T", - "G11044A", - "A11047G", - "G11050A", - "G11053C", - "G11054C", - "C11055T", - "G11056C", - "C11059A", - "A11060G", - "T11065C", - "G11071A", - "C11074A", - "A11077G", - "G11089A", - "G11092A", - "C11095T", - "C11101G", - "A11104G", - "A11107C", - "A11113C", - "T11114A", - "C11122G", - "G11125A", - "T11134C", - "C11143T", - "C11146G", - "G11149C", - "C11155T", - "C11158T", - "G11164C", - "A11167G", - "C11173A", - "A11191G", - "C11200A", - "G11203A", - "A11209C", - "C11215A", - "G11218A", - "T11228A", - "A11230C", - "C11236G", - "C11237T", - "G11239A", - "G11242C", - "G11248T", - "A11251G", - "C11254A", - "A11257G", - "A11258C", - "T11260C", - "A11261G", - "T11263A", - "A11264G", - "C11272A", - "G11276A", - "G11278A", - "T11284A", - "C11286T", - "T11290C", - "G11293A", - "T11298C", - "C11302T", - "G11305A", - "A11312G", - "A11313G", - "A11319G", - "A11320G", - "C11321A", - "A11322G", - "T11323G", - "A11324T", - "T11326C", - "T11333A", - "A11334C", - "G11335A", - "A11348G", - "C11353T", - "T11354A", - "T11355A", - "A11358T", - "T11359G", - "A11362T", - "C11364A", - "C11366A", - "G11369A", - "A11379G", - "C11383T", - "A11389T", - "T11403A", - "T11405A", - "T11406A", - "T11408A", - "A11420T", - "G11424A" - ] - } - }, - "name": "MK088531.1", - "node_attrs": { - "author": { - "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", - "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." - }, - "country": { - "confidence": { - "Colombia": 0.07727737785037744, - "Costa_Rica": 0.0740320725986566, - "Honduras": 0.0764396069950167, - "Mexico": 0.078741870328267 - }, - "entropy": 2.6375762209719746, - "value": "Mexico" - }, - "div": 0.20428167411809814, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2018.7712328767122, - 2018.7712328767122 - ], - "value": 2018.7712328767122 - }, - "region": { - "confidence": { - "?": 0.04844058669338583, - "AUSNZ": 0.1090142826896993, - "LA,C": 0.8425451306169149 - }, - "entropy": 0.5326072614144383, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2018": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2018" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: N13H, I20S, V39M, V48L, G53S, A54V; CP: Y15F, F19Y, A21P, A56T, K67R, R68K, A70P, P71Q, K73Q, E74A, N75T, R76Q, G77A, N79G, G80K, K83N, K84G, N85K, G87A, K92S, P95A, H97P, E100N, G103S, N104T, A108V, V161T, A164S, S201N; E1: S9N, I18V, P28A, I31V, I36V, K37R, V42L, M55L, A59S, S69P, P70K, T71V, T98S, K105R, M109T, L115S, A116T, Q120L, H140Q, T144A, I145V, V154I, N155S, T162V, I177V, I203L, I208T, S209T, S211N, V220I, K225N, A228T, K247R, F253Y, Y262H, T263I, I266V, A298G, T302S, V332I, A342S, A343F, E345D, L346V, A347V, A352L, I354L, R366K, S372T, Y373L, V374L, Y393H; E2: R18K, I20V, T73K, A106E, N132T, T140S, A147T, Q149H, Q152R, N160K, R161K, G162D, S185A, H187Q, T194Q, E201N, T205S, K206A, Q216T, F217Y, D224A, F259Y, A262S, M275I, K290R, Q299H, H305N, A315T, V316T, K324Q, F328Y, F338Y, I377V, I380T, F389L, V394A, M408L, L410V; E3: Q18T, M33I, V36A, K57Q; nsP1: Y94F, E106D, K117A, S124E, T130Q, E131D, S140T, Q146H, M225L, L240I, R256K, R424K, I440V, N444P, I455L, R469K, E474D, H475K, S479P, A484P, I487V, Q488S, E489A, N492E, D495A, V500I, A508V, L513I, A514V, A515P; nsP2: A16S, Q47E, V48A, Q80A, T108V, T122V, H128Y, D129E, K139R, L146Q, T148S, D158E, R170K, K203R, I218M, K225R, V229I, N230V, E247D, R270K, Q302R, R328K, V389I, T405N, I446L, A451Q, T467A, K487R, T495A, D502A, Y503H, K505R, T506D, Y583L, N592S, R596S, H614R, H619R, V626A, T642N, V643I, P644T, R654S, R660K, A661S, G669S, T704A, I733V, A768V; nsP3: T13N, T15E, I20V, S44N, A55S, V79L, E87D, I92V, V96I, N100H, M150T, V156I, S171A, T174A, Y195F, S198T, M218V, I227T, V235I, A272S, Q279H, S311A, S317L, K328R, A331P, E332K, A344P, N346S, Q347R, S348E, E354A, Q355E, A357V, V361E, R367A, I372V, I373T, I374L, E378A, S381T, M384I, L385V, G388S, P389T, T390W, H391L, Q392R, V393*, Q395L, D399E, G402S, P403S, P404H, S405A, S410N, H415Q, L424V, L427Q, D428G, L430I, T436F, K438S, A440M, S441Q, A442E, K450N, L452S, E453G, A456I, R457K, V459I, R467T, N468Q, S480P, H481Q, P483E, S484G, R485*, R489T, S491P, P517S, R519G, A521T, N534K, F553Y; nsP4: L47A, I75V, Q82S, A90T, H101Y, K118R, I141T, L148M, K174R, S176A, V253T, N275S, R284S, I341V, P397Q, V437M, S513T, H550Y, P563S, V576T, I580V, M583T, S590R, S591N, E593A, S594A, S596K, Y597H, A601N, I603V" - }, - "mutations": { - "6k": [ - "N13H", - "I20S", - "V39M", - "V48L", - "G53S", - "A54V" - ], - "CP": [ - "Y15F", - "F19Y", - "A21P", - "A56T", - "K67R", - "R68K", - "A70P", - "P71Q", - "K73Q", - "E74A", - "N75T", - "R76Q", - "G77A", - "N79G", - "G80K", - "K83N", - "K84G", - "N85K", - "G87A", - "K92S", - "P95A", - "H97P", - "E100N", - "G103S", - "N104T", - "A108V", - "V161T", - "A164S", - "S201N" - ], - "E1": [ - "S9N", - "I18V", - "P28A", - "I31V", - "I36V", - "K37R", - "V42L", - "M55L", - "A59S", - "S69P", - "P70K", - "T71V", - "T98S", - "K105R", - "M109T", - "L115S", - "A116T", - "Q120L", - "H140Q", - "T144A", - "I145V", - "V154I", - "N155S", - "T162V", - "I177V", - "I203L", - "I208T", - "S209T", - "S211N", - "V220I", - "K225N", - "A228T", - "K247R", - "F253Y", - "Y262H", - "T263I", - "I266V", - "A298G", - "T302S", - "V332I", - "A342S", - "A343F", - "E345D", - "L346V", - "A347V", - "A352L", - "I354L", - "R366K", - "S372T", - "Y373L", - "V374L", - "Y393H" - ], - "E2": [ - "R18K", - "I20V", - "T73K", - "A106E", - "N132T", - "T140S", - "A147T", - "Q149H", - "Q152R", - "N160K", - "R161K", - "G162D", - "S185A", - "H187Q", - "T194Q", - "E201N", - "T205S", - "K206A", - "Q216T", - "F217Y", - "D224A", - "F259Y", - "A262S", - "M275I", - "K290R", - "Q299H", - "H305N", - "A315T", - "V316T", - "K324Q", - "F328Y", - "F338Y", - "I377V", - "I380T", - "F389L", - "V394A", - "M408L", - "L410V" - ], - "E3": [ - "Q18T", - "M33I", - "V36A", - "K57Q" - ], - "nsP1": [ - "Y94F", - "E106D", - "K117A", - "S124E", - "T130Q", - "E131D", - "S140T", - "Q146H", - "M225L", - "L240I", - "R256K", - "R424K", - "I440V", - "N444P", - "I455L", - "R469K", - "E474D", - "H475K", - "S479P", - "A484P", - "I487V", - "Q488S", - "E489A", - "N492E", - "D495A", - "V500I", - "A508V", - "L513I", - "A514V", - "A515P" - ], - "nsP2": [ - "A16S", - "Q47E", - "V48A", - "Q80A", - "T108V", - "T122V", - "H128Y", - "D129E", - "K139R", - "L146Q", - "T148S", - "D158E", - "R170K", - "K203R", - "I218M", - "K225R", - "V229I", - "N230V", - "E247D", - "R270K", - "Q302R", - "R328K", - "V389I", - "T405N", - "I446L", - "A451Q", - "T467A", - "K487R", - "T495A", - "D502A", - "Y503H", - "K505R", - "T506D", - "Y583L", - "N592S", - "R596S", - "H614R", - "H619R", - "V626A", - "T642N", - "V643I", - "P644T", - "R654S", - "R660K", - "A661S", - "G669S", - "T704A", - "I733V", - "A768V" - ], - "nsP3": [ - "T13N", - "T15E", - "I20V", - "S44N", - "A55S", - "V79L", - "E87D", - "I92V", - "V96I", - "N100H", - "M150T", - "V156I", - "S171A", - "T174A", - "Y195F", - "S198T", - "M218V", - "I227T", - "V235I", - "A272S", - "Q279H", - "S311A", - "S317L", - "K328R", - "A331P", - "E332K", - "A344P", - "N346S", - "Q347R", - "S348E", - "E354A", - "Q355E", - "A357V", - "V361E", - "R367A", - "I372V", - "I373T", - "I374L", - "E378A", - "S381T", - "M384I", - "L385V", - "G388S", - "P389T", - "T390W", - "H391L", - "Q392R", - "V393*", - "Q395L", - "D399E", - "G402S", - "P403S", - "P404H", - "S405A", - "S410N", - "H415Q", - "L424V", - "L427Q", - "D428G", - "L430I", - "T436F", - "K438S", - "A440M", - "S441Q", - "A442E", - "K450N", - "L452S", - "E453G", - "A456I", - "R457K", - "V459I", - "R467T", - "N468Q", - "S480P", - "H481Q", - "P483E", - "S484G", - "R485*", - "R489T", - "S491P", - "P517S", - "R519G", - "A521T", - "N534K", - "F553Y" - ], - "nsP4": [ - "L47A", - "I75V", - "Q82S", - "A90T", - "H101Y", - "K118R", - "I141T", - "L148M", - "K174R", - "S176A", - "V253T", - "N275S", - "R284S", - "I341V", - "P397Q", - "V437M", - "S513T", - "H550Y", - "P563S", - "V576T", - "I580V", - "M583T", - "S590R", - "S591N", - "E593A", - "S594A", - "S596K", - "Y597H", - "A601N", - "I603V" - ], - "nuc": [ - "A27G", - "C28A", - "A30T", - "T32A", - "A43T", - "A44T", - "C65T", - "G113C", - "T143A", - "T146C", - "T161C", - "C164T", - "G182A", - "A188T", - "C228T", - "C251T", - "T263C", - "G269A", - "T272C", - "T278C", - "T281C", - "C284T", - "T302C", - "G323A", - "A325T", - "G329A", - "T338C", - "A350G", - "A362C", - "A377G", - "G386A", - "A393G", - "A394C", - "G395A", - "A414G", - "G415A", - "C416G", - "T422C", - "C425T", - "A432C", - "C433A", - "T434G", - "G437C", - "C447T", - "C449G", - "G461A", - "T462A", - "A482C", - "C485G", - "T491C", - "T500C", - "A503C", - "T512G", - "G521C", - "A524C", - "T527C", - "T533C", - "C536T", - "C542A", - "C545T", - "A551T", - "C587G", - "T606C", - "T611C", - "A617G", - "T620C", - "T632C", - "C635A", - "C647T", - "C653G", - "T657C", - "G662A", - "T665C", - "C677T", - "C686T", - "C689A", - "C702A", - "A707C", - "T710C", - "G716A", - "A717C", - "T728A", - "C752G", - "C762A", - "C767T", - "T770C", - "C776T", - "T779C", - "C785T", - "G794A", - "G800A", - "G809A", - "G811A", - "G812A", - "C822T", - "G827A", - "A833G", - "T840C", - "T878G", - "T884G", - "A909C", - "A911G", - "A914C", - "A947G", - "G962T", - "A992G", - "G995A", - "T1007C", - "T1052G", - "G1058A", - "T1073C", - "C1080T", - "A1085T", - "G1109A", - "T1116C", - "A1142T", - "C1151T", - "C1160A", - "A1163G", - "A1166G", - "C1172T", - "T1175C", - "C1178T", - "T1190C", - "T1194C", - "C1199A", - "A1235G", - "A1271G", - "C1272T", - "A1274G", - "T1287C", - "G1298C", - "C1304T", - "T1310A", - "G1315A", - "G1319A", - "A1328T", - "T1340C", - "A1349T", - "A1358G", - "A1362G", - "G1373T", - "A1374C", - "A1375C", - "T1382C", - "T1391C", - "C1394T", - "G1397A", - "A1407C", - "C1412T", - "C1418T", - "A1439G", - "A1445G", - "C1448A", - "G1450A", - "A1454G", - "G1466T", - "C1467A", - "C1469A", - "G1472A", - "T1479C", - "G1494C", - "C1496T", - "C1502T", - "A1503G", - "A1505C", - "C1506T", - "A1507C", - "A1510C", - "T1514G", - "G1517A", - "A1518G", - "C1520A", - "C1526A", - "A1528C", - "T1529A", - "G1532A", - "G1542A", - "G1559A", - "C1567T", - "A1568C", - "A1574G", - "A1577C", - "T1581A", - "G1583C", - "C1585T", - "G1587C", - "T1592C", - "T1595G", - "C1604T", - "T1619C", - "T1626C", - "T1632C", - "T1643A", - "G1646C", - "A1664T", - "T1667C", - "G1670A", - "T1674C", - "G1676A", - "C1688T", - "T1694C", - "G1695T", - "C1700T", - "G1703A", - "A1724T", - "T1730G", - "T1733G", - "A1736T", - "T1742C", - "A1745C", - "T1754C", - "A1763T", - "T1766C", - "T1772A", - "C1781A", - "T1784G", - "C1788G", - "T1792C", - "A1805T", - "C1808T", - "T1811A", - "C1814T", - "A1817G", - "G1823A", - "T1826C", - "C1841T", - "A1850C", - "A1856G", - "A1877G", - "A1880C", - "C1887G", - "A1888C", - "T1895C", - "C1916T", - "T1922C", - "A1937G", - "T1964C", - "A1971G", - "C1972T", - "A1973T", - "T1976C", - "G1985C", - "A1994C", - "T2006C", - "A2013G", - "C2014T", - "G2021A", - "C2024T", - "C2031T", - "C2036A", - "C2039A", - "T2051C", - "C2057T", - "A2065G", - "A2066G", - "A2081G", - "T2086A", - "C2090G", - "A2091T", - "G2096T", - "G2102C", - "C2115T", - "G2117A", - "G2120A", - "T2123A", - "C2129G", - "C2132T", - "T2135C", - "C2147T", - "C2154T", - "G2158A", - "A2162C", - "C2163A", - "T2177C", - "A2183G", - "A2186G", - "A2189G", - "G2198T", - "T2204C", - "T2228A", - "T2237A", - "A2246T", - "A2257G", - "G2270C", - "C2276A", - "A2282G", - "A2294T", - "A2297G", - "A2300C", - "A2303G", - "A2304C", - "G2306C", - "C2312G", - "A2322C", - "A2323G", - "G2327C", - "G2334A", - "C2336A", - "A2337G", - "A2338T", - "T2339G", - "C2342A", - "A2345C", - "T2348C", - "G2351T", - "C2354T", - "T2364C", - "G2366A", - "C2375T", - "A2378G", - "G2390C", - "C2393A", - "C2405T", - "C2435T", - "A2447C", - "C2450A", - "A2456T", - "G2458A", - "G2483A", - "T2486C", - "A2489G", - "A2492G", - "G2522T", - "A2554G", - "C2558G", - "G2597C", - "T2600A", - "G2603C", - "C2615G", - "C2624T", - "A2630G", - "G2632A", - "A2637C", - "C2648T", - "G2651T", - "T2678C", - "C2690A", - "A2693G", - "A2696T", - "G2699A", - "G2702A", - "C2705T", - "T2708C", - "C2711T", - "T2714A", - "C2717G", - "T2723C", - "A2729G", - "G2732A", - "C2765T", - "A2774C", - "T2786A", - "T2792C", - "A2795G", - "C2799T", - "G2807A", - "A2810G", - "C2813G", - "G2814A", - "T2825C", - "G2837C", - "C2850T", - "C2855T", - "A2858C", - "C2863A", - "T2873C", - "G2876C", - "G2888C", - "C2891T", - "C2904A", - "C2922T", - "A2924G", - "C2930A", - "A2942T", - "G2951C", - "T2963C", - "T2966C", - "C2975T", - "C2981T", - "G2984C", - "A2985C", - "A2987C", - "G3000C", - "C3001A", - "C3014T", - "C3017T", - "C3029T", - "G3041C", - "C3044T", - "A3048G", - "C3050G", - "C3053T", - "G3071T", - "T3080C", - "C3086T", - "T3092C", - "A3109G", - "A3122T", - "C3131G", - "A3132G", - "A3134G", - "A3140G", - "T3149G", - "G3152T", - "A3154C", - "T3155C", - "T3156C", - "C3161T", - "A3163G", - "A3164G", - "A3165G", - "C3166A", - "G3167T", - "A3182G", - "G3188A", - "T3195C", - "G3197T", - "C3209T", - "G3212C", - "G3233A", - "T3242G", - "A3245G", - "A3260T", - "T3263A", - "A3269G", - "C3272G", - "T3275A", - "T3281C", - "T3284C", - "C3299A", - "G3302T", - "T3308G", - "C3311T", - "A3332G", - "C3347T", - "C3353A", - "A3354C", - "G3356T", - "G3368T", - "C3383G", - "T3396C", - "A3397T", - "T3398G", - "T3410C", - "C3413G", - "A3416T", - "C3422T", - "A3424G", - "T3428C", - "T3431C", - "C3435A", - "A3440C", - "T3443C", - "A3446C", - "A3449G", - "T3452G", - "G3455T", - "A3459C", - "A3461C", - "A3479G", - "C3485A", - "A3490G", - "T3494A", - "A3505G", - "T3509C", - "T3518A", - "A3521G", - "T3526C", - "C3527T", - "C3530T", - "A3545G", - "T3548C", - "C3551T", - "G3557C", - "C3560T", - "G3563A", - "G3569A", - "C3574A", - "G3576A", - "C3579A", - "C3584G", - "G3590T", - "A3608G", - "C3609A", - "G3611C", - "G3617A", - "T3620C", - "G3628A", - "G3630T", - "T3642C", - "A3653G", - "G3654A", - "T3656C", - "A3659G", - "C3671T", - "C3677T", - "A3680G", - "T3686G", - "G3692T", - "A3701T", - "A3707G", - "A3731G", - "C3737T", - "C3740G", - "T3743A", - "T3749C", - "T3756C", - "A3759G", - "C3761A", - "T3770G", - "G3776A", - "C3788T", - "C3791T", - "C3800T", - "T3812C", - "C3836T", - "C3842T", - "C3845T", - "A3846G", - "T3848G", - "T3851A", - "A3854G", - "G3860A", - "G3863A", - "C3869T", - "C3878T", - "C3887T", - "A3890G", - "G3893T", - "G3923A", - "A3929C", - "T3935A", - "C3941T", - "T3944C", - "C3947G", - "C3952T", - "C3953T", - "T3956C", - "G3974A", - "C3975T", - "T3977G", - "G3989A", - "C3995T", - "T4001C", - "T4007C", - "C4010A", - "A4011C", - "C4014T", - "C4016G", - "C4025A", - "A4034T", - "C4037T", - "A4040C", - "T4043C", - "A4055G", - "G4058C", - "C4067T", - "C4069A", - "C4073A", - "A4074G", - "C4075A", - "A4082G", - "G4085C", - "A4089G", - "T4097G", - "A4112G", - "A4124T", - "G4130C", - "C4133T", - "T4139C", - "G4142T", - "T4145C", - "G4148A", - "G4162A", - "C4166T", - "T4170C", - "A4172G", - "A4184G", - "G4187C", - "G4194T", - "G4196C", - "C4205T", - "T4211G", - "A4214G", - "A4220G", - "T4223C", - "G4241A", - "G4266C", - "T4274G", - "C4277T", - "G4292C", - "C4304G", - "A4305G", - "T4316C", - "G4317A", - "T4325C", - "C4328T", - "A4329C", - "A4340T", - "T4349C", - "C4361T", - "C4364A", - "G4379T", - "T4388C", - "A4394C", - "A4400G", - "T4404C", - "C4409T", - "T4412C", - "T4436A", - "T4439C", - "C4451T", - "A4478G", - "T4480C", - "C4487G", - "A4496T", - "G4497A", - "G4499A", - "A4511G", - "A4514C", - "G4517C", - "G4520A", - "A4532C", - "T4542G", - "T4544G", - "A4551G", - "G4559A", - "T4574C", - "G4577A", - "T4595C", - "T4596C", - "T4601A", - "A4605C", - "G4607C", - "C4613T", - "A4615T", - "A4622G", - "G4624C", - "T4625C", - "T4628C", - "G4634A", - "T4637C", - "A4643G", - "C4658A", - "A4661G", - "G4676A", - "T4682C", - "A4683G", - "A4688C", - "C4700A", - "T4709G", - "T4711C", - "A4715T", - "G4718C", - "G4721A", - "T4727C", - "A4733G", - "G4734A", - "C4748T", - "C4749T", - "A4781G", - "C4787T", - "C4790T", - "A4793G", - "G4796A", - "G4799T", - "A4805G", - "C4824T", - "T4829G", - "G4845T", - "T4853A", - "A4856T", - "G4868C", - "C4869A", - "C4871G", - "A4874T", - "A4877G", - "C4913G", - "A4919T", - "T4920C", - "G4925C", - "A4934G", - "T4940A", - "C4955T", - "T4962G", - "C4964T", - "T4970C", - "G4976C", - "T4980C", - "C4981T", - "T4982C", - "C5000T", - "T5003C", - "G5012C", - "A5014G", - "G5022C", - "G5025A", - "G5061C", - "A5063G", - "A5068G", - "C5070A", - "A5071G", - "T5073G", - "C5074A", - "C5075G", - "A5087G", - "A5092C", - "A5093G", - "C5094G", - "C5101T", - "T5113A", - "A5130G", - "G5131C", - "A5132T", - "T5138C", - "G5144T", - "A5145G", - "T5149C", - "A5151C", - "A5164C", - "G5173C", - "T5180C", - "G5183A", - "C5184G", - "A5189G", - "G5193A", - "C5196A", - "A5199T", - "C5200G", - "A5203T", - "C5204T", - "A5206G", - "G5208T", - "T5209A", - "A5215T", - "C5228A", - "G5235T", - "G5236C", - "C5238T", - "C5242A", - "T5244G", - "A5249T", - "A5258T", - "T5259A", - "C5260A", - "T5270C", - "T5276A", - "C5282T", - "T5291C", - "G5294C", - "T5301G", - "C5306G", - "T5311A", - "T5312G", - "A5314G", - "C5318A", - "C5319A", - "G5321A", - "A5337T", - "C5338T", - "C5339T", - "A5344G", - "G5345T", - "G5349A", - "C5350T", - "T5352C", - "C5353A", - "A5354G", - "C5356A", - "G5381T", - "T5386C", - "A5389G", - "G5390A", - "G5397A", - "C5398T", - "G5399A", - "G5401A", - "T5405C", - "G5406A", - "G5408A", - "A5420C", - "C5429T", - "G5431C", - "G5432C", - "A5433C", - "C5435A", - "T5469C", - "T5474G", - "A5477C", - "C5478G", - "C5479A", - "A5481G", - "A5484T", - "G5485A", - "C5492T", - "G5497C", - "A5502C", - "G5503C", - "A5507T", - "C5576A", - "T5579G", - "C5580T", - "A5586G", - "G5591C", - "G5592A", - "C5594T", - "A5597C", - "T5603C", - "C5606T", - "A5624T", - "C5627A", - "T5633A", - "G5639T", - "G5660A", - "A5672T", - "T5689A", - "C5693T", - "A5747G", - "G5756A", - "A5768G", - "T5781C", - "G5786A", - "A5787C", - "C5792A", - "C5841G", - "T5842C", - "A5843T", - "C5844T", - "C5870G", - "A5876G", - "C5900T", - "G5903A", - "G5906A", - "G5912A", - "C5915T", - "C5924A", - "A5925G", - "A5927G", - "A5930T", - "T5933C", - "G5945C", - "C5946A", - "A5947G", - "A5948C", - "C5951A", - "A5954C", - "G5957A", - "T5964C", - "G5970A", - "G5984T", - "G5987A", - "C5990T", - "T5993C", - "C5996T", - "C5999A", - "G6002A", - "C6003T", - "T6011C", - "T6014C", - "T6020C", - "T6026A", - "G6032C", - "T6044C", - "C6053T", - "A6054C", - "A6055G", - "C6059G", - "C6071T", - "C6074T", - "A6089G", - "T6098C", - "G6101T", - "T6104A", - "T6124C", - "T6125A", - "C6144A", - "G6155A", - "C6158T", - "T6164C", - "T6170C", - "A6176G", - "C6185A", - "G6203A", - "C6204T", - "C6209T", - "A6223G", - "T6228G", - "A6239G", - "T6248C", - "G6251C", - "G6254A", - "A6257G", - "A6263T", - "A6266T", - "G6269T", - "T6272A", - "G6281T", - "C6290T", - "G6329A", - "A6332G", - "C6347A", - "A6350G", - "T6351C", - "T6356C", - "A6389G", - "T6392C", - "T6401C", - "C6437T", - "A6452G", - "G6459A", - "T6460C", - "A6479G", - "A6485T", - "T6497C", - "T6518C", - "T6522C", - "G6524T", - "A6526G", - "A6533T", - "A6542C", - "G6554C", - "C6578T", - "A6584G", - "A6596T", - "T6608C", - "A6614G", - "G6617A", - "C6620T", - "G6623A", - "A6626G", - "G6632C", - "T6641A", - "C6651T", - "A6653G", - "G6662C", - "A6674G", - "C6680T", - "G6686A", - "T6692G", - "C6722T", - "A6723G", - "A6731C", - "C6755T", - "T6758C", - "C6761T", - "T6764C", - "T6767C", - "C6773G", - "T6800G", - "A6806G", - "T6815C", - "G6818C", - "A6830G", - "C6842T", - "T6851A", - "T6878C", - "C6879T", - "A6881G", - "G6887A", - "C6892A", - "A6893G", - "G6896A", - "C6897T", - "T6900C", - "G6902C", - "C6926T", - "T6932A", - "T6945C", - "C6953A", - "A6956G", - "A6974G", - "C6977A", - "A6986G", - "A6992C", - "C6998T", - "G7011A", - "C7016T", - "C7025T", - "C7037A", - "A7040T", - "G7058A", - "G7061C", - "C7067T", - "A7076C", - "T7091A", - "A7094C", - "T7103C", - "G7109A", - "C7118T", - "A7133G", - "C7148T", - "A7154G", - "A7169G", - "C7172A", - "G7199A", - "A7202G", - "C7208G", - "T7211C", - "T7226C", - "T7239A", - "C7241G", - "G7244A", - "A7253G", - "G7265A", - "A7268T", - "C7271T", - "C7274T", - "A7277G", - "A7280G", - "G7283A", - "G7292A", - "T7295C", - "G7307A", - "A7313C", - "A7322G", - "T7325C", - "T7331C", - "C7334T", - "A7335C", - "G7337T", - "A7338C", - "A7340C", - "A7346T", - "A7349G", - "C7350T", - "A7361G", - "A7364T", - "A7376C", - "A7382C", - "T7385A", - "C7389T", - "A7391T", - "C7395T", - "A7406G", - "A7409G", - "A7412G", - "A7416C", - "A7424G", - "G7428A", - "T7429C", - "T7436G", - "A7440G", - "C7442G", - "A7445T", - "T7448A", - "T7450C", - "G7451A", - "C7464T", - "A7466G", - "T7469C", - "C7472G", - "G7474A", - "A7480C", - "T7482G", - "A7484G", - "C7487T", - "G7489A", - "C7490A", - "T7491C", - "G7496A", - "G7503A", - "C7504A", - "A7509G", - "A7511G", - "T7538C", - "C7540T", - "T7550C", - "C7558A", - "A7560C", - "G7561C", - "C7567T", - "G7570A", - "G7594A", - "C7603T", - "A7605T", - "T7617A", - "G7622C", - "C7628A", - "A7636G", - "C7645T", - "G7666T", - "G7672A", - "G7675A", - "A7684G", - "C7690T", - "T7699G", - "C7711T", - "A7717G", - "C7726T", - "G7727A", - "T7735A", - "C7747T", - "A7756G", - "A7760C", - "A7761G", - "G7764A", - "G7769C", - "C7771A", - "C7773A", - "A7777G", - "A7778C", - "A7782C", - "A7785C", - "G7788A", - "G7791C", - "A7796G", - "A7797G", - "G7799A", - "G7800A", - "G7804A", - "G7810T", - "A7811G", - "A7812G", - "G7813A", - "C7816A", - "G7821C", - "A7836G", - "G7837T", - "G7840T", - "C7844G", - "G7846C", - "T7849A", - "A7851C", - "T7852C", - "G7859A", - "A7861C", - "G7868A", - "A7872C", - "C7884T", - "C7885T", - "A7897T", - "G7909A", - "C7912G", - "G7939A", - "T7951C", - "T7969C", - "C7975A", - "C7978T", - "G7987A", - "G7996A", - "T8000C", - "A8006C", - "G8011C", - "G8029A", - "G8042A", - "T8043C", - "T8044C", - "G8051T", - "T8083C", - "G8101C", - "A8104T", - "G8107A", - "T8122C", - "A8125C", - "C8128T", - "G8163A", - "C8164T", - "T8173C", - "A8179C", - "C8182G", - "T8194C", - "T8221G", - "C8227G", - "A8245C", - "G8254C", - "A8266G", - "G8269T", - "G8272C", - "C8275G", - "T8278C", - "G8284A", - "T8299C", - "A8302G", - "C8326A", - "C8338T", - "G8341A", - "T8353C", - "G8356A", - "T8362C", - "T8365C", - "G8371A", - "C8377T", - "A8383G", - "G8395T", - "C8407T", - "C8438A", - "A8439C", - "A8443G", - "A8464G", - "A8467C", - "C8482A", - "G8485A", - "C8488T", - "C8491T", - "T8493C", - "T8494C", - "C8537T", - "A8555C", - "A8557G", - "T8566C", - "G8572A", - "T8581C", - "T8590C", - "G8593A", - "A8596T", - "G8599A", - "G8616A", - "A8621G", - "A8624C", - "T8629C", - "G8638T", - "C8644T", - "T8647C", - "G8683A", - "T8695C", - "T8698C", - "A8701G", - "T8704A", - "T8722C", - "C8725T", - "T8737C", - "G8749A", - "T8767C", - "G8779C", - "C8781A", - "C8782G", - "T8785C", - "A8794T", - "C8798T", - "C8815G", - "C8827G", - "T8845C", - "G8848T", - "T8854G", - "T8860C", - "G8863C", - "A8870C", - "G8872C", - "C8880A", - "G8884A", - "C8893T", - "A8902G", - "A8911G", - "C8926T", - "A8953G", - "A8958C", - "T8959A", - "A8965G", - "A8971G", - "C8982G", - "T8986C", - "C8989T", - "A9001C", - "G9002A", - "A9010T", - "A9018G", - "A9019C", - "C9025T", - "T9031C", - "A9037C", - "C9043G", - "G9045A", - "A9046G", - "G9048A", - "A9049C", - "C9067T", - "C9070G", - "G9073C", - "C9076T", - "T9094A", - "T9095C", - "T9100C", - "C9112G", - "T9116G", - "C9124G", - "T9139A", - "A9143C", - "C9144A", - "C9148T", - "A9160G", - "G9164A", - "G9166C", - "C9169T", - "A9176T", - "A9179G", - "A9180C", - "G9181A", - "C9187A", - "C9209A", - "A9210C", - "G9211C", - "T9213A", - "A9234C", - "A9242C", - "A9247T", - "A9253T", - "C9254T", - "G9256A", - "A9268G", - "G9274A", - "T9277C", - "G9292T", - "C9295G", - "A9298G", - "A9301G", - "C9313A", - "A9316G", - "A9325G", - "T9339A", - "T9341C", - "G9343C", - "G9347T", - "A9349C", - "A9358G", - "C9361T", - "A9382G", - "G9388A", - "C9394T", - "T9400C", - "C9403T", - "A9409T", - "G9412T", - "T9415C", - "C9416T", - "C9422T", - "T9430A", - "A9432G", - "T9436C", - "C9439G", - "T9445C", - "A9460C", - "C9476A", - "A9496T", - "T9499A", - "G9506A", - "G9509A", - "T9510C", - "G9514A", - "T9517C", - "C9523A", - "C9526G", - "A9532G", - "A9533C", - "T9546A", - "T9547C", - "A9556C", - "C9559T", - "G9568T", - "A9571G", - "T9576A", - "C9598A", - "A9601C", - "T9604C", - "T9640C", - "T9655C", - "C9664G", - "G9670T", - "T9673A", - "A9679G", - "A9692G", - "T9694G", - "T9702C", - "C9706A", - "T9709A", - "T9728C", - "T9730C", - "C9739G", - "T9744C", - "T9745A", - "G9748C", - "C9752T", - "A9754G", - "T9760G", - "C9778T", - "C9781T", - "A9785T", - "C9791G", - "C9796T", - "G9805C", - "C9818A", - "C9820G", - "C9832A", - "C9841A", - "C9850A", - "G9853A", - "A9869C", - "T9891G", - "T9896C", - "G9901C", - "C9904T", - "C9916G", - "T9917C", - "G9919T", - "A9925G", - "C9934T", - "C9935T", - "G9937A", - "G9947A", - "T9955C", - "G9974C", - "G9976A", - "C9979A", - "G9989A", - "C9993T", - "G10006A", - "G10026A", - "C10027T", - "A10030G", - "A10036G", - "A10052G", - "C10069G", - "C10079T", - "A10081G", - "C10082G", - "A10091G", - "A10093C", - "A10096T", - "A10099G", - "G10105A", - "A10106G", - "C10108A", - "A10110G", - "G10114A", - "C10120T", - "G10124C", - "T10130C", - "G10132A", - "A10144G", - "A10163C", - "G10165T", - "G10175T", - "C10180T", - "C10189T", - "T10204C", - "T10205C", - "C10208A", - "C10209A", - "A10210G", - "A10211G", - "C10212T", - "T10213G", - "C10216T", - "T10222C", - "A10237G", - "A10246C", - "C10261T", - "T10279C", - "T10285C", - "C10291T", - "A10292T", - "G10297A", - "C10303T", - "C10312T", - "A10314G", - "G10315A", - "T10326C", - "C10343T", - "T10344C", - "T10345C", - "G10346A", - "G10348A", - "A10359T", - "A10363C", - "C10366T", - "C10393T", - "C10399G", - "C10405A", - "A10408T", - "C10420G", - "A10423G", - "A10430G", - "A10433G", - "C10435A", - "T10441C", - "G10460A", - "A10464G", - "T10471C", - "A10483G", - "A10484G", - "C10485T", - "T10492C", - "A10504T", - "T10507C", - "A10513C", - "C10516A", - "C10522T", - "C10525G", - "A10529G", - "C10531G", - "T10540C", - "G10546A", - "T10555C", - "T10564C", - "T10567C", - "T10570G", - "G10573A", - "A10582T", - "A10585G", - "A10594G", - "C10606T", - "A10607C", - "C10609T", - "T10623C", - "T10625A", - "C10630T", - "T10631A", - "C10632A", - "A10633C", - "C10651G", - "C10654T", - "A10657G", - "G10658A", - "G10660A", - "G10666A", - "A10675C", - "A10681C", - "G10682A", - "G10684A", - "A10711T", - "A10726G", - "A10740G", - "G10747T", - "A10756G", - "T10758A", - "C10765A", - "C10771T", - "T10784C", - "C10788T", - "C10792T", - "A10796G", - "T10798G", - "C10799A", - "C10801A", - "C10804T", - "A10807G", - "T10810C", - "T10816C", - "T10832C", - "C10846A", - "T10856C", - "C10886T", - "C10893G", - "C10897T", - "A10900G", - "A10904T", - "C10907T", - "C10912T", - "T10924C", - "G10951T", - "C10969T", - "G10972A", - "G10981A", - "C10990A", - "G10994A", - "G10996T", - "T11008C", - "T11011A", - "G11024T", - "G11027T", - "C11028T", - "A11029C", - "C11032A", - "G11035T", - "C11036G", - "C11040T", - "G11044A", - "G11053A", - "G11054T", - "C11055T", - "A11060C", - "A11062G", - "C11068T", - "G11071A", - "A11077C", - "C11083A", - "G11097A", - "G11098A", - "T11114A", - "A11118T", - "T11119A", - "G11120C", - "G11125A", - "T11137C", - "C11146G", - "G11149T", - "T11161C", - "G11164A", - "C11170T", - "G11176A", - "T11177C", - "C11200G", - "G11206C", - "A11209T", - "A11212G", - "C11236A", - "G11239C", - "T11273C", - "A11275T", - "G11281A", - "T11284A", - "G11293T", - "A11347G", - "A11360G", - "G11361A", - "T11365C", - "C11366G", - "C11383T", - "T11387A", - "C11412T", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P6S, Y8F, M13A, N47S, A74V, T75A, G79V, Q86P, A87T, T93N, N102K, V108T, M131L, D160E, E194D; E1: A11V, V31I, T32I, V36I, S59F, Y72N, V103I, T109M, T116A, I154V, S155N, V159I, T208I, I220V, A226T, R247K, I263V, S275F, G298S, V307T, S310T, I332V, F343L, D345E, L352M, N360S, T372K, L373V, I430V; E2: K37R, V45I, L47I, S57P, L61V, G63S, T65V, D69N, M70L, H71Y, E75V, I77V, K160Q, T177S, Q187R, A192S, I207V, T216S, A224S, D249E, I276V, S282F, H299Q, Q324H, L369F, V382I, A394V, R407Q, V414F; E3: K26A, A32M, I33M, A36K, V38I; nsP1: I81V, K85R, E111D, L162I, R171*, V239I, D353E, E400D, E403D, L455P, S458N, E477I, L481I, A489T, K501R, V508I; nsP2: A48V, S54A, V108I, H109N, S126T, E129D, K138R, R139K, I217V, M218I, K292R, R302Q, K335R, K350R, I389V, P404A, P439T, R458K, K463R, R487K, V501I, A502V, H503Q, V515A, R543K, V563A, S592G, S596C, R614H, T615S, H617Q, K630R, M641L, T647N, S669H, A704T, L752T, V757I, R788H; nsP3: K26R, K40R, E80D, D87E, S103T, T198V, A228V, H312Q, Y323H, K332Q, P344Q, S346N, T349E, T352N, P353S, A354V, V357L, L358I, D362I, A363P, R365V, T368A, P369S, P371I, V372D, A378T, D380E, I382M, V385T, S388T, T389M, W390L, L391P, *393S, H394C, V400I, H404Q, V406I, F407L, N410D, I430V, S437N, M440L, N450Y, S451C, T467I, T478K, P479T, P480S, Q481*, A482V, *485Q, A486T, T490A, R515T, A516V, V533R, R535G, D554E; nsP4: V21A, I34N, E43I, A47S, R78K, I80L, S82G, T90S, A113V, S116N, V127M, N243C, S284R, C365S, M437V, N456Q, E499I, Y550Q, T554A, F562H, R590Q, N591S, A593P" - }, - "mutations": { - "CP": [ - "P6S", - "Y8F", - "M13A", - "N47S", - "A74V", - "T75A", - "G79V", - "Q86P", - "A87T", - "T93N", - "N102K", - "V108T", - "M131L", - "D160E", - "E194D" - ], - "E1": [ - "A11V", - "V31I", - "T32I", - "V36I", - "S59F", - "Y72N", - "V103I", - "T109M", - "T116A", - "I154V", - "S155N", - "V159I", - "T208I", - "I220V", - "A226T", - "R247K", - "I263V", - "S275F", - "G298S", - "V307T", - "S310T", - "I332V", - "F343L", - "D345E", - "L352M", - "N360S", - "T372K", - "L373V", - "I430V" - ], - "E2": [ - "K37R", - "V45I", - "L47I", - "S57P", - "L61V", - "G63S", - "T65V", - "D69N", - "M70L", - "H71Y", - "E75V", - "I77V", - "K160Q", - "T177S", - "Q187R", - "A192S", - "I207V", - "T216S", - "A224S", - "D249E", - "I276V", - "S282F", - "H299Q", - "Q324H", - "L369F", - "V382I", - "A394V", - "R407Q", - "V414F" - ], - "E3": [ - "K26A", - "A32M", - "I33M", - "A36K", - "V38I" - ], - "nsP1": [ - "I81V", - "K85R", - "E111D", - "L162I", - "R171*", - "V239I", - "D353E", - "E400D", - "E403D", - "L455P", - "S458N", - "E477I", - "L481I", - "A489T", - "K501R", - "V508I" - ], - "nsP2": [ - "A48V", - "S54A", - "V108I", - "H109N", - "S126T", - "E129D", - "K138R", - "R139K", - "I217V", - "M218I", - "K292R", - "R302Q", - "K335R", - "K350R", - "I389V", - "P404A", - "P439T", - "R458K", - "K463R", - "R487K", - "V501I", - "A502V", - "H503Q", - "V515A", - "R543K", - "V563A", - "S592G", - "S596C", - "R614H", - "T615S", - "H617Q", - "K630R", - "M641L", - "T647N", - "S669H", - "A704T", - "L752T", - "V757I", - "R788H" - ], - "nsP3": [ - "K26R", - "K40R", - "E80D", - "D87E", - "S103T", - "T198V", - "A228V", - "H312Q", - "Y323H", - "K332Q", - "P344Q", - "S346N", - "T349E", - "T352N", - "P353S", - "A354V", - "V357L", - "L358I", - "D362I", - "A363P", - "R365V", - "T368A", - "P369S", - "P371I", - "V372D", - "A378T", - "D380E", - "I382M", - "V385T", - "S388T", - "T389M", - "W390L", - "L391P", - "*393S", - "H394C", - "V400I", - "H404Q", - "V406I", - "F407L", - "N410D", - "I430V", - "S437N", - "M440L", - "N450Y", - "S451C", - "T467I", - "T478K", - "P479T", - "P480S", - "Q481*", - "A482V", - "*485Q", - "A486T", - "T490A", - "R515T", - "A516V", - "V533R", - "R535G", - "D554E" - ], - "nsP4": [ - "V21A", - "I34N", - "E43I", - "A47S", - "R78K", - "I80L", - "S82G", - "T90S", - "A113V", - "S116N", - "V127M", - "N243C", - "S284R", - "C365S", - "M437V", - "N456Q", - "E499I", - "Y550Q", - "T554A", - "F562H", - "R590Q", - "N591S", - "A593P" - ], - "nuc": [ - "C11T", - "A19T", - "C29T", - "A74G", - "C77T", - "C161T", - "T188C", - "G209A", - "T221C", - "T228C", - "T251C", - "C263T", - "T266A", - "C281T", - "A285G", - "A298G", - "C302T", - "G305T", - "T311C", - "C326T", - "A329G", - "C353T", - "C356T", - "G359A", - "C365A", - "G377C", - "T378C", - "G380A", - "C407T", - "C426T", - "A431G", - "C437T", - "T440C", - "T443A", - "C446T", - "C452T", - "C455T", - "C458T", - "T467C", - "G479A", - "G485T", - "C491T", - "C506T", - "A509G", - "G512A", - "A518T", - "C528A", - "G548A", - "A555T", - "C560G", - "C566T", - "A572C", - "C581T", - "T590G", - "G602A", - "C605T", - "C606T", - "G617C", - "C620T", - "A623T", - "C632T", - "C638T", - "C644T", - "T647C", - "G650A", - "G653A", - "C657T", - "A659G", - "A674C", - "T677C", - "C678T", - "T686C", - "C692T", - "T695C", - "G701A", - "C710T", - "A716T", - "C717T", - "C722T", - "C725T", - "C726T", - "T758C", - "G759A", - "C770A", - "T785C", - "C791T", - "G797A", - "A806G", - "C807T", - "C815T", - "T822C", - "A827T", - "A854G", - "T905A", - "C935T", - "C968T", - "C1001T", - "A1004G", - "G1034C", - "A1055T", - "T1056C", - "G1100C", - "C1103A", - "A1115G", - "C1119T", - "G1136A", - "G1148A", - "T1154C", - "G1166A", - "C1175T", - "G1184A", - "T1187C", - "C1190T", - "C1191T", - "C1194T", - "G1205T", - "C1208A", - "A1214T", - "A1229T", - "G1235A", - "T1238C", - "G1241A", - "A1244T", - "T1247C", - "A1253T", - "A1259G", - "A1265G", - "G1268A", - "G1274A", - "A1275C", - "A1277G", - "T1280C", - "G1289C", - "A1292G", - "C1301T", - "C1340T", - "C1346T", - "T1349C", - "T1352C", - "C1355T", - "G1358A", - "C1361G", - "C1364T", - "A1370G", - "T1373A", - "C1376T", - "C1379T", - "C1388T", - "A1397G", - "G1400A", - "T1408C", - "A1409T", - "T1415C", - "G1417A", - "G1427A", - "C1430T", - "G1436T", - "G1439A", - "A1443C", - "G1457A", - "A1472G", - "G1473A", - "A1474T", - "C1485A", - "G1487A", - "T1496A", - "T1502C", - "G1509A", - "G1511A", - "G1514A", - "A1523C", - "A1529G", - "T1535C", - "C1544T", - "A1546G", - "C1553T", - "A1559G", - "C1565A", - "G1566A", - "T1572C", - "G1574A", - "C1583A", - "T1586G", - "T1589G", - "G1598A", - "T1604A", - "G1610A", - "C1622G", - "C1626T", - "A1649T", - "C1652T", - "A1658C", - "C1668A", - "G1673A", - "C1674T", - "C1685T", - "C1697T", - "A1703G", - "C1706T", - "A1709G", - "C1712T", - "C1715T", - "C1718T", - "C1721T", - "T1724C", - "C1728T", - "C1748G", - "C1749A", - "G1751A", - "C1754T", - "G1757A", - "T1763G", - "A1778C", - "A1781T", - "C1792T", - "G1799A", - "C1802A", - "T1805G", - "T1808C", - "T1809G", - "T1814A", - "C1832T", - "G1835T", - "T1841G", - "C1844T", - "G1862C", - "G1868A", - "G1871A", - "C1883T", - "C1886A", - "G1889A", - "C1895T", - "A1898G", - "A1901T", - "T1913C", - "C1919T", - "C1922T", - "G1937A", - "C1943T", - "C1956T", - "C1961T", - "T1967C", - "G1971A", - "C1974A", - "C1976T", - "C1986T", - "C1991T", - "C2009T", - "G2026C", - "A2030G", - "A2036T", - "A2042G", - "C2046T", - "C2051T", - "C2054T", - "A2062G", - "G2065A", - "G2066A", - "C2072T", - "G2081A", - "A2087G", - "T2096C", - "A2099C", - "C2111T", - "T2115C", - "A2117G", - "A2123G", - "G2129A", - "G2150A", - "T2154C", - "A2159G", - "C2171A", - "A2174T", - "C2177A", - "C2180T", - "G2183A", - "G2189T", - "T2198A", - "C2207A", - "G2210A", - "A2216C", - "A2219G", - "C2222T", - "C2231A", - "C2234T", - "C2243T", - "T2246C", - "C2249T", - "A2255G", - "G2285A", - "C2288T", - "T2294C", - "A2298G", - "C2300T", - "G2303C", - "C2328T", - "G2330A", - "C2348T", - "T2351A", - "A2366G", - "A2372C", - "T2375C", - "C2390T", - "A2408G", - "A2417T", - "A2426C", - "C2429G", - "T2432C", - "T2435C", - "A2436C", - "A2438C", - "G2441T", - "C2447T", - "C2453T", - "T2462A", - "G2465A", - "G2474T", - "A2477C", - "C2507T", - "T2522C", - "A2524G", - "T2534C", - "C2537T", - "T2540C", - "G2554A", - "C2564T", - "C2573A", - "T2576C", - "T2594G", - "C2606G", - "C2612T", - "A2633G", - "A2639C", - "C2642T", - "C2645T", - "T2651C", - "A2653G", - "A2654G", - "T2660A", - "G2663A", - "T2681A", - "C2684G", - "A2698G", - "C2708T", - "T2711C", - "C2715T", - "T2720G", - "A2753T", - "T2756C", - "A2762G", - "T2765C", - "A2783G", - "C2792A", - "G2801A", - "G2810A", - "A2814G", - "C2816T", - "C2831T", - "G2834A", - "T2850C", - "G2852A", - "T2855C", - "C2859G", - "C2861A", - "C2864T", - "A2870G", - "T2879C", - "G2885A", - "C2894T", - "G2897A", - "C2903T", - "C2909T", - "T2921C", - "T2922C", - "C2933T", - "A2936T", - "C2948T", - "C2951T", - "C2964A", - "A2969T", - "T2972C", - "C2985T", - "C2987G", - "T3011C", - "T3014C", - "G3022A", - "T3030C", - "G3035A", - "A3037G", - "C3041T", - "T3053C", - "C3056G", - "T3071C", - "C3074T", - "G3089A", - "G3098A", - "T3101C", - "G3109A", - "C3116A", - "C3119T", - "T3126C", - "G3128A", - "G3134A", - "A3137G", - "G3149C", - "G3150A", - "C3154T", - "T3158A", - "T3161C", - "G3164A", - "T3193C", - "T3197C", - "C3204T", - "C3212A", - "C3230T", - "A3233G", - "C3236T", - "C3243T", - "A3254C", - "A3263G", - "G3272T", - "G3277A", - "G3278A", - "C3281T", - "C3293T", - "G3308C", - "C3321T", - "C3326T", - "A3329G", - "G3332A", - "G3335A", - "T3337C", - "C3338G", - "G3341A", - "G3344A", - "C3350T", - "T3356C", - "A3362G", - "A3365G", - "A3374T", - "A3389C", - "C3395T", - "C3396T", - "C3407T", - "C3410T", - "T3416C", - "A3423G", - "G3434A", - "A3435T", - "C3440T", - "C3443T", - "C3446T", - "G3452C", - "C3458T", - "C3461G", - "A3464G", - "T3470G", - "T3476A", - "C3482A", - "A3485G", - "G3490A", - "A3492T", - "A3497G", - "C3500A", - "T3506C", - "C3512T", - "A3518G", - "G3521A", - "C3524T", - "T3527C", - "T3530C", - "A3533G", - "C3534T", - "A3538G", - "C3542T", - "C3548T", - "T3551C", - "C3557T", - "T3560A", - "A3570C", - "G3572A", - "C3578A", - "A3581C", - "G3587A", - "C3589A", - "T3600C", - "G3602A", - "G3608A", - "C3611T", - "T3614C", - "C3623T", - "T3632G", - "A3644C", - "A3654C", - "G3655A", - "G3659A", - "T3692C", - "A3693C", - "T3704C", - "T3716C", - "T3719C", - "G3731A", - "A3743C", - "C3752T", - "C3756T", - "G3759A", - "T3773C", - "C3774T", - "C3779T", - "A3782T", - "A3809T", - "C3815T", - "T3818C", - "C3827T", - "A3828C", - "G3830A", - "T3842C", - "G3848C", - "G3854T", - "A3857T", - "C3861A", - "A3863G", - "T3878C", - "G3881A", - "T3893A", - "C3903A", - "T3904C", - "A3908G", - "A3917G", - "G3918A", - "G3920A", - "C3956T", - "C3959A", - "T3968C", - "C3971T", - "C3980T", - "T3983A", - "C3986A", - "A3989G", - "T3995C", - "C3998T", - "G4012A", - "A4013C", - "G4016A", - "C4019T", - "A4022G", - "A4028C", - "T4037A", - "G4049A", - "G4055T", - "C4058T", - "C4061T", - "T4067C", - "A4073T", - "A4079G", - "G4082A", - "C4085A", - "C4088T", - "T4094C", - "G4097C", - "C4103T", - "A4108G", - "A4118T", - "C4121G", - "C4130A", - "C4139T", - "A4149C", - "A4150G", - "A4151C", - "A4160G", - "T4166C", - "T4169C", - "A4178C", - "C4181A", - "A4190C", - "A4193G", - "C4196A", - "C4197A", - "A4199G", - "A4217T", - "G4220A", - "C4223T", - "G4238A", - "C4247T", - "C4250T", - "C4253T", - "A4256G", - "A4262G", - "G4268T", - "A4271T", - "T4277C", - "A4280G", - "G4283A", - "C4284T", - "C4292A", - "G4295T", - "G4301A", - "G4304A", - "C4307A", - "C4319T", - "C4325T", - "A4335C", - "A4337C", - "T4338A", - "T4340C", - "G4346A", - "C4349T", - "T4361G", - "C4367T", - "A4370T", - "T4379A", - "C4389A", - "C4404T", - "T4413C", - "G4418T", - "A4421G", - "T4424A", - "G4427A", - "C4433T", - "A4436C", - "C4439T", - "G4448A", - "C4466T", - "A4472G", - "G4478A", - "G4481T", - "T4502A", - "A4503C", - "C4514T", - "C4529T", - "C4535T", - "G4544A", - "G4550A", - "A4559T", - "T4562C", - "C4574A", - "G4580A", - "G4586C", - "G4589A", - "C4592T", - "C4595G", - "T4613C", - "C4616T", - "A4623G", - "C4624T", - "A4631G", - "C4637A", - "C4640T", - "G4643A", - "C4647T", - "A4658T", - "G4661A", - "C4667T", - "G4673A", - "A4676G", - "C4682T", - "A4691G", - "C4697T", - "A4700G", - "G4709C", - "T4712A", - "C4714T", - "A4721G", - "C4727T", - "G4733A", - "T4740C", - "T4745C", - "A4754C", - "C4760T", - "T4772C", - "A4773C", - "G4775A", - "T4778G", - "T4787C", - "G4793A", - "A4802G", - "C4808A", - "A4811T", - "T4817C", - "A4823G", - "C4832T", - "T4833C", - "G4835C", - "C4838T", - "T4856G", - "A4892G", - "T4898A", - "A4901G", - "C4907T", - "A4910G", - "T4919C", - "G4922A", - "G4934A", - "A4940C", - "T4943G", - "C4967G", - "C4970T", - "G4988A", - "T4994G", - "G4997A", - "T4998C", - "T5009A", - "C5018T", - "C5021T", - "G5024C", - "A5025C", - "C5062A", - "G5068A", - "A5076G", - "C5077A", - "C5086A", - "G5087T", - "C5088T", - "C5092T", - "A5099G", - "G5100C", - "C5103A", - "T5105C", - "A5108C", - "C5111T", - "G5115A", - "A5116T", - "G5118C", - "A5120T", - "A5124G", - "G5125T", - "G5126T", - "T5132C", - "A5133G", - "A5135C", - "C5136T", - "C5138T", - "C5142A", - "C5143T", - "T5146A", - "G5163A", - "A5165G", - "C5171G", - "T5174C", - "A5177G", - "G5184A", - "T5185C", - "G5194C", - "C5195G", - "C5197T", - "G5200T", - "T5203C", - "A5207T", - "A5209C", - "C5211T", - "A5212G", - "G5219C", - "A5225G", - "G5229A", - "T5243A", - "G5247A", - "T5250C", - "A5259G", - "C5270T", - "A5273T", - "A5279C", - "C5294T", - "T5300C", - "A5303G", - "G5309T", - "G5312A", - "C5315T", - "A5318T", - "A5319G", - "A5321G", - "G5341A", - "A5348G", - "A5349C", - "A5357G", - "A5379T", - "T5381C", - "A5382T", - "A5408T", - "T5411C", - "A5414G", - "T5417A", - "C5420T", - "C5431T", - "A5435G", - "G5453T", - "C5464A", - "C5466A", - "C5469T", - "C5472T", - "G5474A", - "C5476T", - "T5484C", - "G5487A", - "G5495T", - "A5498G", - "A5499G", - "C5505T", - "T5507G", - "G5510A", - "C5574A", - "G5575C", - "A5576T", - "C5578T", - "T5582C", - "C5597G", - "C5603T", - "C5607T", - "G5621A", - "T5624C", - "G5628A", - "T5629G", - "A5634G", - "C5642T", - "G5648A", - "T5657C", - "T5672G", - "G5678A", - "T5690C", - "T5693A", - "A5702G", - "T5711C", - "T5720C", - "T5736C", - "G5747A", - "A5750T", - "A5753G", - "A5756G", - "T5764C", - "T5766C", - "T5771C", - "G5783T", - "A5792G", - "A5795G", - "T5803A", - "T5810C", - "C5826T", - "G5829A", - "A5830T", - "A5837G", - "G5841A", - "C5842G", - "C5849T", - "A5858G", - "C5862T", - "C5867T", - "C5882T", - "A5885G", - "A5891G", - "C5894T", - "G5897A", - "T5900C", - "A5912G", - "T5930C", - "G5935A", - "A5940C", - "T5942A", - "A5946G", - "C5954G", - "T5963C", - "C5964T", - "A5969G", - "A5970T", - "A6002G", - "T6008C", - "C6020T", - "T6029C", - "C6032T", - "A6038C", - "C6040T", - "G6041T", - "A6047G", - "G6049A", - "C6050T", - "G6056A", - "G6065C", - "T6071G", - "C6077T", - "G6080T", - "G6081A", - "G6086A", - "A6092G", - "C6098T", - "T6101A", - "T6119C", - "C6137T", - "C6140G", - "A6155G", - "T6158C", - "C6170T", - "C6173T", - "G6176A", - "A6185G", - "A6200C", - "C6212T", - "A6218T", - "C6227T", - "A6230T", - "C6242G", - "C6248T", - "G6257A", - "T6263G", - "G6275A", - "C6278T", - "T6281C", - "C6282T", - "G6296A", - "T6302G", - "A6308C", - "A6312C", - "A6314G", - "C6326T", - "G6332A", - "A6341G", - "G6344A", - "A6347T", - "C6351T", - "C6356T", - "T6362C", - "T6368C", - "C6383T", - "C6392T", - "G6395A", - "C6401T", - "G6419A", - "C6422T", - "A6425G", - "A6429T", - "A6430G", - "C6431T", - "C6434T", - "C6467T", - "A6491G", - "C6497T", - "C6501T", - "A6509T", - "G6512A", - "T6515C", - "T6521C", - "C6542T", - "C6551T", - "C6554A", - "C6560T", - "G6575A", - "T6590A", - "A6593T", - "A6599C", - "C6608G", - "A6611G", - "C6615A", - "T6620C", - "A6623G", - "G6626A", - "C6632A", - "C6644A", - "G6650A", - "T6656C", - "T6665C", - "C6666T", - "G6668A", - "C6677T", - "A6683T", - "T6687C", - "A6698G", - "T6704C", - "C6710T", - "C6711T", - "G6713A", - "T6716G", - "T6722C", - "C6732T", - "T6737C", - "G6746C", - "A6752G", - "C6767T", - "G6773T", - "G6776A", - "T6795A", - "C6801T", - "T6809C", - "C6818T", - "G6857A", - "C6861T", - "A6863G", - "T6869C", - "C6878T", - "G6881A", - "T6884C", - "G6893A", - "A6896G", - "C6902T", - "C6906T", - "A6908G", - "G6917C", - "T6920A", - "T6923C", - "T6926A", - "A6938C", - "A6947T", - "A6953G", - "G6956A", - "C6971T", - "G6974T", - "A6977T", - "G6986A", - "C6989T", - "C6992T", - "C7001T", - "A7011G", - "C7022T", - "C7028T", - "C7031T", - "C7034T", - "T7040C", - "T7050C", - "A7052C", - "T7067A", - "A7068C", - "C7070G", - "A7073G", - "C7076T", - "T7079C", - "A7082T", - "C7088T", - "A7091C", - "C7106T", - "A7109T", - "A7115C", - "C7127T", - "A7130G", - "G7175A", - "C7178T", - "A7181T", - "G7190A", - "C7193A", - "C7196A", - "G7197A", - "A7198T", - "G7205C", - "C7214T", - "T7217C", - "A7220C", - "C7226T", - "T7229C", - "C7259T", - "A7265G", - "T7268C", - "C7275T", - "A7298G", - "A7304T", - "A7307C", - "A7310G", - "C7313T", - "G7322A", - "C7328T", - "A7343C", - "T7347C", - "T7350C", - "C7352G", - "G7358A", - "G7361A", - "A7362G", - "T7364C", - "G7379A", - "T7386C", - "T7387A", - "T7388C", - "G7394A", - "G7397A", - "T7400C", - "G7418T", - "T7421C", - "A7433C", - "C7454T", - "T7460C", - "T7463C", - "C7469A", - "A7470C", - "G7471A", - "A7474G", - "G7479C", - "A7481T", - "T7487C", - "A7490G", - "A7496G", - "G7502A", - "T7508A", - "G7511A", - "C7514T", - "A7525G", - "C7538T", - "G7541A", - "A7544G", - "C7549T", - "T7567C", - "A7570T", - "C7577T", - "A7584T", - "A7598G", - "T7599C", - "G7621T", - "G7648A", - "C7654T", - "T7657C", - "T7660C", - "C7661T", - "G7663A", - "T7666C", - "A7672G", - "A7675G", - "T7690A", - "T7693A", - "A7701G", - "C7703T", - "G7714A", - "C7720T", - "G7723A", - "G7732A", - "A7735C", - "G7762T", - "A7771T", - "G7774A", - "C7782T", - "A7784G", - "A7792G", - "G7797T", - "T7810C", - "A7818C", - "G7820A", - "G7834A", - "C7839A", - "T7840C", - "G7843A", - "C7846A", - "G7855A", - "G7858A", - "C7861T", - "T7867G", - "G7883A", - "T7884C", - "T7885C", - "C7888T", - "G7903A", - "C7918T", - "A7924G", - "G7927A", - "T7933A", - "C7945T", - "C7951T", - "A7952T", - "C7960T", - "C7969T", - "C7972T", - "A7987T", - "C7990T", - "C8005T", - "G8008A", - "T8017C", - "C8032T", - "C8038T", - "C8041A", - "C8044T", - "G8047T", - "T8056G", - "T8080C", - "G8086A", - "C8092T", - "A8095C", - "C8101T", - "G8116A", - "C8122T", - "C8137A", - "G8143T", - "A8146G", - "C8149T", - "C8155G", - "C8161T", - "C8170T", - "A8176C", - "C8194T", - "G8200A", - "A8212G", - "A8218T", - "G8224A", - "T8236C", - "C8239T", - "C8242A", - "C8254A", - "C8260T", - "G8266C", - "C8267A", - "T8269A", - "A8284G", - "T8293G", - "C8299T", - "G8302A", - "T8308C", - "A8311G", - "C8317T", - "C8318T", - "C8329T", - "T8350C", - "G8359A", - "C8362T", - "C8365A", - "T8368A", - "G8383A", - "G8410T", - "C8422T", - "A8431T", - "A8440T", - "G8443A", - "C8461A", - "A8462G", - "A8463C", - "G8464A", - "G8473A", - "T8476C", - "T8477C", - "G8480A", - "C8481T", - "A8482G", - "A8485G", - "T8491C", - "G8492A", - "C8493A", - "C8494G", - "G8498A", - "C8506T", - "G8509T", - "C8515T", - "G8521A", - "C8522T", - "T8536G", - "T8537C", - "G8542A", - "C8566T", - "A8572G", - "C8576T", - "G8578A", - "C8581T", - "C8602T", - "C8620T", - "C8623G", - "C8629T", - "T8638A", - "C8641T", - "T8644C", - "T8653G", - "A8656C", - "C8659T", - "T8662A", - "G8665A", - "G8668A", - "G8671A", - "A8673G", - "G8674A", - "A8683G", - "C8686T", - "G8696A", - "G8701A", - "C8702A", - "T8710A", - "C8713A", - "G8716A", - "C8726T", - "G8728A", - "T8732C", - "A8740G", - "T8744G", - "A8746T", - "A8749G", - "G8750A", - "A8756G", - "C8757T", - "C8758T", - "C8767T", - "G8768A", - "C8770T", - "A8771C", - "C8774T", - "C8776T", - "A8787T", - "G8791A", - "A8792G", - "G8797A", - "A8806G", - "G8809T", - "C8813T", - "G8815A", - "C8830T", - "T8833C", - "A8842T", - "C8845T", - "T8851C", - "G8854A", - "C8857T", - "T8866C", - "T8869A", - "A8881G", - "A8884C", - "C8890T", - "T8893C", - "A8917C", - "A8923C", - "C8932T", - "C8941T", - "G8953A", - "T8956C", - "T8962C", - "G8971A", - "C8975T", - "G8977A", - "C8980T", - "T8983C", - "C8986T", - "T8989C", - "G9007A", - "C9019T", - "A9028C", - "T9034C", - "A9041C", - "G9043A", - "G9046A", - "C9049T", - "T9052G", - "C9058G", - "A9061G", - "T9067C", - "T9076G", - "G9085T", - "C9091T", - "A9092T", - "A9094C", - "G9112T", - "A9118G", - "A9123G", - "G9127A", - "T9133A", - "T9136A", - "G9137T", - "G9154T", - "A9178C", - "A9181T", - "A9182G", - "C9184G", - "G9190A", - "C9196A", - "G9202T", - "A9209T", - "C9211A", - "G9220A", - "G9229A", - "G9233T", - "T9235A", - "G9238A", - "G9244C", - "T9247G", - "T9254C", - "A9256G", - "C9265T", - "T9283A", - "G9295A", - "G9301A", - "C9310A", - "A9313G", - "A9322G", - "G9325A", - "A9337T", - "C9340T", - "G9346T", - "C9355G", - "A9364C", - "G9367A", - "C9371T", - "A9379C", - "T9385A", - "A9389G", - "T9394C", - "C9408T", - "T9409C", - "T9412A", - "C9415T", - "C9427T", - "A9431C", - "C9436T", - "C9442A", - "C9445T", - "C9446T", - "C9451T", - "T9454C", - "C9460G", - "G9463A", - "T9469A", - "A9475G", - "C9493A", - "C9505A", - "T9508A", - "C9517T", - "A9529T", - "A9535T", - "G9538A", - "G9544A", - "G9550T", - "C9556T", - "T9577C", - "A9589G", - "A9595T", - "A9607G", - "C9631T", - "C9643T", - "A9649G", - "C9655A", - "C9667T", - "C9668T", - "T9670C", - "T9674C", - "G9676A", - "G9697A", - "T9703C", - "G9707A", - "A9712C", - "G9715A", - "C9728T", - "C9730G", - "A9736G", - "C9740A", - "C9744T", - "C9748T", - "C9751T", - "C9763T", - "G9766A", - "G9783A", - "G9787A", - "G9799A", - "A9802C", - "G9803T", - "T9808G", - "T9823A", - "A9827C", - "G9829T", - "A9835G", - "T9856C", - "C9859T", - "C9860T", - "C9874T", - "G9877A", - "T9907C", - "G9910A", - "T9919C", - "T9931C", - "T9934C", - "A9937G", - "G9961T", - "G10012A", - "C10032T", - "C10048T", - "C10051A", - "A10061C", - "A10063C", - "T10084A", - "G10091A", - "C10093T", - "C10095T", - "G10099A", - "A10105G", - "G10106A", - "A10109C", - "A10123T", - "C10124T", - "C10129T", - "C10130T", - "G10135A", - "C10138T", - "C10141T", - "G10144A", - "C10153T", - "A10156G", - "C10163T", - "T10165A", - "C10174T", - "C10176T", - "T10189C", - "T10207C", - "G10210A", - "T10214A", - "G10219A", - "C10234T", - "G10237A", - "C10246G", - "A10249G", - "C10255T", - "T10273C", - "A10276C", - "C10288T", - "T10291C", - "A10294T", - "T10303G", - "G10306A", - "G10307A", - "G10309T", - "A10313C", - "A10324G", - "C10326T", - "T10333A", - "C10336T", - "C10345A", - "A10346G", - "A10348T", - "T10351C", - "T10357C", - "C10358T", - "T10366C", - "G10372T", - "C10375T", - "A10378T", - "G10390A", - "C10396T", - "C10402T", - "A10417G", - "G10420A", - "T10426G", - "A10432G", - "T10456A", - "T10459G", - "A10460G", - "G10464A", - "C10465T", - "C10468T", - "A10474C", - "G10475A", - "C10477T", - "A10495T", - "C10496T", - "T10498A", - "C10501A", - "A10573G", - "T10576C", - "G10579A", - "T10600C", - "A10603G", - "C10623T", - "C10633T", - "T10636C", - "T10648C", - "C10655T", - "G10657A", - "A10658G", - "C10661T", - "G10676A", - "A10684C", - "C10693T", - "A10696T", - "T10702G", - "T10711G", - "G10714A", - "T10717C", - "G10740A", - "T10747A", - "G10753A", - "T10768A", - "A10787G", - "A10789G", - "G10798C", - "C10810T", - "T10813C", - "C10816A", - "G10819A", - "C10824T", - "A10825T", - "T10828A", - "C10832T", - "T10840C", - "C10852T", - "C10856T", - "A10885G", - "A10891G", - "G10892A", - "T10894C", - "T10906C", - "C10918T", - "G10919A", - "T10920C", - "G10921A", - "T10928A", - "C10930G", - "T10960C", - "C10966T", - "A10994G", - "A10999C", - "C11008T", - "C11014T", - "A11023G", - "C11029G", - "A11032G", - "T11035A", - "T11054A", - "G11062T", - "T11065C", - "A11071G", - "A11079G", - "G11089A", - "C11095T", - "C11099T", - "C11101G", - "A11104G", - "A11107C", - "C11110T", - "A11113G", - "C11115A", - "T11116G", - "T11117G", - "C11128T", - "T11134C", - "C11143T", - "C11158T", - "C11161T", - "A11164G", - "A11167G", - "T11170C", - "A11176G", - "G11200T", - "C11206A", - "T11209C", - "G11218T", - "A11233G", - "C11240T", - "G11242A", - "C11254A", - "G11278A", - "A11288G", - "C11302T", - "A11329G", - "T11333C", - "A11340G", - "C11346A", - "G11347A", - "T11354C", - "A11358T", - "T11359A", - "A11363C", - "C11365T", - "G11366A", - "A11380C", - "T11383C", - "C11419T" - ] - } - }, - "name": "MK028853.1", - "node_attrs": { - "author": { - "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", - "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." - }, - "country": { - "confidence": { - "Argentina": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Argentina" - }, - "div": 0.20110887411809814, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2018.521917808219, - 2018.521917808219 - ], - "value": 2018.521917808219 - }, - "place_of_collection": { - "value": "Argentina" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2018": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2018" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: S325A; E2: S381A; E3: I21M, I33L; nsP1: S458C, T459S, T466S; nsP2: E145D, E639D; nsP3: V173Q, S284A, P343H, R347S, E355D, T381S, I382L, A405E, G484V, S518C; nsP4: S35A, E249D, S284R, M437I" - }, - "mutations": { - "E1": [ - "S325A" - ], - "E2": [ - "S381A" - ], - "E3": [ - "I21M", - "I33L" - ], - "nsP1": [ - "S458C", - "T459S", - "T466S" - ], - "nsP2": [ - "E145D", - "E639D" - ], - "nsP3": [ - "V173Q", - "S284A", - "P343H", - "R347S", - "E355D", - "T381S", - "I382L", - "A405E", - "G484V", - "S518C" - ], - "nsP4": [ - "S35A", - "E249D", - "S284R", - "M437I" - ], - "nuc": [ - "G464T", - "T554G", - "T830A", - "A1079C", - "C1367A", - "A1416T", - "A1419T", - "C1441G", - "C1935A", - "A1979C", - "A2084C", - "A2256C", - "T2411G", - "T3047G", - "T3176A", - "C3489A", - "T3491G", - "A3543C", - "G3566T", - "A4004T", - "T4064A", - "A4136C", - "G4157T", - "G4202T", - "A4454C", - "G4548C", - "T4549A", - "G4649C", - "T4694A", - "T4881G", - "A4973C", - "C5059A", - "G5060T", - "A5072C", - "A5078T", - "T5090G", - "A5096T", - "T5129A", - "A5172T", - "A5175T", - "G5186T", - "C5245A", - "C5267A", - "G5482T", - "A5583T", - "G5777T", - "T5805G", - "T6182G", - "T6197G", - "T6446A", - "A6449C", - "G6488T", - "A6552C", - "A6659T", - "G6695C", - "T6749A", - "T6911A", - "G7013T", - "G7049T", - "A7055T", - "C7151A", - "A7579C", - "A7783T", - "C7910A", - "G8020T", - "C8026A", - "G8287T", - "A8314T", - "T8449G", - "A8483C", - "A8533T", - "G8626C", - "C8825A", - "A8992C", - "T9370G", - "C9404A", - "A9592C", - "T9634A", - "T9704G", - "A9742C", - "C9764A", - "C9826G", - "A9862C", - "C9958G", - "C9973G", - "G10258C", - "G10411T", - "A10429T", - "C10543A", - "C10762A", - "C10837A", - "C10849A", - "T10973G", - "C11074A", - "C11173A", - "A11332C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: M39L; CP: F15L, D55S, K65R, Q78K, K82R, K85T, S92G, T93P, G94S, P98Q, S103N, T104P, S183N, E260D, K266R; E1: A28S, T65A, S98A, V137I, E139G, N216S, H262L, G298D, E300G, F343I, L373T, L374I, H390R, T411S, V419A; E2: M16T, M70V, H71Q, V119I, T120I, S140N, A155T, T177A, Q187K, L197S, Y238F, D249N, L287F, D301N, N347D, S395T, T420A; E3: T18A, V38L, R56K; nsP1: I227V, G409E, R465K, K476R, P478A, T483S; nsP2: M224L, S346C, D352N, P439S, T443S, Q565H, S567A, I597V, H617Q, R619P, V637I, N642H, S661H, V681T, I720V; nsP3: A61G, A62V, N74S, I96L, N117S, A174V, T227N, T229A, S263N, L268M, S346R, E350Q, P353L, A354P, A367S, T368I, L374F, E377A, A378V, E379T, I384V, L395P, H404Y, V421I, F466T, A482T, A516T, V533E, K534R; nsP4: V25I, L54V, Q58P, K89R, T90S, N111D, V121I, A126T, E238D, C365W, A537T, T583A" - }, - "mutations": { - "6k": [ - "M39L" - ], - "CP": [ - "F15L", - "D55S", - "K65R", - "Q78K", - "K82R", - "K85T", - "S92G", - "T93P", - "G94S", - "P98Q", - "S103N", - "T104P", - "S183N", - "E260D", - "K266R" - ], - "E1": [ - "A28S", - "T65A", - "S98A", - "V137I", - "E139G", - "N216S", - "H262L", - "G298D", - "E300G", - "F343I", - "L373T", - "L374I", - "H390R", - "T411S", - "V419A" - ], - "E2": [ - "M16T", - "M70V", - "H71Q", - "V119I", - "T120I", - "S140N", - "A155T", - "T177A", - "Q187K", - "L197S", - "Y238F", - "D249N", - "L287F", - "D301N", - "N347D", - "S395T", - "T420A" - ], - "E3": [ - "T18A", - "V38L", - "R56K" - ], - "nsP1": [ - "I227V", - "G409E", - "R465K", - "K476R", - "P478A", - "T483S" - ], - "nsP2": [ - "M224L", - "S346C", - "D352N", - "P439S", - "T443S", - "Q565H", - "S567A", - "I597V", - "H617Q", - "R619P", - "V637I", - "N642H", - "S661H", - "V681T", - "I720V" - ], - "nsP3": [ - "A61G", - "A62V", - "N74S", - "I96L", - "N117S", - "A174V", - "T227N", - "T229A", - "S263N", - "L268M", - "S346R", - "E350Q", - "P353L", - "A354P", - "A367S", - "T368I", - "L374F", - "E377A", - "A378V", - "E379T", - "I384V", - "L395P", - "H404Y", - "V421I", - "F466T", - "A482T", - "A516T", - "V533E", - "K534R" - ], - "nsP4": [ - "V25I", - "L54V", - "Q58P", - "K89R", - "T90S", - "N111D", - "V121I", - "A126T", - "E238D", - "C365W", - "A537T", - "T583A" - ], - "nuc": [ - "C29A", - "T44C", - "A53G", - "G98A", - "C140T", - "T149C", - "T185A", - "A200G", - "A308G", - "T332C", - "G341A", - "G344C", - "A395T", - "G398A", - "C399T", - "C401G", - "C470T", - "T488C", - "C503T", - "C521A", - "A555C", - "C575T", - "T590C", - "T593C", - "T599C", - "G608C", - "C611G", - "A623G", - "A689G", - "A713G", - "G719A", - "A723G", - "A729C", - "G731A", - "T740C", - "G752T", - "T755C", - "T776A", - "C782T", - "C1037T", - "G1040T", - "G1052A", - "A1055C", - "A1067G", - "A1109T", - "G1118A", - "C1139T", - "A1196G", - "A1199G", - "A1202G", - "G1205C", - "G1223A", - "G1270A", - "A1310G", - "T1313C", - "T1334A", - "A1343G", - "C1361T", - "C1403A", - "C1407T", - "G1438A", - "A1463G", - "A1471G", - "C1476G", - "A1481C", - "T1484G", - "A1491T", - "T1493C", - "A1508T", - "A1520G", - "G1538A", - "C1568T", - "A1571G", - "T1586C", - "C1622T", - "C1625T", - "G1640A", - "C1646A", - "C1679T", - "C1691T", - "C1697G", - "C1715A", - "G1727T", - "C1742A", - "G1751T", - "A1772C", - "A1778G", - "A1790G", - "G1838A", - "T1847C", - "C1850T", - "A1853G", - "T1865A", - "A1901G", - "A1934G", - "T1973C", - "A1982G", - "C1985A", - "A2000G", - "A2012G", - "C2018T", - "C2027T", - "A2039G", - "C2045T", - "G2063A", - "T2093A", - "A2108T", - "C2111A", - "G2156A", - "G2168A", - "A2174G", - "A2213T", - "C2231T", - "A2276G", - "A2319C", - "C2327T", - "T2462G", - "A2471C", - "G2489T", - "T2546C", - "C2549T", - "C2553A", - "G2555A", - "C2561T", - "A2567G", - "C2570T", - "T2579C", - "G2582A", - "T2588A", - "C2606T", - "C2612G", - "T2621C", - "A2685T", - "T2687C", - "T2696C", - "G2703A", - "G2717A", - "A2732C", - "G2741A", - "G2744A", - "A2753C", - "C2759T", - "G2780T", - "A2786G", - "C2789T", - "C2805A", - "G2813A", - "C2822A", - "C2837T", - "C2849T", - "C2883T", - "A2918G", - "A2927G", - "A2930T", - "G2954C", - "C2964T", - "A2976T", - "T2978G", - "C2984T", - "T3008C", - "G3023A", - "A3068G", - "A3095G", - "A3104G", - "G3110A", - "T3113G", - "G3131T", - "C3170T", - "C3179T", - "G3182T", - "A3185G", - "A3194G", - "A3203G", - "G3215C", - "C3218T", - "A3227C", - "A3239T", - "G3242C", - "T3248C", - "T3251A", - "T3260C", - "T3296C", - "A3299G", - "G3320T", - "G3344C", - "C3345T", - "T3347G", - "T3348G", - "C3359T", - "A3374G", - "C3401T", - "C3417T", - "T3425C", - "C3437T", - "A3438G", - "T3476C", - "C3500G", - "A3503T", - "G3505C", - "T3515C", - "G3536A", - "C3552T", - "G3558A", - "A3573C", - "C3575T", - "C3596T", - "C3626T", - "T3630C", - "C3631A", - "C3636T", - "T3641C", - "T3647C", - "G3662A", - "C3665T", - "T3683C", - "T3689C", - "G3690A", - "T3691C", - "A3698C", - "G3722A", - "G3740A", - "G3746A", - "G3758T", - "A3807G", - "A3809C", - "T3818A", - "A3824G", - "A3851G", - "A3860T", - "G3866A", - "G3872A", - "C3875T", - "A3899C", - "C3903T", - "G3938C", - "C3945A", - "G3947A", - "T3965C", - "G3977A", - "T3983C", - "T3987C", - "C3992A", - "A4028G", - "T4034C", - "C4040T", - "G4052A", - "C4053A", - "C4106T", - "C4121T", - "G4127A", - "T4142A", - "C4163T", - "A4190T", - "T4205A", - "C4213G", - "C4216T", - "C4226A", - "C4244T", - "A4252G", - "A4265G", - "T4310G", - "A4313G", - "A4317C", - "C4319A", - "C4334T", - "G4355A", - "A4364G", - "T4373C", - "C4376G", - "A4381G", - "C4382T", - "A4385G", - "T4425C", - "C4430T", - "A4442T", - "A4461C", - "G4469A", - "G4481A", - "T4484A", - "C4485T", - "A4493G", - "A4499T", - "T4502G", - "G4505A", - "A4508G", - "C4541T", - "C4552T", - "A4556G", - "A4565G", - "C4569T", - "A4631C", - "T4646C", - "T4664C", - "G4670A", - "C4688G", - "C4711A", - "A4716G", - "T4748A", - "A4754T", - "A4757G", - "T4790G", - "A4814T", - "T4817A", - "G4819A", - "C4820T", - "G4826A", - "G4829C", - "T4833A", - "C4841T", - "A4853G", - "A4862C", - "C4880G", - "T4886C", - "A4889C", - "G4913A", - "T4916C", - "C4937T", - "G4946A", - "G4949A", - "G5015A", - "G5024A", - "C5069A", - "G5079C", - "C5089T", - "G5091C", - "G5130T", - "C5134T", - "A5141G", - "C5147G", - "C5150A", - "C5151T", - "A5161C", - "A5162G", - "C5164T", - "A5165T", - "G5166A", - "A5167C", - "A5181G", - "A5192G", - "G5210A", - "T5215C", - "A5228G", - "C5241T", - "C5261T", - "A5273G", - "G5292A", - "G5309A", - "A5402G", - "C5405A", - "C5423T", - "T5427A", - "T5428C", - "A5438T", - "G5475A", - "G5495A", - "T5501A", - "C5504A", - "G5577A", - "A5600G", - "G5612T", - "T5629A", - "A5632G", - "G5651A", - "C5669T", - "A5759G", - "G5775A", - "G5780A", - "G5789A", - "T5804A", - "A5828G", - "C5862G", - "A5873G", - "A5875C", - "G5876T", - "C5888T", - "A5921G", - "A5934C", - "A5951T", - "T5960C", - "A5968G", - "C5971G", - "A5975G", - "A5978G", - "A5981G", - "T6008G", - "G6017A", - "A6023T", - "A6033G", - "G6056T", - "G6063A", - "G6065A", - "A6068G", - "G6078A", - "G6107A", - "T6110G", - "A6128G", - "C6161A", - "T6167A", - "T6174C", - "G6221A", - "C6245T", - "A6254C", - "G6260A", - "T6302A", - "C6305A", - "A6338G", - "G6353A", - "C6359A", - "C6380T", - "C6398T", - "T6410C", - "A6416C", - "A6428G", - "A6443G", - "T6455C", - "T6464C", - "T6470C", - "T6473C", - "A6476G", - "T6477C", - "T6500C", - "T6506C", - "T6524C", - "C6545G", - "A6573C", - "A6593C", - "T6596C", - "A6641G", - "C6644T", - "C6671T", - "C6677A", - "G6689A", - "A6707C", - "T6716C", - "G6719T", - "C6740T", - "G6746T", - "T6770C", - "T6788A", - "G6791A", - "T6797G", - "G6800A", - "G6803T", - "T6809A", - "G6821C", - "T6827C", - "G6872T", - "C6890T", - "G6899A", - "A6908T", - "A6938G", - "C6950G", - "C6989A", - "C7004T", - "A7019C", - "C7094G", - "C7100T", - "T7131C", - "C7139T", - "G7145A", - "T7158C", - "G7208A", - "G7232A", - "C7247T", - "A7256G", - "T7262G", - "G7286C", - "A7310C", - "G7311A", - "T7319C", - "A7343T", - "T7346G", - "C7376T", - "A7415G", - "A7430G", - "G7436A", - "C7439T", - "A7448C", - "A7449G", - "T7463G", - "G7472A", - "T7475C", - "C7573T", - "A7588T", - "T7604C", - "G7615C", - "T7624A", - "C7642T", - "G7681A", - "C7702T", - "G7724A", - "A7725G", - "G7732T", - "A7744G", - "T7750C", - "A7755G", - "G7768A", - "C7793A", - "T7798C", - "A7806G", - "G7807A", - "A7815C", - "A7816T", - "G7822A", - "A7835G", - "A7838C", - "G7841A", - "G7843T", - "C7854A", - "T7867C", - "G7869A", - "C7870T", - "A7871C", - "C7873G", - "A7942G", - "A7963C", - "A7966G", - "T7981A", - "C8045T", - "G8047A", - "G8059A", - "G8062A", - "C8074T", - "G8109A", - "C8110T", - "A8119C", - "C8125T", - "A8152G", - "T8188C", - "G8197A", - "G8206C", - "A8233C", - "A8263G", - "T8281A", - "A8305C", - "C8323T", - "C8329G", - "A8341C", - "A8357C", - "A8358G", - "A8389G", - "T8395C", - "C8416A", - "C8428T", - "C8437T", - "A8438G", - "A8440C", - "A8446G", - "G8498C", - "C8512A", - "C8548T", - "C8551A", - "G8553A", - "C8602A", - "T8610C", - "G8611A", - "A8656T", - "T8662C", - "C8702T", - "A8704G", - "C8734A", - "A8746G", - "C8752A", - "C8758A", - "A8771G", - "C8776A", - "C8779T", - "A8788G", - "T8794C", - "G8809C", - "A8821T", - "T8824A", - "T8839C", - "T8866A", - "C8872T", - "G8918A", - "C8922T", - "C8929G", - "A8935T", - "G8938A", - "G8950A", - "T8962G", - "G8982A", - "C8998T", - "A9004C", - "T9010C", - "G9013C", - "G9026A", - "C9073T", - "A9092G", - "G9097A", - "C9103A", - "C9109T", - "A9118T", - "C9122A", - "A9130C", - "C9151T", - "C9152T", - "T9153C", - "G9157C", - "A9187T", - "C9193T", - "A9205C", - "C9214T", - "A9215T", - "G9216C", - "C9217T", - "A9226C", - "A9232T", - "A9276T", - "T9283G", - "G9304A", - "G9308A", - "C9349G", - "A9352G", - "A9364T", - "A9373G", - "A9379T", - "G9424T", - "C9461T", - "G9464A", - "A9472G", - "C9481T", - "C9487T", - "C9493G", - "A9499G", - "T9508G", - "T9511G", - "G9565A", - "T9568C", - "G9574A", - "A9595C", - "C9601G", - "A9602G", - "T9610C", - "G9613C", - "C9622T", - "C9652T", - "T9682C", - "C9700G", - "A9709G", - "C9718T", - "A9745C", - "T9746A", - "T9757A", - "G9760A", - "G9769A", - "C9814T", - "G9820A", - "A9821G", - "C9838G", - "C9868T", - "T9871C", - "G9880A", - "T9892C", - "C9901T", - "C9913T", - "G9916A", - "T9922C", - "T9931G", - "A9947C", - "G10033A", - "G10036C", - "A10054G", - "G10069A", - "G10082T", - "C10090T", - "T10096C", - "C10102T", - "A10108G", - "A10132C", - "C10147T", - "A10159C", - "A10171T", - "C10177T", - "A10183G", - "A10193G", - "G10213A", - "A10228G", - "C10243T", - "A10270C", - "A10276G", - "C10282T", - "T10292G", - "G10318A", - "T10321C", - "C10339T", - "A10369G", - "A10384C", - "C10387T", - "T10393G", - "C10397T", - "G10409A", - "A10416G", - "A10453G", - "T10481C", - "T10486G", - "C10492A", - "A10495G", - "C10501G", - "C10513T", - "G10531A", - "G10549A", - "G10570A", - "G10585T", - "A10618G", - "C10637T", - "C10645A", - "A10647G", - "C10672G", - "A10678C", - "C10681T", - "G10732A", - "A10744G", - "A10765G", - "A10780G", - "A10785T", - "T10786C", - "C10795A", - "A10801G", - "A10846T", - "G10870A", - "A10885T", - "G10893A", - "A10899G", - "G10909A", - "G10915A", - "A10927T", - "C10930A", - "T10951C", - "G10957A", - "C10984T", - "T10993C", - "T10996C", - "A10999T", - "C11015T", - "A11026C", - "T11027A", - "A11047G", - "G11050C", - "A11053C", - "T11080C", - "C11101T", - "A11107T", - "T11116C", - "T11117A", - "T11118C", - "C11120A", - "C11122T", - "G11146A", - "A11169G", - "G11188A", - "T11194C", - "G11203A", - "C11215T", - "T11228C", - "A11231T", - "T11256C", - "T11269C", - "T11333A", - "A11334T", - "A11392C" - ] - } - }, - "name": "AF075255.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", - "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.24530141411809814, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1971.101095890411, - 1971.9986301369863 - ], - "value": 1971.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIIC" - }, - "year": { - "confidence": { - "1971": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: S53N; CP: Y8F, M13V, T75A, Q86K, S92R, T93N, A95G, N102S, S103G; E1: A11V, T65S, A226T, I261V, G298S, F343S, V347T, L373F, T389S, N442S; E2: V20I, S57P, K73T, I77V, R152H, K160R, A185S, N201D, A206P, I207V, S218N, A224T, V283I, H299S, Y306H, Q324S, Y328F, R407Q; nsP1: L128Q, T140S, Y143H, H146Q, R220Q, I247L, K269R, E403D, E473A, I482V, P484Q, V508I; nsP2: S54A, H109N, K223R, K338Q, K437R, L493M, E496D, Q497H, R505K, R543K, N544S, K560N, T615L, A624T, S654N, F659Y, S701N, V733I, V750A, K767R, V768T, R788H; nsP3: K26R, E51D, L79V, I156V, A178V, R328K, H343R, P344A, S347N, E348I, T349G, P353A, T356S, L358R, A378T, V385A, S388T, T389M, W390*, R392H, *393W, V406I, S423N, M440L, N450A, K457R, I459V, P469K, P479A, Q481*, A482V, V484I, S487N, R515S, C518R, Y553F, D554E; nsP4: V75I, R78K, I80M, Y101H, R112Q, S116N, M148L, S155T, A176V, V341I, C365S, L384M, S563H, T576S, S579A, T586S, R590K, A593S, A594S, H597Y" - }, - "mutations": { - "6k": [ - "S53N" - ], - "CP": [ - "Y8F", - "M13V", - "T75A", - "Q86K", - "S92R", - "T93N", - "A95G", - "N102S", - "S103G" - ], - "E1": [ - "A11V", - "T65S", - "A226T", - "I261V", - "G298S", - "F343S", - "V347T", - "L373F", - "T389S", - "N442S" - ], - "E2": [ - "V20I", - "S57P", - "K73T", - "I77V", - "R152H", - "K160R", - "A185S", - "N201D", - "A206P", - "I207V", - "S218N", - "A224T", - "V283I", - "H299S", - "Y306H", - "Q324S", - "Y328F", - "R407Q" - ], - "nsP1": [ - "L128Q", - "T140S", - "Y143H", - "H146Q", - "R220Q", - "I247L", - "K269R", - "E403D", - "E473A", - "I482V", - "P484Q", - "V508I" - ], - "nsP2": [ - "S54A", - "H109N", - "K223R", - "K338Q", - "K437R", - "L493M", - "E496D", - "Q497H", - "R505K", - "R543K", - "N544S", - "K560N", - "T615L", - "A624T", - "S654N", - "F659Y", - "S701N", - "V733I", - "V750A", - "K767R", - "V768T", - "R788H" - ], - "nsP3": [ - "K26R", - "E51D", - "L79V", - "I156V", - "A178V", - "R328K", - "H343R", - "P344A", - "S347N", - "E348I", - "T349G", - "P353A", - "T356S", - "L358R", - "A378T", - "V385A", - "S388T", - "T389M", - "W390*", - "R392H", - "*393W", - "V406I", - "S423N", - "M440L", - "N450A", - "K457R", - "I459V", - "P469K", - "P479A", - "Q481*", - "A482V", - "V484I", - "S487N", - "R515S", - "C518R", - "Y553F", - "D554E" - ], - "nsP4": [ - "V75I", - "R78K", - "I80M", - "Y101H", - "R112Q", - "S116N", - "M148L", - "S155T", - "A176V", - "V341I", - "C365S", - "L384M", - "S563H", - "T576S", - "S579A", - "T586S", - "R590K", - "A593S", - "A594S", - "H597Y" - ], - "nuc": [ - "G18T", - "A19T", - "G27T", - "T30A", - "A32T", - "A33C", - "A74G", - "C77T", - "A143C", - "C192T", - "G209A", - "C272T", - "T284C", - "C287A", - "G293C", - "A299G", - "G305A", - "T311C", - "T321C", - "C342T", - "G344A", - "G350A", - "C383T", - "A386G", - "C422T", - "T425C", - "T427A", - "G434A", - "T443C", - "C452T", - "A462T", - "T471C", - "A476G", - "C482A", - "C500T", - "C506T", - "A509C", - "A518C", - "T530C", - "C533T", - "T536C", - "T551A", - "A572T", - "T578C", - "G587C", - "C638T", - "C644A", - "T668C", - "A674T", - "A702C", - "G703A", - "C707T", - "C722T", - "C725A", - "G734A", - "A737G", - "T741C", - "T758C", - "A783C", - "G797A", - "A798C", - "A800G", - "T804C", - "A850G", - "C909A", - "G911A", - "A926C", - "G947A", - "T953C", - "C986T", - "A998G", - "A1004G", - "C1007T", - "C1031T", - "G1034T", - "G1040A", - "A1049G", - "T1056C", - "C1073T", - "T1091C", - "G1100A", - "T1151C", - "T1154C", - "A1160C", - "G1184A", - "T1187C", - "A1214G", - "C1220A", - "A1221C", - "A1229C", - "T1238C", - "G1241A", - "A1253C", - "C1266T", - "G1271A", - "A1277G", - "T1280C", - "C1281A", - "C1287T", - "G1289A", - "C1301T", - "T1304C", - "G1325A", - "T1328C", - "T1352C", - "C1355G", - "C1364T", - "T1373C", - "C1388T", - "C1403T", - "A1406G", - "A1409T", - "T1412C", - "T1418C", - "G1427A", - "C1430T", - "G1445A", - "T1455C", - "G1460C", - "A1462C", - "A1469G", - "A1481G", - "T1484C", - "A1488G", - "T1490C", - "C1495A", - "T1496G", - "A1499G", - "A1523G", - "A1526T", - "T1535C", - "G1547A", - "T1560C", - "G1566A", - "T1604G", - "T1607A", - "G1610A", - "A1613G", - "C1616T", - "C1619T", - "G1628A", - "A1637G", - "A1643C", - "A1649G", - "C1652T", - "C1667T", - "A1670T", - "A1676T", - "C1679A", - "A1682G", - "C1685A", - "T1688C", - "T1700C", - "C1712A", - "C1718G", - "C1721T", - "G1730A", - "G1733A", - "T1736C", - "C1745T", - "C1748T", - "A1760G", - "T1763C", - "C1779T", - "A1781G", - "G1784T", - "G1787A", - "C1796A", - "G1799C", - "T1805C", - "T1809G", - "A1811G", - "A1815C", - "G1817A", - "A1823G", - "C1826T", - "T1829C", - "C1832A", - "G1835C", - "T1841A", - "G1862T", - "C1880T", - "C1883A", - "C1886T", - "C1892T", - "A1898G", - "C1904T", - "T1907C", - "G1940A", - "C1955T", - "G1958A", - "C1961T", - "C1964T", - "T1967C", - "C1970T", - "C1974A", - "C1986T", - "G1988A", - "C1991T", - "C1994T", - "G2015A", - "A2021G", - "T2024C", - "A2036G", - "A2042G", - "G2069A", - "G2078A", - "C2084T", - "C2103T", - "G2105A", - "A2108G", - "G2114A", - "A2120G", - "A2138G", - "C2171A", - "G2186A", - "T2198C", - "G2201T", - "G2210A", - "A2216G", - "A2219G", - "C2222T", - "A2237C", - "A2240G", - "C2252G", - "T2261C", - "C2262T", - "C2306T", - "C2309T", - "A2317G", - "C2328T", - "G2339A", - "A2342G", - "T2354C", - "C2361T", - "C2364T", - "T2369C", - "A2372G", - "G2378A", - "A2384T", - "A2393G", - "G2396A", - "T2402C", - "T2405C", - "T2414C", - "T2423C", - "A2426C", - "C2429G", - "A2436C", - "A2438C", - "T2442C", - "T2456C", - "G2468A", - "A2477G", - "C2480T", - "A2483T", - "C2504T", - "C2507T", - "C2519T", - "T2531C", - "T2588C", - "T2594A", - "A2600G", - "C2603A", - "G2609A", - "G2615A", - "T2624C", - "A2639C", - "T2651A", - "T2660G", - "A2661C", - "T2666A", - "T2672C", - "A2690G", - "A2699G", - "T2705C", - "G2729A", - "C2745T", - "A2762G", - "T2768C", - "A2771G", - "C2789A", - "G2795A", - "A2798C", - "T2819C", - "G2834A", - "T2846C", - "C2849A", - "C2858A", - "T2891A", - "C2894T", - "G2897T", - "G2906A", - "G2912A", - "T2921G", - "A2927T", - "C2933T", - "A2936G", - "T2942C", - "A2945G", - "A2959G", - "G2960A", - "C2966A", - "T2972C", - "T2981C", - "C2987T", - "A2990G", - "A2993G", - "A3002G", - "T3029C", - "T3030C", - "G3035A", - "C3041A", - "T3044C", - "G3050A", - "C3056G", - "G3062A", - "T3071A", - "T3086C", - "G3098A", - "T3101C", - "C3105T", - "C3119A", - "T3122C", - "T3126A", - "A3137C", - "G3140T", - "G3149A", - "T3152C", - "T3158C", - "G3163A", - "A3176G", - "A3191C", - "T3209C", - "T3221C", - "A3224G", - "C3225T", - "A3227G", - "C3230T", - "C3236T", - "C3243T", - "A3254G", - "A3263C", - "G3269A", - "A3275C", - "G3277A", - "A3280G", - "C3284T", - "T3302A", - "G3320A", - "A3329T", - "G3341T", - "A3353G", - "A3362G", - "T3368G", - "T3386C", - "A3389T", - "G3398T", - "C3407T", - "C3410A", - "G3413A", - "T3416G", - "T3422C", - "G3449A", - "G3479A", - "A3492C", - "C3493T", - "A3503G", - "T3506G", - "G3519A", - "G3539A", - "C3542A", - "C3557A", - "A3563C", - "T3566C", - "A3569G", - "A3581C", - "T3590C", - "T3593C", - "G3602A", - "G3610A", - "T3614G", - "C3623T", - "T3625A", - "C3635A", - "A3644C", - "C3650T", - "T3671C", - "T3677C", - "A3693C", - "G3695A", - "A3698G", - "T3716C", - "C3734T", - "T3737C", - "G3751A", - "G3770A", - "T3773C", - "A3782T", - "T3791C", - "A3794G", - "C3797T", - "T3800C", - "C3806T", - "C3812T", - "C3827T", - "G3830A", - "T3836C", - "G3846A", - "G3848A", - "A3857C", - "T3869C", - "C3879A", - "T3887C", - "T3898C", - "A3899G", - "A3908G", - "A3917G", - "G3920C", - "A3923G", - "T3926C", - "T3941C", - "A3949G", - "G3950A", - "G3951A", - "T3952C", - "C3959G", - "T3968C", - "C3971T", - "A3974G", - "T3975C", - "C3980T", - "C3986A", - "C3992T", - "C4007G", - "G4012A", - "A4013T", - "T4014C", - "A4025C", - "C4031T", - "T4046C", - "G4052C", - "T4070C", - "A4073G", - "C4088T", - "T4094C", - "G4097A", - "T4100A", - "A4108G", - "A4115G", - "A4118G", - "C4130T", - "A4148G", - "C4154T", - "T4157C", - "A4160G", - "T4169C", - "G4172A", - "G4184C", - "C4187G", - "A4193G", - "C4196T", - "A4199G", - "A4208G", - "T4229A", - "A4235T", - "C4247T", - "G4259A", - "C4266G", - "G4268A", - "A4271G", - "G4274T", - "A4280G", - "G4283A", - "C4292T", - "C4316A", - "T4328C", - "T4331C", - "A4335C", - "T4340G", - "G4346T", - "G4352A", - "G4355C", - "C4356T", - "T4361A", - "A4370C", - "C4389A", - "C4394T", - "A4403G", - "A4406G", - "T4409C", - "C4412T", - "T4413C", - "G4418T", - "T4424G", - "A4436G", - "A4463G", - "T4484C", - "G4487A", - "T4496C", - "A4497G", - "C4514G", - "C4529T", - "G4550A", - "A4559C", - "T4562C", - "C4564T", - "A4565T", - "G4568A", - "A4577G", - "T4583C", - "G4586A", - "C4595A", - "G4598A", - "A4601G", - "C4607T", - "T4613G", - "C4616T", - "C4625G", - "C4628T", - "A4634G", - "C4637G", - "C4640T", - "G4673A", - "A4691G", - "T4712C", - "T4715G", - "C4718T", - "T4724C", - "G4730A", - "T4745C", - "T4749C", - "C4760T", - "C4766T", - "T4772C", - "A4773C", - "T4799C", - "G4805C", - "C4808T", - "A4823C", - "T4824C", - "C4838T", - "C4841A", - "T4844C", - "T4847A", - "A4859G", - "G4877A", - "C4880A", - "A4889G", - "A4892G", - "T4898A", - "A4910G", - "C4925T", - "T4943G", - "A4958G", - "C4961T", - "T4964G", - "C4973T", - "T4994C", - "T5000C", - "T5009C", - "C5012T", - "G5014A", - "C5021T", - "A5059G", - "C5061G", - "G5063T", - "G5071A", - "G5073A", - "A5074T", - "G5075C", - "A5076G", - "C5077G", - "G5081A", - "C5088G", - "G5090A", - "G5093A", - "C5098G", - "A5099T", - "T5104G", - "T5105A", - "A5129G", - "A5135T", - "T5144A", - "C5147A", - "C5150T", - "G5163A", - "A5168G", - "T5174G", - "T5175C", - "A5177G", - "T5185C", - "G5194C", - "C5195T", - "C5197T", - "G5201A", - "G5206A", - "A5207T", - "A5209G", - "G5222A", - "C5234T", - "G5247A", - "A5267G", - "C5270A", - "A5276G", - "C5297T", - "G5299A", - "A5318G", - "A5349T", - "A5357G", - "A5379G", - "A5380C", - "C5384T", - "G5387T", - "A5390T", - "A5399C", - "A5401G", - "A5406G", - "A5414C", - "T5417A", - "T5426C", - "T5429C", - "C5436A", - "C5437A", - "T5444C", - "A5450G", - "C5466G", - "C5472T", - "C5476T", - "G5481A", - "C5489T", - "G5491A", - "A5498G", - "T5507C", - "C5574T", - "G5575C", - "A5576G", - "G5579A", - "T5582A", - "T5583C", - "T5594C", - "C5597T", - "C5603A", - "T5606C", - "C5607T", - "T5615C", - "T5624G", - "A5630G", - "A5633G", - "A5634C", - "G5636A", - "T5639C", - "C5663T", - "A5675G", - "A5689T", - "T5690C", - "T5693G", - "C5708A", - "T5711C", - "C5717A", - "T5720C", - "C5723A", - "T5735C", - "A5738G", - "A5741G", - "A5744G", - "G5765A", - "T5766C", - "T5771A", - "G5783A", - "A5786G", - "T5796C", - "T5843C", - "A5858G", - "A5873C", - "G5897A", - "A5906G", - "G5909A", - "A5924T", - "G5925A", - "G5927A", - "C5933T", - "G5935A", - "A5939G", - "T5942G", - "C5948T", - "G5966T", - "A5978C", - "T5984C", - "T5990C", - "A5999G", - "T6003C", - "C6005T", - "C6014T", - "A6023G", - "T6029C", - "C6035T", - "G6037A", - "G6041A", - "A6047G", - "G6049A", - "C6050T", - "T6053G", - "A6062G", - "T6074C", - "C6077T", - "G6080A", - "G6083A", - "C6084T", - "G6086A", - "G6089A", - "A6092G", - "A6104T", - "T6110C", - "G6113A", - "G6131A", - "C6134T", - "C6140T", - "C6143T", - "A6144C", - "C6161T", - "T6165A", - "C6179T", - "T6188C", - "T6191C", - "C6194T", - "A6200G", - "T6204C", - "G6206T", - "C6212T", - "A6218G", - "A6224G", - "C6227T", - "C6229T", - "T6233C", - "T6234C", - "G6236T", - "C6242T", - "T6269C", - "A6272C", - "C6278T", - "C6282T", - "G6287A", - "T6290C", - "G6296A", - "A6308C", - "T6323C", - "C6326T", - "A6329G", - "A6336C", - "A6341G", - "A6347G", - "G6350T", - "C6365T", - "T6371C", - "G6386A", - "G6389A", - "G6395A", - "A6407G", - "C6434T", - "T6437C", - "C6449T", - "G6452A", - "T6461G", - "G6494T", - "C6497A", - "C6501T", - "G6512A", - "T6515G", - "T6521C", - "G6536A", - "C6545T", - "T6566C", - "G6575A", - "G6581A", - "T6590G", - "A6599T", - "A6602G", - "G6614A", - "T6620G", - "C6632T", - "C6635T", - "C6662A", - "T6665C", - "G6723A", - "T6728C", - "C6731T", - "G6734A", - "T6737C", - "C6758T", - "C6764T", - "T6779C", - "T6788C", - "T6795A", - "C6801T", - "C6833T", - "G6836A", - "G6845A", - "C6852A", - "T6869C", - "T6879C", - "C6906T", - "A6914G", - "T6920A", - "T6926G", - "C6944T", - "A6947C", - "A6968G", - "C7001T", - "T7010C", - "T7016C", - "T7025A", - "C7028T", - "C7031T", - "C7061T", - "T7067G", - "C7070T", - "C7076G", - "A7085G", - "T7097C", - "C7103T", - "C7106T", - "A7109C", - "A7115T", - "T7118C", - "G7124T", - "G7133A", - "C7139A", - "A7151G", - "G7154A", - "G7169A", - "G7175A", - "A7181T", - "G7190A", - "C7196A", - "G7205A", - "T7217C", - "A7220T", - "G7223A", - "T7235C", - "C7238T", - "T7268G", - "T7271C", - "T7274C", - "C7275T", - "A7283G", - "A7307T", - "C7328T", - "T7334C", - "C7340T", - "C7341A", - "T7347C", - "G7379A", - "C7382T", - "T7388C", - "T7389C", - "C7390A", - "T7391C", - "T7400C", - "G7406C", - "C7427G", - "A7428T", - "T7437G", - "A7451C", - "A7458T", - "C7469G", - "G7471A", - "G7479T", - "G7482T", - "G7484A", - "C7491T", - "T7508G", - "A7544G", - "A7558C", - "A7584T", - "A7597C", - "A7598G", - "T7603C", - "C7618T", - "T7627A", - "A7628C", - "A7630C", - "C7651G", - "T7657C", - "T7660C", - "T7682C", - "T7693A", - "G7699A", - "G7705A", - "G7717A", - "G7762T", - "A7771G", - "A7784G", - "A7804G", - "A7813C", - "C7817A", - "G7822C", - "G7834A", - "A7835C", - "T7837C", - "C7839A", - "C7845G", - "C7846T", - "G7855C", - "G7858A", - "G7864A", - "A7866G", - "A7868G", - "C7873T", - "G7876A", - "T7885G", - "C7888T", - "G7891A", - "A7894G", - "T7897A", - "A7900C", - "G7903A", - "A7906G", - "A7924G", - "T7925C", - "T7948C", - "A7975G", - "C7984T", - "A7987C", - "C7990A", - "A7993G", - "A8002G", - "C8011T", - "T8020C", - "A8026G", - "C8032A", - "C8044A", - "C8053T", - "G8062C", - "A8077G", - "G8089A", - "T8098C", - "C8101A", - "A8107G", - "G8116C", - "A8119G", - "T8128C", - "C8149A", - "T8158C", - "C8173T", - "G8182A", - "G8185A", - "A8191G", - "C8203T", - "G8206A", - "G8209A", - "G8224A", - "C8242T", - "T8257C", - "C8272T", - "T8281C", - "T8287C", - "A8290G", - "T8293C", - "A8305G", - "C8318T", - "A8326G", - "T8338C", - "A8344G", - "C8353T", - "A8356G", - "T8368G", - "T8377C", - "A8389T", - "A8392T", - "T8407C", - "T8419C", - "C8422T", - "G8425A", - "A8446C", - "C8452T", - "T8476G", - "T8488C", - "G8509T", - "C8515T", - "C8522T", - "T8533C", - "T8536C", - "G8539A", - "G8542A", - "C8545T", - "A8554G", - "G8560A", - "G8569A", - "G8584A", - "T8596C", - "A8599G", - "G8605A", - "G8621A", - "T8635G", - "T8638C", - "C8641T", - "T8653C", - "C8659T", - "G8665A", - "C8695T", - "C8699A", - "G8716A", - "T8725A", - "C8726T", - "G8728A", - "C8731T", - "T8732C", - "C8734T", - "T8744C", - "G8764A", - "A8781C", - "C8785A", - "A8792G", - "G8797C", - "T8798C", - "A8800G", - "T8803C", - "A8806G", - "T8824C", - "C8830G", - "C8836T", - "T8848C", - "T8851C", - "C8860T", - "C8863A", - "A8878C", - "C8890T", - "T8926C", - "A8935G", - "T8956C", - "A8959G", - "C8992T", - "A8995G", - "G9007A", - "G9018A", - "T9025C", - "T9034C", - "C9037A", - "G9040A", - "A9041C", - "A9042G", - "T9052G", - "C9079T", - "G9085A", - "C9088T", - "C9103T", - "G9112A", - "T9115C", - "G9116T", - "C9121T", - "G9127A", - "T9133A", - "T9136G", - "A9145G", - "T9148C", - "G9157A", - "A9164G", - "C9166T", - "C9175T", - "G9179C", - "A9181C", - "A9182G", - "C9196T", - "C9199T", - "G9202A", - "G9216A", - "G9233A", - "C9242A", - "C9250T", - "G9259A", - "T9262C", - "A9274G", - "A9289G", - "G9298A", - "G9304C", - "C9310T", - "T9331C", - "A9334G", - "C9340T", - "G9346T", - "T9361C", - "G9367A", - "G9370A", - "C9371T", - "T9403C", - "G9410A", - "T9412C", - "T9416C", - "T9422C", - "A9430G", - "A9431C", - "G9433T", - "C9442G", - "T9454C", - "C9457T", - "C9458T", - "A9459C", - "T9466C", - "T9479C", - "T9511C", - "A9512C", - "A9514T", - "A9523G", - "A9529G", - "C9533A", - "A9534G", - "A9535C", - "A9546T", - "G9550A", - "C9562T", - "T9577C", - "A9583T", - "G9586A", - "C9592T", - "A9598T", - "A9607T", - "G9613A", - "C9614T", - "G9625A", - "G9628A", - "T9637C", - "C9655G", - "G9664C", - "C9688G", - "A9691C", - "G9694A", - "T9703C", - "A9712C", - "C9721A", - "A9736G", - "C9748A", - "T9752C", - "T9757C", - "C9763T", - "G9766A", - "C9767T", - "G9775A", - "T9778C", - "G9783A", - "T9785C", - "G9787A", - "C9805A", - "T9808A", - "C9811T", - "G9817A", - "G9829A", - "A9847G", - "A9850T", - "C9851T", - "T9856C", - "G9898C", - "G9925A", - "T9934G", - "G9943A", - "C9946T", - "G9961T", - "G9990A", - "G10012A", - "C10015T", - "G10018A", - "G10030A", - "C10032T", - "C10051A", - "C10057T", - "A10061C", - "A10075G", - "C10093G", - "G10111A", - "A10114C", - "T10117C", - "G10126A", - "C10129T", - "G10135A", - "C10138T", - "C10141T", - "A10156G", - "A10162G", - "T10168C", - "T10180C", - "A10193T", - "G10195C", - "A10201G", - "C10204T", - "T10207A", - "T10216C", - "G10219A", - "C10222A", - "G10231A", - "C10234T", - "T10261C", - "A10270G", - "C10285T", - "C10288T", - "A10294G", - "T10312C", - "A10313C", - "A10324G", - "G10327T", - "A10330G", - "T10333A", - "C10342T", - "T10351C", - "C10354T", - "T10357C", - "C10358T", - "G10372A", - "A10378C", - "A10384G", - "C10396T", - "G10399A", - "C10402T", - "T10408A", - "T10411C", - "A10414G", - "G10423C", - "T10426C", - "T10429C", - "A10432T", - "T10447C", - "A10450G", - "T10459C", - "C10462T", - "C10468T", - "A10474T", - "A10480G", - "G10483A", - "T10486C", - "T10498G", - "T10504C", - "A10516G", - "T10519C", - "T10522C", - "A10528G", - "G10534C", - "C10540T", - "C10555T", - "T10561C", - "C10564T", - "C10567T", - "T10576C", - "T10582A", - "G10594A", - "G10597A", - "T10600C", - "A10603G", - "C10624T", - "C10627A", - "T10636C", - "C10642T", - "C10645T", - "G10651T", - "T10654C", - "C10672A", - "C10675T", - "G10676A", - "C10687T", - "C10693A", - "A10696G", - "T10702G", - "G10714C", - "T10717A", - "T10720C", - "G10723A", - "G10726A", - "A10741G", - "A10744T", - "T10768C", - "T10771C", - "G10774A", - "A10781G", - "A10789C", - "T10792C", - "C10795T", - "T10804C", - "G10807A", - "A10825C", - "T10828A", - "A10831G", - "A10834T", - "T10861C", - "T10886C", - "G10892A", - "T10894C", - "T10906A", - "T10907C", - "T10912C", - "C10924T", - "A10927G", - "T10936C", - "C10954T", - "T10960C", - "G10963A", - "A10981G", - "A10987C", - "C11008A", - "C11014T", - "T11028C", - "C11029T", - "A11032T", - "T11035C", - "G11039A", - "T11040C", - "C11041A", - "A11044G", - "T11054C", - "C11077T", - "A11098G", - "A11119T", - "A11131G", - "T11134C", - "C11155T", - "C11161A", - "A11165T", - "C11182T", - "A11191G", - "A11197G", - "G11200A", - "G11218A", - "G11224A", - "A11230G", - "C11239T", - "T11263C", - "G11278A", - "A11284G", - "T11293C", - "T11296C", - "C11302T", - "C11306T", - "A11325G", - "T11326C", - "C11332T", - "A11340G", - "A11358G", - "T11359C", - "G11360A", - "A11363T", - "C11364A", - "T11386C", - "A11387G", - "T11388C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C3122T", - "C4070T", - "A5765T", - "T8962C", - "C10357T", - "T10648C", - "C10894T" - ] - } - }, - "name": "MH086245.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.2321585041180981, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1999.0013698630137, - 1999.898904109589 - ], - "value": 1999.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1999": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP4: Q278A" - }, - "mutations": { - "nsP4": [ - "Q278A" - ], - "nuc": [ - "C6534G", - "A6535C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "MH086248.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.2329557341180981, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1999.0013698630137, - 1999.898904109589 - ], - "value": 1999.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1999": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S356R" - }, - "mutations": { - "nsP3": [ - "S356R" - ], - "nuc": [ - "C1160T", - "T1991C", - "T2507C", - "T5099A", - "C6294T", - "G6821A", - "C8743T", - "C9874T", - "C10177T", - "T10402C", - "C10912T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2204T", - "T10366C", - "T10951C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T2222A", - "C3821T", - "T4838C", - "A5162G", - "C5504G", - "A6593G", - "T6635C", - "T6680C", - "C8239T", - "C8483T", - "C9343T", - "G9529T", - "A10078G", - "C10894T" - ] - } - }, - "name": "MH086249.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.2354457741180981, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1999.0013698630137, - 1999.898904109589 - ], - "value": 1999.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1999": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: T17I; E2: T297A; nsP4: P104S, I256V" - }, - "mutations": { - "E1": [ - "T17I" - ], - "E2": [ - "T297A" - ], - "nsP4": [ - "P104S", - "I256V" - ], - "nuc": [ - "T1502C", - "T3008C", - "C5285T", - "C6012T", - "A6468G", - "A9452G", - "C10050T", - "A10066T", - "T10225C", - "C10576T" - ] - } - }, - "name": "MH086247.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.23508766411809812, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1998.0764491837826, - 1998.466908321152 - ], - "value": 1998.2418438621846 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1998": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1998" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000092", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999916853719 - }, - "entropy": 1.7389067658103177e-7, - "value": "Peru" - }, - "div": 0.23419823411809812, - "num_date": { - "confidence": [ - 1997.9092839691423, - 1998.2455809906016 - ], - "value": 1998.0575304289905 - }, - "region": { - "confidence": { - "LA,C": 0.9999999998734314 - }, - "entropy": 3.0620995133495414e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.01671399922559917, - "1998": 0.048908368848026046, - "1999": 0.9311939759446209 - }, - "entropy": 0.31265448516939925, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: H617Y; nsP3: V156I" - }, - "mutations": { - "nsP2": [ - "H617Y" - ], - "nsP3": [ - "V156I" - ], - "nuc": [ - "A1310G", - "C3498T", - "C3710T", - "A3743C", - "G4497A", - "A6581G", - "C7247T", - "G7286A", - "C10147T", - "A10207G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: A375T; nsP3: A190V; nsP4: N234D" - }, - "mutations": { - "E2": [ - "A375T" - ], - "nsP3": [ - "A190V" - ], - "nsP4": [ - "N234D" - ], - "nuc": [ - "A662G", - "C4600T", - "G6200A", - "C6380T", - "A6402G", - "T8011C", - "G8809A", - "G9686A", - "C9742T" - ] - } - }, - "name": "MH086246.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23562246411809812, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1997.9612667934766, - 1997.9986301369863 - ], - "value": 1997.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: L165F; E1: L120M; nsP4: A278Q" - }, - "mutations": { - "CP": [ - "L165F" - ], - "E1": [ - "L120M" - ], - "nsP4": [ - "A278Q" - ], - "nuc": [ - "C4409T", - "A4883G", - "A5162G", - "T6227C", - "G6534C", - "C6535A", - "C6788T", - "C7295T", - "C8054T", - "G8086A", - "T8794C", - "T10358A", - "C11134T", - "T11443A", - "C11444A" - ] - } - }, - "name": "MH086244.1", - "node_attrs": { - "author": { - "author": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F.", - "value": "Padilla,S.L., Prieto,K., Haddow,A.D., Watts,D.M., Klein,T.A., Turell,M.J., Lowen,R.G., Palacios,G.F., Pitt,M.L., Wiley,M.R. and Nasar,F." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23615741411809812, - "host": { - "value": "Culex gnomatos" - }, - "num_date": { - "confidence": [ - 1997.976719851019, - 1997.9986301369863 - ], - "value": 1997.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IIID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000093", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999983102721 - }, - "entropy": 3.8009781081265506e-8, - "value": "Peru" - }, - "div": 0.23482235411809813, - "num_date": { - "confidence": [ - 1997.8547528144202, - 1997.9325808878555 - ], - "value": 1997.8962025617905 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741671 - }, - "entropy": 6.637673345436086e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.9958517543763966, - "1999": 0.0039101424557666025 - }, - "entropy": 0.028638661826438417, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000091", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999982048264 - }, - "entropy": 4.024950011510929e-8, - "value": "Peru" - }, - "div": 0.23393224411809813, - "num_date": { - "confidence": [ - 1997.7928847211483, - 1997.893245656202 - ], - "value": 1997.8498454291764 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999730514 - }, - "entropy": 6.913984278589542e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.03865428874780004, - "1998": 0.013569433776695918, - "1999": 0.9456095764824454 - }, - "entropy": 0.25837032326637666, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000090", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999623718778 - }, - "entropy": 7.236332096094035e-7, - "value": "Peru" - }, - "div": 0.23295366411809812, - "num_date": { - "confidence": [ - 1997.712549420626, - 1997.832920213594 - ], - "value": 1997.7771975280525 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997586997 - }, - "entropy": 5.678387194707275e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.008214029977826205, - "1998": 0.0027832530774533778, - "1999": 0.9879031509016902 - }, - "entropy": 0.07945642161283142, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000089", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999938707264396 - }, - "entropy": 0.0000905341628686567, - "value": "Peru" - }, - "div": 0.23215589411809812, - "num_date": { - "confidence": [ - 1997.6063724879828, - 1997.7647070224548 - ], - "value": 1997.6886306552592 - }, - "region": { - "confidence": { - "LA,C": 0.9999999586546521 - }, - "entropy": 7.621186898362562e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.006944111196847906, - "1998": 0.002428441830016821, - "1999": 0.9866361007332057 - }, - "entropy": 0.0995473875092214, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000088", - "node_attrs": { - "country": { - "confidence": { - "Argentina": 0.023678071061943105, - "Colombia": 0.03524556348206144, - "Panama": 0.009980888336088196, - "Peru": 0.8773603440022856 - }, - "entropy": 0.6472240593421197, - "value": "Peru" - }, - "div": 0.13016504411809812, - "num_date": { - "confidence": [ - 1947.3101658774651, - 1951.2481621924455 - ], - "value": 1949.1397790035169 - }, - "region": { - "confidence": { - "LA,C": 0.9999257419286595 - }, - "entropy": 0.0008097697687239263, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.021511319159887417, - "1997": 0.022186970956457955, - "2000": 0.021445983350862216, - "2018": 0.021927348629104722 - }, - "entropy": 3.8709144116471306, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000087", - "node_attrs": { - "country": { - "confidence": { - "Argentina": 0.07260755279165235, - "Colombia": 0.07155646824382644, - "Panama": 0.02515593148223734, - "Peru": 0.6825950906372497 - }, - "entropy": 1.354828357508171, - "value": "Peru" - }, - "div": 0.08086134411809813, - "num_date": { - "confidence": [ - 1936.8831745689133, - 1941.985473621618 - ], - "value": 1939.2468975641411 - }, - "region": { - "confidence": { - "LA,C": 0.9997412822477825 - }, - "entropy": 0.002504888066560615, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.021511297370719495, - "1997": 0.02218706720488181, - "2000": 0.021446049682279138, - "2018": 0.021927387676660703 - }, - "entropy": 3.870914405858994, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000084", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.3445619921287702, - "Mexico": 0.0509830061209724, - "Panama": 0.09971135310156215, - "Peru": 0.16599577946113642 - }, - "entropy": 2.1878777004766214, - "value": "Colombia" - }, - "div": 0.0065727541180981295, - "num_date": { - "confidence": [ - 1865.6688913353942, - 1871.5826956285641 - ], - "value": 1869.0525402096694 - }, - "region": { - "confidence": { - "AUSNZ": 0.0024373968390882486, - "LA,C": 0.9971234844165154 - }, - "entropy": 0.020932477035854873, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.021511296950122223, - "1997": 0.022187067618667056, - "2000": 0.021446049871480244, - "2018": 0.02192738783689557 - }, - "entropy": 3.8709144057954683, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: N13H, I20S, V32A, A52V; CP: Y15F, A56V, R68K, E69D, A70T, P71S, K73Q, E74G, N75G, G77N, K84N, N85K, Q86L, G87V, H97P, Q101N, N104G, A108V, M151L, A163S, A164S, M257T, C272S; E1: S9N, A11V, T32V, I36V, T82S, V103I, M109T, D112E, L115V, A116T, E139G, T144A, I145V, T171S, R175K, L213V, F240Y, N360S, T397S, V419I; E2: K37R, D39E, S57P, L84V, D117E, Q152H, T194Q, T213S, F217Y, T221S, D224A, L231T, D249E, L260V, A262T, M275I, Y294F, H305A, S312T, E313N, A315V, T320S, F338Y, A340S, I380T, V382I, T386V, V394I; E3: A32S, V36H, V38I, K57G; nsP1: Y94F, A121E, S140T, Y143F, Y232F, H475P, K476V, E477D, P478R, S479P, E485D, A514S, T521A; nsP2: S39T, H75Q, K121R, T122V, D129E, T148S, K335R, E336D, T337S, R419K, I446M, T506E, K560H, A578T, H613Q, T615A, E616D, H619P, T642N, V643I, P644S, R654T, E656D, G669N, P684Q, K686R, I736V, L752K, Y764F, A768T; nsP3: I20V, G31S, K39R, F41Y, A61N, A62S, V96I, M150V, T174A, I227T, E332D, T333A, P334T, V336A, E337D, E350N, T352A, P353A, Q355P, A357T, L358R, T360A, V361A, D362A, A363G, T364R, R365E, R367*, T368E, P369H, E370G, P371T, I372T, I373V, E376V, M384V, G388D, P389A, T390P, D399E, G402R, P403S, P404A, S405Q, F407L, H415R, D422E, D428E, T429S, E431G, G432A, A433N, S434D, I435T, T436I, K438M, A439E, A440S, A442S, E443K, T444N, N445S, Y447C, S451G, V465I, N468T, T476A, T478R, S480L, R515P, A516L, P517S, A521S; nsP4: E43N, L47I, R78K, A90S, A126V, S176A, E242K, N275D, V286I, C365W, K422R, I443M, A537V, H550Q, T554A, P563S, S579A, I580V, T604S" - }, - "mutations": { - "6k": [ - "N13H", - "I20S", - "V32A", - "A52V" - ], - "CP": [ - "Y15F", - "A56V", - "R68K", - "E69D", - "A70T", - "P71S", - "K73Q", - "E74G", - "N75G", - "G77N", - "K84N", - "N85K", - "Q86L", - "G87V", - "H97P", - "Q101N", - "N104G", - "A108V", - "M151L", - "A163S", - "A164S", - "M257T", - "C272S" - ], - "E1": [ - "S9N", - "A11V", - "T32V", - "I36V", - "T82S", - "V103I", - "M109T", - "D112E", - "L115V", - "A116T", - "E139G", - "T144A", - "I145V", - "T171S", - "R175K", - "L213V", - "F240Y", - "N360S", - "T397S", - "V419I" - ], - "E2": [ - "K37R", - "D39E", - "S57P", - "L84V", - "D117E", - "Q152H", - "T194Q", - "T213S", - "F217Y", - "T221S", - "D224A", - "L231T", - "D249E", - "L260V", - "A262T", - "M275I", - "Y294F", - "H305A", - "S312T", - "E313N", - "A315V", - "T320S", - "F338Y", - "A340S", - "I380T", - "V382I", - "T386V", - "V394I" - ], - "E3": [ - "A32S", - "V36H", - "V38I", - "K57G" - ], - "nsP1": [ - "Y94F", - "A121E", - "S140T", - "Y143F", - "Y232F", - "H475P", - "K476V", - "E477D", - "P478R", - "S479P", - "E485D", - "A514S", - "T521A" - ], - "nsP2": [ - "S39T", - "H75Q", - "K121R", - "T122V", - "D129E", - "T148S", - "K335R", - "E336D", - "T337S", - "R419K", - "I446M", - "T506E", - "K560H", - "A578T", - "H613Q", - "T615A", - "E616D", - "H619P", - "T642N", - "V643I", - "P644S", - "R654T", - "E656D", - "G669N", - "P684Q", - "K686R", - "I736V", - "L752K", - "Y764F", - "A768T" - ], - "nsP3": [ - "I20V", - "G31S", - "K39R", - "F41Y", - "A61N", - "A62S", - "V96I", - "M150V", - "T174A", - "I227T", - "E332D", - "T333A", - "P334T", - "V336A", - "E337D", - "E350N", - "T352A", - "P353A", - "Q355P", - "A357T", - "L358R", - "T360A", - "V361A", - "D362A", - "A363G", - "T364R", - "R365E", - "R367*", - "T368E", - "P369H", - "E370G", - "P371T", - "I372T", - "I373V", - "E376V", - "M384V", - "G388D", - "P389A", - "T390P", - "D399E", - "G402R", - "P403S", - "P404A", - "S405Q", - "F407L", - "H415R", - "D422E", - "D428E", - "T429S", - "E431G", - "G432A", - "A433N", - "S434D", - "I435T", - "T436I", - "K438M", - "A439E", - "A440S", - "A442S", - "E443K", - "T444N", - "N445S", - "Y447C", - "S451G", - "V465I", - "N468T", - "T476A", - "T478R", - "S480L", - "R515P", - "A516L", - "P517S", - "A521S" - ], - "nsP4": [ - "E43N", - "L47I", - "R78K", - "A90S", - "A126V", - "S176A", - "E242K", - "N275D", - "V286I", - "C365W", - "K422R", - "I443M", - "A537V", - "H550Q", - "T554A", - "P563S", - "S579A", - "I580V", - "T604S" - ], - "nuc": [ - "C36G", - "C77T", - "T95A", - "G98A", - "T143G", - "C180T", - "T185A", - "C192T", - "C248T", - "G275A", - "T278C", - "T281C", - "G305A", - "T321C", - "A325T", - "C326T", - "T338C", - "A350G", - "C356T", - "G359A", - "A362G", - "C365T", - "C371T", - "C401T", - "A404G", - "C406A", - "C407A", - "G428C", - "G437A", - "T440G", - "C449T", - "C458T", - "G461A", - "T462A", - "G464C", - "C470A", - "A472T", - "A476G", - "G479T", - "T488A", - "T491G", - "C494T", - "A503G", - "A509G", - "A524G", - "T527C", - "A539G", - "G548A", - "A551G", - "C566T", - "C575A", - "C584T", - "T590C", - "T593C", - "T599C", - "A623C", - "C629T", - "T632G", - "C678T", - "A680G", - "T695G", - "A739T", - "C762T", - "A764G", - "G773A", - "C776A", - "A798C", - "G800A", - "G809C", - "T830C", - "A833T", - "T840C", - "C848T", - "A854G", - "A863T", - "T905C", - "A911G", - "C920T", - "C929T", - "C968T", - "A992G", - "A998G", - "A1004G", - "G1034A", - "T1043C", - "A1049G", - "T1052C", - "T1073A", - "A1079T", - "G1100A", - "A1112G", - "C1139A", - "G1148A", - "C1160T", - "A1166G", - "C1178A", - "T1187C", - "C1191T", - "A1202C", - "C1208A", - "G1211A", - "G1223A", - "A1229T", - "G1241A", - "C1266T", - "A1274T", - "A1277G", - "T1280C", - "A1283C", - "C1301T", - "T1310G", - "T1313C", - "G1319A", - "T1334A", - "C1346A", - "T1352C", - "C1361G", - "A1370G", - "G1373A", - "A1409T", - "C1412G", - "T1415C", - "A1421C", - "A1439G", - "A1445G", - "T1455C", - "A1463G", - "G1466A", - "A1468C", - "C1469T", - "A1470G", - "A1471T", - "A1475C", - "C1477G", - "T1479C", - "T1484C", - "A1499C", - "T1514C", - "A1523G", - "C1526G", - "G1541A", - "G1556A", - "T1560C", - "G1562C", - "C1563A", - "C1565G", - "T1580G", - "G1584T", - "T1589C", - "T1595A", - "C1604T", - "A1605G", - "T1607A", - "A1613G", - "C1616A", - "T1619C", - "C1622T", - "G1628A", - "T1632C", - "G1646A", - "A1649G", - "C1652A", - "C1655T", - "A1658C", - "G1661A", - "A1664C", - "T1667C", - "C1668A", - "T1674C", - "G1676C", - "C1697A", - "C1700A", - "G1703A", - "T1730C", - "T1742A", - "C1748G", - "G1757A", - "A1763G", - "T1764A", - "T1766A", - "T1784A", - "C1793A", - "G1799A", - "C1814G", - "A1820G", - "G1823T", - "C1824A", - "T1826A", - "T1829C", - "C1832A", - "G1835A", - "T1847C", - "A1856G", - "G1859A", - "G1862A", - "T1874A", - "A1877T", - "G1889A", - "T1913C", - "C1919A", - "A1937C", - "C1955T", - "C1956T", - "G1958A", - "A1973G", - "A1979T", - "G1985T", - "A2000G", - "A2011G", - "A2013G", - "C2014T", - "C2018G", - "C2027T", - "C2036A", - "A2042G", - "G2048A", - "C2057T", - "C2072T", - "C2075T", - "A2087G", - "C2090T", - "A2091T", - "T2093G", - "C2103T", - "C2111A", - "G2114A", - "G2117T", - "G2120C", - "T2126C", - "C2141T", - "G2144A", - "C2154T", - "A2159G", - "A2165C", - "G2168A", - "G2198T", - "T2204C", - "G2210T", - "A2213C", - "A2216G", - "A2219C", - "C2222G", - "C2231A", - "C2234T", - "T2237C", - "A2240G", - "C2252T", - "A2255G", - "T2261C", - "C2262T", - "G2267A", - "C2273T", - "C2276T", - "A2282G", - "C2291T", - "A2294C", - "A2297G", - "A2318G", - "A2345G", - "T2348A", - "G2366A", - "A2384G", - "T2387C", - "C2393T", - "C2394T", - "T2411C", - "T2420C", - "T2423C", - "A2426T", - "A2438G", - "G2441C", - "G2444A", - "C2453T", - "A2457C", - "T2462C", - "G2468A", - "C2480T", - "G2483T", - "G2495A", - "C2498T", - "C2507T", - "T2510C", - "C2520T", - "T2531C", - "T2534C", - "T2546A", - "G2552T", - "C2573A", - "C2585T", - "T2588C", - "A2591G", - "T2594A", - "T2600G", - "C2606A", - "C2615A", - "C2624T", - "C2645T", - "G2651A", - "A2653G", - "G2657T", - "A2658T", - "T2660C", - "G2663A", - "T2678A", - "C2684A", - "C2690T", - "G2699A", - "C2705T", - "T2708C", - "C2709T", - "C2711G", - "T2720A", - "A2729G", - "G2732A", - "A2738T", - "G2744A", - "T2756C", - "C2765A", - "G2780C", - "A2783G", - "T2792A", - "A2795G", - "C2799T", - "C2804G", - "C2813T", - "C2822A", - "T2846C", - "C2850T", - "A2870G", - "C2882G", - "C2886T", - "G2900A", - "C2904A", - "G2905A", - "C2909T", - "A2918G", - "A2924T", - "C2930G", - "A2936G", - "G2954C", - "T2966C", - "T2978C", - "C2981A", - "G2984A", - "A2987G", - "A2999G", - "T3008C", - "G3023A", - "T3030C", - "C3044T", - "T3047C", - "C3050G", - "C3053T", - "G3071T", - "C3074T", - "G3077T", - "C3086A", - "T3092A", - "T3093C", - "A3095T", - "G3098A", - "A3104G", - "G3107T", - "T3113C", - "C3119G", - "C3125T", - "A3137G", - "A3140G", - "T3149A", - "T3158C", - "A3165G", - "C3166A", - "C3170T", - "T3176C", - "A3185T", - "A3191C", - "A3194T", - "T3195C", - "C3200T", - "A3203G", - "G3215A", - "T3221C", - "A3224C", - "G3233A", - "C3236T", - "C3243T", - "A3245G", - "T3251C", - "T3267C", - "A3269C", - "T3281C", - "T3284C", - "C3287T", - "C3299A", - "T3308C", - "C3321T", - "A3327C", - "A3329T", - "C3339A", - "G3344A", - "C3347A", - "A3362T", - "G3368A", - "T3371G", - "A3374T", - "G3381A", - "A3389G", - "C3395A", - "T3398C", - "T3410C", - "C3413T", - "A3416T", - "C3444T", - "T3452G", - "A3459C", - "A3461T", - "A3462C", - "A3464C", - "T3470A", - "T3477C", - "A3479C", - "C3482G", - "C3485G", - "C3488A", - "A3492G", - "A3497C", - "C3500T", - "A3503C", - "A3505C", - "T3506C", - "T3518C", - "A3521C", - "C3524T", - "A3533G", - "G3536T", - "T3548G", - "G3554A", - "G3557A", - "C3560T", - "G3563T", - "C3574A", - "C3575T", - "G3576A", - "C3578T", - "C3579T", - "C3584T", - "T3593A", - "G3602A", - "C3605T", - "C3609A", - "G3610C", - "G3611A", - "G3617T", - "C3623T", - "A3629G", - "T3632G", - "G3638A", - "T3647C", - "C3650A", - "A3653C", - "G3654A", - "G3655A", - "C3665G", - "C3674T", - "A3680C", - "T3683C", - "T3686A", - "G3692A", - "G3695A", - "C3700A", - "T3704C", - "A3705C", - "A3706G", - "A3707C", - "T3716C", - "T3719C", - "A3731G", - "C3747T", - "T3749G", - "C3761T", - "A3767G", - "T3770C", - "T3773C", - "C3791A", - "C3797T", - "C3800T", - "C3803A", - "A3809T", - "T3818C", - "A3824G", - "A3828C", - "A3855G", - "A3857T", - "G3860T", - "C3878A", - "G3893A", - "A3899G", - "A3902T", - "C3903A", - "T3904A", - "A3908G", - "A3914C", - "G3923A", - "A3929C", - "A3940T", - "G3950A", - "G3951A", - "C3953A", - "T3956A", - "C3962T", - "T3968A", - "T3983C", - "T4001C", - "A4004C", - "C4010G", - "A4013G", - "C4019T", - "A4028C", - "G4049A", - "A4055C", - "T4064A", - "G4085A", - "A4089G", - "T4100C", - "A4109G", - "A4115G", - "G4122A", - "A4124T", - "G4127A", - "A4146C", - "A4147G", - "A4151G", - "T4153A", - "G4157C", - "G4175A", - "C4181A", - "A4190G", - "G4196T", - "C4197A", - "C4200T", - "G4212A", - "C4213A", - "A4214C", - "G4215T", - "C4244G", - "C4247T", - "A4262C", - "G4292A", - "G4301A", - "C4304T", - "C4307A", - "A4313G", - "G4317A", - "A4340T", - "G4346T", - "G4355T", - "C4364T", - "C4367A", - "G4379A", - "C4389A", - "A4391G", - "C4392T", - "A4403C", - "T4413C", - "G4418A", - "A4421G", - "T4424A", - "C4433A", - "T4436C", - "A4479G", - "T4484G", - "C4487G", - "G4490A", - "A4493G", - "A4496C", - "G4499A", - "T4502C", - "A4514G", - "G4517A", - "C4529T", - "A4532C", - "C4541T", - "T4544C", - "G4550A", - "A4551G", - "A4556G", - "G4577A", - "G4580A", - "G4586A", - "A4622C", - "A4631G", - "G4649T", - "G4655A", - "T4682C", - "C4700T", - "T4711C", - "T4712C", - "A4715T", - "G4718A", - "A4733G", - "A4736G", - "G4742A", - "T4745C", - "C4748T", - "A4754G", - "C4769T", - "T4772A", - "G4775A", - "C4790T", - "A4793G", - "G4796A", - "G4799A", - "A4802G", - "A4811C", - "T4817A", - "C4820T", - "T4844C", - "T4853C", - "A4856G", - "A4862G", - "A4865C", - "C4871T", - "C4872T", - "A4874G", - "A4883T", - "T4886C", - "A4889C", - "G4904T", - "C4907T", - "A4910T", - "T4916C", - "C4937A", - "T4940A", - "T4943A", - "C4955T", - "C4964G", - "C4967T", - "G4976T", - "G4985T", - "G4988A", - "C5000T", - "T5003A", - "C5010A", - "G5012A", - "C5021T", - "G5024A", - "A5027C", - "A5028G", - "C5031A", - "A5033T", - "G5036C", - "T5038C", - "A5039G", - "A5042C", - "G5079A", - "G5081T", - "A5085G", - "C5088G", - "T5090C", - "A5095C", - "G5100A", - "T5104G", - "A5109G", - "T5113C", - "A5116C", - "C5119G", - "C5122G", - "A5124G", - "G5125A", - "T5129C", - "A5130T", - "A5133G", - "C5134A", - "C5137A", - "T5138C", - "A5140G", - "C5142A", - "G5144A", - "T5146C", - "A5148G", - "A5158T", - "A5162G", - "A5181G", - "A5189C", - "A5192G", - "G5194A", - "C5196G", - "G5198A", - "A5199C", - "G5201A", - "C5228A", - "A5231G", - "G5235C", - "A5237C", - "C5238T", - "C5241G", - "T5243G", - "T5244C", - "C5245A", - "G5246A", - "A5249G", - "T5250C", - "A5258G", - "A5275G", - "G5294C", - "C5297G", - "T5301C", - "A5303C", - "T5312C", - "C5315A", - "A5316T", - "A5323G", - "G5324T", - "G5326C", - "A5327C", - "G5328A", - "C5329A", - "A5331G", - "G5332A", - "T5335C", - "C5338T", - "A5344T", - "C5347A", - "A5348G", - "G5349T", - "A5354C", - "G5355T", - "G5358A", - "G5360A", - "C5362A", - "T5363C", - "A5365G", - "A5371G", - "C5375T", - "A5378G", - "A5382G", - "C5384G", - "T5393C", - "G5399T", - "G5408T", - "T5411C", - "T5417G", - "G5424A", - "A5434C", - "C5435T", - "T5444C", - "C5456T", - "A5457G", - "A5459G", - "A5460C", - "C5464G", - "G5468A", - "C5470T", - "T5474C", - "G5575C", - "G5577T", - "C5578T", - "T5579G", - "C5580T", - "G5588A", - "G5592A", - "C5593G", - "A5597G", - "A5598C", - "A5600C", - "C5618T", - "G5621A", - "A5624G", - "C5627T", - "A5630C", - "T5633C", - "A5634C", - "G5636A", - "G5651A", - "A5672C", - "T5690C", - "C5708T", - "T5711C", - "C5717G", - "C5723T", - "G5732A", - "A5738G", - "A5759G", - "A5768G", - "T5781C", - "G5783A", - "G5798A", - "T5804C", - "A5828G", - "G5829A", - "A5831C", - "A5840G", - "C5841A", - "A5846G", - "C5847A", - "C5849A", - "A5855G", - "C5862T", - "C5870T", - "A5873G", - "A5883C", - "A5885G", - "C5888T", - "C5894T", - "A5901C", - "G5909T", - "G5912A", - "A5921G", - "G5935A", - "A5936G", - "C5943T", - "G5945A", - "A5948G", - "C5951A", - "C5952T", - "G5957T", - "T5960C", - "G5970T", - "A5978T", - "A5981G", - "C5999G", - "T6026A", - "C6036A", - "T6044C", - "A6047C", - "C6050T", - "G6056A", - "C6059T", - "A6062T", - "G6065C", - "C6071A", - "C6077T", - "C6079T", - "G6083T", - "A6089G", - "C6095T", - "T6104A", - "T6119C", - "T6125A", - "A6128T", - "T6164A", - "T6167A", - "A6176G", - "C6179T", - "T6182A", - "C6185G", - "A6200C", - "C6204T", - "C6209T", - "T6228G", - "T6233C", - "T6234C", - "G6236C", - "A6239G", - "G6254T", - "G6260T", - "G6269A", - "C6290T", - "G6296C", - "A6311G", - "C6326G", - "G6329T", - "C6347T", - "C6359T", - "T6362G", - "T6368C", - "C6380T", - "C6383T", - "G6386A", - "T6392C", - "G6395T", - "A6407G", - "T6410C", - "A6416G", - "G6419C", - "A6425G", - "G6426A", - "A6428G", - "C6431T", - "C6434T", - "C6437T", - "A6443G", - "T6446C", - "T6461C", - "T6464C", - "T6470A", - "A6485G", - "A6491G", - "G6524A", - "A6525G", - "A6533G", - "G6536A", - "G6558A", - "G6575A", - "C6578T", - "G6581C", - "A6584G", - "A6602G", - "T6605C", - "T6608C", - "C6615A", - "C6620T", - "A6626C", - "G6629A", - "G6632A", - "C6644A", - "G6650A", - "C6651T", - "A6653G", - "A6659G", - "G6662T", - "G6668A", - "C6671T", - "A6674G", - "C6677T", - "C6681A", - "T6692G", - "G6695C", - "T6699C", - "A6701G", - "C6710T", - "C6714T", - "T6716A", - "G6719T", - "C6725A", - "C6732T", - "G6734A", - "G6746T", - "A6752G", - "C6755T", - "T6764C", - "T6767A", - "T6779C", - "T6788A", - "G6791C", - "C6794T", - "T6797G", - "T6800G", - "C6801T", - "G6803A", - "A6806G", - "T6809C", - "T6815A", - "G6821C", - "G6836A", - "A6863G", - "T6869C", - "T6878C", - "A6881C", - "T6884G", - "G6905C", - "T6911C", - "T6920A", - "A6935C", - "A6938C", - "C6941T", - "C6950A", - "A6967G", - "A6968G", - "C6971T", - "C6989A", - "C7001G", - "G7013C", - "A7019C", - "C7022G", - "C7031G", - "C7037A", - "A7040C", - "G7049T", - "A7052G", - "A7055G", - "C7059A", - "G7061A", - "C7067A", - "A7073C", - "A7076T", - "A7082C", - "A7085G", - "A7094C", - "T7097C", - "T7103C", - "A7115G", - "C7118T", - "A7121G", - "G7124T", - "T7131C", - "A7133C", - "C7151T", - "T7158C", - "A7181C", - "T7184C", - "C7187A", - "A7220T", - "G7232A", - "C7241T", - "C7250A", - "C7259T", - "A7268G", - "C7274T", - "C7275T", - "A7277G", - "A7280G", - "G7283A", - "C7284T", - "G7286A", - "T7289C", - "A7310T", - "C7312T", - "A7313G", - "C7316T", - "A7338C", - "C7352A", - "G7358A", - "A7361C", - "A7362G", - "A7364C", - "C7367G", - "A7376G", - "C7389T", - "A7391C", - "C7395T", - "G7403A", - "A7406C", - "A7409C", - "A7412G", - "A7415G", - "A7416C", - "G7418A", - "C7427A", - "A7430G", - "A7433C", - "T7436G", - "T7437G", - "A7440G", - "A7445C", - "T7448C", - "T7463G", - "A7466C", - "T7469C", - "A7481G", - "A7484G", - "C7490T", - "A7512T", - "A7544G", - "T7550A", - "G7561A", - "C7567T", - "G7570T", - "C7573T", - "A7597C", - "A7605T", - "T7606C", - "G7615T", - "C7618T", - "C7628A", - "C7645A", - "T7657C", - "G7663A", - "G7678A", - "T7682C", - "C7687A", - "C7688A", - "C7690G", - "T7699C", - "C7703T", - "C7720G", - "G7723A", - "C7726T", - "C7728T", - "T7735C", - "G7741T", - "C7747G", - "A7756G", - "G7764A", - "G7768T", - "G7769A", - "C7772T", - "A7778C", - "A7782G", - "A7783T", - "A7784G", - "A7785G", - "G7790A", - "G7791A", - "A7792T", - "G7801A", - "G7807A", - "G7813T", - "C7816G", - "A7818T", - "G7819A", - "G7821T", - "G7822A", - "G7828A", - "G7840A", - "T7849A", - "A7851C", - "T7852C", - "G7855A", - "C7862A", - "G7864T", - "A7871G", - "A7872G", - "G7876A", - "G7882A", - "C7884T", - "C7888T", - "A7894G", - "A7900G", - "G7909A", - "C7912T", - "A7924G", - "A7930G", - "T7933A", - "T7951C", - "G7957T", - "C7960T", - "C7972T", - "C7975G", - "C7978T", - "T7981A", - "A7993T", - "G7996T", - "A8002G", - "C8005T", - "G8008A", - "G8011A", - "A8012C", - "A8023G", - "T8044G", - "C8045T", - "G8048T", - "G8051T", - "T8056C", - "G8062C", - "A8077G", - "A8095T", - "T8098C", - "A8104G", - "G8116C", - "T8122C", - "G8143A", - "A8152G", - "T8158C", - "C8182A", - "G8197C", - "G8200A", - "G8206A", - "A8212C", - "T8221C", - "G8224A", - "C8242T", - "A8245C", - "G8254T", - "T8257C", - "A8266G", - "G8269T", - "G8287T", - "A8290C", - "T8293A", - "A8305C", - "C8317A", - "C8329G", - "T8331C", - "T8353A", - "G8356C", - "G8359A", - "T8365C", - "T8375A", - "A8383G", - "A8389G", - "A8392G", - "C8401T", - "C8413T", - "A8431G", - "T8434C", - "A8446C", - "A8464G", - "G8480T", - "C8491T", - "G8492C", - "T8493A", - "G8498A", - "T8500A", - "C8506T", - "G8509T", - "C8512T", - "C8515T", - "T8518C", - "C8522T", - "G8527C", - "T8536A", - "G8542A", - "C8545T", - "C8548A", - "A8555G", - "A8556G", - "A8557C", - "A8563G", - "T8566C", - "T8590C", - "G8599A", - "C8632G", - "T8635C", - "G8638A", - "C8641T", - "T8653C", - "T8662A", - "G8671A", - "A8673G", - "C8680A", - "C8686T", - "C8689T", - "T8698A", - "T8704C", - "T8710C", - "C8713A", - "G8716T", - "C8725A", - "C8726T", - "T8732C", - "C8734A", - "A8746G", - "G8749A", - "C8776T", - "G8779A", - "T8785A", - "C8798T", - "A8800G", - "T8803C", - "A8812T", - "C8813G", - "C8815T", - "C8818T", - "A8821C", - "T8824A", - "C8830T", - "T8833C", - "T8839A", - "T8854C", - "G8884A", - "C8893A", - "C8896T", - "T8914A", - "A8923C", - "A8935C", - "T8944C", - "G8950A", - "A8953G", - "A8965G", - "C8968A", - "T8983A", - "C8989A", - "A8995G", - "A9004C", - "G9007A", - "G9013A", - "A9019C", - "A9028T", - "T9031C", - "C9043T", - "A9046G", - "T9055C", - "C9058G", - "C9070T", - "G9073A", - "C9076A", - "C9091T", - "G9097A", - "T9100G", - "C9112T", - "A9118T", - "C9121T", - "C9124T", - "A9130T", - "T9133C", - "T9139C", - "A9143C", - "C9144A", - "G9154A", - "G9166A", - "C9169T", - "C9172T", - "A9178C", - "G9190A", - "C9199T", - "A9200T", - "G9202T", - "A9205T", - "A9208G", - "G9211A", - "T9213A", - "A9224T", - "A9226C", - "A9234C", - "C9254A", - "T9255C", - "G9256A", - "T9283G", - "C9295T", - "C9310A", - "C9313T", - "A9316C", - "A9322C", - "A9334G", - "A9337C", - "T9341G", - "G9347A", - "A9349T", - "C9355A", - "T9370A", - "A9373G", - "A9376C", - "T9385C", - "G9388T", - "A9391C", - "C9397T", - "T9400G", - "A9409T", - "G9424T", - "T9430C", - "A9444T", - "T9454G", - "C9455A", - "C9457G", - "A9460G", - "T9469A", - "C9476G", - "A9477C", - "G9490A", - "T9497A", - "G9500A", - "A9502C", - "C9505T", - "C9507T", - "T9508A", - "T9511G", - "G9514A", - "T9520C", - "A9521T", - "C9523G", - "C9526T", - "A9532G", - "G9538T", - "G9544A", - "C9562T", - "G9568T", - "T9576A", - "T9577C", - "G9581T", - "A9583C", - "A9592T", - "C9598A", - "A9601T", - "T9610C", - "G9613A", - "T9634C", - "T9640C", - "C9643T", - "A9649G", - "C9652T", - "T9655C", - "C9667T", - "C9668T", - "G9670A", - "T9673C", - "G9676A", - "C9685T", - "C9688G", - "A9691G", - "T9694A", - "C9700G", - "T9702C", - "T9703A", - "G9707A", - "G9715A", - "A9719G", - "C9720T", - "C9721A", - "G9727T", - "C9739A", - "A9742G", - "G9743A", - "G9748C", - "A9754G", - "T9757C", - "T9760C", - "C9763T", - "G9766C", - "C9767T", - "C9772T", - "G9775A", - "C9778T", - "G9784T", - "C9791T", - "G9799A", - "G9805T", - "C9806T", - "T9808G", - "G9817A", - "T9823A", - "G9829A", - "C9841T", - "A9862C", - "A9869C", - "T9891G", - "A9895G", - "G9901A", - "T9907G", - "G9910A", - "C9913A", - "C9916A", - "T9917C", - "T9922A", - "A9925C", - "T9927C", - "G9928T", - "T9931C", - "C9935T", - "G9943A", - "C9946T", - "C9987T", - "C10000T", - "G10026A", - "C10032T", - "A10036G", - "C10048T", - "A10054T", - "A10066G", - "C10069T", - "C10072T", - "A10078T", - "T10084C", - "A10094G", - "C10095T", - "A10099T", - "G10105A", - "A10106G", - "C10108G", - "C10120A", - "T10130C", - "G10132T", - "C10141T", - "C10150T", - "A10156G", - "A10159C", - "A10192C", - "G10195T", - "A10201G", - "C10216T", - "T10222G", - "T10225C", - "G10231A", - "A10244T", - "A10246T", - "G10252A", - "G10258A", - "C10261T", - "T10273G", - "A10276G", - "C10291T", - "A10294G", - "C10300T", - "G10307A", - "G10309A", - "A10324G", - "T10326C", - "T10333A", - "C10336A", - "C10339T", - "C10343G", - "T10345C", - "G10346A", - "G10348T", - "T10357C", - "G10372A", - "C10375T", - "G10390A", - "C10399A", - "A10416G", - "T10426G", - "A10430G", - "A10433G", - "C10435G", - "A10453G", - "T10459C", - "C10462T", - "C10468T", - "C10477G", - "A10480G", - "T10481C", - "A10483G", - "A10489G", - "A10495T", - "T10498G", - "T10507C", - "A10511T", - "A10513G", - "C10516G", - "T10519C", - "C10523A", - "G10524A", - "C10525A", - "A10528G", - "G10549A", - "T10564C", - "T10570A", - "G10579A", - "A10582C", - "A10585C", - "A10603T", - "C10615T", - "A10618G", - "A10621G", - "C10624A", - "C10627T", - "A10633C", - "C10637G", - "G10639A", - "T10648C", - "C10651A", - "A10657T", - "A10678C", - "A10696G", - "T10702C", - "A10708C", - "T10717G", - "T10719A", - "G10723A", - "G10747A", - "A10750T", - "T10751C", - "G10753C", - "A10756G", - "C10762A", - "C10777T", - "A10789C", - "T10798C", - "C10801T", - "C10804T", - "T10810C", - "T10813C", - "T10832C", - "C10837T", - "C10846T", - "C10855T", - "T10856C", - "A10873C", - "C10886T", - "G10888A", - "A10891T", - "C10918T", - "G10951A", - "G10957A", - "T10960C", - "C10966G", - "G10981A", - "C10990T", - "T11008G", - "C11014A", - "C11015T", - "A11026C", - "C11036T", - "A11047G", - "G11050T", - "G11056T", - "C11059T", - "C11068T", - "C11074T", - "A11077C", - "A11079G", - "T11080C", - "C11083T", - "C11086T", - "A11113G", - "C11122T", - "T11134G", - "C11146T", - "C11155T", - "C11158T", - "A11167G", - "C11170T", - "A11189T", - "C11200T", - "G11206A", - "G11218T", - "C11237T", - "G11239A", - "C11254T", - "G11255A", - "T11263A", - "C11272A", - "T11273C", - "A11275T", - "G11281A", - "T11284C", - "C11302T", - "A11329G", - "C11331A", - "A11332T", - "A11340G", - "A11348T", - "A11356G", - "T11359A", - "T11365G", - "C11366T", - "A11379G", - "T11394A", - "T11395G", - "T11396A", - "C11412T", - "C11419T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P98Q, N101T, K135R; E2: S247A; nsP1: S124N, R469K; nsP2: A16G, D352E, F523Y, T647A, N669T, R788G; nsP3: N61S, N74S, T357M, *367C, E379D, E439G, S446A, F448A, A449S, L455M; nsP4: E593G, S596G" - }, - "mutations": { - "CP": [ - "P98Q", - "N101T", - "K135R" - ], - "E2": [ - "S247A" - ], - "nsP1": [ - "S124N", - "R469K" - ], - "nsP2": [ - "A16G", - "D352E", - "F523Y", - "T647A", - "N669T", - "R788G" - ], - "nsP3": [ - "N61S", - "N74S", - "T357M", - "*367C", - "E379D", - "E439G", - "S446A", - "F448A", - "A449S", - "L455M" - ], - "nsP4": [ - "E593G", - "S596G" - ], - "nuc": [ - "A31T", - "T32A", - "A74G", - "G170A", - "A188G", - "A299G", - "A320G", - "G329A", - "G415A", - "A470G", - "T479C", - "T554C", - "C689T", - "T755C", - "C822T", - "T1056C", - "A1265C", - "T1287C", - "A1292G", - "G1424A", - "G1450A", - "G1472A", - "C1625T", - "G1640A", - "C1696G", - "T1754C", - "C1775T", - "C1802T", - "T1811A", - "A1826G", - "C1916T", - "T2006C", - "A2036G", - "C2129T", - "C2132T", - "A2183G", - "C2249T", - "A2303C", - "A2324G", - "C2336T", - "T2339C", - "T2369C", - "A2489T", - "C2558T", - "A2594G", - "C2612T", - "T2657C", - "G2702A", - "T2705G", - "A2720G", - "T2723C", - "C2759T", - "G2906A", - "C2949T", - "G2960A", - "T2972C", - "A3002G", - "C3026T", - "G3041T", - "T3077C", - "T3101C", - "T3126C", - "T3155C", - "T3217A", - "T3248C", - "C3269T", - "C3272T", - "T3275C", - "C3359T", - "T3431C", - "T3491C", - "C3542T", - "A3581G", - "A3588G", - "G3590A", - "T3614G", - "T3623A", - "A3655C", - "C3671T", - "A3701G", - "T3756C", - "A3791G", - "T3797A", - "T3812C", - "C3833T", - "C3845T", - "G3920T", - "C3921T", - "G3938A", - "C3971T", - "A4011G", - "T4043C", - "C4088T", - "C4133T", - "G4142A", - "A4213G", - "C4226T", - "A4252G", - "A4256G", - "T4274C", - "A4280G", - "C4328T", - "C4334T", - "C4403T", - "G4427A", - "G4469A", - "A4553T", - "C4616T", - "T4628C", - "G4634A", - "T4637C", - "A4661G", - "G4673A", - "T4709A", - "C4749T", - "C4766T", - "T4790A", - "C4832T", - "C4838T", - "C4841T", - "A4859G", - "A4895G", - "T4898C", - "T4976C", - "C4979T", - "T4994A", - "G5015A", - "A5030G", - "C5101T", - "A5102G", - "A5114T", - "T5117A", - "A5132C", - "A5168T", - "A5177T", - "G5210A", - "C5213T", - "C5234T", - "A5273C", - "C5285T", - "C5319T", - "C5342T", - "A5347G", - "G5351T", - "T5367G", - "T5373G", - "T5374C", - "G5376T", - "T5385C", - "C5394A", - "T5603C", - "T5726C", - "T5736C", - "G5897A", - "A5904C", - "C5915T", - "G6032A", - "T6170C", - "T6215C", - "C6249A", - "A6266C", - "T6272C", - "A6314G", - "C6320T", - "T6351C", - "T6434A", - "T6437A", - "T6455C", - "A6482G", - "G6494A", - "T6497C", - "T6518C", - "T6521C", - "C6551T", - "G6617A", - "C6635T", - "T6687C", - "C6773T", - "C6782T", - "G6845T", - "C6890T", - "T6900C", - "T6945C", - "C6953T", - "T6965C", - "A6974G", - "C6998T", - "A7067G", - "T7091C", - "A7169G", - "A7187G", - "A7232C", - "C7238T", - "G7244A", - "T7262C", - "A7340G", - "G7376C", - "A7382T", - "T7385C", - "C7433T", - "C7442T", - "C7454T", - "C7472T", - "A7480G", - "A7488G", - "A7559G", - "C7597T", - "C7603T", - "G7672A", - "G7738A", - "T7768C", - "C7854A", - "A7863C", - "C7885T", - "T7925C", - "C7936T", - "A7942C", - "T7948C", - "A7965G", - "C8032T", - "C8041T", - "C8053T", - "A8125T", - "C8149T", - "A8179G", - "T8269C", - "T8281C", - "A8293G", - "C8326T", - "A8353G", - "C8455T", - "C8461T", - "C8623T", - "T8695C", - "A8713G", - "T8716C", - "G8719A", - "T8722C", - "C8743T", - "G8797A", - "A8824G", - "T8830A", - "T8860C", - "C8861T", - "A8884T", - "T8905C", - "A8917C", - "C8923T", - "T8956C", - "A8971G", - "C9067T", - "A9154C", - "G9157A", - "C9163T", - "C9290T", - "T9302G", - "C9391T", - "C9394T", - "A9406T", - "C9446T", - "A9571G", - "A9589G", - "A9607C", - "T9730C", - "C9781T", - "T9790C", - "C9862T", - "C9874T", - "T9892C", - "G10006A", - "C10112T", - "A10144T", - "C10159T", - "C10174T", - "C10186T", - "T10195C", - "A10399G", - "A10429C", - "T10492C", - "C10522T", - "T10555C", - "T10567C", - "T10576C", - "A10594T", - "T10600C", - "G10660A", - "C10687T", - "A10711G", - "G10714A", - "A10735G", - "A10744G", - "C10771T", - "T10828C", - "A10900G", - "C10912T", - "C10930A", - "C11026T", - "T11119C", - "G11149T", - "T11290A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: A186T" - }, - "mutations": { - "CP": [ - "A186T" - ], - "nuc": [ - "C278T", - "T657C", - "G2093A", - "A2696C", - "C3161T", - "C4502T", - "A5360G", - "G8117A", - "C8134T", - "G8605T" - ] - } - }, - "name": "KC344432.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.19148939588190186, - "host": { - "value": "Culex taeniopus" - }, - "num_date": { - "confidence": [ - 1961.7893029130873, - 1961.9986301369863 - ], - "value": 1961.9986301369863 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1961": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: A298T; E2: M181T; nsP2: P349S, G388S; nsP3: E428D" - }, - "mutations": { - "E1": [ - "A298T" - ], - "E2": [ - "M181T" - ], - "nsP2": [ - "P349S", - "G388S" - ], - "nsP3": [ - "E428D" - ], - "nuc": [ - "G1838A", - "C2694T", - "G2811A", - "C2883T", - "T3074C", - "C3191T", - "T3743C", - "A5315T", - "A6056G", - "T7792C", - "T9105C", - "T10213C", - "T10627C", - "G10892A", - "C11423T" - ] - } - }, - "name": "AF075252.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T.", - "value": "Kinney,R.M., Pfeffer,M., Tsuchiya,K.R., Chang,G.J. and Roehrig,J.T." - }, - "country": { - "confidence": { - "Panama": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Panama" - }, - "div": 0.19202533588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1962.0013698630137, - 1962.1753560979566 - ], - "value": 1962.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1962": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000095", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999903063603928 - }, - "entropy": 0.0001338858400797191, - "value": "Panama" - }, - "div": 0.19064746588190187, - "num_date": { - "confidence": [ - 1961.6271300473784, - 1961.8650062375293 - ], - "value": 1961.7588282550337 - }, - "region": { - "confidence": { - "LA,C": 0.9999999987713917 - }, - "entropy": 2.6944536614667552e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.0013820499001584885, - "1961": 0.4890854098917659, - "1962": 0.4838073586416732 - }, - "entropy": 0.9019857431387971, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: A21T, T70N, K110R, I136V; E1: I430V; E2: L197Q, A224S, N313H, R422K; E3: S17T; nsP2: N642S, A657S; nsP3: I65L, T334A, P335S, D337N, P355S, T357S, A361T, A366S, A476V, V527A; nsP4: Y597C", - "GRI Lineage Root": "B" - }, - "mutations": { - "CP": [ - "A21T", - "T70N", - "K110R", - "I136V" - ], - "E1": [ - "I430V" - ], - "E2": [ - "L197Q", - "A224S", - "N313H", - "R422K" - ], - "E3": [ - "S17T" - ], - "nsP2": [ - "N642S", - "A657S" - ], - "nsP3": [ - "I65L", - "T334A", - "P335S", - "D337N", - "P355S", - "T357S", - "A361T", - "A366S", - "A476V", - "V527A" - ], - "nsP4": [ - "Y597C" - ], - "nuc": [ - "T149C", - "T161C", - "A200G", - "T266C", - "T378C", - "C425T", - "C536T", - "T578C", - "T606C", - "C692T", - "G731A", - "T758C", - "A947G", - "T953C", - "T1028C", - "C1151T", - "C1172T", - "T1175C", - "T1238C", - "A1271G", - "T1340C", - "C1430T", - "G1451A", - "G1457A", - "C1476A", - "C1484A", - "T1493C", - "A1508G", - "T1581C", - "A1616G", - "A1637G", - "T1643G", - "C1691T", - "A1724G", - "T1733C", - "G1751A", - "A1766G", - "A1778G", - "C1781T", - "A1817G", - "A1835T", - "C1841T", - "T1865C", - "A1874G", - "C1883T", - "T1895C", - "C1928T", - "C1937T", - "C1949T", - "T1964C", - "T1976C", - "T1997C", - "G2021A", - "C2024T", - "C2039T", - "T2075G", - "G2096A", - "G2102T", - "C2147T", - "G2150A", - "C2165T", - "C2180T", - "C2192T", - "T2252A", - "A2258G", - "A2378G", - "C2405T", - "A2459C", - "T2486C", - "A2492G", - "G2555A", - "C2642T", - "A2654G", - "T2666C", - "T2681A", - "G2837T", - "G2876A", - "C2894G", - "A2945G", - "C2957G", - "T2963C", - "G3005A", - "G3062A", - "T3080C", - "C3113A", - "C3224T", - "A3239T", - "A3254C", - "G3266A", - "T3296C", - "A3377G", - "C3383T", - "C3417T", - "C3464T", - "C3497T", - "C3512T", - "C3530T", - "G3539A", - "A3574G", - "G3618T", - "T3641C", - "G3662A", - "A3668G", - "T3689C", - "T3713C", - "C3770A", - "A3803G", - "C3821T", - "A3878G", - "C3879A", - "A3896G", - "C3914T", - "C3947T", - "A3953G", - "T3965C", - "C3995T", - "T4007C", - "C4025T", - "C4037T", - "A4040G", - "A4112C", - "A4224C", - "T4229C", - "C4262T", - "T4310C", - "C4319T", - "T4349C", - "A4385G", - "C4416T", - "C4436A", - "T4439C", - "C4485T", - "A4580T", - "T4583C", - "C4622T", - "C4667T", - "G4754T", - "C4760T", - "T4778C", - "C4824T", - "C4865T", - "C4961T", - "G4991A", - "T5006C", - "A5031G", - "C5034T", - "G5040A", - "C5094T", - "A5100T", - "G5112A", - "G5127T", - "A5165G", - "T5180C", - "C5195T", - "A5225T", - "T5240A", - "C5303T", - "C5327T", - "C5429T", - "C5458T", - "C5576T", - "G5591A", - "T5611C", - "C5630T", - "C5645T", - "G5654A", - "T5657C", - "C5669T", - "T5699C", - "A5795G", - "T5942C", - "T5964C", - "C5996T", - "T6008C", - "G6080T", - "T6110G", - "C6144T", - "C6161T", - "T6260C", - "A6338G", - "A6449G", - "T6473C", - "T6500C", - "C6560T", - "G6587A", - "A6599C", - "C6680T", - "G6686A", - "T6704C", - "A6716G", - "T6719C", - "T6728C", - "T6758C", - "C6809A", - "A6992G", - "C6999T", - "C7004T", - "C7019T", - "C7028T", - "T7079C", - "T7124C", - "C7142T", - "G7205T", - "A7253T", - "C7328T", - "T7347C", - "A7352G", - "C7361T", - "C7373T", - "T7400C", - "C7445T", - "T7478C", - "A7492G", - "C7493T", - "T7585C", - "G7622A", - "T7627C", - "C7642T", - "C7661T", - "A7684G", - "C7770A", - "G7780A", - "T7813C", - "A7890G", - "T7912A", - "A7967G", - "T7996C", - "T8000C", - "G8065A", - "C8074T", - "C8128T", - "C8137T", - "T8308C", - "A8314G", - "C8323T", - "G8341A", - "T8362C", - "T8368C", - "G8389C", - "T8435A", - "T8449C", - "T8581C", - "C8594T", - "T8647C", - "G8728A", - "T8737A", - "C8770T", - "A8806G", - "C8827T", - "C8854A", - "T8869C", - "A8878T", - "C8926T", - "C8929T", - "C8935T", - "T8986C", - "C9004T", - "A9013T", - "C9016T", - "T9034C", - "G9040A", - "C9133A", - "T9153A", - "C9187T", - "C9217T", - "C9226T", - "G9233T", - "A9253T", - "T9277C", - "G9343A", - "G9367A", - "C9371T", - "C9427T", - "T9436C", - "T9445C", - "G9448A", - "C9493T", - "T9499C", - "A9500C", - "G9586A", - "G9616A", - "G9619A", - "C9634G", - "T9637C", - "T9784C", - "C9797T", - "A9802C", - "T9805C", - "G9828A", - "C9838T", - "T9871C", - "T9896C", - "C9925T", - "T9955C", - "C9958T", - "C10087T", - "C10102T", - "C10129T", - "A10228G", - "T10321C", - "T10348C", - "C10397T", - "C10402T", - "G10411T", - "C10465T", - "T10486C", - "T10540C", - "T10558C", - "A10570G", - "G10573A", - "T10588C", - "A10612G", - "C10630T", - "G10774T", - "T10786C", - "C10795T", - "T10816C", - "G10921A", - "C10948T", - "C10984T", - "G10996A", - "G11044A", - "C11095T", - "G11098A", - "G11176A", - "A11288G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S408N" - }, - "mutations": { - "nsP3": [ - "S408N" - ], - "nuc": [ - "G143A", - "C671T", - "C815T", - "C1304T", - "C2046T", - "A2168G", - "C2204T", - "G2330A", - "C2726T", - "C2849A", - "T3194C", - "A3782G", - "A3893G", - "T4145C", - "G5254A", - "G5381A", - "C5393T", - "T5399C", - "C5474T", - "T5963C", - "A6182G", - "C6410T", - "C6467T", - "C6605T", - "T6665C", - "C7193T", - "T7693C", - "C8026T", - "C8803T", - "G9208A", - "T9682C", - "G9853A", - "C10180T", - "A10333G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: G103V; E3: I38V; nsP1: I462M; nsP3: E169D", - "GRI Lineage Root": "B.3" - }, - "mutations": { - "CP": [ - "G103V" - ], - "E3": [ - "I38V" - ], - "nsP1": [ - "I462M" - ], - "nsP3": [ - "E169D" - ], - "nuc": [ - "T77C", - "T311C", - "T530C", - "C606T", - "C758T", - "G1013A", - "G1040A", - "C1119T", - "T1430G", - "T1691C", - "C1718A", - "A1742G", - "C1829T", - "T2414C", - "T2498C", - "G2522A", - "A2606T", - "T2624C", - "C2948G", - "C3080T", - "C3161T", - "A3164G", - "T3170C", - "C3317T", - "C3359T", - "T3416C", - "G3485A", - "C3506T", - "A3545G", - "T3857G", - "A3956G", - "C4007T", - "A4064T", - "A4127G", - "T4170C", - "G4469A", - "A4538T", - "T4595C", - "T4622C", - "T4646C", - "G4670A", - "T4709C", - "A4742G", - "C4778T", - "T4833C", - "C5006T", - "G5231A", - "G5321A", - "C5342T", - "G5447A", - "A5750T", - "T6144C", - "T6204C", - "C6212T", - "C6236T", - "T6329C", - "G6353A", - "T6827C", - "A6908G", - "T6971C", - "A7067T", - "C7100T", - "A7143C", - "C7184T", - "C7478T", - "T7660C", - "A7849G", - "A7855C", - "G7869T", - "G8104A", - "C8116T", - "C8149T", - "A8498G", - "T8512A", - "C8782T", - "C9151T", - "T9187C", - "G9238A", - "T9253C", - "C9391T", - "T9409A", - "T9424C", - "C9631T", - "C9868T", - "A9901G", - "A10210T", - "T10375C", - "T10471C", - "G10516T", - "C10519T", - "T10555C", - "T10561C", - "G10621A", - "C10672G", - "G10717T", - "T10906C", - "T11323C", - "C11364T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: R402C" - }, - "mutations": { - "nsP3": [ - "R402C" - ], - "nuc": [ - "C149T", - "T500C", - "T887C", - "T1572C", - "C1667T", - "T2024C", - "A2849G", - "T3425C", - "T3674C", - "C4229T", - "C4250T", - "T4724A", - "T4955C", - "A5087G", - "C5235T", - "T6254C", - "T6605C", - "T7229C", - "C7230T", - "A7232G", - "G7720T", - "T8005C", - "C8581T", - "T8770C", - "A8902G", - "T9199C", - "C9886T", - "T9946C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: V517A; nsP3: A174T, H369Y, E378D, L455Q" - }, - "mutations": { - "nsP1": [ - "V517A" - ], - "nsP3": [ - "A174T", - "H369Y", - "E378D", - "L455Q" - ], - "nuc": [ - "A26C", - "A359G", - "G476A", - "C822T", - "G827A", - "C1175T", - "A1334G", - "T1594C", - "A1745G", - "G1763A", - "G1940A", - "G2093A", - "C2120T", - "T2402C", - "T2405C", - "C2435T", - "T3101C", - "A3113C", - "C3195T", - "A3365G", - "C3929T", - "A4085T", - "C4328T", - "C4349T", - "G4551A", - "C4583T", - "C4697T", - "C5136T", - "G5165T", - "T5395A", - "A5591G", - "T5879C", - "T5894C", - "C5963T", - "C6296T", - "A6725C", - "C6779T", - "T6923C", - "C6971T", - "T7284C", - "C7305T", - "A7322G", - "G7738A", - "C7813T", - "A7876G", - "T7969C", - "C8038T", - "G8668A", - "C9187T", - "A9190G", - "T9388C", - "C9481T", - "T9493C", - "A10105G", - "T10207A", - "C10540T", - "C10699T", - "C10849T", - "A10876G", - "C10912T" - ] - } - }, - "name": "KC344458.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21202026588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1970.0013698630137, - 1970.096555432944 - ], - "value": 1970.0013698630137 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1970": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3" - }, - "GRI Lineage Level 3": { - "value": "B.3" - }, - "GRI Lineage Level 4": { - "value": "B.3" - }, - "GRI Lineage Level 5": { - "value": "B.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: S395F; nsP1: A120T; nsP2: A535T; nsP3: T356P, S366F, A389V; nsP4: S563P", - "GRI Lineage Root": "B.3.1" - }, - "mutations": { - "E2": [ - "S395F" - ], - "nsP1": [ - "A120T" - ], - "nsP2": [ - "A535T" - ], - "nsP3": [ - "T356P", - "S366F", - "A389V" - ], - "nsP4": [ - "S563P" - ], - "nuc": [ - "G402A", - "T968C", - "T1056C", - "T1274C", - "G1517A", - "G1724A", - "G1766A", - "A2183G", - "C2450T", - "T3231C", - "G3252A", - "T3383C", - "C4088T", - "T4649C", - "T4664C", - "A5097C", - "A5099C", - "C5128T", - "C5197T", - "G5351A", - "T5469C", - "T5972C", - "C6204T", - "C6368T", - "A6389G", - "A6573C", - "A6575G", - "T6641C", - "A6815T", - "C7124T", - "T7389C", - "C7657T", - "C7936T", - "T8594C", - "T8629C", - "C8731T", - "A8824G", - "T8956C", - "T9070C", - "C9253T", - "T9562C", - "C9637T", - "C9747T", - "C10693T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: V103G; E1: I208V, S211T, T389A; E2: Q81R, S182R, S282L, F395S; nsP1: T120S, R229K, A508E; nsP2: Q75H, D454E, T495A, H617Y; nsP3: L65I, A360V, E379D, V389A, S521C; nsP4: L105V, E235D, P563S" - }, - "mutations": { - "CP": [ - "V103G" - ], - "E1": [ - "I208V", - "S211T", - "T389A" - ], - "E2": [ - "Q81R", - "S182R", - "S282L", - "F395S" - ], - "nsP1": [ - "T120S", - "R229K", - "A508E" - ], - "nsP2": [ - "Q75H", - "D454E", - "T495A", - "H617Y" - ], - "nsP3": [ - "L65I", - "A360V", - "E379D", - "V389A", - "S521C" - ], - "nsP4": [ - "L105V", - "E235D", - "P563S" - ], - "nuc": [ - "C228T", - "C281T", - "A402T", - "G476A", - "G521A", - "T554C", - "T678C", - "G730A", - "G734A", - "T741C", - "T758C", - "C809T", - "C905T", - "C953T", - "C1056T", - "G1109A", - "T1229A", - "A1235G", - "C1340T", - "C1367T", - "C1475T", - "C1553A", - "C1567A", - "G1616T", - "A1646T", - "T1694C", - "C1712T", - "A1718G", - "C1721T", - "T1781C", - "C1796T", - "G1874T", - "T1928C", - "C1970T", - "C2054T", - "A2111G", - "G2168T", - "C2219G", - "C2243T", - "T2291C", - "C2375T", - "A2477G", - "T2723C", - "T2840C", - "G2849A", - "C2949T", - "T3011G", - "G3050A", - "A3132G", - "T3155C", - "C3170T", - "C3176T", - "G3188A", - "C3194T", - "C3272T", - "C3366T", - "C3425T", - "C3498T", - "C3647T", - "C3719T", - "C3869T", - "C3929T", - "C4224A", - "T4601C", - "G4631A", - "A4781G", - "A4799G", - "G4862T", - "T4961C", - "G4964A", - "T4982C", - "A5093G", - "C5110T", - "A5168C", - "T5197C", - "T5288C", - "A5447G", - "T5456C", - "C5469T", - "A5592T", - "C5642T", - "C5714T", - "T5723C", - "G5795A", - "T5894C", - "C5972T", - "T5978C", - "T6014C", - "T6015G", - "C6065A", - "C6144T", - "T6191C", - "C6260T", - "A6266C", - "C6282T", - "G6407C", - "T6434C", - "T6467C", - "G6488T", - "T6497C", - "A6593T", - "C6635T", - "C6641T", - "T6677C", - "T6714C", - "C6758T", - "T6815C", - "G6857A", - "G6887A", - "A6893T", - "T7049C", - "C7172T", - "C7208T", - "C7214T", - "C7238T", - "C7389T", - "A7427G", - "C7603T", - "C7612T", - "G7621A", - "T7642C", - "T7657C", - "T7768C", - "C7855A", - "T7869G", - "T7925C", - "T7978C", - "C7990T", - "T7993C", - "T8045C", - "C8161T", - "C8422T", - "C8455T", - "T8695C", - "A8805G", - "G8806T", - "C8986T", - "C9025T", - "C9109A", - "C9187T", - "T9217C", - "A9352G", - "T9391A", - "C9408T", - "C9562T", - "T9592A", - "A9598G", - "C9640T", - "C9740A", - "T9747C", - "T9797C", - "C9826A", - "T9856C", - "C10084T", - "T10150C", - "T10195C", - "C10366T", - "C10375T", - "C10561T", - "A10621G", - "A10622G", - "T10631A", - "C10633A", - "C11077T", - "G11089T", - "G11113T", - "T11140C", - "A11165G", - "C11423T", - "G11431T", - "A11437T", - "A11438T", - "A11440T", - "C11444T" - ] - } - }, - "name": "MK796243.1", - "node_attrs": { - "author": { - "author": "Leon,B., Jimenez,C., Gonzalez-Barrientos,R. and Ramirez,L.", - "value": "Leon,B., Jimenez,C., Gonzalez-Barrientos,R. and Ramirez,L." - }, - "country": { - "confidence": { - "Costa_Rica": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Costa_Rica" - }, - "div": 0.22465358588190187, - "host": { - "value": "equine" - }, - "num_date": { - "confidence": [ - 2015.8068493150686, - 2015.8068493150686 - ], - "value": 2015.8068493150686 - }, - "place_of_collection": { - "value": "Costa_Rica" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2015": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2015" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.1" - }, - "GRI Lineage Level 3": { - "value": "B.3.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T1877A", - "G8185A", - "G11167A" - ] - } - }, - "name": "KC344441.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Nicaragua": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Nicaragua" - }, - "div": 0.21118083588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1968.7820486184626, - 1968.9986338797814 - ], - "value": 1968.9986338797814 - }, - "place_of_collection": { - "value": "Nicaragua" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1968": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.1" - }, - "GRI Lineage Level 3": { - "value": "B.3.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.1" - } - } - } - ], - "name": "NODE_0000100", - "node_attrs": { - "country": { - "confidence": { - "Costa_Rica": 0.001818708850588668, - "Guatemala": 0.16296752629537883, - "Nicaragua": 0.8331958426884216 - }, - "entropy": 0.4763459568538241, - "value": "Nicaragua" - }, - "div": 0.21000212588190187, - "num_date": { - "confidence": [ - 1968.7653586207136, - 1968.9108128314906 - ], - "value": 1968.8438465063425 - }, - "region": { - "confidence": { - "LA,C": 0.999999974125627 - }, - "entropy": 4.890924701206993e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.046366925351401814, - "1968": 0.8878313273309344, - "1970": 0.020411494050284664, - "1971": 0.0024402726178293192 - }, - "entropy": 0.639177974708704, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.1" - }, - "GRI Lineage Level 3": { - "value": "B.3.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.1" - } - } - } - ], - "name": "NODE_0000099", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.992264295319986, - "Nicaragua": 0.006824887174757392 - }, - "entropy": 0.04874569184936405, - "value": "Guatemala" - }, - "div": 0.20674731588190187, - "num_date": { - "confidence": [ - 1967.8364119486685, - 1968.2446560882859 - ], - "value": 1967.9840543061696 - }, - "region": { - "confidence": { - "LA,C": 0.9999999924675772 - }, - "entropy": 1.5162140027258118e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.2678525377460032, - "1968": 0.4914832858840886, - "1970": 0.12297174187044799, - "1971": 0.006393776708969538 - }, - "entropy": 1.655152590015484, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3" - }, - "GRI Lineage Level 3": { - "value": "B.3" - }, - "GRI Lineage Level 4": { - "value": "B.3" - }, - "GRI Lineage Level 5": { - "value": "B.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: L407F" - }, - "mutations": { - "nsP3": [ - "L407F" - ], - "nuc": [ - "A743G", - "T1949C", - "C2171T", - "T2799C", - "T3614C", - "C4784T", - "C5250T", - "G6674A", - "A8341G", - "A9307C", - "T10129C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: V42I; CP: F2L, Y8F; nsP2: F295Y, M446L; nsP3: V476A" - }, - "mutations": { - "6k": [ - "V42I" - ], - "CP": [ - "F2L", - "Y8F" - ], - "nsP2": [ - "F295Y", - "M446L" - ], - "nsP3": [ - "V476A" - ], - "nuc": [ - "A26C", - "T1097C", - "C1106T", - "T1190C", - "G1766A", - "A1853G", - "T1979C", - "A2144G", - "T2154C", - "G2201A", - "C2213T", - "G2285A", - "T2291C", - "C2328T", - "T2533A", - "A2696G", - "A2985T", - "C3194A", - "C3195T", - "A3233G", - "A3395G", - "T3623C", - "T3756C", - "G3767A", - "A4085T", - "A4406G", - "A4418G", - "A4469G", - "C4502T", - "A4550G", - "T4667C", - "G4742A", - "A4814G", - "A4943T", - "C5018T", - "A5030G", - "A5273G", - "C5354T", - "G5384A", - "T5458C", - "C5690T", - "T6050C", - "T6590C", - "C6897T", - "T6900C", - "T7493C", - "T7565C", - "A7584T", - "C8032T", - "T8074C", - "A8119T", - "G8395A", - "C8408T", - "T8506C", - "C8537T", - "G8587A", - "A8596G", - "C8647T", - "T8689C", - "T8830A", - "C8932T", - "T9094C", - "A9595C", - "G9956A", - "G10333A", - "G10513A", - "C10540T", - "C10771T" - ] - } - }, - "name": "KC344444.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Honduras": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Honduras" - }, - "div": 0.21207819588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1967.8415604362822, - 1967.9986301369863 - ], - "value": 1967.9986301369863 - }, - "place_of_collection": { - "value": "Honduras" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3" - }, - "GRI Lineage Level 3": { - "value": "B.3" - }, - "GRI Lineage Level 4": { - "value": "B.3" - }, - "GRI Lineage Level 5": { - "value": "B.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: T495S, V582A; nsP3: T356I, F407S", - "GRI Lineage Root": "B.3.0" - }, - "mutations": { - "nsP2": [ - "T495S", - "V582A" - ], - "nsP3": [ - "T356I", - "F407S" - ], - "nuc": [ - "C542T", - "C590T", - "C953T", - "A1013G", - "T1194C", - "G1613A", - "G1649A", - "T2228C", - "A2330G", - "C2333T", - "A2546C", - "C2759T", - "T2786C", - "C2789T", - "A3132T", - "T3394C", - "C3416T", - "G3878A", - "C4205T", - "C4214T", - "C4787T", - "C4841T", - "T5081C", - "C5098T", - "T5251C", - "T6590A", - "T6714C", - "T6770C", - "G7001A", - "G7145A", - "T7193C", - "T7241C", - "T7259C", - "C7585T", - "T7661C", - "C8038T", - "A8104G", - "T8128C", - "T8494C", - "C9163T", - "C9250T", - "A9382G", - "G9463A", - "T10150C", - "C11323T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T2103C", - "T3536A", - "T4562C" - ] - }, - "labels": { - "GRI Lineage Root": "B.3.0.1" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: T188I; E1: P26S, A199V; E2: L369V; E3: K52N; nsP1: K3R; nsP3: I356L, G370*, E422V; nsP4: K118R" - }, - "mutations": { - "CP": [ - "T188I" - ], - "E1": [ - "P26S", - "A199V" - ], - "E2": [ - "L369V" - ], - "E3": [ - "K52N" - ], - "nsP1": [ - "K3R" - ], - "nsP3": [ - "I356L", - "G370*", - "E422V" - ], - "nsP4": [ - "K118R" - ], - "nuc": [ - "A52G", - "C1175T", - "C1475T", - "A1793G", - "C2132T", - "C2537T", - "T2972C", - "C3158T", - "T3461C", - "G3758A", - "G3974A", - "T4541C", - "C4886A", - "G4949A", - "A5097C", - "G5139T", - "A5296T", - "C5444A", - "C5672T", - "C5690T", - "A6055G", - "A6353G", - "G6716A", - "C7305T", - "C7855A", - "C8092T", - "C8122T", - "C8124T", - "C8318T", - "C8362T", - "A8542T", - "T8689C", - "T8830A", - "C9290T", - "T9505C", - "T9668G", - "G9688A", - "C10076T", - "C10596T", - "A10735G", - "T11122C" - ] - } - }, - "name": "KC344456.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Honduras": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Honduras" - }, - "div": 0.21383921588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1967.9663220136565, - 1967.9986301369863 - ], - "value": 1967.9986301369863 - }, - "place_of_collection": { - "value": "Honduras" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: A336D; nsP2: K505R, N669K" - }, - "mutations": { - "nsP1": [ - "A336D" - ], - "nsP2": [ - "K505R", - "N669K" - ], - "nuc": [ - "T857C", - "C1051A", - "C1415T", - "A3163G", - "T3317C", - "T3656A", - "C3737T", - "C4250T", - "T4340C", - "C5867T", - "A6332G", - "C6764T", - "T7262C", - "A8713G", - "C8758T", - "C9424T", - "G11035A", - "T11068C", - "T11137C" - ] - } - }, - "name": "KC344443.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21170696588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1970.5821917808219, - 1970.6561643835616 - ], - "value": 1970.5821917808219 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1970": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.1" - } - } - } - ], - "name": "NODE_0000103", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9866896905530907, - "Honduras": 0.013297389056405477 - }, - "entropy": 0.07084391066073895, - "value": "Guatemala" - }, - "div": 0.21008258588190187, - "num_date": { - "confidence": [ - 1967.6350342867545, - 1967.788920293855 - ], - "value": 1967.72345707587 - }, - "region": { - "confidence": { - "LA,C": 0.9999999994896973 - }, - "entropy": 1.1643309488910919e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.9421959244952112, - "1968": 0.049444272678302696, - "1970": 0.004725866713822839 - }, - "entropy": 0.2640748008153031, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C905T", - "A3086G", - "C3737T", - "C6870T", - "G7436A", - "G7732A", - "C8932T", - "C9031T", - "C10771T", - "A11330G" - ] - }, - "labels": { - "GRI Lineage Root": "B.3.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: P249L; nsP1: M462I; nsP3: V384M, F553Y" - }, - "mutations": { - "E1": [ - "P249L" - ], - "nsP1": [ - "M462I" - ], - "nsP3": [ - "V384M", - "F553Y" - ], - "nuc": [ - "C23G", - "C278T", - "G293T", - "C428T", - "G497A", - "C1022T", - "G1430T", - "G1742A", - "C1796T", - "A1919T", - "C2558T", - "C2949T", - "T3125C", - "G3953A", - "C4616T", - "T5000C", - "G5181A", - "T5405C", - "T5689A", - "C5693T", - "A6230T", - "C6320T", - "C6527T", - "G6617A", - "G6692A", - "C7040T", - "A7250G", - "A7744T", - "C7996T", - "C8644T", - "A8698G", - "C8857T", - "T9172C", - "G9220A", - "C10552T", - "C10561T", - "C10746T", - "T10804C" - ] - } - }, - "name": "KC344455.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Guatemala" - }, - "div": 0.21394116588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1979.0013698630137, - 1979.493581432175 - ], - "value": 1979.0013698630137 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1979": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1979" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: H394L; nsP4: I140T" - }, - "mutations": { - "nsP3": [ - "H394L" - ], - "nsP4": [ - "I140T" - ], - "nuc": [ - "G1184A", - "C1991T", - "C2717T", - "C3225T", - "C3230T", - "A3968T", - "T3977C", - "C3986T", - "A5212T", - "T6121C", - "C7855A", - "T7867C", - "T8962A", - "C9148T", - "C9451T", - "A9463C", - "T9592G", - "C10792T" - ] - } - }, - "name": "KC344442.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21218870588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1968.6654494664897, - 1968.9986338797814 - ], - "value": 1968.9986338797814 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1968": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.0" - } - } - } - ], - "name": "NODE_0000104", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9998695293870683 - }, - "entropy": 0.001307690022757135, - "value": "Guatemala" - }, - "div": 0.21052688588190185, - "num_date": { - "confidence": [ - 1968.255987305836, - 1968.7998762775055 - ], - "value": 1968.5289987542312 - }, - "region": { - "confidence": { - "LA,C": 0.9999999864890203 - }, - "entropy": 2.6410582870621484e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.2837270804929015, - "1968": 0.6427092292592864, - "1969": 0.003598580000302852, - "1970": 0.004336108719673062 - }, - "entropy": 1.1112028692591995, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.3.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.3.0.0" - } - } - } - ], - "name": "NODE_0000102", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9927024590369744, - "Honduras": 0.007296711278291186 - }, - "entropy": 0.043185959750818195, - "value": "Guatemala" - }, - "div": 0.20980181588190186, - "num_date": { - "confidence": [ - 1967.5955213930126, - 1967.7643705658809 - ], - "value": 1967.6758991099493 - }, - "region": { - "confidence": { - "LA,C": 0.9999999995693623 - }, - "entropy": 9.897802687664193e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.90448569924756, - "1968": 0.08907543011953158, - "1970": 0.0034929080634849277 - }, - "entropy": 0.35405413126628604, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3.0" - }, - "GRI Lineage Level 3": { - "value": "B.3.0" - }, - "GRI Lineage Level 4": { - "value": "B.3.0" - }, - "GRI Lineage Level 5": { - "value": "B.3.0" - } - } - } - ], - "name": "NODE_0000101", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9919678341644368, - "Honduras": 0.007954645858288223 - }, - "entropy": 0.04726367886941242, - "value": "Guatemala" - }, - "div": 0.20587278588190186, - "num_date": { - "confidence": [ - 1966.7504018054808, - 1967.0693715932105 - ], - "value": 1966.9065622440921 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993196276 - }, - "entropy": 1.5327735532015165e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.9025042981617085, - "1968": 0.0872495933563264, - "1970": 0.004171541636205179 - }, - "entropy": 0.3815812794715461, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3" - }, - "GRI Lineage Level 3": { - "value": "B.3" - }, - "GRI Lineage Level 4": { - "value": "B.3" - }, - "GRI Lineage Level 5": { - "value": "B.3" - } - } - } - ], - "name": "NODE_0000098", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9973612591136461, - "Honduras": 0.0023155145787669526 - }, - "entropy": 0.019558360950380913, - "value": "Guatemala" - }, - "div": 0.20445006588190187, - "num_date": { - "confidence": [ - 1966.4878774702818, - 1966.8705077196005 - ], - "value": 1966.662279034555 - }, - "region": { - "confidence": { - "LA,C": 0.9999999968351112 - }, - "entropy": 6.645071069515286e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.004651756966905654, - "1967": 0.795514776470199, - "1968": 0.13787855227976628, - "1970": 0.0167082075527517 - }, - "entropy": 0.8584845512734353, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.3" - }, - "GRI Lineage Level 2": { - "value": "B.3" - }, - "GRI Lineage Level 3": { - "value": "B.3" - }, - "GRI Lineage Level 4": { - "value": "B.3" - }, - "GRI Lineage Level 5": { - "value": "B.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: N102T; E1: I208V; E2: V134A; nsP1: N322D, S458N; nsP2: H560Q, V582A; nsP3: K94R, T227A, A389T, G451R, I465K, V476A", - "GRI Lineage Root": "B.1" - }, - "mutations": { - "CP": [ - "N102T" - ], - "E1": [ - "I208V" - ], - "E2": [ - "V134A" - ], - "nsP1": [ - "N322D", - "S458N" - ], - "nsP2": [ - "H560Q", - "V582A" - ], - "nsP3": [ - "K94R", - "T227A", - "A389T", - "G451R", - "I465K", - "V476A" - ], - "nuc": [ - "C80T", - "C149T", - "A188G", - "A275G", - "C281T", - "T554C", - "C590T", - "C593T", - "C809A", - "A1008G", - "T1154C", - "A1235G", - "G1412A", - "G1417A", - "G1511A", - "G1649A", - "C1712T", - "C1718T", - "C1796T", - "G1814A", - "G1868A", - "T1928C", - "G2069A", - "C2237T", - "T2291C", - "A2348G", - "T2426C", - "C2462A", - "T2507C", - "T2520C", - "C2558T", - "T2579C", - "G2834A", - "T2840C", - "C2978T", - "C3191T", - "T3329A", - "G3371A", - "T3394C", - "C3503T", - "C3626T", - "C3641T", - "C3689T", - "A3701G", - "T3761C", - "A3770C", - "T3785C", - "T3797C", - "C3836T", - "T3848A", - "T3977C", - "T3987C", - "C3998T", - "C4091T", - "C4229T", - "C4250T", - "A4312G", - "A4511G", - "A4586T", - "C4613T", - "T4625C", - "A4710G", - "T4883C", - "T5000C", - "G5039A", - "C5147T", - "G5196A", - "C5234T", - "C5255T", - "G5382A", - "T5425A", - "T5426A", - "T5441C", - "T5458C", - "G5471A", - "C5585T", - "G5624A", - "A5702G", - "G5765A", - "T5810C", - "G5840A", - "C5900A", - "T5978C", - "T6011A", - "C6065T", - "C6074T", - "T6077C", - "A6218G", - "G6287A", - "A6341G", - "A6476G", - "C6821A", - "T6932A", - "C7016T", - "C7040T", - "T7050C", - "G7055T", - "C7103T", - "C7158T", - "G7175A", - "T7211C", - "C7230T", - "T7259C", - "G7265A", - "G7268A", - "A7340C", - "T7373C", - "T7395C", - "G7496A", - "A7559G", - "T7768C", - "G7846A", - "A7866C", - "C7870T", - "T7957A", - "G7975A", - "C8032T", - "C8038T", - "C8092T", - "C8098T", - "C8158T", - "C8374T", - "T8413A", - "C8461T", - "C8581T", - "T8929C", - "T8964C", - "T9202A", - "T9226A", - "C9326T", - "T9349C", - "C9376T", - "A9406C", - "C9583T", - "C9637T", - "T9667C", - "T9668C", - "A9670C", - "T9727G", - "C9748A", - "A9775G", - "T9791C", - "C10159T", - "T10216C", - "C10405T", - "A10525G", - "C10552T", - "A10622G", - "G10714T", - "C10738T", - "T10750C", - "T10768G", - "C10816T", - "A10831G", - "A10900G", - "A11104G", - "T11119C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP2: S148T; nsP3: E351G; nsP4: P602S" - }, - "mutations": { - "nsP2": [ - "S148T" - ], - "nsP3": [ - "E351G" - ], - "nsP4": [ - "P602S" - ], - "nuc": [ - "T533C", - "T728C", - "T1772C", - "G1874A", - "T2091A", - "C3326T", - "C3350T", - "C3366T", - "T3642C", - "G3884A", - "C4061T", - "C4334T", - "C4349T", - "T4637A", - "A4796G", - "A5083G", - "C5189T", - "C5333T", - "T6351C", - "G6659A", - "T6662A", - "C6839T", - "C7289T", - "C7505T", - "C7506T", - "C7918T", - "T8401C", - "T8686C", - "A9355G", - "C9430T", - "A9712G", - "C10084T", - "T10492C", - "C10852T", - "A10999C", - "T11158C", - "T11287A", - "A11330T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: R407S; nsP1: K399T; nsP2: A174P; nsP3: A544S; nsP4: D152G", - "GRI Lineage Root": "B.1.3" - }, - "mutations": { - "E2": [ - "R407S" - ], - "nsP1": [ - "K399T" - ], - "nsP2": [ - "A174P" - ], - "nsP3": [ - "A544S" - ], - "nsP4": [ - "D152G" - ], - "nuc": [ - "C599T", - "G1049A", - "A1240C", - "C1721T", - "G2169C", - "C3008T", - "T3350A", - "T3914C", - "T4325C", - "T5393C", - "C5657T", - "G5661T", - "C5792T", - "T5862C", - "A6157G", - "C7340T", - "C7439T", - "C9286T", - "A9508G", - "G9649A", - "C9782A", - "C10015T", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: G416E, A418N, I419T, V431T; nsP1: M184V, T399K; nsP2: P174A; nsP3: S544A; nsP4: G152D" - }, - "mutations": { - "E1": [ - "G416E", - "A418N", - "I419T", - "V431T" - ], - "nsP1": [ - "M184V", - "T399K" - ], - "nsP2": [ - "P174A" - ], - "nsP3": [ - "S544A" - ], - "nsP4": [ - "G152D" - ], - "nuc": [ - "A1T", - "G4A", - "A594G", - "C1240A", - "C2169G", - "T5661G", - "G6157A", - "G11247A", - "G11252A", - "C11253A", - "T11254C", - "T11256C", - "G11291A", - "T11292C" - ] - } - }, - "name": "MK028849.1", - "node_attrs": { - "author": { - "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", - "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." - }, - "country": { - "confidence": { - "Guatemala": 0.2962912259530842, - "Honduras": 0.07556831145576559, - "Mexico": 0.07708974072563382, - "Nicaragua": 0.06212043628110876 - }, - "entropy": 2.3998175426521975, - "value": "Guatemala" - }, - "div": 0.21624523588190186, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2018.521917808219, - 2018.521917808219 - ], - "value": 2018.521917808219 - }, - "region": { - "confidence": { - "?": 0.017518696988117453, - "AUSNZ": 0.04150868870787821, - "LA,C": 0.9409726143040045 - }, - "entropy": 0.26017860299596307, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2018": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2018" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.3" - }, - "GRI Lineage Level 3": { - "value": "B.1.3" - }, - "GRI Lineage Level 4": { - "value": "B.1.3" - }, - "GRI Lineage Level 5": { - "value": "B.1.3" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "U34999.1", - "node_attrs": { - "author": { - "author": "Oberste,M.S., Parker,M.D. and Smith,J.F.", - "value": "Oberste,M.S., Parker,M.D. and Smith,J.F." - }, - "country": { - "confidence": { - "Guatemala": 0.5029758750559062, - "Honduras": 0.05764404965349773, - "Mexico": 0.05941976890226232, - "Nicaragua": 0.0453169622193828 - }, - "entropy": 1.9530064685199688, - "value": "Guatemala" - }, - "div": 0.21571311588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1995.6479452054793, - 1995.6479452054793 - ], - "value": 1995.6479452054793 - }, - "region": { - "confidence": { - "?": 0.009695045015366149, - "AUSNZ": 0.02330140974780479, - "LA,C": 0.9670035452368292 - }, - "entropy": 0.1649891973320784, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.3" - }, - "GRI Lineage Level 3": { - "value": "B.1.3" - }, - "GRI Lineage Level 4": { - "value": "B.1.3" - }, - "GRI Lineage Level 5": { - "value": "B.1.3" - } - } - } - ], - "name": "NODE_0000107", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.5054482784937396, - "Honduras": 0.0573985484554742, - "Mexico": 0.05917308747002962, - "Nicaragua": 0.04510547056054154 - }, - "entropy": 1.946632852016645, - "value": "Guatemala" - }, - "div": 0.21534506588190186, - "num_date": { - "confidence": [ - 1995.4969425073164, - 1995.6199401886151 - ], - "value": 1995.574871625765 - }, - "region": { - "confidence": { - "?": 0.009624717698041907, - "AUSNZ": 0.0231353285460446, - "LA,C": 0.9672399537559135 - }, - "entropy": 0.16404586505495639, - "value": "LA,C" - }, - "year": { - "confidence": { - "1993": 0.003924038666859193, - "1994": 0.0037243890031482753, - "1995": 0.8943731307139752, - "1998": 0.003260950833454508 - }, - "entropy": 0.7419231234423381, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.3" - }, - "GRI Lineage Level 3": { - "value": "B.1.3" - }, - "GRI Lineage Level 4": { - "value": "B.1.3" - }, - "GRI Lineage Level 5": { - "value": "B.1.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: S644A; nsP4: I47L", - "GRI Lineage Root": "B.1.1" - }, - "mutations": { - "nsP2": [ - "S644A" - ], - "nsP4": [ - "I47L" - ], - "nuc": [ - "T770C", - "T3579G", - "C5690T", - "A5841C", - "G8632A", - "A10639G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A26C", - "G3380T", - "T4622C", - "T4700C", - "G5780A", - "C6320T", - "T11194C" - ] - }, - "labels": { - "GRI Lineage Root": "B.1.1.1" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: N444D; nsP4: E179K" - }, - "mutations": { - "nsP1": [ - "N444D" - ], - "nsP4": [ - "E179K" - ], - "nuc": [ - "C653T", - "A1374G", - "T3800C", - "C5781T", - "G6237A", - "C6911T", - "G8560A", - "A10429G" - ] - } - }, - "name": "KC344454.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21596148588190184, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1971.0013698630137, - 1971.0962207231573 - ], - "value": 1971.0013698630137 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1971": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: N492H" - }, - "mutations": { - "nsP1": [ - "N492H" - ], - "nuc": [ - "T1151C", - "A1518C", - "T3623C", - "C9805T" - ] - } - }, - "name": "KC344436.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21560613588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1970.5821917808219, - 1970.6523723838686 - ], - "value": 1970.5821917808219 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1970": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.1" - } - } - } - ], - "name": "NODE_0000109", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999822165234 - }, - "entropy": 3.7354825772288114e-7, - "value": "Guatemala" - }, - "div": 0.21525185588190185, - "num_date": { - "confidence": [ - 1970.4244287004576, - 1970.5952572000676 - ], - "value": 1970.522164073965 - }, - "region": { - "confidence": { - "LA,C": 0.9999999995214147 - }, - "entropy": 1.0950272134474148e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.0022395699170120746, - "1968": 0.04471439735535282, - "1970": 0.5649884308519713, - "1971": 0.3596190946511751 - }, - "entropy": 1.0505312122239248, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C5960T", - "C11077T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: Q39R" - }, - "mutations": { - "CP": [ - "Q39R" - ], - "nuc": [ - "A7677G" - ] - } - }, - "name": "KC344435.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21494927588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1968.9705606315565, - 1968.9986338797814 - ], - "value": 1968.9986338797814 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1968": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C378T", - "C1313T", - "C1802T", - "T2405C", - "C4749T", - "T7783C", - "T7798C", - "C8446T", - "C10027T", - "T10141C" - ] - }, - "labels": { - "GRI Lineage Root": "B.1.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP4: K229N" - }, - "mutations": { - "nsP4": [ - "K229N" - ], - "nuc": [ - "A2189G", - "T2723C", - "A6389T", - "T7019C", - "G8296T" - ] - } - }, - "name": "KC344467.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Guatemala" - }, - "div": 0.21619262588190183, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1972.0013661202186, - 1972.2996654381548 - ], - "value": 1972.0013661202186 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1972": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1972" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: D352N; nsP4: A108V" - }, - "mutations": { - "nsP2": [ - "D352N" - ], - "nsP4": [ - "A108V" - ], - "nuc": [ - "A1601G", - "G2703A", - "G4187A", - "T4694C", - "T4727C", - "A5336G", - "C6025T", - "C8149G", - "C9184T", - "A10429G" - ] - } - }, - "name": "KC344434.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Guatemala" - }, - "div": 0.21663754588190184, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1973.0013698630137, - 1973.1075503706186 - ], - "value": 1973.0013698630137 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1973": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.0" - } - } - } - ], - "name": "NODE_0000111", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999240857316 - }, - "entropy": 0.0000014848899315451415, - "value": "Guatemala" - }, - "div": 0.21574870588190184, - "num_date": { - "confidence": [ - 1971.8332089539613, - 1972.2175542916686 - ], - "value": 1971.955484564842 - }, - "region": { - "confidence": { - "LA,C": 0.999999997999016 - }, - "entropy": 4.2931125607901424e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.010092326683035056, - "1970": 0.0023886893591102, - "1972": 0.8172816623209392, - "1973": 0.13205997035848463 - }, - "entropy": 0.7606808897195374, - "value": "1972" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.1.0" - } - } - } - ], - "name": "NODE_0000110", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999850779651 - }, - "entropy": 3.1578842539375476e-7, - "value": "Guatemala" - }, - "div": 0.21486000588190185, - "num_date": { - "confidence": [ - 1968.973250010016, - 1968.9978328110976 - ], - "value": 1968.9895551013656 - }, - "region": { - "confidence": { - "LA,C": 0.9999999996137275 - }, - "entropy": 8.920094085698466e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.8134966632087557, - "1970": 0.041881725448676375, - "1971": 0.07830549503254093, - "1972": 0.016140024456518156 - }, - "entropy": 0.9009507441100909, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1" - } - } - } - ], - "name": "NODE_0000108", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999346578571 - }, - "entropy": 0.0000012357583483593118, - "value": "Guatemala" - }, - "div": 0.21468260588190186, - "num_date": { - "confidence": [ - 1968.949918797576, - 1968.992444270363 - ], - "value": 1968.9748646685487 - }, - "region": { - "confidence": { - "LA,C": 0.9999999992766357 - }, - "entropy": 1.6251889452771837e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.6576331079374176, - "1970": 0.08119954771087816, - "1971": 0.163102831538275, - "1972": 0.014192255016523145 - }, - "entropy": 1.3518972084242957, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.1" - }, - "GRI Lineage Level 3": { - "value": "B.1.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.1" - } - } - } - ], - "name": "NODE_0000106", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999859636812242 - }, - "entropy": 0.00019220033772540977, - "value": "Guatemala" - }, - "div": 0.21387706588190186, - "num_date": { - "confidence": [ - 1968.8540448845758, - 1968.9470132580996 - ], - "value": 1968.9046057308096 - }, - "region": { - "confidence": { - "LA,C": 0.999999791273403 - }, - "entropy": 0.0000035269037301072304, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.5942672650832576, - "1970": 0.07499198135001447, - "1971": 0.1733108578764003, - "1972": 0.014341505266015391 - }, - "entropy": 1.67641865250597, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T1694C", - "T3935C", - "G4469A", - "T5393C", - "A6011G", - "C7340T", - "C8062A", - "C8731T", - "C9184T", - "C9631T", - "C9640T", - "C9670T", - "T9709C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: Y373F; E2: E303D; nsP2: A582V; nsP3: Q395R, L407P, E439V; nsP4: M276L, C597W" - }, - "mutations": { - "E1": [ - "Y373F" - ], - "E2": [ - "E303D" - ], - "nsP2": [ - "A582V" - ], - "nsP3": [ - "Q395R", - "L407P", - "E439V" - ], - "nsP4": [ - "M276L", - "C597W" - ], - "nuc": [ - "C28T", - "T536C", - "C578T", - "C905T", - "C1022T", - "C1475T", - "G1748A", - "T1823C", - "C1931T", - "C2120T", - "C2129T", - "C2132T", - "T2180C", - "C2840T", - "C3230T", - "C3257T", - "C3394T", - "C4277T", - "A4433C", - "C4496T", - "G4559A", - "C4658T", - "A5215G", - "G5249A", - "T5251C", - "C5282T", - "A5347T", - "C5423A", - "A5591T", - "T6191C", - "G6362T", - "T6410C", - "A6528T", - "C6704T", - "A6821T", - "C7005T", - "C7100T", - "C7148T", - "C7214T", - "T7229C", - "T7493G", - "C7585T", - "C7612T", - "G7774A", - "A7942G", - "T8026C", - "T8032C", - "C8050A", - "T8242C", - "T8323C", - "C8488T", - "C8527T", - "C8590T", - "T8770C", - "T8962G", - "T9016C", - "A9040G", - "T9172C", - "A9247T", - "C9290T", - "T9326C", - "A9472C", - "T9526C", - "A9572C", - "C9868T", - "C9938T", - "A10384T", - "G10831A", - "T10984C", - "A11118T", - "C11119T", - "T11140C", - "C11364T", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: A299V; nsP4: T181A" - }, - "mutations": { - "E1": [ - "A299V" - ], - "nsP4": [ - "T181A" - ], - "nuc": [ - "C1119T", - "C1199T", - "T3074C", - "A3923T", - "C4334T", - "G4826A", - "T6144C", - "A6243G", - "C6446A", - "G10066A", - "A10399G", - "C10896T" - ] - } - }, - "name": "KC344527.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.2182921758819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1977.0013698630137, - 1977.9986301369863 - ], - "value": 1977.806965775957 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1977": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C807T", - "T10555C" - ] - }, - "labels": { - "GRI Lineage Root": "B.1.2" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP4: S563F" - }, - "mutations": { - "nsP4": [ - "S563F" - ], - "nuc": [ - "C2756T", - "C7390T", - "C9871T" - ] - } - }, - "name": "KC344437.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Guatemala" - }, - "div": 0.2176614358819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1977.6129626825873, - 1977.9986301369863 - ], - "value": 1977.9986301369863 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1977": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.2" - }, - "GRI Lineage Level 3": { - "value": "B.1.2" - }, - "GRI Lineage Level 4": { - "value": "B.1.2" - }, - "GRI Lineage Level 5": { - "value": "B.1.2" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: I377L", - "GRI Lineage Root": "B.1.2.0" - }, - "mutations": { - "E2": [ - "I377L" - ], - "nuc": [ - "C6320T", - "A9692C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P98L; E2: A413V; nsP1: A98V, E499A; nsP2: K225R, E506G, H617Y; nsP3: K147R; nsP4: A601T" - }, - "mutations": { - "CP": [ - "P98L" - ], - "E2": [ - "A413V" - ], - "nsP1": [ - "A98V", - "E499A" - ], - "nsP2": [ - "K225R", - "E506G", - "H617Y" - ], - "nsP3": [ - "K147R" - ], - "nsP4": [ - "A601T" - ], - "nuc": [ - "C337T", - "C1367T", - "C1455T", - "A1540C", - "T2135C", - "A2323G", - "A3166G", - "C3479T", - "C3498T", - "T3524C", - "A4471G", - "C4697T", - "C6260T", - "T6821C", - "G7503A", - "C7854T", - "T9235C", - "C9801T" - ] - } - }, - "name": "AF448539.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.9464863610503239, - "Honduras": 0.006811790529844044, - "Mexico": 0.007129560809338911, - "Nicaragua": 0.005083926760366196 - }, - "entropy": 0.3432754478744189, - "value": "Guatemala" - }, - "div": 0.2191663958819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1980.0013661202186, - 1980.8989071038252 - ], - "value": 1980.0013661202186 - }, - "region": { - "confidence": { - "AUSNZ": 0.0018796576819654469, - "LA,C": 0.9973507208077866 - }, - "entropy": 0.019961636854750504, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1980": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1980" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.2" - }, - "GRI Lineage Level 3": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.2.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: K3T; nsP3: S62L" - }, - "mutations": { - "nsP1": [ - "K3T" - ], - "nsP3": [ - "S62L" - ], - "nuc": [ - "A26C", - "T28C", - "A52C", - "G3089A", - "C4133T", - "C4216T", - "T7091C", - "C9709T" - ] - } - }, - "name": "KC344438.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.2182799958819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1978.0013698630137, - 1978.4982939224558 - ], - "value": 1978.0013698630137 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1978": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1978" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.2" - }, - "GRI Lineage Level 3": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.2.0" - } - } - } - ], - "name": "NODE_0000115", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999978534606677 - }, - "entropy": 0.000035254839385829884, - "value": "Guatemala" - }, - "div": 0.2175702258819019, - "num_date": { - "confidence": [ - 1977.635853432928, - 1978.3507818884996 - ], - "value": 1977.9181830536886 - }, - "region": { - "confidence": { - "LA,C": 0.9999999199468138 - }, - "entropy": 0.0000014296358087577535, - "value": "LA,C" - }, - "year": { - "confidence": { - "1977": 0.47325474277264784, - "1978": 0.49031985838039005, - "1980": 0.016317940974162212 - }, - "entropy": 0.92542665932465, - "value": "1978" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.2" - }, - "GRI Lineage Level 3": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.2.0" - } - } - } - ], - "name": "NODE_0000114", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999972622635 - }, - "entropy": 6.260178621945493e-8, - "value": "Guatemala" - }, - "div": 0.2173934158819019, - "num_date": { - "confidence": [ - 1977.5271192490845, - 1977.99782892531 - ], - "value": 1977.859545640523 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999255869 - }, - "entropy": 1.8385568258034357e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1977": 0.9923163293989404, - "1978": 0.00719528844388795 - }, - "entropy": 0.04847828554873572, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.2" - }, - "GRI Lineage Level 3": { - "value": "B.1.2" - }, - "GRI Lineage Level 4": { - "value": "B.1.2" - }, - "GRI Lineage Level 5": { - "value": "B.1.2" - } - } - } - ], - "name": "NODE_0000113", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999999435317756 - }, - "entropy": 0.0000011216002691295677, - "value": "Guatemala" - }, - "div": 0.21722073588190188, - "num_date": { - "confidence": [ - 1977.163770137296, - 1977.8716036301187 - ], - "value": 1977.5739429012879 - }, - "region": { - "confidence": { - "LA,C": 0.9999999985612646 - }, - "entropy": 3.1342346091610036e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1977": 0.9958710182580341, - "1978": 0.0031499566757776125 - }, - "entropy": 0.032691947737540035, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: S218N; nsP1: E106D; nsP2: H617Y; nsP3: S366P, L455M, L480F; nsP4: S604A" - }, - "mutations": { - "E2": [ - "S218N" - ], - "nsP1": [ - "E106D" - ], - "nsP2": [ - "H617Y" - ], - "nsP3": [ - "S366P", - "L455M", - "L480F" - ], - "nsP4": [ - "S604A" - ], - "nuc": [ - "G362T", - "G1289A", - "G1856A", - "C1865T", - "T2006C", - "A2108G", - "C2120A", - "A2150G", - "C2561T", - "C2717T", - "C3008T", - "C3296T", - "C3479T", - "C3498T", - "T3524C", - "T4200C", - "C4226T", - "T4232C", - "G4481C", - "T4586C", - "T4664C", - "C4749T", - "C4931T", - "T5127C", - "C5394A", - "A5471C", - "C6134T", - "C6398T", - "C6666T", - "T6714C", - "C6911T", - "T6959A", - "C7178T", - "C7196A", - "T7445C", - "T7512G", - "T7978C", - "C8110T", - "G8395A", - "A8713C", - "G9216A", - "A9508G", - "T9517C", - "A9721G", - "G9775A", - "C9874T", - "C10079T", - "C10147T", - "T10468C", - "G10489T", - "T11155C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: T162I; E2: S247P; nsP2: M446T; nsP3: S317F, A476V" - }, - "mutations": { - "E1": [ - "T162I" - ], - "E2": [ - "S247P" - ], - "nsP2": [ - "M446T" - ], - "nsP3": [ - "S317F", - "A476V" - ], - "nuc": [ - "C254T", - "C1544T", - "T2986C", - "C4981T", - "C5458T", - "C8122T", - "T9094C", - "T9124C", - "T9302C", - "C10485T", - "C10486T" - ] - } - }, - "name": "KC344466.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.21632869588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1971.7498328129957, - 1971.9986301369863 - ], - "value": 1971.9986301369863 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1971": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: N101H; nsP2: N669S" - }, - "mutations": { - "CP": [ - "N101H" - ], - "nsP2": [ - "N669S" - ], - "nuc": [ - "T887C", - "T1274C", - "A1292G", - "A1682G", - "C2129T", - "C2243T", - "C2342A", - "A2525G", - "A2822G", - "G3041A", - "T3287C", - "C3311T", - "C3317T", - "A3655G", - "T4211C", - "T4622C", - "A4718G", - "T4910A", - "C5606T", - "C5642T", - "C5924A", - "C6035T", - "G6251A", - "T6395A", - "T6434A", - "T6437C", - "C6545T", - "G6800A", - "T7040C", - "C7439A", - "A7862C", - "C8084T", - "T8461C", - "T8515C", - "A8983G", - "T9187G", - "G9283A", - "G9523A", - "A9748G", - "C9760T", - "T9958C", - "C10084T", - "T10397C", - "T10411C", - "T10600C", - "T10828C", - "T11218A", - "C11364T", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E117K; nsP2: Q560K; nsP3: S355L" - }, - "mutations": { - "E2": [ - "E117K" - ], - "nsP2": [ - "Q560K" - ], - "nsP3": [ - "S355L" - ], - "nuc": [ - "C578T", - "C1769T", - "C1928T", - "T1979C", - "C2045T", - "C2759T", - "G3089A", - "C3327A", - "C5095T", - "A5945G", - "T5957C", - "C8551T", - "G8912A", - "C9391T", - "T10339C", - "T10720C" - ] - } - }, - "name": "AF448537.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.005449471578861385, - "Guatemala": 0.11155770471272397, - "Honduras": 0.0054462351917534, - "Mexico": 0.840228270702515 - }, - "entropy": 0.6558710780408553, - "value": "Mexico" - }, - "div": 0.2211131558819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1993.0013698630137, - 1993.9986301369863 - ], - "value": 1993.9986301369863 - }, - "region": { - "confidence": { - "LA,C": 0.9992313844135547 - }, - "entropy": 0.006733202374960355, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1993": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1993" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: I487V" - }, - "mutations": { - "nsP1": [ - "I487V" - ], - "nuc": [ - "T710C", - "A1503G", - "C2426T", - "T3231C", - "C3254T", - "C4496T", - "C6782T", - "C10771T", - "T11095C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: Y180H; nsP2: A582V, A624T; nsP3: H401Y" - }, - "mutations": { - "E1": [ - "Y180H" - ], - "nsP2": [ - "A582V", - "A624T" - ], - "nsP3": [ - "H401Y" - ], - "nuc": [ - "A53G", - "A470G", - "C554T", - "T755C", - "C758T", - "T1955C", - "C2085T", - "C2855T", - "C3257T", - "C3326T", - "C3394T", - "G3519A", - "C3818T", - "G3878A", - "C5232T", - "T5429C", - "C5607T", - "T6651C", - "C6722T", - "C6758T", - "A6974T", - "C7062T", - "T7158C", - "A7256G", - "T7328C", - "T8080C", - "C8134T", - "T9295C", - "T9730C", - "T10099C", - "T10538C" - ] - } - }, - "name": "KC344515.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.22324621588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2001.0013698630137, - 2001.898904109589 - ], - "value": 2001.0013698630137 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2001": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A1556G", - "A2567G", - "A2969G", - "C10027T" - ] - }, - "labels": { - "GRI Lineage Root": "B.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2579T", - "A4292G", - "A6224G", - "A6287G", - "T6851G", - "C10420T", - "C10873T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "AF448538.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 0.003155555168451705, - "Mexico": 0.9883325825644077 - }, - "entropy": 0.0913600436780813, - "value": "Mexico" - }, - "div": 0.2214632858819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1996.8884248561744, - 1996.9926551165088 - ], - "value": 1996.9467447713982 - }, - "region": { - "confidence": { - "LA,C": 0.9994872349426175 - }, - "entropy": 0.004705807789457049, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1996": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: E117K", - "GRI Lineage Root": "B.1.0.1" - }, - "mutations": { - "E2": [ - "E117K" - ], - "nuc": [ - "G8912A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "AF448535.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." - }, - "country": { - "confidence": { - "Belize": 0.001405046941717241, - "Colombia": 0.0012799051177942, - "Guatemala": 0.003723608043105253, - "Mexico": 0.9837872975630536 - }, - "entropy": 0.12249311852547119, - "value": "Mexico" - }, - "div": 0.2215516558819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1996.9183399466572, - 1996.9986338797814 - ], - "value": 1996.966539094537 - }, - "region": { - "confidence": { - "LA,C": 0.9992325035500857 - }, - "entropy": 0.006734068093929818, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1996": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: D179A; nsP3: V393E, M455R" - }, - "mutations": { - "nsP1": [ - "D179A" - ], - "nsP3": [ - "V393E", - "M455R" - ], - "nuc": [ - "A580C", - "T5209A", - "T5395G" - ] - } - }, - "name": "AF448536.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Holmes,E.C., Woelk,C.H. and Weaver,S.C." - }, - "country": { - "confidence": { - "Belize": 0.001405046941717241, - "Colombia": 0.0012799051177942, - "Guatemala": 0.003723608043105253, - "Mexico": 0.9837872975630536 - }, - "entropy": 0.12249311852547119, - "value": "Mexico" - }, - "div": 0.22181514588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1996.951526456934, - 1996.9986338797814 - ], - "value": 1996.9986338797814 - }, - "region": { - "confidence": { - "LA,C": 0.9992325035500857 - }, - "entropy": 0.006734068093929818, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1996": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.1" - } - } - } - ], - "name": "NODE_0000121", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.0031555551684517057, - "Mexico": 0.9883325825644078 - }, - "entropy": 0.09136004367808119, - "value": "Mexico" - }, - "div": 0.2215493058819019, - "num_date": { - "confidence": [ - 1996.8979218460709, - 1996.9857930765627 - ], - "value": 1996.950360980911 - }, - "region": { - "confidence": { - "LA,C": 0.9994872349426175 - }, - "entropy": 0.004705807789457051, - "value": "LA,C" - }, - "year": { - "confidence": { - "1996": 0.9999967699909821 - }, - "entropy": 0.00005022407948538215, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.1" - } - } - } - ], - "name": "NODE_0000120", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.0025831823811428684, - "Mexico": 0.9929008422561064 - }, - "entropy": 0.05799843403921755, - "value": "Mexico" - }, - "div": 0.22146093588190188, - "num_date": { - "confidence": [ - 1996.867129492375, - 1996.978884580797 - ], - "value": 1996.9309273855781 - }, - "region": { - "confidence": { - "LA,C": 0.9997421112619905 - }, - "entropy": 0.0025438651008242545, - "value": "LA,C" - }, - "year": { - "confidence": { - "1996": 0.9994205167830799 - }, - "entropy": 0.005882657334751629, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: A375T" - }, - "mutations": { - "E2": [ - "A375T" - ], - "nuc": [ - "T1604G", - "G2474A", - "C2666T", - "A6479G", - "G9686A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: N167T; nsP3: S335P" - }, - "mutations": { - "nsP1": [ - "N167T" - ], - "nsP3": [ - "S335P" - ], - "nuc": [ - "C107T", - "A544C", - "A1319G", - "G1670A", - "T1712C", - "G2258A", - "T3500C", - "T3600C", - "T5034C", - "C5963T", - "G6362T", - "T7642C", - "T8032C", - "A11002T", - "T11116C", - "T11170C", - "T11275G" - ] - } - }, - "name": "AY823299.1", - "node_attrs": { - "author": { - "author": "Weaver,S.C.", - "value": "Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.2227920458819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2001.0013698630137, - 2001.4280063499443 - ], - "value": 2001.0013698630137 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2001": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A26C", - "C807T", - "C1340T", - "C3287T", - "G3380A", - "C4112T", - "T5993C", - "T6062A", - "A7511T", - "C8590T", - "C9019T", - "T9326C", - "C9622T", - "C10348A" - ] - }, - "labels": { - "GRI Lineage Root": "B.1.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: H101N; E1: T389A; E2: I20V, I394V; nsP2: F659Y; nsP3: T197I, R467K" - }, - "mutations": { - "CP": [ - "H101N" - ], - "E1": [ - "T389A" - ], - "E2": [ - "I20V", - "I394V" - ], - "nsP2": [ - "F659Y" - ], - "nsP3": [ - "T197I", - "R467K" - ], - "nuc": [ - "C1022T", - "G1286A", - "C3209T", - "C3366T", - "T3625A", - "G4286A", - "C4621T", - "T5270C", - "C5354T", - "G5431A", - "G6311A", - "C6869T", - "T6911C", - "C7406T", - "C7862A", - "C8000T", - "C8134T", - "A8621G", - "A9202G", - "G9244A", - "C9349T", - "T9388C", - "C9682T", - "A9743G", - "C9796T", - "T10087C", - "T10159C", - "C10481T", - "T10886C", - "G10966T", - "A11165G", - "A11362C", - "G11431T", - "T11432G" - ] - } - }, - "name": "KC344465.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.2255565658819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.5630136986301, - 2010.5630136986301 - ], - "value": 2010.5630136986301 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: T6S, I135V", - "GRI Lineage Root": "B.1.0.0.0" - }, - "mutations": { - "E1": [ - "T6S", - "I135V" - ], - "nuc": [ - "G329A", - "C342T", - "C905T", - "C1175T", - "T3617C", - "A4442G", - "T4529C", - "C4979T", - "T6272C", - "C7395T", - "T8173C", - "C8875T", - "C9265T", - "T9670C", - "C9826T", - "A10016T", - "A10403G", - "T11200C", - "T11423C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: E76K" - }, - "mutations": { - "E1": [ - "E76K" - ], - "nuc": [ - "C26A", - "G10226A", - "G10228A", - "T10246G" - ] - } - }, - "name": "KC344482.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.2245686858819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2003.5921988768512, - 2003.7301007379463 - ], - "value": 2003.6466164960507 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2003": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344464.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.2242170358819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2003.5876712328768, - 2003.5876712328768 - ], - "value": 2003.5876712328768 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2003": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.0.0" - } - } - } - ], - "name": "NODE_0000124", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999983451843 - }, - "entropy": 3.8701746023064604e-8, - "value": "Mexico" - }, - "div": 0.2242148758819019, - "num_date": { - "confidence": [ - 2003.5498199458248, - 2003.5876712328768 - ], - "value": 2003.5862618452275 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999563484 - }, - "entropy": 1.1003395426235257e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2003": 0.9996331346087263 - }, - "entropy": 0.004216993823418924, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.0.0" - } - } - } - ], - "name": "NODE_0000123", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999992860344084 - }, - "entropy": 0.000012412288214768794, - "value": "Mexico" - }, - "div": 0.2225264058819019, - "num_date": { - "confidence": [ - 2003.1380196291427, - 2003.3618425511595 - ], - "value": 2003.2785245022478 - }, - "region": { - "confidence": { - "LA,C": 0.9999999817166808 - }, - "entropy": 3.51858436130557e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1996": 0.003887546293041835, - "2001": 0.058988525428155164, - "2003": 0.840640525005853, - "2010": 0.005711659222016551 - }, - "entropy": 0.9247427621972855, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0.0" - } - } - } - ], - "name": "NODE_0000122", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.999998333415807 - }, - "entropy": 0.000025737522452142656, - "value": "Mexico" - }, - "div": 0.2212835258819019, - "num_date": { - "confidence": [ - 2000.554004448947, - 2001.2112173881585 - ], - "value": 2000.748407381879 - }, - "region": { - "confidence": { - "LA,C": 0.999999991198316 - }, - "entropy": 1.7578812468547175e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1996": 0.019835980267805496, - "2000": 0.0030170381550296476, - "2001": 0.8802825624652323, - "2003": 0.038962228751428435 - }, - "entropy": 0.7176047702929464, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0" - } - } - } - ], - "name": "NODE_0000119", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.0020064595615257286, - "Mexico": 0.997492193501442 - }, - "entropy": 0.01999443885790899, - "value": "Mexico" - }, - "div": 0.2208406458819019, - "num_date": { - "confidence": [ - 1996.7810909081288, - 1996.9262274575742 - ], - "value": 1996.8601620749803 - }, - "region": { - "confidence": { - "LA,C": 0.9999971325922873 - }, - "entropy": 0.000040841869916604786, - "value": "LA,C" - }, - "year": { - "confidence": { - "1993": 0.01258397235133493, - "1996": 0.8577204163639007, - "2001": 0.07954953645688212, - "2003": 0.002149620986192332 - }, - "entropy": 0.7282799397172084, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1.0" - }, - "GRI Lineage Level 3": { - "value": "B.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.1.0" - } - } - } - ], - "name": "NODE_0000118", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.002103890648961362, - "Mexico": 0.9974079205202954 - }, - "entropy": 0.02046434569683582, - "value": "Mexico" - }, - "div": 0.2204870758819019, - "num_date": { - "confidence": [ - 1996.6552859496562, - 1996.8742511554344 - ], - "value": 1996.7680795049514 - }, - "region": { - "confidence": { - "LA,C": 0.9999986199030579 - }, - "entropy": 0.000020597113076176467, - "value": "LA,C" - }, - "year": { - "confidence": { - "1993": 0.02846742684216498, - "1996": 0.7708981217723498, - "2001": 0.09521553889176029, - "2003": 0.003664995915231236 - }, - "entropy": 1.163401970308926, - "value": "1996" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - } - ], - "name": "NODE_0000117", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.00449662667167951, - "Guatemala": 0.11174425753417429, - "Honduras": 0.004612011971343789, - "Mexico": 0.8495878359474808 - }, - "entropy": 0.6041895195746211, - "value": "Mexico" - }, - "div": 0.21969026588190188, - "num_date": { - "confidence": [ - 1992.3914856608862, - 1993.9771991944551 - ], - "value": 1993.506555324584 - }, - "region": { - "confidence": { - "LA,C": 0.9998583737293588 - }, - "entropy": 0.0014705269804937702, - "value": "LA,C" - }, - "year": { - "confidence": { - "1993": 0.7507221881654688, - "1995": 0.007318497809494184, - "1996": 0.04875032147849921, - "2001": 0.011495409874177404 - }, - "entropy": 1.4465254892483113, - "value": "1993" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - } - ], - "name": "NODE_0000116", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999717171601994 - }, - "entropy": 0.00035123767081357923, - "value": "Guatemala" - }, - "div": 0.21533748588190188, - "num_date": { - "confidence": [ - 1971.7939992327217, - 1971.9295672982137 - ], - "value": 1971.869635663749 - }, - "region": { - "confidence": { - "LA,C": 0.9999999836325757 - }, - "entropy": 3.1680210203602445e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.013920650852004538, - "1970": 0.004154546286094379, - "1971": 0.9058406074118865, - "1977": 0.0034658225023003904 - }, - "entropy": 0.6557061270734019, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - } - ], - "name": "NODE_0000112", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999958388863298 - }, - "entropy": 0.00006253295667401532, - "value": "Guatemala" - }, - "div": 0.21070153588190188, - "num_date": { - "confidence": [ - 1970.542909073422, - 1971.0494801130208 - ], - "value": 1970.8732767376696 - }, - "region": { - "confidence": { - "LA,C": 0.9999999463341258 - }, - "entropy": 9.74968672108614e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.08885170022672399, - "1970": 0.020398460335733948, - "1971": 0.5650595436281527, - "1977": 0.017759451116418176 - }, - "entropy": 2.2125320969176796, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - } - ], - "name": "NODE_0000105", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9999699829709855 - }, - "entropy": 0.00035807198551714555, - "value": "Guatemala" - }, - "div": 0.21006070588190187, - "num_date": { - "confidence": [ - 1968.2738212719994, - 1968.5401018506777 - ], - "value": 1968.4031627041827 - }, - "region": { - "confidence": { - "LA,C": 0.9999999733285346 - }, - "entropy": 5.031960364826857e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.023557176186753997, - "1968": 0.46190138785278056, - "1970": 0.061659155251583775, - "1971": 0.20313486839651387 - }, - "entropy": 2.2247452949925317, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.1" - }, - "GRI Lineage Level 2": { - "value": "B.1" - }, - "GRI Lineage Level 3": { - "value": "B.1" - }, - "GRI Lineage Level 4": { - "value": "B.1" - }, - "GRI Lineage Level 5": { - "value": "B.1" - } - } - } - ], - "name": "NODE_0000097", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.9745643540803324, - "Mexico": 0.024162143591509817 - }, - "entropy": 0.12557008013464294, - "value": "Guatemala" - }, - "div": 0.19603911588190187, - "num_date": { - "confidence": [ - 1963.4358511023638, - 1964.2861420488018 - ], - "value": 1963.6580044879552 - }, - "region": { - "confidence": { - "LA,C": 0.9999999333987232 - }, - "entropy": 0.0000011956074754607793, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.15613248434987517, - "1967": 0.3116386505753704, - "1968": 0.08039223597943491, - "1971": 0.01856953817862071 - }, - "entropy": 2.926926582846528, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: A360T, A362G, H391N, C447R" - }, - "mutations": { - "nsP3": [ - "A360T", - "A362G", - "H391N", - "C447R" - ], - "nuc": [ - "C452T", - "C599T", - "T1191C", - "C2660T", - "C2717T", - "T2879C", - "T3935C", - "G3974A", - "G4244T", - "T4829C", - "T4907C", - "G5109A", - "C5116G", - "C5202A", - "T5370C", - "T5720C", - "T5870C", - "G5984T", - "G6131A", - "C6422T", - "T6477C", - "C6881T", - "C7612T", - "A7688C", - "A7942G", - "T8509C", - "T8689C", - "A9379G", - "T9478C", - "A9598G", - "C9622T", - "G9895A", - "T10261C", - "C10672A", - "T11056C", - "T11161C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: N101P, G104S, V136I; E2: P150L, V414I; nsP2: V750A; nsP3: E354V, S357L, T371A, V376M, H401Y, S408N, V421A; nsP4: I75V, A231V" - }, - "mutations": { - "CP": [ - "N101P", - "G104S", - "V136I" - ], - "E2": [ - "P150L", - "V414I" - ], - "nsP2": [ - "V750A" - ], - "nsP3": [ - "E354V", - "S357L", - "T371A", - "V376M", - "H401Y", - "S408N", - "V421A" - ], - "nsP4": [ - "I75V", - "A231V" - ], - "nuc": [ - "C80T", - "C228T", - "T401C", - "T620C", - "T692C", - "C815T", - "C905T", - "A926T", - "C1028T", - "G1049A", - "C1106T", - "T1151C", - "G1205A", - "C1220T", - "T1247C", - "T1430C", - "T1469C", - "G1547A", - "T1655A", - "C1667T", - "C1733T", - "A1958G", - "T1967C", - "C1991T", - "C2213T", - "T2414C", - "C2726T", - "A2732G", - "T2738C", - "A2744G", - "A2810G", - "C2849T", - "C3195T", - "T3242A", - "T3417C", - "T3425C", - "T3464C", - "T3743C", - "C3836T", - "T3898C", - "G4013A", - "C4100T", - "A4127T", - "A4160G", - "A4289G", - "T4316C", - "C4619T", - "C4808T", - "C4886T", - "A4895G", - "T4976C", - "A5092T", - "C5101T", - "A5142G", - "G5157A", - "C5232T", - "G5254A", - "T5293C", - "C5318T", - "C5354T", - "G5381A", - "T5385C", - "C5444T", - "A5468G", - "C5600T", - "C5867T", - "A5925G", - "A6182G", - "C6212T", - "C6394T", - "T6497C", - "T6506C", - "G6533A", - "G6602A", - "C6704T", - "G6776A", - "C7100T", - "C7103T", - "C7193T", - "C7196T", - "T7211C", - "T7217C", - "T7262C", - "G7280A", - "T7421C", - "T7693C", - "C7771T", - "C7813T", - "A7862C", - "A7863C", - "T7864C", - "T7867C", - "G7871A", - "C7918T", - "G7967A", - "C8026T", - "C8038T", - "C8041T", - "T8045C", - "A8065G", - "C8257T", - "T8401C", - "G8431A", - "C8576T", - "G8707A", - "T8866C", - "C8920T", - "C9012T", - "T9013G", - "A9097G", - "T9172C", - "C9184T", - "T9187A", - "A9367G", - "T9493C", - "T9604C", - "T9682C", - "G9688A", - "C9781A", - "G9803A", - "G9853A", - "C10138T", - "C10180T", - "G10198A", - "G10327A", - "A10333G", - "A10639G", - "C10789T", - "T11155C", - "T11393C" - ] - } - }, - "name": "KC344439.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.20874095588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1967.0013698630137, - 1967.898904109589 - ], - "value": 1967.0013698630137 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: L599F, E653D; nsP3: N337S, E399D, R402H, R415C, N433S, T435A, S517A" - }, - "mutations": { - "nsP2": [ - "L599F", - "E653D" - ], - "nsP3": [ - "N337S", - "E399D", - "R402H", - "R415C", - "N433S", - "T435A", - "S517A" - ], - "nuc": [ - "G209A", - "A299G", - "C593T", - "C1485T", - "C1499T", - "C1553T", - "A1739G", - "C1769T", - "C1802T", - "G1820A", - "A2012G", - "T2228C", - "G2390A", - "C2510T", - "C2846T", - "G2918A", - "T3065C", - "T3416C", - "A3446C", - "T3500C", - "A3608T", - "C3660T", - "T3851A", - "G4115A", - "T4169C", - "T4170C", - "G4202A", - "A4292G", - "T4325C", - "T4445C", - "T4628C", - "T4694C", - "T4700C", - "C4811T", - "T4872C", - "T4955C", - "C5018T", - "A5041G", - "A5228T", - "G5231A", - "G5236A", - "C5274T", - "A5329G", - "A5334G", - "T5580G", - "T5603C", - "T5735C", - "C5831T", - "C6035T", - "T6204C", - "C6236A", - "A6269G", - "A6299G", - "T6431C", - "C6869T", - "C6953T", - "T7091C", - "G7121A", - "C7214T", - "C7247T", - "T7259C", - "G7268A", - "T7726C", - "A7855C", - "T8095A", - "C8239T", - "C8260T", - "A8317G", - "C8390T", - "C8527T", - "A8917G", - "A9076T", - "A9160G", - "T9349C", - "T9409C", - "T9668C", - "T9727C", - "T10204C", - "C10366T", - "C10459T", - "T10576C", - "G10717T", - "C10912T", - "C10960T", - "T11083C", - "T11323C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T3428C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: N84S; nsP3: A333T" - }, - "mutations": { - "CP": [ - "N84S" - ], - "nsP3": [ - "A333T" - ], - "nuc": [ - "T473C", - "G1778C", - "T1883C", - "G2222A", - "T2672C", - "T2687C", - "T2819C", - "A3062G", - "C3116T", - "A3266G", - "C3401T", - "T4025C", - "C4328T", - "A4661G", - "C4694T", - "C4931T", - "G5028A", - "T5225C", - "C5306T", - "T5399C", - "C5672T", - "C5699T", - "T7028C", - "C7702T", - "G7738A", - "A7744G", - "A7812G", - "C8833T", - "C9223T", - "C9461T", - "C9481T", - "T10195C", - "C10405T", - "A11104G", - "C11236T" - ] - } - }, - "name": "KC344457.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21012169588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1963.6150684931506, - 1963.6150684931506 - ], - "value": 1963.6150684931506 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1963": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T3194C" - ] - }, - "labels": { - "GRI Lineage Root": "B.2" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: I107F; nsP3: V150A, Q405R; nsP4: C511S, A554T, V576A" - }, - "mutations": { - "nsP1": [ - "I107F" - ], - "nsP3": [ - "V150A", - "Q405R" - ], - "nsP4": [ - "C511S", - "A554T", - "V576A" - ], - "nuc": [ - "A363T", - "C2249T", - "A2543G", - "A3149G", - "G3173A", - "G3371T", - "C3410A", - "C3836T", - "C3935T", - "T3947C", - "G4040A", - "C4088T", - "T4331C", - "T4480C", - "A4577G", - "A5245G", - "T5963C", - "T5984G", - "C6065T", - "C6704T", - "C7184T", - "T7229C", - "T7233A", - "G7362A", - "T7429C", - "C8158T", - "A8344G", - "G8584A", - "C9326T", - "T9841A", - "C10540T", - "A10672T" - ] - } - }, - "name": "KC344446.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21010539588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1965.0013698630137, - 1965.897578383416 - ], - "value": 1965.0013698630137 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1965": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1965" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2" - }, - "GRI Lineage Level 3": { - "value": "B.2" - }, - "GRI Lineage Level 4": { - "value": "B.2" - }, - "GRI Lineage Level 5": { - "value": "B.2" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: T356I" - }, - "mutations": { - "nsP3": [ - "T356I" - ], - "nuc": [ - "T611C", - "T1409C", - "T1691C", - "G2285A", - "C2450T", - "G4385A", - "G4631A", - "A4817T", - "C5036T", - "C5098T", - "C5267T", - "C6365T", - "T6710C", - "C7711T", - "T8812C", - "A9319G", - "C10564T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T7028C" - ] - }, - "labels": { - "GRI Lineage Root": "B.2.1" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: I487L; nsP3: R364*, E378V, V406A" - }, - "mutations": { - "nsP1": [ - "I487L" - ], - "nsP3": [ - "R364*", - "E378V", - "V406A" - ], - "nuc": [ - "A26T", - "A1503T", - "A3851G", - "A3890G", - "C4325T", - "A5121T", - "A5164T", - "A5216G", - "T5248C", - "C5642T", - "C7025T", - "C8062A", - "T8173C", - "C8356T", - "T8506C", - "C8581T", - "A9775G" - ] - } - }, - "name": "KC344448.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21017834588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1969.0013698630137, - 1969.5438027293794 - ], - "value": 1969.0013698630137 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1969": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.1" - }, - "GRI Lineage Level 3": { - "value": "B.2.1" - }, - "GRI Lineage Level 4": { - "value": "B.2.1" - }, - "GRI Lineage Level 5": { - "value": "B.2.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: R222H, P480S; nsP2: V229I; nsP3: R457K" - }, - "mutations": { - "nsP1": [ - "R222H", - "P480S" - ], - "nsP2": [ - "V229I" - ], - "nsP3": [ - "R457K" - ], - "nuc": [ - "G709A", - "C1403A", - "C1482T", - "C1721T", - "G2334A", - "G2702A", - "T3417C", - "G5401A", - "C5714T", - "A8341G", - "C9391T", - "C10873T", - "T11116C" - ] - } - }, - "name": "KC344445.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.20982980588190187, - "host": { - "value": "Culex opisthopus" - }, - "num_date": { - "confidence": [ - 1964.5669398907103, - 1964.5669398907103 - ], - "value": 1964.5669398907103 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1964": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1964" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.1" - }, - "GRI Lineage Level 3": { - "value": "B.2.1" - }, - "GRI Lineage Level 4": { - "value": "B.2.1" - }, - "GRI Lineage Level 5": { - "value": "B.2.1" - } - } - } - ], - "name": "NODE_0000046", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999011754671 - }, - "entropy": 0.0000019127498182688758, - "value": "Mexico" - }, - "div": 0.20866713588190186, - "num_date": { - "confidence": [ - 1964.1866270495382, - 1964.4151009739505 - ], - "value": 1964.319466169116 - }, - "region": { - "confidence": { - "LA,C": 0.999999997350368 - }, - "entropy": 5.61054110995653e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.21750033003782518, - "1964": 0.7152198527586114, - "1967": 0.0023767339713479632, - "1969": 0.008041753491008283 - }, - "entropy": 1.0021692320625797, - "value": "1964" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.1" - }, - "GRI Lineage Level 3": { - "value": "B.2.1" - }, - "GRI Lineage Level 4": { - "value": "B.2.1" - }, - "GRI Lineage Level 5": { - "value": "B.2.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C5699T", - "C6431T", - "T9526C" - ] - }, - "labels": { - "GRI Lineage Root": "B.2.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P22S" - }, - "mutations": { - "CP": [ - "P22S" - ], - "nuc": [ - "C3059T", - "C7625T", - "C8623T", - "A9508G" - ] - } - }, - "name": "KC344431.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.20938039588190185, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1963.610559192821, - 1963.664383561644 - ], - "value": 1963.664383561644 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1963": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.0" - }, - "GRI Lineage Level 3": { - "value": "B.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.2.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: Q48R", - "GRI Lineage Root": "B.2.0.0" - }, - "mutations": { - "nsP3": [ - "Q48R" - ], - "nuc": [ - "C3008T", - "A4174G", - "T8350C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C3195T" - ] - } - }, - "name": "KC344447.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.20937715588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1966.2479452054795, - 1966.3158694878114 - ], - "value": 1966.2479452054795 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1966": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1966" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.0" - }, - "GRI Lineage Level 3": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.2.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: M10T; nsP3: A404V" - }, - "mutations": { - "CP": [ - "M10T" - ], - "nsP3": [ - "A404V" - ], - "nuc": [ - "C5242T", - "T7590C", - "T7993A" - ] - } - }, - "name": "KC344440.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.20955611588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1966.0013698630137, - 1966.2557002567607 - ], - "value": 1966.0290938490941 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1966": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1966" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.0" - }, - "GRI Lineage Level 3": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.2.0.0" - } - } - } - ], - "name": "NODE_0000132", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999857373616 - }, - "entropy": 3.035311111921907e-7, - "value": "Mexico" - }, - "div": 0.20928847588190186, - "num_date": { - "confidence": [ - 1965.9109865156186, - 1966.2081995465294 - ], - "value": 1965.9893263661456 - }, - "region": { - "confidence": { - "LA,C": 0.9999999996079386 - }, - "entropy": 9.048244755769375e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1966": 0.9994991710705093 - }, - "entropy": 0.005673349258704359, - "value": "1966" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.0" - }, - "GRI Lineage Level 3": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.2.0.0" - } - } - } - ], - "name": "NODE_0000131", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.999999988955258 - }, - "entropy": 2.3786296742039585e-7, - "value": "Mexico" - }, - "div": 0.20902202588190186, - "num_date": { - "confidence": [ - 1963.6220692508405, - 1963.6554411159746 - ], - "value": 1963.6399723105667 - }, - "region": { - "confidence": { - "LA,C": 0.9999999996964396 - }, - "entropy": 7.082723200527892e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.9964790287032511, - "1964": 0.0015073938956632058 - }, - "entropy": 0.031218841203783026, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2.0" - }, - "GRI Lineage Level 3": { - "value": "B.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.2.0" - } - } - } - ], - "name": "NODE_0000129", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999966700943 - }, - "entropy": 7.566953811171254e-8, - "value": "Mexico" - }, - "div": 0.20866713588190186, - "num_date": { - "confidence": [ - 1963.578412074794, - 1963.6361492564426 - ], - "value": 1963.6102394124862 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999075971 - }, - "entropy": 2.263737694238608e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.9937652059328621, - "1964": 0.0035004773841499654 - }, - "entropy": 0.049227039235750863, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2" - }, - "GRI Lineage Level 3": { - "value": "B.2" - }, - "GRI Lineage Level 4": { - "value": "B.2" - }, - "GRI Lineage Level 5": { - "value": "B.2" - } - } - } - ], - "name": "NODE_0000128", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.99999999252859 - }, - "entropy": 1.6362103607629216e-7, - "value": "Mexico" - }, - "div": 0.20715389588190186, - "num_date": { - "confidence": [ - 1963.395785233851, - 1963.4920773781848 - ], - "value": 1963.443713742875 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997986364 - }, - "entropy": 4.779875006549433e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.9940129806949894, - "1964": 0.0018422122987630952, - "1965": 0.0015528762871015395, - "1967": 0.0013780331100820475 - }, - "entropy": 0.049156120091427294, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.2" - }, - "GRI Lineage Level 2": { - "value": "B.2" - }, - "GRI Lineage Level 3": { - "value": "B.2" - }, - "GRI Lineage Level 4": { - "value": "B.2" - }, - "GRI Lineage Level 5": { - "value": "B.2" - } - } - } - ], - "name": "NODE_0000127", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999616830415 - }, - "entropy": 7.208258070380475e-7, - "value": "Mexico" - }, - "div": 0.20706940588190187, - "num_date": { - "confidence": [ - 1963.371511035256, - 1963.4667407039424 - ], - "value": 1963.4304868890383 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999737482 - }, - "entropy": 6.7412061620103e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.9956160346104493, - "1967": 0.0023469651442720096 - }, - "entropy": 0.03623164879658071, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T1622C", - "C3195T", - "C3992T", - "T7028C", - "C10558T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP2: F599L; nsP3: T15M, Q405R; nsP4: S590I" - }, - "mutations": { - "nsP2": [ - "F599L" - ], - "nsP3": [ - "T15M", - "Q405R" - ], - "nsP4": [ - "S590I" - ], - "nuc": [ - "C464T", - "T566C", - "T620C", - "C638T", - "G1433T", - "A1760G", - "C1964T", - "A2543G", - "A3149G", - "T3444C", - "C3552T", - "C3833T", - "G4040A", - "C4075T", - "C4088T", - "T4340C", - "A4577G", - "A5245G", - "C5318T", - "T5963C", - "T6062A", - "C6419T", - "T6422C", - "A6614G", - "C6704T", - "C6812T", - "T7229C", - "T7328C", - "G7471T", - "G7714A", - "C7855A", - "G8104A", - "C8149T", - "C8164T", - "T8413C", - "C8497T", - "C8623T", - "T8798C", - "T9235C", - "C9409T", - "T9946C", - "T10630C", - "A11331C", - "C11423T" - ] - } - }, - "name": "KC344433.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Belize": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Belize" - }, - "div": 0.21121641588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1967.0013698630137, - 1967.898904109589 - ], - "value": 1967.0013698630137 - }, - "place_of_collection": { - "value": "Belize" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: P97T; nsP2: S778T; nsP3: S381G, A389T, Q395L; nsP4: K118R" - }, - "mutations": { - "CP": [ - "P97T" - ], - "nsP2": [ - "S778T" - ], - "nsP3": [ - "S381G", - "A389T", - "Q395L" - ], - "nsP4": [ - "K118R" - ], - "nuc": [ - "T473C", - "C515T", - "C809T", - "G1412A", - "A1790G", - "C1796T", - "T1883C", - "G2318A", - "A2652C", - "G2801A", - "C3008T", - "T3044C", - "G3137A", - "A3266G", - "T3494C", - "A3554T", - "T3623C", - "T3857C", - "T3981A", - "A4034G", - "G4058A", - "C4250T", - "T4298C", - "T4364C", - "T4596C", - "G4862T", - "C4872T", - "T4904C", - "A4919T", - "T4967C", - "A5172G", - "C5189T", - "G5196A", - "A5215T", - "A6055G", - "T6215C", - "C6296A", - "T6455C", - "C6608T", - "T6714C", - "C6852T", - "G6857A", - "C7124T", - "T7247A", - "C7702T", - "G7738A", - "G7747A", - "C7850A", - "G7975A", - "T7978C", - "C8170T", - "T8242C", - "G8314A", - "C8407T", - "C8408T", - "G8473A", - "C8581T", - "G8593A", - "C8782T", - "C8861T", - "C8944T", - "C8980T", - "T9076C", - "C9250T", - "C9403T", - "A9406C", - "A9616G", - "T9643C", - "C9805T", - "T10048C", - "C10312T", - "G10426A", - "G10684A", - "T11036C", - "A11191G", - "T11200A", - "C11236T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: S247L; nsP1: Q488H; nsP3: M218V, A331T, S335P, S355L, *367C, G381D" - }, - "mutations": { - "E2": [ - "S247L" - ], - "nsP1": [ - "Q488H" - ], - "nsP3": [ - "M218V", - "A331T", - "S335P", - "S355L", - "*367C", - "G381D" - ], - "nuc": [ - "T611C", - "C782A", - "G1508C", - "G2255A", - "G2258A", - "C2328T", - "T2405C", - "T2453C", - "T2819C", - "A2822G", - "T2850C", - "A3638G", - "C3788T", - "G3908A", - "C3998T", - "T4043C", - "C4535T", - "T4664C", - "A4683G", - "G5022A", - "T5034C", - "C5095T", - "A5132T", - "G5173A", - "A5336G", - "C6227T", - "T6254C", - "A6266C", - "C6368T", - "C6779T", - "C6791A", - "T7262C", - "C7409T", - "C8062A", - "C8590T", - "G8800A", - "C8998T", - "T9187C", - "C9241T", - "C9303T", - "C9391T", - "G10867A", - "C11311T" - ] - } - }, - "name": "KC344463.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21803026588190186, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 2009.823287671233, - 2009.823287671233 - ], - "value": 2009.823287671233 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "B.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S335P, S355L" - }, - "mutations": { - "nsP3": [ - "S335P", - "S355L" - ], - "nuc": [ - "T611C", - "T2453C", - "T2552C", - "T5034C", - "C5095T", - "C6227T", - "T6254C", - "A6266C", - "G6854A", - "T11326C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: T357K; nsP2: S731G; nsP3: V173I, E377G, H402R; nsP4: C511R" - }, - "mutations": { - "E2": [ - "T357K" - ], - "nsP2": [ - "S731G" - ], - "nsP3": [ - "V173I", - "E377G", - "H402R" - ], - "nsP4": [ - "C511R" - ], - "nuc": [ - "A26C", - "C758T", - "A909C", - "G1565A", - "A1577T", - "A1994G", - "C2531T", - "T3362G", - "C3780T", - "A3840G", - "A3968G", - "T3995C", - "G4548A", - "C4616T", - "A5161G", - "A5236G", - "A6257G", - "G6362A", - "A6509C", - "T6851C", - "T7233C", - "T7241A", - "T7253A", - "T7972C", - "T8137C", - "C8833T", - "C8932T", - "C9151A", - "C9196T", - "C9633A", - "G11008A", - "A11029G", - "G11379T" - ] - } - }, - "name": "KC344449.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21799654588190184, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2008.5177595628415, - 2008.5177595628415 - ], - "value": 2008.5177595628415 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2008": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: V376M, G451R, A527V; nsP4: V437I" - }, - "mutations": { - "nsP3": [ - "V376M", - "G451R", - "A527V" - ], - "nsP4": [ - "V437I" - ], - "nuc": [ - "G1727A", - "T2405C", - "C3410A", - "A3539G", - "A3923G", - "G4151A", - "T4727C", - "G4736A", - "A4877G", - "C4886T", - "G5157A", - "A5273G", - "G5382A", - "C5611T", - "A6341G", - "C6728T", - "G7001A", - "G7011A", - "C7172T", - "T7493C", - "C7494T", - "C8368T", - "C8455T", - "G8524A", - "A8734C", - "T9169C", - "C9178T", - "C9290T", - "G9418A", - "C9442T", - "G9460A", - "G9550T", - "C9637T", - "T9652C", - "A10120G", - "A10417G", - "C10540T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: H91Y; nsP2: A256V, K749R; nsP3: I92V" - }, - "mutations": { - "E2": [ - "H91Y" - ], - "nsP2": [ - "A256V", - "K749R" - ], - "nsP3": [ - "I92V" - ], - "nuc": [ - "A19T", - "T2057C", - "C2416T", - "T3425C", - "A3895G", - "A4305G", - "A4655G", - "C8012T", - "C8362T", - "C8834T", - "A9367T" - ] - } - }, - "name": "KC344481.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21932828588190184, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 2009.8205479452056, - 2009.8205479452056 - ], - "value": 2009.8205479452056 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: V39M; CP: G74S; nsP3: R364G, S403P", - "GRI Lineage Root": "B.0.2" - }, - "mutations": { - "6k": [ - "V39M" - ], - "CP": [ - "G74S" - ], - "nsP3": [ - "R364G", - "S403P" - ], - "nuc": [ - "C131T", - "G1436A", - "T3614C", - "A5121G", - "T5238C", - "T6098C", - "A6479G", - "A7551G", - "G7781A", - "A8902G", - "G9947A", - "C10786T", - "T11354G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344468.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21950799588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.5821917808219, - 2010.664383561644 - ], - "value": 2010.5896676779173 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2" - }, - "GRI Lineage Level 4": { - "value": "B.0.2" - }, - "GRI Lineage Level 5": { - "value": "B.0.2" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C11423T" - ] - }, - "labels": { - "GRI Lineage Root": "B.0.2.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344494.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21959504588190185, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.650684931507, - 2010.650684931507 - ], - "value": 2010.650684931507 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.2.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344495.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21959404588190184, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.650684931507, - 2010.650684931507 - ], - "value": 2010.650684931507 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.2.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344489.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21959404588190184, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.2.0" - } - } - } - ], - "name": "NODE_0000138", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999999995286 - }, - "entropy": 1.2448180587123819e-11, - "value": "Mexico" - }, - "div": 0.21959404588190184, - "num_date": { - "confidence": [ - 2010.6395942857114, - 2010.650684931507 - ], - "value": 2010.6492755438576 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999913 - }, - "entropy": -7.557088577026362e-13, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9999999868898642 - }, - "entropy": 2.724934142768068e-7, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.2.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.2.0" - } - } - } - ], - "name": "NODE_0000137", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999955291816 - }, - "entropy": 1.0030224178120182e-7, - "value": "Mexico" - }, - "div": 0.21950564588190186, - "num_date": { - "confidence": [ - 2010.5574895841748, - 2010.6343213500702 - ], - "value": 2010.5829129855465 - }, - "region": { - "confidence": { - "LA,C": 0.9999999998755894 - }, - "entropy": 3.0119758160674016e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9992282392563719 - }, - "entropy": 0.007489318322280897, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.2" - }, - "GRI Lineage Level 3": { - "value": "B.0.2" - }, - "GRI Lineage Level 4": { - "value": "B.0.2" - }, - "GRI Lineage Level 5": { - "value": "B.0.2" - } - } - } - ], - "name": "NODE_0000136", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999527213428 - }, - "entropy": 9.492038668858006e-7, - "value": "Mexico" - }, - "div": 0.21835278588190185, - "num_date": { - "confidence": [ - 2009.50819618041, - 2009.7088002730313 - ], - "value": 2009.6198769755447 - }, - "region": { - "confidence": { - "LA,C": 0.9999999987468648 - }, - "entropy": 2.7468655436196602e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1969": 0.0016129901766168213, - "2008": 0.044533177322166495, - "2009": 0.7860675853157219, - "2010": 0.13412256035938358 - }, - "entropy": 0.8490913107973861, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - } - ], - "name": "NODE_0000054", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999887113067757 - }, - "entropy": 0.00016601994862000722, - "value": "Mexico" - }, - "div": 0.21506581588190185, - "num_date": { - "confidence": [ - 2007.4341974734286, - 2007.862367627851 - ], - "value": 2007.6638205063275 - }, - "region": { - "confidence": { - "LA,C": 0.9999997936209004 - }, - "entropy": 0.0000034724764436529565, - "value": "LA,C" - }, - "year": { - "confidence": { - "1969": 0.007953614243314677, - "2008": 0.5997844711643502, - "2009": 0.17486893618324192, - "2010": 0.03730001756514992 - }, - "entropy": 1.7627798396956451, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T77C", - "T2177C", - "C3641T", - "T3674C", - "T8594C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S335P, E354A, S355L" - }, - "mutations": { - "nsP3": [ - "S335P", - "E354A", - "S355L" - ], - "nuc": [ - "C65T", - "T611C", - "T2552C", - "T4833C", - "T5034C", - "A5092C", - "C5095T", - "A5207G", - "T6170C", - "C6227T", - "T6254C", - "A6266C", - "G6854A", - "T10936C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP2: I431V, F599L; nsP3: A435V" - }, - "mutations": { - "nsP2": [ - "I431V", - "F599L" - ], - "nsP3": [ - "A435V" - ], - "nuc": [ - "A26C", - "C80T", - "T2540C", - "A2822T", - "A2940G", - "C3446A", - "C4694T", - "A5099G", - "C5204T", - "C5335T", - "G5387A", - "C5474T", - "T5645C", - "C6294T", - "C6368T", - "T7388C", - "T7786C", - "C7885T", - "C8062A", - "G8578A", - "T8695C", - "C9184T", - "C9904T", - "T10717A", - "T10777C", - "C11423T" - ] - } - }, - "name": "KC344451.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21852549588190184, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2008.5314207650274, - 2008.5314207650274 - ], - "value": 2008.5314207650274 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2008": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: S208T" - }, - "mutations": { - "E2": [ - "S208T" - ], - "nuc": [ - "T2453C", - "G2951A", - "G3302A", - "C3317T", - "G3380A", - "T3428C", - "T3747C", - "C4133T", - "G4190A", - "T4274A", - "C4784T", - "A4817G", - "T5174C", - "C5214T", - "G5906A", - "A6104G", - "T6404C", - "T6680C", - "C7184T", - "T7331C", - "C7448T", - "A7801G", - "T8080C", - "G8572A", - "T8641C", - "T9185A", - "T9466C", - "T10447C", - "T11275C", - "T11326C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344480.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21869556588190184, - "host": { - "value": "Culex taeniopus" - }, - "num_date": { - "confidence": [ - 2008.5314207650274, - 2008.5314207650274 - ], - "value": 2008.5314207650274 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2008": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C11423T" - ] - }, - "labels": { - "GRI Lineage Root": "B.0.1" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344453.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21861720588190184, - "host": { - "value": "Coquillettidia nigricans" - }, - "num_date": { - "confidence": [ - 2009.7191780821918, - 2009.7191780821918 - ], - "value": 2009.7191780821918 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344479.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21861680588190185, - "host": { - "value": "Mansonia titillans" - }, - "num_date": { - "confidence": [ - 2009.7191780821918, - 2009.7191780821918 - ], - "value": 2009.7191780821918 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "B.0.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344452.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21861680588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2009.7219178082191, - 2009.7219178082191 - ], - "value": 2009.7219178082191 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344478.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21861680588190185, - "host": { - "value": "Culex nigripalpus" - }, - "num_date": { - "confidence": [ - 2009.7191780821918, - 2009.7191780821918 - ], - "value": 2009.7191780821918 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2009": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.1.0" - } - } - } - ], - "name": "NODE_0000130", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999990780897 - }, - "entropy": 2.2125562682771357e-8, - "value": "Mexico" - }, - "div": 0.21861445588190184, - "num_date": { - "confidence": [ - 2009.705287923348, - 2009.7191780821918 - ], - "value": 2009.7190990329207 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741674 - }, - "entropy": 6.637586551627929e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2009": 0.999999194432084 - }, - "entropy": 0.000014909737298321032, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.1.0" - } - } - } - ], - "name": "NODE_0000086", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999990752881 - }, - "entropy": 2.2189324708094125e-8, - "value": "Mexico" - }, - "div": 0.21861445588190184, - "num_date": { - "confidence": [ - 2009.6893030870583, - 2009.7180957400178 - ], - "value": 2009.7120759826007 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741173 - }, - "entropy": 6.650003572092023e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2009": 0.9999946531392128 - }, - "entropy": 0.00007718260521155418, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.1" - } - } - } - ], - "name": "NODE_0000085", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999945161505 - }, - "entropy": 1.2191636431691157e-7, - "value": "Mexico" - }, - "div": 0.21861445588190184, - "num_date": { - "confidence": [ - 2009.654428713855, - 2009.7168556802926 - ], - "value": 2009.6977368895245 - }, - "region": { - "confidence": { - "LA,C": 0.9999999998476792 - }, - "entropy": 3.6575190697717575e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2009": 0.9990836519769202 - }, - "entropy": 0.008253127638537264, - "value": "2009" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.1" - }, - "GRI Lineage Level 3": { - "value": "B.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.1" - } - } - } - ], - "name": "NODE_0000143", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999698291919 - }, - "entropy": 6.189341557525127e-7, - "value": "Mexico" - }, - "div": 0.21861445588190184, - "num_date": { - "confidence": [ - 2008.4691669021774, - 2008.5309547492766 - ], - "value": 2008.518501548787 - }, - "region": { - "confidence": { - "LA,C": 0.9999999992307226 - }, - "entropy": 1.7234741855169303e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "2008": 0.9881484472967716, - "2009": 0.009583205388574486 - }, - "entropy": 0.07858763240821975, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - } - ], - "name": "NODE_0000080", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999935620840452 - }, - "entropy": 0.00009827979261603007, - "value": "Mexico" - }, - "div": 0.21612890588190184, - "num_date": { - "confidence": [ - 2007.3209938485138, - 2007.7578487972228 - ], - "value": 2007.56801401989 - }, - "region": { - "confidence": { - "LA,C": 0.9999998875807944 - }, - "entropy": 0.0000019598037918556775, - "value": "LA,C" - }, - "year": { - "confidence": { - "2008": 0.9829699358874453, - "2009": 0.0049458169203675986 - }, - "entropy": 0.1421754030171638, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: K351R" - }, - "mutations": { - "nsP2": [ - "K351R" - ], - "nuc": [ - "A2701G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: V39L, V52A; E1: Y373F; nsP2: F599L", - "GRI Lineage Root": "B.0.3" - }, - "mutations": { - "6k": [ - "V39L", - "V52A" - ], - "E1": [ - "Y373F" - ], - "nsP2": [ - "F599L" - ], - "nuc": [ - "G16C", - "A25T", - "C29T", - "A31C", - "T32A", - "A44C", - "A95T", - "A98G", - "C107T", - "C110T", - "G113A", - "G143A", - "C149T", - "C161T", - "A230C", - "T248C", - "T263C", - "C266A", - "A275G", - "C281T", - "T311C", - "C606T", - "C638T", - "C671T", - "A674T", - "T678C", - "C798A", - "A800G", - "T804C", - "G812A", - "C815T", - "G827A", - "C830T", - "T833G", - "T836C", - "C840T", - "T848C", - "G854A", - "T863A", - "C902T", - "A926T", - "T929C", - "C986T", - "G992A", - "G995A", - "G1004A", - "C1022T", - "C1028T", - "G1040C", - "C1043T", - "G1049A", - "G1058A", - "A1073C", - "T1079A", - "G1112A", - "A1139C", - "A1142C", - "T1154C", - "T1160A", - "T1172C", - "A1178C", - "T1190C", - "C1191T", - "T1194C", - "A1235G", - "C1238T", - "A1241G", - "T2291C", - "G2297A", - "C3446A", - "C3677T", - "C4460T", - "A6236C", - "G6251A", - "G6269A", - "G6287A", - "C7193T", - "C7230T", - "T7475C", - "C8158T", - "C8374T", - "C9637T", - "A9943G", - "G9947T", - "T9987C", - "A9988C", - "T10960C", - "G10966T", - "A11098G", - "A11118T", - "T11119C", - "G11134T", - "G11149T", - "C11161T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: F232Y; nsP2: D656E; nsP3: S335P, G451R, L455M; nsP4: S596R, A601T, S604T" - }, - "mutations": { - "nsP1": [ - "F232Y" - ], - "nsP2": [ - "D656E" - ], - "nsP3": [ - "S335P", - "G451R", - "L455M" - ], - "nsP4": [ - "S596R", - "A601T", - "S604T" - ], - "nuc": [ - "C644T", - "C725T", - "T739A", - "T1007C", - "C1040T", - "T1151C", - "T1217C", - "T1802C", - "G3452T", - "T3476C", - "C3479A", - "T3617G", - "T3620A", - "C3623A", - "C3626T", - "C4628T", - "T4833C", - "T5034C", - "G5381A", - "G5382A", - "C5394A", - "T5399C", - "C5870T", - "C6204T", - "C6215T", - "A6218G", - "A6296C", - "G6299A", - "G6854A", - "T7490G", - "T7493C", - "G7496A", - "G7503A", - "T7508A", - "T7512A", - "C7514T", - "C7540T", - "G7544A", - "C8026A", - "C8032T", - "C8092T", - "A8095T", - "C8098T", - "T8260C", - "T8407C", - "T8408C", - "A8734C", - "C8743T", - "C8758G", - "T8776C", - "T8782C", - "A8785T", - "A8947G", - "G9937A", - "C9938T", - "G10963A" - ] - } - }, - "name": "KC344529.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Ecuador": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Ecuador" - }, - "div": 0.23064498588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1976.0013661202186, - 1976.3641841129054 - ], - "value": 1976.0013661202186 - }, - "place_of_collection": { - "value": "Ecuador" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1976": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1976" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.3" - }, - "GRI Lineage Level 3": { - "value": "B.0.3" - }, - "GRI Lineage Level 4": { - "value": "B.0.3" - }, - "GRI Lineage Level 5": { - "value": "B.0.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: D11E, E56D, F94Y; nsP3: S337N, T360A, G362A", - "GRI Lineage Root": "B.0.3.0" - }, - "mutations": { - "nsP1": [ - "D11E", - "E56D", - "F94Y" - ], - "nsP3": [ - "S337N", - "T360A", - "G362A" - ], - "nuc": [ - "C77A", - "T180C", - "A185T", - "A188G", - "T192C", - "G200A", - "A212C", - "T325A", - "T533C", - "T536C", - "C542T", - "G551A", - "T554C", - "T584A", - "C587A", - "C590A", - "T599C", - "G602A", - "G608A", - "G680A", - "T692C", - "C782A", - "A1088C", - "A1100C", - "G1109A", - "A2555G", - "C2558A", - "T2576C", - "T2579C", - "A2594T", - "G5039A", - "G5041A", - "A5109G", - "G5116C", - "T9952C", - "T9958G", - "T10000C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: S272C; E1: V430I, K440R; E3: T5A, M6V, V12I; nsP1: F232Y, V239I; nsP2: L599F, T778S; nsP3: S366P; nsP4: S596R, A601T, S604T" - }, - "mutations": { - "CP": [ - "S272C" - ], - "E1": [ - "V430I", - "K440R" - ], - "E3": [ - "T5A", - "M6V", - "V12I" - ], - "nsP1": [ - "F232Y", - "V239I" - ], - "nsP2": [ - "L599F", - "T778S" - ], - "nsP3": [ - "S366P" - ], - "nsP4": [ - "S596R", - "A601T", - "S604T" - ], - "nuc": [ - "A33T", - "T146C", - "A191G", - "T242C", - "C311T", - "T515C", - "A518G", - "T530C", - "A575C", - "T593C", - "A614T", - "A617C", - "T620C", - "C644T", - "C686T", - "G695T", - "G701A", - "A707G", - "G716C", - "C725T", - "T728C", - "A731G", - "G734A", - "T739A", - "T741C", - "A749C", - "C752A", - "G759A", - "T770A", - "A773C", - "A776T", - "T1007C", - "C1088T", - "T1091C", - "T1151C", - "T1217C", - "T1928C", - "C2291T", - "A2297G", - "C2537T", - "T2540C", - "A2546C", - "A2918G", - "A3137G", - "A3446C", - "C3494T", - "C3500T", - "C3503T", - "C3857T", - "A3981T", - "T4244G", - "T4625C", - "C4628T", - "T4833C", - "T5127C", - "C5147T", - "C5870T", - "T6170C", - "C6215T", - "A6218G", - "A6251G", - "A6269C", - "A6341G", - "T6869C", - "T6953C", - "A6956G", - "T6959G", - "A6974T", - "T7193C", - "C7475T", - "T7490G", - "T7493C", - "G7496A", - "G7503A", - "T7508A", - "T7512A", - "C7514T", - "C7540T", - "G7544A", - "C8098T", - "T8158C", - "G8371A", - "A8375T", - "G8383A", - "C8389A", - "G8392A", - "C8398T", - "A8399G", - "A8402G", - "G8404A", - "T8407C", - "T8408C", - "T8413C", - "G8420A", - "G8431T", - "C8509T", - "A8734C", - "C8758G", - "T8782C", - "A8947G", - "A9544G", - "G9937A", - "C9938T", - "G10963A", - "T10984C", - "G11098A", - "C11119T", - "T11134G", - "T11236A", - "G11278A", - "T11279C", - "A11281G", - "T11287C", - "G11288A", - "T11290A", - "A11319G", - "C11323T" - ] - } - }, - "name": "KC344531.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Ecuador": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Ecuador" - }, - "div": 0.24016896588190187, - "host": { - "value": "Culex (Melanoconion) sp." - }, - "num_date": { - "confidence": [ - 1975.0013698630137, - 1975.599474705684 - ], - "value": 1975.0013698630137 - }, - "place_of_collection": { - "value": "Ecuador" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1975": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1975" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.3" - }, - "GRI Lineage Level 3": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.3.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: S325A; nsP3: A331V, D399E, H401Y, H402R, S408N" - }, - "mutations": { - "E1": [ - "S325A" - ], - "nsP3": [ - "A331V", - "D399E", - "H401Y", - "H402R", - "S408N" - ], - "nuc": [ - "C28T", - "A320G", - "G344T", - "C578T", - "C791T", - "C953T", - "C1037T", - "C1052T", - "T1116C", - "C1175T", - "C1178T", - "A1196G", - "C1199A", - "A1260C", - "A1265C", - "T1274C", - "G1277A", - "C1281A", - "C1283A", - "G1289A", - "A1292C", - "G2600A", - "C2726T", - "C3410T", - "T3987C", - "T5018C", - "C5023T", - "T5228A", - "A5231G", - "C5232T", - "C5234T", - "A5236G", - "G5254A", - "C5255T", - "T5984G", - "G7175A", - "C8000T", - "C8356T", - "T8390C", - "C10204T", - "T10717G", - "T10948C", - "T10973G" - ] - } - }, - "name": "KC344530.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23783749588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1969.101095890411, - 1969.9986301369863 - ], - "value": 1969.9986301369863 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "1969": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.3" - }, - "GRI Lineage Level 3": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.3.0" - } - } - } - ], - "name": "NODE_0000149", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.31799630555334846, - "Ecuador": 0.6238796944362363, - "Mexico": 0.057403622334204304 - }, - "entropy": 0.8295201582742722, - "value": "Ecuador" - }, - "div": 0.23182515588190186, - "num_date": { - "confidence": [ - 1969.6680723577738, - 1969.8830412022735 - ], - "value": 1969.857219516549 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993177917 - }, - "entropy": 1.5367541991065995e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.008417713983134949, - "1969": 0.8928425350431751, - "1975": 0.010644059797817858, - "1976": 0.0060596250101857775 - }, - "entropy": 0.7338948641090463, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.3" - }, - "GRI Lineage Level 3": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.3.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.3.0" - } - } - } - ], - "name": "NODE_0000148", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.23959711378677798, - "Ecuador": 0.6290282717276718, - "Mexico": 0.13011757789846218 - }, - "entropy": 0.9104936004616461, - "value": "Ecuador" - }, - "div": 0.22803097588190185, - "num_date": { - "confidence": [ - 1969.5377387086826, - 1969.7837578919646 - ], - "value": 1969.743914617329 - }, - "region": { - "confidence": { - "LA,C": 0.9999999977645805 - }, - "entropy": 4.770867104974451e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.017350985775541717, - "1969": 0.797442725947296, - "1975": 0.011989492009589679, - "1976": 0.012520046317203683 - }, - "entropy": 1.2561216632021874, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.3" - }, - "GRI Lineage Level 3": { - "value": "B.0.3" - }, - "GRI Lineage Level 4": { - "value": "B.0.3" - }, - "GRI Lineage Level 5": { - "value": "B.0.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S335P, E354A, S355L; nsP4: K93R", - "GRI Lineage Root": "B.0.0" - }, - "mutations": { - "nsP3": [ - "S335P", - "E354A", - "S355L" - ], - "nsP4": [ - "K93R" - ], - "nuc": [ - "C65T", - "T611C", - "T2453C", - "T2552C", - "C3230T", - "C3677T", - "T4043C", - "C4460T", - "T4833C", - "C4979T", - "T5034C", - "A5092C", - "C5095T", - "A5207G", - "A5980G", - "T6170C", - "C6227T", - "T6254C", - "A6266C", - "G6854A", - "C7230T", - "T7475C", - "C8000T", - "T10936C", - "T11326C", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C149T", - "T371C", - "C1367T", - "A1568G", - "C3458T", - "T4019C", - "C5642T", - "A5753G", - "T6518C", - "C6722T", - "G7762A", - "C8458T", - "G9793A", - "T11423C" - ] - } - }, - "name": "KC344450.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21833694588190183, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2008.5204918032787, - 2008.5204918032787 - ], - "value": 2008.5204918032787 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2008": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2008" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: N444S; nsP3: P296L" - }, - "mutations": { - "nsP1": [ - "N444S" - ], - "nsP3": [ - "P296L" - ], - "nuc": [ - "A31T", - "C506T", - "A617G", - "T657C", - "A1375G", - "T2103C", - "T2624C", - "T3230C", - "G3920A", - "C4170T", - "C4918T", - "A5201G", - "A6068G", - "A7154G", - "T9112C", - "G10705A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A8182G", - "C8356T", - "T8896C" - ] - } - }, - "name": "KC344499.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21856342588190183, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T8722C", - "A8737G", - "A8902G" - ] - }, - "labels": { - "GRI Lineage Root": "B.0.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A10426G" - ] - } - }, - "name": "KC344500.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21865276588190186, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344470.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21856609588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.5821917808219, - 2010.664383561644 - ], - "value": 2010.6492948423281 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344501.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21856643588190186, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C8026T" - ] - } - }, - "name": "KC344491.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21865277588190185, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.6561643835616, - 2010.6561643835616 - ], - "value": 2010.6561643835616 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.0" - } - } - } - ], - "name": "NODE_0000153", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999999999997 - }, - "entropy": -9.923742216016877e-13, - "value": "Mexico" - }, - "div": 0.21856408588190185, - "num_date": { - "confidence": [ - 2010.6208751637648, - 2010.6514428273101 - ], - "value": 2010.6479232306765 - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.0000096801515677e-12, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9999999999774987 - }, - "entropy": 5.947107218493144e-10, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.0" - } - } - } - ], - "name": "NODE_0000152", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999897308494 - }, - "entropy": 2.2190611584771983e-7, - "value": "Mexico" - }, - "div": 0.21829775588190184, - "num_date": { - "confidence": [ - 2010.470354387961, - 2010.600817851393 - ], - "value": 2010.55665001587 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997171946 - }, - "entropy": 6.61831205580004e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9997812871122187 - }, - "entropy": 0.00253810053595152, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - } - ], - "name": "NODE_0000151", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999738172748 - }, - "entropy": 5.394741933346814e-7, - "value": "Mexico" - }, - "div": 0.21696812588190184, - "num_date": { - "confidence": [ - 2008.2922166516214, - 2008.4237745196895 - ], - "value": 2008.3654511560449 - }, - "region": { - "confidence": { - "LA,C": 0.9999999995856949 - }, - "entropy": 9.528770447575124e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2008": 0.4167805145680621, - "2009": 0.0016535502821338037, - "2010": 0.5643798488730573 - }, - "entropy": 0.833185390561467, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A31C", - "T1430C", - "C2954A", - "C4043T", - "T4979C", - "T7229C", - "A8182G", - "C8356T", - "A9544G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: G451R, I465K, V476A, A517S; nsP4: R93K, R118K" - }, - "mutations": { - "nsP3": [ - "G451R", - "I465K", - "V476A", - "A517S" - ], - "nsP4": [ - "R93K", - "R118K" - ], - "nuc": [ - "C1964T", - "C2549T", - "G5381A", - "G5382A", - "T5399C", - "T5425A", - "T5426A", - "T5441C", - "T5458C", - "G5471A", - "C5474T", - "G5580T", - "C5585T", - "C5603T", - "G5624A", - "A5702G", - "C5720T", - "C5735T", - "G5765A", - "C5792T", - "T5810C", - "T5831C", - "G5840A", - "C5870T", - "C5900A", - "T5963C", - "T5978C", - "G5980A", - "T5984G", - "T6011A", - "T6035C", - "G6055A", - "C6065T", - "C6074T", - "T6077C", - "A6131G", - "C6170T", - "A8548G", - "C8614T", - "C11036T", - "C11083T" - ] - } - }, - "name": "KC344493.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.22106658588190187, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6479452054793, - 2010.6479452054793 - ], - "value": 2010.6479452054793 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: S176G; nsP3: Q392H; nsP4: A113S" - }, - "mutations": { - "E2": [ - "S176G" - ], - "nsP3": [ - "Q392H" - ], - "nsP4": [ - "A113S" - ], - "nuc": [ - "C3026T", - "T3053C", - "T3230C", - "G5207T", - "A5954G", - "G6039T", - "G6101A", - "G6176A", - "C7172T", - "T8896C", - "A9089G", - "T11357C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T11423C" - ] - } - }, - "name": "KC344469.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Gorchakov,R., Leal,G., Adams,A.P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21843397588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.5821917808219, - 2010.664383561644 - ], - "value": 2010.6282492621126 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "B.0.0.1" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344496.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.650684931507, - 2010.650684931507 - ], - "value": 2010.650684931507 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344497.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Mexico" - }, - "div": 0.21834657588190187, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "B.0.0.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344492.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2010.6561643835616, - 2010.6561643835616 - ], - "value": 2010.6561643835616 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344498.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Estrada-Franco,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Mexico": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "host": { - "value": "mosquito pool" - }, - "num_date": { - "confidence": [ - 2010.6534246575343, - 2010.6534246575343 - ], - "value": 2010.6534246575343 - }, - "place_of_collection": { - "value": "Mexico" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IE" - }, - "year": { - "confidence": { - "2010": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1.0" - } - } - } - ], - "name": "NODE_0000142", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999990780909 - }, - "entropy": 2.212553356800712e-8, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "num_date": { - "confidence": [ - 2010.6437908823948, - 2010.6534246575343 - ], - "value": 2010.6506058822358 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741676 - }, - "entropy": 6.637582133124283e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9999992459118734 - }, - "entropy": 0.00001411054659152988, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1.0" - } - } - } - ], - "name": "NODE_0000140", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999990776186 - }, - "entropy": 2.213628681496603e-8, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "num_date": { - "confidence": [ - 2010.6312074941798, - 2010.651824660274 - ], - "value": 2010.648520247159 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741589 - }, - "entropy": 6.639692368843271e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9999992434228329 - }, - "entropy": 0.000014153941146992272, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1" - } - } - } - ], - "name": "NODE_0000139", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.999999999076129 - }, - "entropy": 2.217017967569959e-8, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "num_date": { - "confidence": [ - 2010.6080877168217, - 2010.650684931507 - ], - "value": 2010.642363493533 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741321 - }, - "entropy": 6.646287058252274e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.999999207039126 - }, - "entropy": 0.000014761124199952914, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "B.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "B.0.0.1" - } - } - } - ], - "name": "NODE_0000157", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999999961646938 - }, - "entropy": 8.662565289458364e-8, - "value": "Mexico" - }, - "div": 0.21834557588190187, - "num_date": { - "confidence": [ - 2010.506041857475, - 2010.6491409672337 - ], - "value": 2010.5820524204917 - }, - "region": { - "confidence": { - "LA,C": 0.9999999998932875 - }, - "entropy": 2.5994441835703575e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2010": 0.9999897359273485 - }, - "entropy": 0.00015542895404525224, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - } - ], - "name": "NODE_0000156", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999998703746776 - }, - "entropy": 0.0000024725523048743405, - "value": "Mexico" - }, - "div": 0.21734801588190186, - "num_date": { - "confidence": [ - 2009.5656696751787, - 2009.9401956358365 - ], - "value": 2009.7578996138673 - }, - "region": { - "confidence": { - "LA,C": 0.9999999965188557 - }, - "entropy": 7.275980138804333e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "2008": 0.004126396556826417, - "2010": 0.9937434379290114 - }, - "entropy": 0.05000346493312126, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - } - ], - "name": "NODE_0000150", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999970227933055 - }, - "entropy": 0.00004762631543488907, - "value": "Mexico" - }, - "div": 0.21676630588190185, - "num_date": { - "confidence": [ - 2008.2027342339259, - 2008.3905026623945 - ], - "value": 2008.2997342858102 - }, - "region": { - "confidence": { - "LA,C": 0.9999999634196421 - }, - "entropy": 6.78763415905463e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1969": 0.0017374519309956591, - "2008": 0.3537003838391207, - "2009": 0.0031128725149359923, - "2010": 0.6039917939546123 - }, - "entropy": 0.9658265792778339, - "value": "2010" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0.0" - }, - "GRI Lineage Level 3": { - "value": "B.0.0" - }, - "GRI Lineage Level 4": { - "value": "B.0.0" - }, - "GRI Lineage Level 5": { - "value": "B.0.0" - } - } - } - ], - "name": "NODE_0000147", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.012768866835803057, - "Ecuador": 0.03574816432262148, - "Mexico": 0.9506148492723793 - }, - "entropy": 0.23053678840378775, - "value": "Mexico" - }, - "div": 0.21661387588190184, - "num_date": { - "confidence": [ - 1969.0507916383733, - 1969.3345512800595 - ], - "value": 1969.208038934751 - }, - "region": { - "confidence": { - "LA,C": 0.9999999856064751 - }, - "entropy": 2.804189617566792e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.015745398464465023, - "1967": 0.04282584546808807, - "1969": 0.5887814947091095, - "1976": 0.015167263969719456 - }, - "entropy": 2.210702856054782, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - } - ], - "name": "NODE_0000141", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.0024079964061151744, - "Ecuador": 0.007148096870096242, - "Mexico": 0.9897978540196256 - }, - "entropy": 0.06524183611340129, - "value": "Mexico" - }, - "div": 0.21612890588190184, - "num_date": { - "confidence": [ - 1969.0151160724463, - 1969.271472808499 - ], - "value": 1969.1577159806 - }, - "region": { - "confidence": { - "LA,C": 0.9999999934845221 - }, - "entropy": 1.3198406754675585e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.019252443357140523, - "1967": 0.052864901674799424, - "1969": 0.5257767438502797, - "1976": 0.01578041665994767 - }, - "entropy": 2.455785133424669, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - } - ], - "name": "NODE_0000135", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.001137876245571191, - "Ecuador": 0.003459008666705984, - "Mexico": 0.994667500103125 - }, - "entropy": 0.038296879821586034, - "value": "Mexico" - }, - "div": 0.21506581588190185, - "num_date": { - "confidence": [ - 1968.871607547879, - 1969.16159123594 - ], - "value": 1968.9869414234608 - }, - "region": { - "confidence": { - "LA,C": 0.999999988929501 - }, - "entropy": 2.1813435503649227e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.02284907478328862, - "1967": 0.06340336970350145, - "1968": 0.016488280731780738, - "1969": 0.4694698664817801 - }, - "entropy": 2.6577722865006765, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B.0" - }, - "GRI Lineage Level 2": { - "value": "B.0" - }, - "GRI Lineage Level 3": { - "value": "B.0" - }, - "GRI Lineage Level 4": { - "value": "B.0" - }, - "GRI Lineage Level 5": { - "value": "B.0" - } - } - } - ], - "name": "NODE_0000134", - "node_attrs": { - "country": { - "confidence": { - "Ecuador": 0.002910763817913837, - "Mexico": 0.9951475979803416 - }, - "entropy": 0.03573431118399609, - "value": "Mexico" - }, - "div": 0.21481596588190185, - "num_date": { - "confidence": [ - 1968.843585769326, - 1969.1198168102276 - ], - "value": 1968.9666736674328 - }, - "region": { - "confidence": { - "LA,C": 0.9999999091352234 - }, - "entropy": 0.0000016029701590667883, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.02657607122420602, - "1967": 0.07458143841716175, - "1968": 0.017961291118707506, - "1969": 0.41911026452258643 - }, - "entropy": 2.8234764624300768, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - } - ], - "name": "NODE_0000133", - "node_attrs": { - "country": { - "confidence": { - "Belize": 0.017278799036222856, - "Mexico": 0.981766388591396 - }, - "entropy": 0.096289385895311, - "value": "Mexico" - }, - "div": 0.20728567588190186, - "num_date": { - "confidence": [ - 1965.3479134870463, - 1965.9980038840959 - ], - "value": 1965.7082855716064 - }, - "region": { - "confidence": { - "LA,C": 0.9999999687765324 - }, - "entropy": 5.841572910291818e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.15189149641174485, - "1967": 0.5316018612449214, - "1968": 0.014897235116814926, - "1969": 0.03990761298558748 - }, - "entropy": 2.152473779696706, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - } - ], - "name": "NODE_0000126", - "node_attrs": { - "country": { - "confidence": { - "Mexico": 0.9999426941340266 - }, - "entropy": 0.0006632782345389808, - "value": "Mexico" - }, - "div": 0.20696536588190187, - "num_date": { - "confidence": [ - 1963.3633425279415, - 1963.4619611988417 - ], - "value": 1963.4193753904497 - }, - "region": { - "confidence": { - "LA,C": 0.9999999989069569 - }, - "entropy": 2.4109963403377197e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.7597335934618381, - "1967": 0.17495256215989283, - "1968": 0.005185568625218611, - "1969": 0.0033451130886555627 - }, - "entropy": 0.9367184058981766, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - } - ], - "name": "NODE_0000125", - "node_attrs": { - "country": { - "confidence": { - "Guatemala": 0.005001926876928662, - "Mexico": 0.9946550907880812 - }, - "entropy": 0.0349059813440002, - "value": "Mexico" - }, - "div": 0.19810603588190187, - "num_date": { - "confidence": [ - 1962.529802397054, - 1962.81160518291 - ], - "value": 1962.6851893143028 - }, - "region": { - "confidence": { - "LA,C": 0.9999999950121353 - }, - "entropy": 1.0244911037116277e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.47042968496708737, - "1967": 0.2778883613370869, - "1968": 0.02067954548131166, - "1969": 0.008282797773926114 - }, - "entropy": 2.0056714386579046, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - } - ], - "name": "NODE_0000096", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.0010039085102563489, - "Guatemala": 0.20825033966500198, - "Mexico": 0.7716746879217425, - "Panama": 0.016241714999490547 - }, - "entropy": 0.623543600457926, - "value": "Mexico" - }, - "div": 0.19423401588190187, - "num_date": { - "confidence": [ - 1962.0495449420391, - 1962.4575589501503 - ], - "value": 1962.214305210564 - }, - "region": { - "confidence": { - "LA,C": 0.9999999843720682 - }, - "entropy": 3.0301980084117745e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1963": 0.3624599346010334, - "1967": 0.27429437491288167, - "1968": 0.03202579853469719, - "1969": 0.010912124647397353 - }, - "entropy": 2.4562920996209723, - "value": "1963" - }, - "GRI Lineage Level 0": { - "value": "B" - }, - "GRI Lineage Level 1": { - "value": "B" - }, - "GRI Lineage Level 2": { - "value": "B" - }, - "GRI Lineage Level 3": { - "value": "B" - }, - "GRI Lineage Level 4": { - "value": "B" - }, - "GRI Lineage Level 5": { - "value": "B" - } - } - } - ], - "name": "NODE_0000094", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.01472524750140437, - "Guatemala": 0.0902079424313396, - "Mexico": 0.32462172078741464, - "Panama": 0.5319318785214361 - }, - "entropy": 1.1928782997558895, - "value": "Panama" - }, - "div": 0.16288492588190187, - "num_date": { - "confidence": [ - 1955.3756793123353, - 1956.5295953082555 - ], - "value": 1956.083311360622 - }, - "region": { - "confidence": { - "LA,C": 0.9999902631067242 - }, - "entropy": 0.00012619157745360232, - "value": "LA,C" - }, - "year": { - "confidence": { - "1961": 0.03989378942539785, - "1962": 0.04044334342935708, - "1963": 0.03125134093365544, - "1967": 0.025562913860332857 - }, - "entropy": 3.8523385700947266, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: Y4F, A42T, K66P, E74Q, N75K, Q78G, N79Q, K91A, H97N, E100A, A108T, D133E, S183N; E1: P14S, I47V, T65S, S69T, Q120E, T142I, T143V, I145T, H196Q, A197P, A205S, I208V, P248A; E2: I93V, P150A, T177S, L179V, M181L, H187P, V196A, T223K, D224E, S247A, D249A, E263D, A264G, D301A, G302D, Q336K, I380V; E3: S17A, V50A, L51V, K58R; nsP1: E56D, K85R, A98T, I133M, K425R, V431I, S458N, L471M, N492C, K501R; nsP2: R34K, K138R, K351Q, D441N, L493M, K505E, T612L, T615N, H619Q, A624S, M641L, T642S, E653D, L671V, V679I, V750S; nsP3: R102K, A115S, M122T, V155A, E169D, M218I, I227V, L237M, H312Q, E322A, A331V, E351G, T356P, A359V, M384L, E387D, H394L, F407S, V426I, I435M, K438E, K450R, L452M, V471H, K473A, S524T; nsP4: Q58P, T77A, A108S, V127M, Y240F, P397A, N456G, F562L, I582V, E593K" - }, - "mutations": { - "CP": [ - "Y4F", - "A42T", - "K66P", - "E74Q", - "N75K", - "Q78G", - "N79Q", - "K91A", - "H97N", - "E100A", - "A108T", - "D133E", - "S183N" - ], - "E1": [ - "P14S", - "I47V", - "T65S", - "S69T", - "Q120E", - "T142I", - "T143V", - "I145T", - "H196Q", - "A197P", - "A205S", - "I208V", - "P248A" - ], - "E2": [ - "I93V", - "P150A", - "T177S", - "L179V", - "M181L", - "H187P", - "V196A", - "T223K", - "D224E", - "S247A", - "D249A", - "E263D", - "A264G", - "D301A", - "G302D", - "Q336K", - "I380V" - ], - "E3": [ - "S17A", - "V50A", - "L51V", - "K58R" - ], - "nsP1": [ - "E56D", - "K85R", - "A98T", - "I133M", - "K425R", - "V431I", - "S458N", - "L471M", - "N492C", - "K501R" - ], - "nsP2": [ - "R34K", - "K138R", - "K351Q", - "D441N", - "L493M", - "K505E", - "T612L", - "T615N", - "H619Q", - "A624S", - "M641L", - "T642S", - "E653D", - "L671V", - "V679I", - "V750S" - ], - "nsP3": [ - "R102K", - "A115S", - "M122T", - "V155A", - "E169D", - "M218I", - "I227V", - "L237M", - "H312Q", - "E322A", - "A331V", - "E351G", - "T356P", - "A359V", - "M384L", - "E387D", - "H394L", - "F407S", - "V426I", - "I435M", - "K438E", - "K450R", - "L452M", - "V471H", - "K473A", - "S524T" - ], - "nsP4": [ - "Q58P", - "T77A", - "A108S", - "V127M", - "Y240F", - "P397A", - "N456G", - "F562L", - "I582V", - "E593K" - ], - "nuc": [ - "A33T", - "A212C", - "T221C", - "A230T", - "A298G", - "G336A", - "C365A", - "A368T", - "G389A", - "A404C", - "T443G", - "T473C", - "T530C", - "C626A", - "C725T", - "G773T", - "T779G", - "C935T", - "G944T", - "C959T", - "C1005T", - "T1007G", - "C1061T", - "G1148C", - "T1169C", - "A1193T", - "A1196G", - "C1220T", - "A1232G", - "A1259G", - "A1262G", - "G1268A", - "A1275C", - "C1281A", - "G1289A", - "A1292C", - "A1318G", - "G1335A", - "G1337T", - "T1391A", - "A1406G", - "G1417A", - "T1455A", - "A1475G", - "A1478G", - "G1487C", - "A1499G", - "A1518T", - "A1519G", - "A1545C", - "A1546G", - "G1547T", - "G1550A", - "T1572C", - "T1586A", - "A1601G", - "G1634A", - "A1649C", - "C1655A", - "A1658G", - "G1670T", - "G1673C", - "C1679A", - "C1685T", - "C1718T", - "A1739G", - "C1749A", - "G1750A", - "A1778T", - "G1787A", - "C1796A", - "C1802A", - "A1815C", - "G1838A", - "G1871A", - "A1901T", - "C1904G", - "G1910A", - "G2003A", - "G2015T", - "A2030G", - "T2033C", - "A2062G", - "G2105T", - "G2144C", - "C2153T", - "A2174T", - "G2285A", - "C2343A", - "G2363C", - "A2384C", - "C2399T", - "A2417T", - "T2442C", - "G2444C", - "G2465A", - "C2504T", - "T2540C", - "A2543G", - "A2580C", - "G2609C", - "C2612A", - "C2616T", - "C2642G", - "C2645G", - "A2669G", - "A2700C", - "C2745T", - "T2768C", - "A2798G", - "G2807T", - "C2816G", - "A2826C", - "G2843A", - "T2879C", - "G2906T", - "T2921A", - "A2927C", - "C2948A", - "A2969G", - "G2970A", - "A2990G", - "A3068G", - "C3116A", - "T3126A", - "A3134T", - "A3162G", - "G3173A", - "C3213A", - "A3227C", - "T3231C", - "A3239C", - "C3293T", - "A3305G", - "C3326T", - "G3341T", - "G3380T", - "A3467G", - "A3483C", - "C3484T", - "C3493A", - "T3506G", - "G3519T", - "A3570T", - "A3573T", - "G3587A", - "C3605A", - "A3608C", - "C3660G", - "G3684A", - "A3698T", - "C3779T", - "A3782G", - "C3815T", - "A3854T", - "G3884A", - "G3897T", - "T3898C", - "G3905T", - "C3959G", - "C3980A", - "C4061T", - "T4070G", - "G4076C", - "C4091A", - "A4118T", - "T4139G", - "A4178G", - "A4235C", - "G4259T", - "A4262G", - "G4268T", - "C4284T", - "G4295T", - "T4322C", - "G4336A", - "G4343A", - "C4356T", - "G4374T", - "T4396C", - "G4397C", - "A4406G", - "G4448A", - "A4463G", - "T4495C", - "A4538C", - "C4547G", - "T4574G", - "C4592T", - "A4610G", - "C4647T", - "G4676C", - "G4685A", - "C4697T", - "A4710G", - "T4724C", - "T4740A", - "G4751C", - "T4778A", - "C4860A", - "C4931T", - "A4958G", - "C4967G", - "T4982A", - "A4996C", - "T5009A", - "C5023T", - "A5083G", - "A5097C", - "C5107T", - "A5114G", - "A5135G", - "A5168G", - "C5171T", - "A5181T", - "A5192C", - "G5201C", - "A5207G", - "A5212T", - "C5213G", - "G5219C", - "A5231T", - "A5237G", - "T5240G", - "G5246T", - "T5251C", - "A5273T", - "G5307A", - "G5309C", - "A5336G", - "A5343G", - "A5380G", - "T5385A", - "A5400C", - "T5405G", - "A5414G", - "C5423A", - "T5426A", - "A5438T", - "G5442C", - "T5443A", - "G5447C", - "A5448G", - "A5449C", - "A5450T", - "G5453A", - "G5462A", - "G5465A", - "G5510T", - "T5601A", - "G5612C", - "C5642T", - "G5648A", - "C5663G", - "C5669A", - "A5762G", - "T5771C", - "A5861G", - "C5867T", - "A5875C", - "A5876T", - "A5931G", - "A5937C", - "A5939T", - "A5969G", - "T5972A", - "T6000C", - "C6005T", - "G6024T", - "C6035T", - "A6038T", - "G6041T", - "G6080C", - "G6081A", - "C6137T", - "C6143T", - "G6155T", - "A6230T", - "C6245A", - "T6248A", - "G6284C", - "A6293C", - "C6317T", - "T6323C", - "C6342T", - "C6359G", - "A6374G", - "A6421T", - "C6422T", - "A6440G", - "T6441C", - "A6443T", - "T6461A", - "G6488A", - "G6494T", - "G6503T", - "T6515A", - "C6527T", - "C6531T", - "C6545A", - "T6566C", - "A6572G", - "T6656A", - "C6693A", - "A6785G", - "C6824T", - "C6833T", - "G6845C", - "G6857C", - "A6860G", - "C6861T", - "C6891G", - "A6908G", - "T6923C", - "C6941A", - "C6944T", - "A6947G", - "C7004A", - "C7053A", - "G7064A", - "A7068G", - "A7069G", - "C7070A", - "C7139A", - "C7193G", - "C7230T", - "A7256G", - "A7304T", - "C7341A", - "A7343G", - "G7355A", - "T7386C", - "A7446G", - "G7479A", - "C7514T", - "G7539A", - "A7572T", - "T7624C", - "T7627G", - "A7630C", - "A7633G", - "A7636C", - "G7681A", - "G7685A", - "A7757C", - "A7758C", - "G7781C", - "T7786A", - "C7793G", - "A7794G", - "G7795C", - "A7796C", - "T7798A", - "A7832G", - "A7833C", - "G7834T", - "C7850A", - "A7860C", - "C7870A", - "G7883A", - "A7900C", - "C7960A", - "A7966G", - "C8053A", - "G8068A", - "G8086T", - "C8092T", - "G8109A", - "A8119C", - "A8131G", - "C8170T", - "A8198C", - "G8200T", - "T8236C", - "C8242A", - "A8251T", - "C8260T", - "A8263G", - "G8320T", - "C8323A", - "A8344G", - "G8347A", - "C8422G", - "T8435G", - "C8461A", - "T8476C", - "T8535C", - "C8537G", - "G8539T", - "C8551A", - "A8559G", - "G8569C", - "G8605T", - "G8617A", - "C8650T", - "T8653A", - "C8699A", - "C8731T", - "A8740C", - "A8755G", - "C8830G", - "A8840G", - "A8842G", - "C8857T", - "A8878G", - "C8941G", - "G8977C", - "C9011G", - "G9022C", - "C9079A", - "C9093G", - "C9098G", - "A9104T", - "A9123C", - "T9150C", - "C9231A", - "A9232G", - "T9235G", - "G9244A", - "C9250T", - "T9302G", - "A9309C", - "G9328A", - "T9331C", - "A9334C", - "A9352C", - "C9354G", - "T9415A", - "G9463T", - "A9465C", - "G9468A", - "A9472G", - "A9475T", - "C9505A", - "C9569A", - "C9631A", - "A9691C", - "G9697A", - "A9701G", - "C9740A", - "G9769A", - "C9772A", - "G9775T", - "C9782A", - "T9790G", - "G9793T", - "A9802T", - "G9817C", - "A9827C", - "A9847G", - "C9851T", - "G9877A", - "G9940C", - "T9952C", - "C10040T", - "A10081C", - "C10102A", - "T10117A", - "A10139G", - "A10144C", - "C10174A", - "A10193T", - "T10205A", - "A10249G", - "G10252T", - "A10294T", - "G10306A", - "G10309C", - "G10318C", - "C10358G", - "G10360A", - "C10387G", - "C10393G", - "A10423T", - "C10425T", - "A10427G", - "C10428T", - "A10429G", - "A10432C", - "T10434C", - "C10462G", - "T10561C", - "T10588A", - "G10589C", - "G10597A", - "C10609A", - "G10613T", - "A10622G", - "C10627A", - "C10642T", - "C10693G", - "C10738T", - "C10742G", - "A10744T", - "G10774A", - "T10783A", - "G10819A", - "A10822G", - "G10888T", - "T10894G", - "G10909T", - "C11005G", - "G11017A", - "G11038A", - "A11062T", - "T11116A", - "C11179T", - "G11188A", - "T11279C", - "T11296C", - "A11328G", - "A11372G", - "A11380T", - "A11416T", - "C11419G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: I20T, V39M; CP: P6S, D55G, P66S, G80R, Q86E, P98L, A100T, I136V, K218R, K223R; E1: S9N, A59T, T82A, V103I, D112E, A116V, E120A, F132L, I142T, S205L, A343S, A352V, Y373F, I430L, H441R; E2: I20V, S57P, G63S, D69N, H71Y, G183S, S184G, P187S, G203S, K206T, T213K, A214T, D263N, N291Y, Q299E, A315S, T320S, E323A, T357V, L369T, V382I, F389L, K391R, V394A, R407K, A418T, T420S; E3: V36A, E48K, K52T; nsP1: M133V, R256K, T337I, M417L, R424K, T466N, I487V, Q488H, V500A, A508V; nsP2: K121R, T122V, V123I, K143R, T153A, A215T, R328K, D352G, I375V, I446M, A451T, N499S, Y503H, V538I, T647S, K767R, R788G; nsP3: I20V, A62T, V104I, K118R, A155V, A228V, A344V, T349A, G351R, T352E, P353M, L358N, V359R, D362S, A363E, R365S, T368V, I372V, I373N, D380G, L384S, T390I, H391R, A398V, G402R, S407F, G432E, T436I, S441A, A442T, N445D, F448S, M452V, L455M, V465I, N468K, T478I, P479Q, P483L, A486F, S487N, T495G, G498D, I503T, T512V, S520P, V536E; nsP4: R68K, V151I, E238K, V253I, L387M, I580V, T586A" - }, - "mutations": { - "6k": [ - "I20T", - "V39M" - ], - "CP": [ - "P6S", - "D55G", - "P66S", - "G80R", - "Q86E", - "P98L", - "A100T", - "I136V", - "K218R", - "K223R" - ], - "E1": [ - "S9N", - "A59T", - "T82A", - "V103I", - "D112E", - "A116V", - "E120A", - "F132L", - "I142T", - "S205L", - "A343S", - "A352V", - "Y373F", - "I430L", - "H441R" - ], - "E2": [ - "I20V", - "S57P", - "G63S", - "D69N", - "H71Y", - "G183S", - "S184G", - "P187S", - "G203S", - "K206T", - "T213K", - "A214T", - "D263N", - "N291Y", - "Q299E", - "A315S", - "T320S", - "E323A", - "T357V", - "L369T", - "V382I", - "F389L", - "K391R", - "V394A", - "R407K", - "A418T", - "T420S" - ], - "E3": [ - "V36A", - "E48K", - "K52T" - ], - "nsP1": [ - "M133V", - "R256K", - "T337I", - "M417L", - "R424K", - "T466N", - "I487V", - "Q488H", - "V500A", - "A508V" - ], - "nsP2": [ - "K121R", - "T122V", - "V123I", - "K143R", - "T153A", - "A215T", - "R328K", - "D352G", - "I375V", - "I446M", - "A451T", - "N499S", - "Y503H", - "V538I", - "T647S", - "K767R", - "R788G" - ], - "nsP3": [ - "I20V", - "A62T", - "V104I", - "K118R", - "A155V", - "A228V", - "A344V", - "T349A", - "G351R", - "T352E", - "P353M", - "L358N", - "V359R", - "D362S", - "A363E", - "R365S", - "T368V", - "I372V", - "I373N", - "D380G", - "L384S", - "T390I", - "H391R", - "A398V", - "G402R", - "S407F", - "G432E", - "T436I", - "S441A", - "A442T", - "N445D", - "F448S", - "M452V", - "L455M", - "V465I", - "N468K", - "T478I", - "P479Q", - "P483L", - "A486F", - "S487N", - "T495G", - "G498D", - "I503T", - "T512V", - "S520P", - "V536E" - ], - "nsP4": [ - "R68K", - "V151I", - "E238K", - "V253I", - "L387M", - "I580V", - "T586A" - ], - "nuc": [ - "A31C", - "T32C", - "C35A", - "A38G", - "C80T", - "C83T", - "C131T", - "A191G", - "C192T", - "T242C", - "T266A", - "G275A", - "T278C", - "T290C", - "T302C", - "G305A", - "A308G", - "T311C", - "T332C", - "A335T", - "C371T", - "G374A", - "T378C", - "T422G", - "T440C", - "A441G", - "C458T", - "C473T", - "A482G", - "T491A", - "A509G", - "C530T", - "C536T", - "C545T", - "A551G", - "C560T", - "C575T", - "T578C", - "C584T", - "C605T", - "T611A", - "A623T", - "A626G", - "C638T", - "T657C", - "A659C", - "T668A", - "C671T", - "A680G", - "T710C", - "T740C", - "G779A", - "C785T", - "G800A", - "C807T", - "G811A", - "A863G", - "T872C", - "T878A", - "C920T", - "A926T", - "C986T", - "G1034A", - "C1037T", - "G1040A", - "G1046A", - "C1054T", - "G1100A", - "G1109T", - "A1112G", - "C1119T", - "G1136A", - "C1160T", - "A1166G", - "C1169T", - "T1175C", - "C1178A", - "T1190C", - "A1214G", - "T1220C", - "G1241A", - "A1265G", - "A1271T", - "A1293T", - "G1298A", - "T1310C", - "G1315A", - "A1331G", - "C1346T", - "A1349C", - "T1352C", - "C1361T", - "C1364T", - "C1367T", - "C1376T", - "C1379T", - "C1388T", - "C1394T", - "A1409T", - "A1421G", - "C1441A", - "C1442T", - "A1454G", - "C1469T", - "T1490C", - "C1502T", - "A1503G", - "A1508C", - "A1523G", - "T1543C", - "C1544T", - "T1547C", - "C1553A", - "C1565G", - "C1567T", - "A1586G", - "T1589C", - "T1592C", - "C1608T", - "T1626C", - "A1637G", - "T1643C", - "G1646A", - "T1667A", - "G1676A", - "C1688T", - "T1694C", - "C1700A", - "C1706T", - "T1718C", - "C1721T", - "T1733C", - "A1736G", - "T1742C", - "A1745G", - "C1748T", - "G1757A", - "C1761T", - "T1766G", - "T1772C", - "T1778C", - "C1779T", - "C1781G", - "G1799A", - "A1820G", - "T1826C", - "T1829C", - "C1832G", - "C1841G", - "C1844T", - "G1859C", - "G1862A", - "A1877T", - "C1883T", - "C1892T", - "T1913C", - "C1931T", - "C1961T", - "T1964C", - "A1979G", - "A1982G", - "C1986T", - "C1991T", - "T2006C", - "A2011G", - "A2013G", - "C2014T", - "G2016A", - "C2024T", - "C2033T", - "C2036T", - "C2045T", - "C2054T", - "G2063A", - "C2072T", - "A2077G", - "T2105A", - "A2106G", - "A2108C", - "T2126G", - "C2129A", - "C2147T", - "T2153C", - "C2154T", - "A2159G", - "A2162G", - "G2168A", - "C2171T", - "T2177C", - "A2189G", - "A2216G", - "C2222T", - "G2225A", - "C2234T", - "C2243T", - "C2249T", - "A2255G", - "T2261C", - "G2270A", - "A2282G", - "G2292A", - "C2328T", - "G2330A", - "T2348C", - "A2357G", - "C2394T", - "G2396A", - "T2399C", - "T2402C", - "C2405T", - "A2408G", - "T2411A", - "T2417C", - "T2420C", - "T2432C", - "C2444T", - "C2453T", - "A2457C", - "T2462A", - "A2471T", - "G2474A", - "C2480T", - "T2486C", - "A2489G", - "C2501T", - "T2504C", - "C2519T", - "T2531C", - "C2537T", - "G2555A", - "C2558T", - "C2561T", - "T2579C", - "T2600C", - "G2603T", - "C2615T", - "T2616C", - "A2630G", - "G2632A", - "A2633G", - "A2639G", - "G2645A", - "G2651A", - "T2660C", - "T2666C", - "T2672A", - "T2681C", - "T2687C", - "A2704G", - "C2711T", - "T2714C", - "C2717T", - "T2723C", - "C2759T", - "A2772G", - "T2786A", - "T2792C", - "C2799T", - "C2804A", - "T2807C", - "C2849T", - "C2850T", - "A2870G", - "C2879T", - "G2888A", - "T2906C", - "A2921G", - "C2922T", - "C2927T", - "A2936C", - "C2949T", - "C2957T", - "G2960A", - "T2966A", - "G2969T", - "C2975T", - "A2987G", - "G3000A", - "C3017T", - "C3044T", - "C3074T", - "T3080C", - "T3093C", - "C3125T", - "C3131T", - "T3134C", - "A3145G", - "T3149C", - "T3155C", - "T3156C", - "T3158C", - "C3161T", - "C3170T", - "T3176C", - "G3188A", - "A3194G", - "C3204T", - "G3215A", - "T3221C", - "C3231T", - "C3236T", - "A3245T", - "A3254G", - "G3261A", - "T3275C", - "T3281C", - "T3284C", - "T3296C", - "C3311T", - "C3321T", - "A3329G", - "C3338T", - "T3341C", - "G3344A", - "C3347T", - "T3371C", - "A3374T", - "A3377G", - "C3383T", - "T3410C", - "G3419A", - "T3425C", - "T3428C", - "T3431C", - "G3434A", - "T3443C", - "C3444T", - "C3458T", - "C3465T", - "T3477C", - "T3491C", - "C3500T", - "A3503G", - "T3518A", - "C3527T", - "A3545G", - "T3548C", - "G3566A", - "G3569A", - "C3578T", - "A3588T", - "T3593C", - "T3614C", - "T3641C", - "A3644G", - "T3647C", - "A3653T", - "G3662A", - "A3668G", - "C3671T", - "C3677A", - "T3683C", - "T3698C", - "A3701G", - "C3710T", - "T3728C", - "C3737T", - "T3743C", - "G3746A", - "T3756C", - "T3773C", - "T3779C", - "C3791A", - "A3794T", - "C3800T", - "C3803T", - "T3815C", - "T3818C", - "C3821T", - "G3830A", - "A3839G", - "C3845T", - "T3854C", - "C3861A", - "A3902G", - "G3923A", - "G3938A", - "A3949G", - "C3953A", - "T3956C", - "T3968C", - "T3977C", - "T3983G", - "C3986A", - "C3992T", - "C3998T", - "T4001C", - "A4011G", - "C4019T", - "A4028G", - "C4037T", - "A4040G", - "T4046C", - "A4055C", - "T4061C", - "C4088T", - "A4089G", - "A4091G", - "T4100C", - "T4118C", - "A4124C", - "G4127A", - "G4148A", - "C4154T", - "A4160G", - "G4187A", - "A4193G", - "C4200T", - "C4205T", - "T4211C", - "G4215A", - "T4223C", - "C4226T", - "T4229C", - "T4232C", - "C4235T", - "C4247T", - "T4259C", - "G4262T", - "A4265G", - "T4284C", - "A4289G", - "G4292A", - "C4307T", - "T4310A", - "T4325C", - "A4340G", - "G4341A", - "A4343T", - "G4346A", - "T4356C", - "C4361T", - "A4384G", - "C4392T", - "A4394G", - "A4400G", - "T4404C", - "C4409T", - "T4424C", - "C4430T", - "T4445C", - "A4461C", - "T4484C", - "A4493G", - "C4495T", - "A4511G", - "C4535T", - "C4538T", - "C4541T", - "T4544G", - "G4547A", - "A4565G", - "C4569T", - "G4571A", - "G4589A", - "T4592C", - "T4595C", - "T4596C", - "G4598A", - "T4601C", - "A4622C", - "T4625C", - "T4628C", - "C4640T", - "T4646C", - "T4647C", - "C4658A", - "C4667T", - "G4679A", - "T4682C", - "A4688T", - "T4694C", - "C4700T", - "T4709C", - "T4712G", - "C4714T", - "G4721A", - "A4733G", - "A4736C", - "T4745C", - "C4748T", - "C4751T", - "C4769T", - "T4772C", - "C4790T", - "A4802G", - "C4808T", - "C4838T", - "T4847A", - "A4862G", - "A4865G", - "A4874G", - "A4883G", - "T4886C", - "A4889C", - "A4901G", - "A4910G", - "C4913T", - "T4916C", - "A4919G", - "T4920C", - "T4931C", - "C4937T", - "T4943C", - "C4979T", - "G4997A", - "T5003C", - "A5009G", - "C5062T", - "A5076G", - "A5078G", - "G5081A", - "G5082A", - "A5085G", - "C5086A", - "C5088A", - "C5089T", - "T5090G", - "A5096G", - "C5103A", - "T5104A", - "T5105C", - "G5106A", - "T5107G", - "A5108G", - "C5111T", - "G5115A", - "A5116G", - "T5117C", - "C5119A", - "A5120G", - "G5126T", - "A5133G", - "C5134T", - "G5144A", - "A5145G", - "T5149A", - "C5150T", - "G5159A", - "A5165G", - "A5170G", - "T5171C", - "T5174C", - "T5182C", - "G5198T", - "C5200T", - "A5203G", - "C5204G", - "A5216G", - "C5219T", - "C5224T", - "A5225G", - "C5228T", - "T5231C", - "G5235A", - "G5240A", - "T5246C", - "A5249G", - "C5251T", - "C5261T", - "C5282T", - "T5291C", - "C5297T", - "C5318T", - "C5319T", - "G5326A", - "A5327G", - "C5338T", - "C5342T", - "A5348T", - "T5352G", - "A5354C", - "G5355A", - "A5357G", - "A5364G", - "T5374C", - "G5381A", - "C5384T", - "A5385G", - "C5394A", - "T5411A", - "T5417C", - "C5418A", - "A5420G", - "G5424A", - "C5429T", - "C5435A", - "T5438C", - "T5444C", - "C5447T", - "C5464T", - "C5467A", - "C5479T", - "G5487T", - "C5488T", - "C5489T", - "G5491A", - "C5492T", - "T5501C", - "T5510C", - "C5513T", - "A5514G", - "C5515G", - "G5519A", - "G5524A", - "C5525T", - "G5528A", - "T5539C", - "T5540C", - "G5552A", - "C5562T", - "T5564A", - "A5565G", - "C5566T", - "C5576A", - "T5579A", - "T5582A", - "C5585T", - "T5589C", - "A5597G", - "A5600G", - "T5603C", - "C5612T", - "T5615C", - "G5621T", - "A5630G", - "T5638A", - "C5645T", - "G5651A", - "T5657C", - "T5690C", - "C5708A", - "A5741G", - "G5756A", - "G5765A", - "T5766C", - "G5780A", - "A5831G", - "A5834G", - "C5841T", - "C5862T", - "G5864A", - "T5867C", - "T5879C", - "C5888T", - "C5894T", - "G5905A", - "C5924T", - "A5954G", - "T5960C", - "A5978G", - "G5987A", - "T5993C", - "C5999T", - "T6008C", - "T6014C", - "A6023G", - "T6026C", - "T6029C", - "T6041C", - "A6047T", - "C6053T", - "A6068G", - "C6074T", - "C6084T", - "C6095T", - "T6104C", - "T6110C", - "C6116T", - "T6119C", - "G6153A", - "C6158T", - "C6161T", - "T6167C", - "T6174C", - "A6176G", - "T6182A", - "C6185A", - "C6204T", - "C6209T", - "C6212T", - "A6224G", - "T6233C", - "G6260A", - "A6263G", - "A6266G", - "C6293T", - "A6299T", - "A6308T", - "A6311G", - "A6314G", - "T6317C", - "C6323T", - "T6342C", - "C6347A", - "A6350T", - "T6362C", - "C6365T", - "T6368C", - "T6392C", - "C6398T", - "T6401C", - "T6404C", - "G6414A", - "A6416G", - "G6419A", - "A6428G", - "C6437A", - "A6452G", - "T6455C", - "G6459A", - "C6467T", - "T6470C", - "A6488T", - "T6500C", - "T6521C", - "T6527C", - "A6533G", - "C6539T", - "C6560T", - "C6566T", - "C6578T", - "A6593C", - "A6599C", - "A6602G", - "C6620G", - "A6626G", - "C6635T", - "T6641G", - "C6644A", - "G6650C", - "A6659T", - "C6666T", - "A6683C", - "T6687C", - "G6695A", - "A6698G", - "T6704C", - "A6707G", - "C6711T", - "G6719A", - "C6725T", - "G6746A", - "T6758C", - "T6764C", - "T6770C", - "C6773A", - "T6779C", - "C6794T", - "T6797C", - "T6800C", - "C6801T", - "T6833C", - "G6836A", - "T6861A", - "A6863G", - "T6884C", - "C6890T", - "G6917A", - "C6923T", - "C6926T", - "A6938T", - "T6944C", - "T6959C", - "C6971T", - "A6986G", - "C6989T", - "A6992G", - "C7001T", - "A7019C", - "C7025T", - "C7028T", - "C7031T", - "C7037T", - "A7040C", - "C7043T", - "A7046G", - "A7052G", - "C7067T", - "A7076C", - "T7079C", - "C7088T", - "T7091C", - "T7097C", - "T7103C", - "G7109A", - "A7130G", - "T7158C", - "C7163T", - "C7172T", - "C7178T", - "G7190A", - "C7196A", - "A7202G", - "C7214T", - "T7217C", - "G7244A", - "C7284T", - "T7304C", - "C7328T", - "C7334T", - "A7340G", - "T7347C", - "A7349G", - "C7352T", - "C7395T", - "G7403A", - "A7424G", - "C7439T", - "A7440G", - "C7442T", - "C7454T", - "A7458G", - "T7460A", - "T7463C", - "A7466G", - "A7544T", - "A7551G", - "G7570A", - "C7577T", - "T7606C", - "G7615A", - "C7624T", - "C7636T", - "C7645T", - "A7646C", - "C7654T", - "G7672A", - "G7678A", - "C7687T", - "T7693C", - "T7699C", - "G7708T", - "C7711T", - "C7720T", - "A7725G", - "G7729A", - "A7744C", - "C7747T", - "A7756G", - "C7757T", - "C7771G", - "G7774T", - "G7780A", - "A7792C", - "G7799A", - "G7807A", - "C7816T", - "C7817G", - "G7822A", - "G7840T", - "C7854T", - "G7859A", - "G7864A", - "G7876A", - "G7903A", - "G7909A", - "A7924G", - "G7939A", - "A7967G", - "T7969C", - "C7978T", - "T7981G", - "C7984T", - "C7990A", - "A7993T", - "A8002G", - "C8005T", - "G8011A", - "G8020A", - "G8029A", - "C8032T", - "T8044C", - "A8053G", - "T8056C", - "C8074T", - "T8080C", - "T8092C", - "T8098C", - "T8158C", - "C8161T", - "C8164T", - "T8170C", - "A8179G", - "A8191G", - "T8194C", - "T8200C", - "G8209A", - "A8212C", - "A8214G", - "T8221C", - "A8229G", - "T8257C", - "T8260C", - "A8266G", - "T8281C", - "G8287A", - "T8308C", - "C8326T", - "T8350C", - "T8353A", - "A8383G", - "C8390T", - "C8407T", - "C8416A", - "T8434C", - "A8443G", - "A8446G", - "C8455T", - "C8458T", - "A8461G", - "C8476G", - "T8477C", - "C8491T", - "T8493C", - "T8494C", - "C8497T", - "G8509A", - "C8515T", - "G8521A", - "C8525T", - "G8528A", - "T8539C", - "A8541C", - "T8566C", - "C8569T", - "T8590C", - "A8596G", - "T8605C", - "C8608T", - "A8621G", - "C8623T", - "C8641T", - "T8650C", - "T8662A", - "C8680T", - "C8686T", - "T8695C", - "T8704C", - "T8710C", - "T8731C", - "T8732C", - "T8737C", - "C8743T", - "G8749A", - "G8750A", - "C8758A", - "T8767C", - "G8768A", - "C8774T", - "C8782T", - "G8797A", - "A8800G", - "C8815T", - "C8818T", - "A8821G", - "C8827T", - "T8833C", - "T8857C", - "C8861T", - "T8866A", - "T8869G", - "C8875T", - "G8878T", - "C8887T", - "C8893A", - "C8896T", - "T8905C", - "A8917G", - "A8935G", - "A8947G", - "T8956C", - "C8968T", - "C8977T", - "C8989G", - "C8998T", - "A9010G", - "C9016T", - "T9034C", - "G9040A", - "T9055C", - "C9091T", - "T9094C", - "T9100G", - "C9109T", - "G9110A", - "A9113G", - "T9115C", - "C9122T", - "C9124T", - "T9133C", - "G9142A", - "C9148T", - "C9151T", - "G9154A", - "G9170A", - "A9178G", - "A9180C", - "C9196T", - "C9199T", - "C9201A", - "G9203A", - "A9208G", - "C9241T", - "A9242C", - "T9250C", - "A9253C", - "C9265T", - "A9268G", - "T9277C", - "T9280C", - "T9283A", - "C9310T", - "C9313G", - "C9326T", - "C9331T", - "A9337G", - "C9340T", - "G9350A", - "C9352T", - "C9355T", - "C9371T", - "A9373G", - "A9376G", - "T9385G", - "C9397T", - "T9400G", - "A9409G", - "C9422T", - "A9434T", - "C9446T", - "C9458G", - "T9466C", - "T9475C", - "C9484T", - "T9499C", - "A9505G", - "G9506T", - "A9521T", - "C9523T", - "A9531C", - "T9547C", - "A9595C", - "C9598T", - "T9604C", - "G9613A", - "G9616A", - "A9632G", - "C9633T", - "C9643T", - "C9646T", - "A9649G", - "C9652T", - "C9661T", - "C9664T", - "C9668A", - "T9669C", - "C9688T", - "A9697T", - "G9707A", - "C9718T", - "T9730G", - "C9733T", - "A9735G", - "T9744C", - "T9745C", - "C9752T", - "T9757C", - "C9764A", - "T9775C", - "G9783A", - "G9790A", - "G9805A", - "G9815A", - "C9820T", - "A9821T", - "G9829A", - "C9838T", - "A9862C", - "C9874T", - "C9886T", - "T9891C", - "T9892C", - "T9896C", - "T9907C", - "C9908T", - "T9917C", - "G9919A", - "T9922A", - "A9925G", - "G9947A", - "T9955C", - "C9958T", - "C10000A", - "G10026A", - "A10036G", - "C10069T", - "C10072T", - "A10099G", - "A10102G", - "C10120A", - "T10130C", - "C10141T", - "C10150T", - "A10159G", - "A10174G", - "G10175A", - "C10180T", - "A10183G", - "C10189T", - "T10204C", - "T10207C", - "A10210G", - "T10213C", - "C10216T", - "T10222C", - "A10228G", - "C10234T", - "C10243T", - "A10244G", - "A10246G", - "C10261T", - "C10291T", - "T10294C", - "G10307A", - "T10321C", - "T10333A", - "C10336G", - "C10339T", - "C10347T", - "C10354T", - "T10357A", - "A10359C", - "C10366T", - "G10372A", - "C10375T", - "C10381T", - "A10384G", - "T10394C", - "C10399T", - "G10411A", - "T10423C", - "T10425C", - "T10426C", - "C10435T", - "C10468T", - "T10471C", - "T10481C", - "T10492C", - "A10495G", - "A10504G", - "C10525A", - "C10531T", - "T10540C", - "T10558C", - "C10561T", - "T10567C", - "T10570C", - "T10576C", - "A10588G", - "A10591G", - "A10603G", - "C10606T", - "T10613C", - "C10614T", - "A10621C", - "C10624T", - "A10633T", - "T10648C", - "C10655T", - "A10667C", - "A10669G", - "C10672A", - "A10708G", - "A10711C", - "G10747T", - "A10750C", - "T10751C", - "C10759T", - "C10762T", - "T10786C", - "A10807G", - "T10832C", - "C10849T", - "T10888C", - "C10918T", - "G10921A", - "C10930T", - "G10951A", - "G10972A", - "C10984T", - "G10996A", - "T11011C", - "A11020G", - "G11027T", - "C11036T", - "C11055T", - "C11059T", - "C11068T", - "C11074T", - "T11080C", - "C11083T", - "C11095T", - "A11113G", - "A11118T", - "T11134A", - "C11155T", - "C11158T", - "C11173A", - "C11182T", - "T11194C", - "A11197G", - "C11200T", - "G11218A", - "A11230G", - "C11236T", - "C11237T", - "C11272T", - "T11287C", - "A11288C", - "C11302T", - "A11322G", - "C11331T", - "A11347G", - "T11357G", - "C11366T", - "C11407T", - "T11408C", - "C11412T", - "T11413C", - "C11417T", - "G11419A", - "C11423T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: S6P, V136I; E1: V116A, L161Q, H394Q, A395T, K404*, T405I, A406G, W407R, T408A, W409S; E2: S185L, N263D, T379A, T418A; nsP1: D11G, S12N, P13F, F14V, M184V, K186E; nsP2: K327R, V375I, P439S, P618L; nsP3: V155A, D217H, I218K, V368M, I390T, V398A, S408G, E432G, A441P, V452M, A456V, G495S; nsP4: I151V, P602S" - }, - "mutations": { - "CP": [ - "S6P", - "V136I" - ], - "E1": [ - "V116A", - "L161Q", - "H394Q", - "A395T", - "K404*", - "T405I", - "A406G", - "W407R", - "T408A", - "W409S" - ], - "E2": [ - "S185L", - "N263D", - "T379A", - "T418A" - ], - "nsP1": [ - "D11G", - "S12N", - "P13F", - "F14V", - "M184V", - "K186E" - ], - "nsP2": [ - "K327R", - "V375I", - "P439S", - "P618L" - ], - "nsP3": [ - "V155A", - "D217H", - "I218K", - "V368M", - "I390T", - "V398A", - "S408G", - "E432G", - "A441P", - "V452M", - "A456V", - "G495S" - ], - "nsP4": [ - "I151V", - "P602S" - ], - "nuc": [ - "A76G", - "C77T", - "G79A", - "T80C", - "C81T", - "C82T", - "T84G", - "A594G", - "A600G", - "T605C", - "G716T", - "G863A", - "T1043C", - "T1632C", - "T1847C", - "T1931C", - "T2036C", - "T2147C", - "G2162A", - "C2252T", - "A2396G", - "C2564T", - "A2629G", - "A2651G", - "G2772A", - "T2922C", - "C2930T", - "C2933T", - "C2964T", - "T2969A", - "C3149T", - "C3371T", - "C3428T", - "A3434G", - "C3502T", - "A3518G", - "C3593T", - "C3734T", - "C3743T", - "T3803C", - "T3845C", - "T4037C", - "G4070A", - "T4145C", - "C4356T", - "C4445T", - "T4495C", - "G4680C", - "T4684A", - "C4694T", - "T4700C", - "C4736G", - "C4889T", - "C4931T", - "G4988A", - "C5018T", - "G5133A", - "A5141G", - "T5153C", - "C5192T", - "T5200C", - "T5224C", - "T5228C", - "A5253G", - "T5273C", - "A5326G", - "T5348G", - "G5352C", - "G5385A", - "C5398T", - "G5514A", - "A5519G", - "T5621A", - "A5648G", - "A5756G", - "A5765G", - "T5876C", - "C6029T", - "A6128G", - "A6153G", - "A6185T", - "G6263C", - "T6398C", - "C6455T", - "C6470T", - "G6602A", - "G6632A", - "T6665C", - "G6698A", - "T6728C", - "C6797T", - "C6870T", - "T6926C", - "T7028C", - "G7058A", - "G7202A", - "C7217T", - "C7347T", - "C7506T", - "T7577C", - "G7648A", - "C7792T", - "A7822G", - "A7939G", - "G7967A", - "T7978C", - "A8020G", - "C8080T", - "G8185A", - "T8188C", - "C8239T", - "T8569C", - "C8590T", - "T8744C", - "C8767T", - "G8800A", - "G9013A", - "C9115T", - "C9117T", - "C9175T", - "G9178A", - "T9241C", - "C9250T", - "A9350G", - "T9397C", - "C9466T", - "T9469C", - "T9523C", - "G9568A", - "A9698G", - "A9805G", - "A9815G", - "T9856C", - "C9868T", - "C10027T", - "G10099A", - "G10159A", - "T10347C", - "T10375C", - "G10384A", - "T10482A", - "C10492T", - "T10606C", - "G11020A", - "T11095C", - "C11122T", - "T11182A", - "G11183A", - "C11185A", - "A11209G", - "A11210T", - "A11212G", - "C11214T", - "C11217G", - "T11219A", - "G11221A", - "A11222G", - "G11226C" - ] - } - }, - "name": "MK028848.1", - "node_attrs": { - "author": { - "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", - "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." - }, - "country": { - "confidence": { - "Australia": 0.8594179371237558, - "Colombia": 0.01950547583384831, - "Honduras": 0.010724138187070941, - "Mexico": 0.010653517355213468 - }, - "entropy": 0.7633782966456711, - "value": "Australia" - }, - "div": 0.22813538588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2018.521917808219, - 2018.521917808219 - ], - "value": 2018.521917808219 - }, - "region": { - "confidence": { - "?": 0.004154205661514894, - "AUSNZ": 0.9768678044229003, - "LA,C": 0.018977989915584918 - }, - "entropy": 0.12088047683890302, - "value": "AUSNZ" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2018": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2018" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E3: V51D; nsP1: E106D; nsP3: E506D" - }, - "mutations": { - "E3": [ - "V51D" - ], - "nsP1": [ - "E106D" - ], - "nsP3": [ - "E506D" - ], - "nuc": [ - "A362C", - "G5549T", - "T8538A" - ] - } - }, - "name": "KR260737.1", - "node_attrs": { - "author": { - "author": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Australia" - }, - "div": 0.23076862588190186, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2013.5, - 2013.5 - ], - "value": 2013.5 - }, - "place_of_collection": { - "value": "Australia" - }, - "region": { - "confidence": { - "AUSNZ": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "AUSNZ" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2013": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2013" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000082", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.9787333437396556, - "Colombia": 0.0036365736132824107, - "Peru": 0.0016736073545995033, - "USA": 0.001586459773622674 - }, - "entropy": 0.15642965063925499, - "value": "Australia" - }, - "div": 0.22204938588190187, - "num_date": { - "confidence": [ - 2012.3397688274981, - 2012.69622653903 - ], - "value": 2012.5124073194527 - }, - "region": { - "confidence": { - "AUSNZ": 0.9907750132575692, - "LA,C": 0.008787771664368872 - }, - "entropy": 0.05416897541578051, - "value": "AUSNZ" - }, - "year": { - "confidence": { - "1905": 0.009594874727071004, - "1994": 0.009896057274555373, - "2013": 0.604738517850819, - "2018": 0.03614946412785277 - }, - "entropy": 2.1662608324772172, - "value": "2013" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: R76G; E1: A347T; E2: P187T; nsP2: K463R, E670D, V677I; nsP3: A366T, V400I, M435V, H481L; nsP4: L42Q, Y268F" - }, - "mutations": { - "CP": [ - "R76G" - ], - "E1": [ - "A347T" - ], - "E2": [ - "P187T" - ], - "nsP2": [ - "K463R", - "E670D", - "V677I" - ], - "nsP3": [ - "A366T", - "V400I", - "M435V", - "H481L" - ], - "nsP4": [ - "L42Q", - "Y268F" - ], - "nuc": [ - "C83A", - "G650A", - "A737G", - "A743G", - "A824G", - "A941G", - "G1316A", - "A1343G", - "C1442A", - "G1460A", - "G1511A", - "C1544G", - "A1682G", - "A1709G", - "T1865A", - "G1946A", - "T2387A", - "A2477C", - "G2582T", - "A2738G", - "G2885A", - "A3037G", - "G3062A", - "T3101G", - "G3206A", - "C3635G", - "A3659C", - "G3678A", - "A3824T", - "A3899C", - "G3920T", - "A4217T", - "G4238A", - "A4337G", - "G4352A", - "A4370C", - "G4427A", - "A4631C", - "A4823G", - "A4901T", - "A5123C", - "G5127A", - "G5229A", - "A5334G", - "T5441A", - "G5471A", - "A5473T", - "A5480C", - "A5567C", - "C5645A", - "G5678A", - "T5827A", - "C5996A", - "G6113T", - "A6122T", - "G6377A", - "A6505T", - "A6509G", - "C6560A", - "A6707T", - "A6914G", - "C7034A", - "A7154T", - "A7298C", - "A7588G", - "G7648A", - "T7693G", - "G7732A", - "C7787G", - "T7948A", - "A7963G", - "G8185A", - "A8230G", - "A8311G", - "T8368G", - "C8459A", - "G8626A", - "C8659A", - "G8668A", - "A8762C", - "A9061G", - "C9122A", - "A9145T", - "A9364C", - "A9379G", - "C9442A", - "C9484G", - "A9529T", - "G9550A", - "A9835G", - "A10474G", - "G11039A", - "G11248A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: K37R; CP: D55E; E1: S14P, V344I, T347A; E2: A315V, T320S, V382I, F389L; nsP2: M224I, A578T; nsP3: V79I, P335T, A357T, V359I, A363E, V406A, A439E, A442V, H471Q, T490I, T495N, A521V", - "GRI Lineage Root": "C" - }, - "mutations": { - "6k": [ - "K37R" - ], - "CP": [ - "D55E" - ], - "E1": [ - "S14P", - "V344I", - "T347A" - ], - "E2": [ - "A315V", - "T320S", - "V382I", - "F389L" - ], - "nsP2": [ - "M224I", - "A578T" - ], - "nsP3": [ - "V79I", - "P335T", - "A357T", - "V359I", - "A363E", - "V406A", - "A439E", - "A442V", - "H471Q", - "T490I", - "T495N", - "A521V" - ], - "nuc": [ - "T161C", - "T278C", - "G305A", - "T332C", - "G437A", - "T440C", - "A509G", - "T533C", - "C536T", - "T599C", - "A680G", - "G731A", - "T741C", - "T755C", - "G779A", - "T804C", - "C920T", - "T1056C", - "G1100A", - "G1109A", - "T1116C", - "C1139T", - "T1190C", - "C1199A", - "G1205A", - "A1265G", - "T1280C", - "C1304T", - "G1319A", - "G1343A", - "A1349G", - "G1406A", - "A1421G", - "A1439G", - "C1458T", - "T1529C", - "G1544A", - "C1565T", - "C1608T", - "T1667G", - "T1694C", - "C1712A", - "T1718C", - "T1733C", - "A1736G", - "T1742C", - "G1757A", - "C1769T", - "T1772C", - "T1778C", - "C1844T", - "G1859T", - "T1874C", - "T1907C", - "C1916T", - "C1928T", - "A1934G", - "T1976C", - "T2006C", - "C2009T", - "T2105C", - "G2114A", - "T2126A", - "C2141T", - "G2168T", - "T2177C", - "A2246G", - "A2258G", - "T2261C", - "C2291T", - "G2321A", - "A2357G", - "T2364C", - "C2394T", - "C2429T", - "C2435T", - "T2510C", - "C2540T", - "G2555A", - "T2579C", - "C2615T", - "A2633G", - "G2645A", - "T2681C", - "C2690T", - "A2696C", - "T2714C", - "T2756C", - "T2792C", - "C2813A", - "C2849T", - "T2906C", - "C2922T", - "C2930T", - "T2966C", - "G2990A", - "T3047C", - "T3065C", - "T3080C", - "T3093C", - "C3119T", - "T3158C", - "C3161T", - "C3227T", - "A3245T", - "T3248C", - "T3296C", - "A3329G", - "A3374T", - "G3381A", - "C3395T", - "C3407T", - "C3444T", - "T3473C", - "C3534T", - "T3570C", - "T3593A", - "T3600C", - "C3608T", - "T3647C", - "A3653G", - "C3671T", - "C3677A", - "T3683C", - "G3692A", - "T3698C", - "T3719C", - "T3728C", - "C3800T", - "T3824C", - "T3848C", - "T3851C", - "A3890G", - "C3899T", - "T3983C", - "T3987C", - "T4061C", - "A4109G", - "T4145C", - "G4148A", - "T4211C", - "C4226T", - "C4235T", - "C4253T", - "T4259C", - "G4266A", - "C4304T", - "T4325C", - "A4391C", - "C4397T", - "T4436C", - "C4535T", - "C4541T", - "T4544A", - "A4565G", - "T4601A", - "G4610A", - "A4643G", - "C4658T", - "T4664C", - "A4688G", - "T4709C", - "T4712C", - "C4739T", - "C4760T", - "T4772C", - "A4778G", - "A4814G", - "A4874G", - "C4880G", - "T4886C", - "T4931C", - "G4988A", - "G4997A", - "T5003C", - "C5034A", - "G5057C", - "A5099G", - "G5100A", - "G5106A", - "C5119A", - "G5126A", - "T5138C", - "C5147T", - "C5150T", - "G5159A", - "T5174C", - "T5180C", - "C5234T", - "T5246A", - "T5248C", - "C5261T", - "C5297T", - "T5301C", - "A5303G", - "G5345A", - "C5347A", - "A5348G", - "C5356T", - "T5417C", - "A5420G", - "T5444G", - "A5453G", - "A5465G", - "T5474C", - "C5480T", - "C5500T", - "C5515A", - "C5525A", - "A5546G", - "T5564C", - "T5582C", - "C5593T", - "T5603C", - "C5612A", - "T5615C", - "C5618T", - "G5621T", - "T5657C", - "C5693T", - "T5766C", - "A5840G", - "C5841T", - "C5844T", - "C5862T", - "T5867C", - "T5876C", - "G5906A", - "A5921G", - "T5933C", - "A6023G", - "T6026C", - "T6029C", - "T6041C", - "C6080T", - "C6084T", - "T6104C", - "T6119C", - "A6128G", - "C6173T", - "C6227T", - "T6230C", - "G6251A", - "A6308G", - "T6362C", - "G6395A", - "T6497A", - "C6551T", - "A6569G", - "C6578T", - "A6611G", - "G6617A", - "C6620A", - "T6687C", - "T6704C", - "G6719A", - "T6737C", - "G6746A", - "T6770C", - "T6815C", - "T6827C", - "T6833C", - "C6839T", - "T6878C", - "C6879T", - "T6911C", - "C6953T", - "C6971T", - "C6989T", - "A6992G", - "C7005T", - "A7034G", - "G7058A", - "A7076G", - "T7154C", - "C7187T", - "G7190A", - "A7202G", - "T7226C", - "G7256A", - "C7275T", - "T7304A", - "C7328T", - "C7352T", - "A7406T", - "T7463C", - "G7588T", - "T7606C", - "T7699C", - "C7726A", - "A7732G", - "C7747T", - "G7780A", - "A7792G", - "G7843A", - "T7849C", - "G7864A", - "C7918T", - "T7925C", - "C7936T", - "G7963A", - "G8029A", - "A8053G", - "A8071G", - "T8158C", - "T8170C", - "T8173C", - "T8194C", - "G8224A", - "C8227T", - "G8230A", - "C8239T", - "A8242G", - "G8287A", - "C8374T", - "C8437T", - "T8494C", - "T8500G", - "T8518C", - "G8527A", - "C8548A", - "A8554G", - "C8569T", - "T8605C", - "C8623T", - "A8626G", - "T8629C", - "T8698C", - "T8704C", - "G8716A", - "C8734T", - "T8737C", - "G8797A", - "C8815T", - "C8818T", - "T8854C", - "T8857C", - "C8861T", - "C8887T", - "T8986C", - "A9079T", - "T9095C", - "T9100C", - "C9103T", - "C9172T", - "A9268G", - "C9313T", - "C9331T", - "T9385G", - "T9400A", - "T9430C", - "C9451T", - "T9454C", - "A9505G", - "C9507T", - "T9517C", - "A9521T", - "C9523T", - "G9538A", - "A9556T", - "A9601G", - "T9655C", - "C9664T", - "T9694C", - "A9697G", - "G9707A", - "T9709C", - "T9730A", - "T9745C", - "C9814T", - "C9817T", - "T9856C", - "C9859T", - "C9868T", - "T9892C", - "A9942G", - "C9946T", - "T10040C", - "A10156G", - "C10180T", - "T10204C", - "C10243T", - "T10273G", - "C10300T", - "C10318T", - "C10354T", - "C10420T", - "T10423C", - "T10426C", - "T10492C", - "C10531T", - "T10555C", - "T10576C", - "A10588G", - "A10597T", - "C10624T", - "T10642C", - "T10648C", - "T10702A", - "A10741G", - "G10747A", - "C10759T", - "C10777T", - "A10819G", - "C10849T", - "T10861C", - "T10888A", - "C10912T", - "G10951A", - "G10981A", - "T11008A", - "T11011C", - "G11030A", - "C11036T", - "A11039G", - "C11059T", - "C11074T", - "T11080C", - "T11119C", - "C11122T", - "C11158T", - "C11254T", - "T11355C", - "C11364T", - "C11366T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P98Q; E1: P14S, I344V, A347T; E2: Q81R, M275I, V315A; nsP1: D127N; nsP3: N100H, T335P, E337D, T357A, L358P, I490T, T512A, T524A" - }, - "mutations": { - "CP": [ - "P98Q" - ], - "E1": [ - "P14S", - "I344V", - "A347T" - ], - "E2": [ - "Q81R", - "M275I", - "V315A" - ], - "nsP1": [ - "D127N" - ], - "nsP3": [ - "N100H", - "T335P", - "E337D", - "T357A", - "L358P", - "I490T", - "T512A", - "T524A" - ], - "nuc": [ - "T378C", - "G423A", - "C473T", - "A617T", - "T1061C", - "A1202G", - "A1205G", - "G1265A", - "A1268C", - "A1319G", - "T1340C", - "T1352C", - "C1469T", - "C1502T", - "C1529T", - "T1589C", - "T1619C", - "A1634G", - "C1706T", - "C1721T", - "C1742T", - "T1829C", - "A1850G", - "C1874T", - "C1907T", - "T1922C", - "T1997C", - "C2006T", - "A2126T", - "G2258A", - "C2328T", - "T2394C", - "T2429C", - "T2540C", - "C2573T", - "C2579T", - "A2639G", - "A2645T", - "T2666C", - "T2690C", - "A2813C", - "T2846C", - "A2885G", - "A3095G", - "T3227C", - "C3296T", - "A3416C", - "T3444C", - "T3477C", - "A3581G", - "G3590A", - "A3593T", - "C3596T", - "T3642C", - "T3671C", - "C3698T", - "T3716C", - "C3728T", - "C3806T", - "T3815C", - "G3860T", - "C3887T", - "A3917G", - "C3987T", - "C4259A", - "A4313G", - "A4329C", - "C4391A", - "C4409T", - "T4425C", - "A4514T", - "T4535C", - "C4538T", - "A4610G", - "C4616T", - "T4739C", - "A4805T", - "C4820T", - "T4844C", - "T4901C", - "C4979T", - "G4985T", - "A5034C", - "A5042C", - "G5084A", - "A5100G", - "T5104C", - "G5144A", - "T5150C", - "C5174T", - "C5192T", - "A5246G", - "C5255T", - "A5354T", - "G5453A", - "T5500C", - "C5555T", - "A5565G", - "A5601G", - "G5639A", - "G5789A", - "G5840A", - "T5841C", - "G5864A", - "T5993C", - "T6080C", - "C6144T", - "T6167A", - "T6182C", - "C6323T", - "T6464C", - "G6509A", - "T6518C", - "T6551C", - "A6552C", - "C6566T", - "C6677T", - "A6698G", - "T6758C", - "T6764C", - "T6797C", - "C6870T", - "T6879C", - "G6887A", - "C6977T", - "C7062T", - "A7082T", - "C7088T", - "C7106T", - "G7223A", - "C7226T", - "A7256G", - "T7347C", - "T7388C", - "T7436C", - "C7699T", - "C7854A", - "T7918C", - "T7936C", - "A7993G", - "C8045T", - "C8194T", - "A8218T", - "A8224G", - "T8299C", - "C8416T", - "G8521A", - "G8554A", - "T8635A", - "C8644T", - "T8767C", - "A8805G", - "T8818C", - "C8836T", - "T8851C", - "T8905C", - "C8926T", - "C8986T", - "C9022T", - "A9046G", - "T9103C", - "T9104C", - "T9115C", - "A9301G", - "C9326T", - "G9388A", - "T9451C", - "G9505A", - "T9507C", - "T9577C", - "C9688T", - "G9790A", - "T9823C", - "C9832T", - "C9860T", - "T9868C", - "C9892T", - "C10040T", - "A10075G", - "C10120T", - "G10156A", - "T10207A", - "G10297A", - "C10576T", - "T10597A", - "T10600C", - "A10702G", - "T10744C", - "C10762A", - "C10771T", - "A10888T", - "A10951G", - "A11030G", - "G11039A", - "T11254C", - "T11366C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: S141P; E2: R81Q, P191S, A196V, S372L; nsP1: I64V, N127D; nsP2: K338R; nsP3: Q392R, T490S; nsP4: M276A" - }, - "mutations": { - "E1": [ - "S141P" - ], - "E2": [ - "R81Q", - "P191S", - "A196V", - "S372L" - ], - "nsP1": [ - "I64V", - "N127D" - ], - "nsP2": [ - "K338R" - ], - "nsP3": [ - "Q392R", - "T490S" - ], - "nsP4": [ - "M276A" - ], - "nuc": [ - "A234G", - "C356T", - "A423G", - "T434C", - "C807T", - "T1529C", - "T1643C", - "T1784C", - "C1829T", - "A1853G", - "T1916C", - "C1955T", - "G1958A", - "T2015C", - "T2237C", - "A2662G", - "C2690T", - "T3195C", - "A3497G", - "T3899C", - "C3941T", - "T4100C", - "C4322T", - "T4616C", - "C4739T", - "T4760C", - "A4895G", - "C5075T", - "A5206G", - "T5273G", - "C5342T", - "A5499T", - "G5588A", - "A6062G", - "C6074T", - "T6098C", - "T6197A", - "G6344A", - "C6467T", - "A6528G", - "T6529C", - "G6698A", - "T6944C", - "T7062C", - "C7118T", - "T7211C", - "C7624T", - "A8104G", - "A8215G", - "G8805A", - "C8818T", - "G9046A", - "C9134T", - "T9139C", - "C9150T", - "T9529C", - "C9577T", - "C9678T", - "C10186T", - "T10421C", - "C10651A", - "T10720C" - ] - } - }, - "name": "KC344472.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.2299820358819019, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1984.0013661202186, - 1984.8989071038252 - ], - "value": 1984.0013661202186 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1984": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1984" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: K223R; E1: T162I; E2: H91Q, S177R, Y306F; nsP1: F423L; nsP2: I21L, V643I; nsP3: T197I, A344V, Q347R, P356S, G402E, A473V" - }, - "mutations": { - "CP": [ - "K223R" - ], - "E1": [ - "T162I" - ], - "E2": [ - "H91Q", - "S177R", - "Y306F" - ], - "nsP1": [ - "F423L" - ], - "nsP2": [ - "I21L", - "V643I" - ], - "nsP3": [ - "T197I", - "A344V", - "Q347R", - "P356S", - "G402E", - "A473V" - ], - "nuc": [ - "A12G", - "G293A", - "A389G", - "C470A", - "C1160T", - "C1172T", - "T1311C", - "G1562A", - "A1655G", - "A1710C", - "A1712G", - "A1724T", - "C1841A", - "A1865T", - "A1937G", - "C1949T", - "C2027T", - "A2108T", - "C2115T", - "A2162G", - "C2192T", - "T2237C", - "C2276T", - "A2300C", - "A2426G", - "A2456C", - "T2462A", - "G2780A", - "A2936G", - "C2949T", - "C3158T", - "T3195C", - "C3209T", - "C3239T", - "C3321T", - "T3443C", - "G3467A", - "G3576A", - "C3671T", - "T3686A", - "T3770C", - "A3896G", - "T3899C", - "T4223C", - "G4499A", - "C4621T", - "C4784T", - "C4871T", - "T4985C", - "C5018T", - "C5062T", - "A5071G", - "C5097T", - "G5236A", - "C5319T", - "C5375T", - "C5449T", - "A5460C", - "A5600G", - "C5993T", - "T6125C", - "T6173C", - "A6251G", - "C6326T", - "T6401C", - "A6416G", - "A6488G", - "C6518T", - "G6575A", - "T6699C", - "C6740T", - "A6929G", - "A6938G", - "C7127T", - "A7511C", - "C7609T", - "C7651T", - "C7918T", - "T8045C", - "T8086G", - "T8200A", - "A8229G", - "C8236T", - "G8509A", - "T8695C", - "T8833C", - "T8836G", - "A9092C", - "C9223T", - "C9422T", - "A9480T", - "C9481T", - "G9748A", - "G9799A", - "T9871C", - "C10072T", - "A10159T", - "T10279C", - "T10354C", - "C10423T", - "C10465T", - "T10481C", - "C10485T", - "C10606T", - "A10762G", - "T10768C", - "C10846T", - "C10861T", - "A11026T", - "T11357C", - "C11366T" - ] - } - }, - "name": "KC344473.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.2361561958819019, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1997.0013698630137, - 1997.898904109589 - ], - "value": 1997.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: R328K" - }, - "mutations": { - "nsP2": [ - "R328K" - ], - "nuc": [ - "G2632A", - "C3737T", - "G4577A", - "C5951A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP4: K567R" - }, - "mutations": { - "nsP4": [ - "K567R" - ], - "nuc": [ - "C530T", - "G2096A", - "C2363T", - "C2507T", - "C2759T", - "A4932C", - "C6437T", - "A6545G", - "T6839C", - "A6893G", - "C7298T", - "A7402G", - "T8080C", - "C8128T", - "C8752G", - "C10000T", - "C10615T", - "A11008G", - "C11119T", - "C11185T" - ] - } - }, - "name": "KC344503.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.2288709658819019, - "host": { - "value": "Culex aikenii sensu lato" - }, - "num_date": { - "confidence": [ - 1977.101095890411, - 1977.9986301369863 - ], - "value": 1977.9986301369863 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1977": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: R81Q; nsP1: N127D; nsP3: Q395R", - "GRI Lineage Root": "C.1" - }, - "mutations": { - "E2": [ - "R81Q" - ], - "nsP1": [ - "N127D" - ], - "nsP3": [ - "Q395R" - ], - "nuc": [ - "A423G", - "T770C", - "C1394T", - "T1547C", - "T1730C", - "C2018T", - "C2027T", - "A2066G", - "C2714T", - "C3836T", - "T3899C", - "T4046C", - "C4154T", - "C4901T", - "A5215G", - "C6878T", - "T7088C", - "C7573T", - "C7612T", - "A8287G", - "G8805A", - "A9118G", - "T9313C", - "C10141T", - "G10231A", - "T10357A", - "G10921A", - "C10984T", - "T11357C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: I142T, E345D; E2: T379I; nsP1: A173V; nsP2: V643I; nsP3: T13M, P496L" - }, - "mutations": { - "E1": [ - "I142T", - "E345D" - ], - "E2": [ - "T379I" - ], - "nsP1": [ - "A173V" - ], - "nsP2": [ - "V643I" - ], - "nsP3": [ - "T13M", - "P496L" - ], - "nuc": [ - "C562T", - "T620C", - "G1046A", - "C1061T", - "C1208T", - "G1325A", - "T2168C", - "C2171T", - "C2207T", - "T2328C", - "C2444T", - "C2501T", - "C2507T", - "T2531C", - "G2633A", - "C2826A", - "G2897A", - "C2981T", - "C3311T", - "T3395C", - "A3521G", - "G3576A", - "C3869T", - "T3956C", - "C4069T", - "T4097A", - "G4463A", - "G4799A", - "T5105C", - "G5348A", - "C5518T", - "C5792T", - "T6959C", - "G7124A", - "G7397A", - "G7879A", - "C7888T", - "C8576T", - "A9415G", - "C9451T", - "T9478C", - "T9556C", - "T9674C", - "C9699T", - "C9886T", - "C10000T", - "C10153T", - "C10339T", - "T10425C", - "A10681G", - "G11035T" - ] - } - }, - "name": "KC344510.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.23350530588190188, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.4716788780702 - ], - "value": 2000.0013661202186 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1" - }, - "GRI Lineage Level 3": { - "value": "C.1" - }, - "GRI Lineage Level 4": { - "value": "C.1" - }, - "GRI Lineage Level 5": { - "value": "C.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: R463K, G669S" - }, - "mutations": { - "nsP2": [ - "R463K", - "G669S" - ], - "nuc": [ - "C404T", - "T758C", - "C807T", - "C1688A", - "T2291C", - "C2756T", - "C2949T", - "C2966T", - "T3011C", - "G3037A", - "T3281C", - "T3443C", - "G3654A", - "C3671T", - "A5120G", - "C6615A", - "C6897T", - "T7275C", - "T8188C", - "G9343A", - "G9748A", - "G10393A", - "C10561T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: P304S" - }, - "mutations": { - "E2": [ - "P304S" - ], - "nuc": [ - "A83G", - "C1718T", - "A2948G", - "C5489T", - "C6179T", - "G7199A", - "C7214T", - "C9473T", - "A10807G", - "A11077T" - ] - } - }, - "name": "KC344511.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.23190054588190187, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2001.0013698630137, - 2001.3892903418782 - ], - "value": 2001.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2001": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1" - }, - "GRI Lineage Level 3": { - "value": "C.1" - }, - "GRI Lineage Level 4": { - "value": "C.1" - }, - "GRI Lineage Level 5": { - "value": "C.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C3992A", - "A6893G", - "T9079C", - "T11161C" - ] - }, - "labels": { - "GRI Lineage Root": "C.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: T521A; nsP2: S624L" - }, - "mutations": { - "nsP1": [ - "T521A" - ], - "nsP2": [ - "S624L" - ], - "nuc": [ - "A1460G", - "A1605G", - "C3520T", - "C3869T", - "C4430T", - "C5309T", - "C5333T", - "G5966A", - "C7540T", - "A9538G", - "C10555T" - ] - } - }, - "name": "KC344474.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.23233186588190188, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2001.0013698630137, - 2001.9986301369863 - ], - "value": 2001.3575813906334 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2001": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1.0" - }, - "GRI Lineage Level 3": { - "value": "C.1.0" - }, - "GRI Lineage Level 4": { - "value": "C.1.0" - }, - "GRI Lineage Level 5": { - "value": "C.1.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: T424S, P466S; nsP3: V331A" - }, - "mutations": { - "nsP2": [ - "T424S", - "P466S" - ], - "nsP3": [ - "V331A" - ], - "nuc": [ - "A2378G", - "A2919T", - "C3045T", - "T3800C", - "A4601T", - "C4784T", - "T5023C", - "C5567T", - "C6737T", - "A7681G", - "T7682C", - "T8000C", - "G9448A", - "C10255T", - "A10678C", - "C10918T" - ] - } - }, - "name": "KC344475.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.2327740058819019, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2003.0013698630137, - 2003.898904109589 - ], - "value": 2003.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2003": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1.0" - }, - "GRI Lineage Level 3": { - "value": "C.1.0" - }, - "GRI Lineage Level 4": { - "value": "C.1.0" - }, - "GRI Lineage Level 5": { - "value": "C.1.0" - } - } - } - ], - "name": "NODE_0000070", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999999902708743 - }, - "entropy": 2.0920332078942935e-7, - "value": "Panama" - }, - "div": 0.2313688158819019, - "num_date": { - "confidence": [ - 2000.7902634053232, - 2001.6511838621232 - ], - "value": 2001.1264365351863 - }, - "region": { - "confidence": { - "LA,C": 0.999999999641864 - }, - "entropy": 8.297360339235326e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2001": 0.9983977913316626 - }, - "entropy": 0.014930538183241618, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1.0" - }, - "GRI Lineage Level 3": { - "value": "C.1.0" - }, - "GRI Lineage Level 4": { - "value": "C.1.0" - }, - "GRI Lineage Level 5": { - "value": "C.1.0" - } - } - } - ], - "name": "NODE_0000069", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999999913040938 - }, - "entropy": 1.878927165651654e-7, - "value": "Panama" - }, - "div": 0.23101990588190188, - "num_date": { - "confidence": [ - 2000.6539500744332, - 2001.225747428363 - ], - "value": 2000.8709563754787 - }, - "region": { - "confidence": { - "LA,C": 0.9999999996836105 - }, - "entropy": 7.368584296570305e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "2001": 0.9987292551946682 - }, - "entropy": 0.012682008802327362, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1" - }, - "GRI Lineage Level 3": { - "value": "C.1" - }, - "GRI Lineage Level 4": { - "value": "C.1" - }, - "GRI Lineage Level 5": { - "value": "C.1" - } - } - } - ], - "name": "NODE_0000068", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999957881500906 - }, - "entropy": 0.00006537518360625694, - "value": "Panama" - }, - "div": 0.2290066458819019, - "num_date": { - "confidence": [ - 1998.656785084672, - 1999.2732758266957 - ], - "value": 1998.9922408180812 - }, - "region": { - "confidence": { - "LA,C": 0.9999998713451947 - }, - "entropy": 0.0000022251932886183015, - "value": "LA,C" - }, - "year": { - "confidence": { - "1995": 0.007818514077846155, - "1997": 0.008334382584605452, - "2000": 0.5280450245910359, - "2001": 0.24491334946476767 - }, - "entropy": 1.8833974689750852, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.1" - }, - "GRI Lineage Level 2": { - "value": "C.1" - }, - "GRI Lineage Level 3": { - "value": "C.1" - }, - "GRI Lineage Level 4": { - "value": "C.1" - }, - "GRI Lineage Level 5": { - "value": "C.1" - } - } - } - ], - "name": "NODE_0000067", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999998995817745 - }, - "entropy": 0.0000019266255152841053, - "value": "Panama" - }, - "div": 0.2267991558819019, - "num_date": { - "confidence": [ - 1977.788538878489, - 1977.895698680376 - ], - "value": 1977.8477483857685 - }, - "region": { - "confidence": { - "LA,C": 0.9999999971182525 - }, - "entropy": 6.076789474531254e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.0036970971708605834, - "1977": 0.8940598913287021, - "1978": 0.0045966058968961165, - "1984": 0.0075403794881649805 - }, - "entropy": 0.7395713477437835, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - } - ], - "name": "NODE_0000066", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999997575193412 - }, - "entropy": 0.0000043909306046287104, - "value": "Panama" - }, - "div": 0.2264188558819019, - "num_date": { - "confidence": [ - 1977.7292078961614, - 1977.8622212630348 - ], - "value": 1977.798261370268 - }, - "region": { - "confidence": { - "LA,C": 0.99999999509605 - }, - "entropy": 1.0063191515157148e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.0068076526157817355, - "1977": 0.799603721150093, - "1978": 0.008417082979297353, - "1984": 0.014903525680156189 - }, - "entropy": 1.260286620433675, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - } - ], - "name": "NODE_0000065", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999968352671661 - }, - "entropy": 0.000049704119839638176, - "value": "Panama" - }, - "div": 0.22553092588190188, - "num_date": { - "confidence": [ - 1977.4802083367954, - 1977.7220653283744 - ], - "value": 1977.6094227189046 - }, - "region": { - "confidence": { - "LA,C": 0.9999999255293538 - }, - "entropy": 0.0000013285340610107157, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.009412713264647458, - "1977": 0.7153687696326226, - "1978": 0.011571071923848257, - "1984": 0.022183386104024348 - }, - "entropy": 1.6750053465038044, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C4088A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: S118A; nsP1: A509V; nsP2: K223R, H244Y, I375V; nsP3: D362G, Y447H" - }, - "mutations": { - "E2": [ - "S118A" - ], - "nsP1": [ - "A509V" - ], - "nsP2": [ - "K223R", - "H244Y", - "I375V" - ], - "nsP3": [ - "D362G", - "Y447H" - ], - "nuc": [ - "A26G", - "T173C", - "C284T", - "T378C", - "G395A", - "C638T", - "C761T", - "A779G", - "C804T", - "T920C", - "C1403T", - "G1421A", - "C1570T", - "C1733T", - "C1892T", - "C2147T", - "T2237C", - "A2317G", - "C2379T", - "A2489C", - "C2537T", - "C2564T", - "A2772G", - "G2852T", - "C2966T", - "T3134C", - "C3204T", - "C3413T", - "C3683T", - "C3737T", - "C3983T", - "C4244G", - "T4388C", - "C4712T", - "C5018T", - "A5116G", - "A5246C", - "G5351A", - "T5370C", - "C5384T", - "C5447A", - "C5576T", - "A5612T", - "C5771T", - "C5933T", - "A6389G", - "T6521C", - "C6677A", - "T6692C", - "T6797C", - "A6929G", - "C7088T", - "C7464T", - "G7496A", - "T7682C", - "G7909A", - "C8035T", - "C8041T", - "T8299C", - "T8434C", - "C8602T", - "C8620T", - "G8872A", - "T8915G", - "C9124T", - "T9139G", - "G10258A", - "C10762T", - "C10771T", - "T10849A", - "T11333C", - "C11378A" - ] - } - }, - "name": "L00930.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W.", - "value": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W." - }, - "country": { - "confidence": { - "Colombia": 0.0032618862464869175, - "Mexico": 0.0018113207770533238, - "Panama": 0.9808219497630047, - "Peru": 0.0025203365796446237 - }, - "entropy": 0.14249360558722074, - "value": "Panama" - }, - "div": 0.2272626658819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1961.941454074133, - 1961.9986301369863 - ], - "value": 1961.9986301369863 - }, - "region": { - "confidence": { - "LA,C": 0.9990386321695258 - }, - "entropy": 0.00821879945028915, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1961": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A31T", - "T146C", - "G359A", - "C587T", - "C807T", - "C815T", - "T857C", - "C1056T", - "G1241A", - "C1394T", - "T1847C", - "C2519T", - "G2651A", - "A2867G", - "T4097G", - "T4298C", - "T4637C", - "C5657T", - "T6143C", - "G6206A", - "A6350T", - "C6722T", - "G6734T", - "C6977T", - "C7151T", - "C7214T", - "T7951C", - "C8164T", - "G8542A", - "A8653T", - "T9139C", - "C9163T", - "C9622T", - "G9943A", - "A10159C", - "C10516T", - "T10558C", - "C10930T", - "G11071A", - "C11407T", - "T11409C", - "C11412T", - "T11414C", - "C11417T" - ] - }, - "labels": { - "GRI Lineage Root": "C.2" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: G76R; E1: A163V; E3: K26E; nsP1: P520S; nsP4: S591C" - }, - "mutations": { - "CP": [ - "G76R" - ], - "E1": [ - "A163V" - ], - "E3": [ - "K26E" - ], - "nsP1": [ - "P520S" - ], - "nsP4": [ - "S591C" - ], - "nuc": [ - "C1602T", - "T5363C", - "T6578C", - "A7473T", - "G7787A", - "A8462G", - "T8905C", - "G9166A", - "C10488T" - ] - } - }, - "name": "KC344506.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.22535078588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1961.9575311560668, - 1961.9986301369863 - ], - "value": 1961.9986301369863 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1961": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2" - }, - "GRI Lineage Level 3": { - "value": "C.2" - }, - "GRI Lineage Level 4": { - "value": "C.2" - }, - "GRI Lineage Level 5": { - "value": "C.2" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T2963C", - "C3158T", - "T4647C", - "C6890T", - "C8686T", - "C11119T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E303D, I373T; nsP2: A215V" - }, - "mutations": { - "E2": [ - "E303D", - "I373T" - ], - "nsP2": [ - "A215V" - ], - "nuc": [ - "G1541A", - "A1757G", - "C2293T", - "C4361T", - "C4820T", - "A4997G", - "G5210A", - "C6000T", - "T6879C", - "T8251C", - "G9472T", - "T9681C", - "T9793G", - "C10009T" - ] - } - }, - "name": "KC344488.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.22634338588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1966.0013698630137, - 1966.898904109589 - ], - "value": 1966.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1966": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1966" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2" - }, - "GRI Lineage Level 3": { - "value": "C.2" - }, - "GRI Lineage Level 4": { - "value": "C.2" - }, - "GRI Lineage Level 5": { - "value": "C.2" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T6401C", - "T8662C" - ] - }, - "labels": { - "GRI Lineage Root": "C.2.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: T187A; nsP4: S596C" - }, - "mutations": { - "E2": [ - "T187A" - ], - "nsP4": [ - "S596C" - ], - "nuc": [ - "C1772T", - "A1856G", - "C2537T", - "C5924T", - "T7400C", - "G7403A", - "T7469C", - "A7488T", - "A9122G", - "T9508C", - "A10825G", - "C11418T" - ] - } - }, - "name": "KC344518.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.22625218588190185, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1965.0013698630137, - 1965.898904109589 - ], - "value": 1965.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1965": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1965" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2.0" - }, - "GRI Lineage Level 3": { - "value": "C.2.0" - }, - "GRI Lineage Level 4": { - "value": "C.2.0" - }, - "GRI Lineage Level 5": { - "value": "C.2.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: A56V; E1: V208I; E2: T213K; nsP3: L385Q" - }, - "mutations": { - "CP": [ - "A56V" - ], - "E1": [ - "V208I" - ], - "E2": [ - "T213K" - ], - "nsP3": [ - "L385Q" - ], - "nuc": [ - "C791T", - "A2631C", - "T5185A", - "C7728T", - "C7888T", - "T8278C", - "C9201A", - "G9898A", - "G10622A" - ] - } - }, - "name": "KC344471.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.22606494588190185, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1962.1470952391612, - 1962.9986301369863 - ], - "value": 1962.9986301369863 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1962": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2.0" - }, - "GRI Lineage Level 3": { - "value": "C.2.0" - }, - "GRI Lineage Level 4": { - "value": "C.2.0" - }, - "GRI Lineage Level 5": { - "value": "C.2.0" - } - } - } - ], - "name": "NODE_0000075", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999999923672651 - }, - "entropy": 1.658921893945744e-7, - "value": "Panama" - }, - "div": 0.22527127588190185, - "num_date": { - "confidence": [ - 1962.8316999794392, - 1962.9494825561792 - ], - "value": 1962.9015092917452 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997223704 - }, - "entropy": 6.501732270368201e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1961": 0.09897229823287047, - "1962": 0.8376188316096428, - "1965": 0.02426974226349439, - "1966": 0.009267650650287139 - }, - "entropy": 0.7282851258026614, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2.0" - }, - "GRI Lineage Level 3": { - "value": "C.2.0" - }, - "GRI Lineage Level 4": { - "value": "C.2.0" - }, - "GRI Lineage Level 5": { - "value": "C.2.0" - } - } - } - ], - "name": "NODE_0000074", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999999447744954 - }, - "entropy": 0.0000010907296727514108, - "value": "Panama" - }, - "div": 0.22509387588190186, - "num_date": { - "confidence": [ - 1962.752506881463, - 1962.9245635875754 - ], - "value": 1962.844980001449 - }, - "region": { - "confidence": { - "LA,C": 0.9999999980811757 - }, - "entropy": 4.124816174014818e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1961": 0.22586265145924547, - "1962": 0.6778274713162057, - "1965": 0.01947832600222567, - "1966": 0.021516795290924665 - }, - "entropy": 1.1273481074680594, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2" - }, - "GRI Lineage Level 3": { - "value": "C.2" - }, - "GRI Lineage Level 4": { - "value": "C.2" - }, - "GRI Lineage Level 5": { - "value": "C.2" - } - } - } - ], - "name": "NODE_0000073", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9999987470517508 - }, - "entropy": 0.00001973654829025499, - "value": "Panama" - }, - "div": 0.22456015588190187, - "num_date": { - "confidence": [ - 1961.8483888829617, - 1961.9538944812166 - ], - "value": 1961.9060982766534 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993923915 - }, - "entropy": 1.3748706712518952e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1961": 0.9924595162918106, - "1962": 0.00609192443509556 - }, - "entropy": 0.05340181148597014, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.2" - }, - "GRI Lineage Level 2": { - "value": "C.2" - }, - "GRI Lineage Level 3": { - "value": "C.2" - }, - "GRI Lineage Level 4": { - "value": "C.2" - }, - "GRI Lineage Level 5": { - "value": "C.2" - } - } - } - ], - "name": "NODE_0000072", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.9982447369144029 - }, - "entropy": 0.015237172699824782, - "value": "Panama" - }, - "div": 0.22076858588190187, - "num_date": { - "confidence": [ - 1961.1097937141378, - 1961.3555944824375 - ], - "value": 1961.244437771567 - }, - "region": { - "confidence": { - "LA,C": 0.9999995553421286 - }, - "entropy": 0.000007157057301765936, - "value": "LA,C" - }, - "year": { - "confidence": { - "1961": 0.9908910817859146, - "1962": 0.003423889424177315 - }, - "entropy": 0.07949538259446542, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: V39M; E1: Y373F; E2: A301T, V315A; E3: R58K; nsP2: K203R; nsP3: S348P, A516T" - }, - "mutations": { - "6k": [ - "V39M" - ], - "E1": [ - "Y373F" - ], - "E2": [ - "A301T", - "V315A" - ], - "E3": [ - "R58K" - ], - "nsP2": [ - "K203R" - ], - "nsP3": [ - "S348P", - "A516T" - ], - "nuc": [ - "T146C", - "C192T", - "C401T", - "T725C", - "T773C", - "C807T", - "G812A", - "C815T", - "T944A", - "C986T", - "A1049G", - "G1265A", - "T1304C", - "C1403T", - "C1448T", - "T1458C", - "T1859C", - "C2046T", - "A2257G", - "C2261T", - "G2357C", - "T2402C", - "T2462A", - "C2477T", - "T2504C", - "G2699A", - "T2849C", - "C2975T", - "C3014T", - "C3080T", - "A3122T", - "C3204T", - "C3296T", - "C3321T", - "T3380C", - "A3521G", - "C3791T", - "C3827T", - "C3941T", - "T4094C", - "A4124C", - "T4226C", - "A4454C", - "C4457T", - "T4502C", - "A4532C", - "G4577A", - "C4772T", - "T5073C", - "T5105C", - "T5129C", - "G5144A", - "C5174T", - "C5211T", - "T5330C", - "C5342T", - "G5465A", - "C5489T", - "G5577A", - "G5840A", - "G5903A", - "T5993C", - "C6026T", - "T6080C", - "C6095T", - "T6170C", - "T6174C", - "C6179T", - "C6347T", - "T6368C", - "C6431T", - "T6470C", - "T6522C", - "A6533G", - "G6575A", - "C6755T", - "C6833T", - "T6861C", - "T6879C", - "T7005C", - "C7022T", - "C7100T", - "C7226T", - "A7301G", - "T7347C", - "A7382G", - "A7391G", - "C7699T", - "G7789A", - "A7798G", - "C8041T", - "T8200C", - "A8224G", - "T8374C", - "A8467G", - "G8559A", - "C8576T", - "C8698T", - "C8737T", - "C8770T", - "C8926T", - "A8935G", - "T9052C", - "C9112T", - "T9145C", - "C9290T", - "A9409G", - "T9451A", - "G9464A", - "T9507C", - "T9682C", - "C9739T", - "G9790A", - "T9793C", - "C9860T", - "T9907C", - "G9947A", - "A10075G", - "C10120A", - "G10156A", - "G10219A", - "T10243C", - "T10252G", - "C10366T", - "T10471C", - "A10495G", - "T10558C", - "C10561T", - "A10621T", - "C10654T", - "C10861T", - "C10984T", - "A11118T", - "T11254C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: A20V, N183T; nsP2: R138K; nsP3: N346D, Y447H" - }, - "mutations": { - "CP": [ - "A20V", - "N183T" - ], - "nsP2": [ - "R138K" - ], - "nsP3": [ - "N346D", - "Y447H" - ], - "nuc": [ - "G344T", - "G1259A", - "A1260C", - "C1367T", - "A1571G", - "T1643G", - "A1994C", - "C2039T", - "G2062A", - "G2246A", - "C2357T", - "T2477C", - "C2504T", - "C2507T", - "G2780T", - "C2849T", - "C3317T", - "T3374C", - "C3380T", - "C3383T", - "A3503G", - "T3818C", - "C3869T", - "A4022G", - "C4061T", - "C4106T", - "C4124T", - "C4250T", - "C4307T", - "C4430T", - "A4514T", - "C4886A", - "G5066A", - "A5067G", - "T5370C", - "A5669G", - "C6398T", - "C6897T", - "G6914A", - "C7028T", - "T7187C", - "A7346G", - "A7409G", - "C7620T", - "A8109C", - "C8452T", - "C8518T", - "T8734C", - "G8779A", - "A9019G", - "T9034C", - "C9310T", - "A9589G", - "C9682T", - "C9778T", - "C9907T", - "C10048T", - "T10366C", - "C10648T", - "C10699T", - "T10861C", - "T11287C" - ] - } - }, - "name": "KC344507.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.2336144458819019, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1997.4561643835616, - 1997.4561643835616 - ], - "value": 1997.4561643835616 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: V416I; nsP2: R788I" - }, - "mutations": { - "nsP1": [ - "V416I" - ], - "nsP2": [ - "R788I" - ], - "nuc": [ - "G1290A", - "G4012T", - "G4187A", - "A5471G", - "G5591A", - "A5759G", - "C6242A", - "A6461G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: R222H, A508V; nsP2: S198C, E336D; nsP3: K26R, T335P, S407F, S451R, V521A" - }, - "mutations": { - "nsP1": [ - "R222H", - "A508V" - ], - "nsP2": [ - "S198C", - "E336D" - ], - "nsP3": [ - "K26R", - "T335P", - "S407F", - "S451R", - "V521A" - ], - "nuc": [ - "C35A", - "T143C", - "G314A", - "C425T", - "G709A", - "A806T", - "C1106T", - "C1133T", - "C1567T", - "C1991T", - "C2171A", - "A2213G", - "A2241T", - "T2588C", - "G2603T", - "G2657T", - "C2949T", - "C3050A", - "T3195C", - "T3281C", - "C3359T", - "T3671C", - "C3774T", - "T3812C", - "A4108G", - "A4136G", - "A4238G", - "C4244T", - "G4463A", - "G4718A", - "C4751T", - "G4904A", - "A4919G", - "T4940A", - "A5034C", - "C5251T", - "C5384A", - "G5396T", - "A5496C", - "A5544C", - "C5582T", - "T5593C", - "C6029T", - "T6044C", - "C6380T", - "C6383T", - "T6410C", - "C6815T", - "C6827T", - "G6872A", - "T7091C", - "C7172T", - "C7316T", - "C7849T", - "C8158T", - "C8194T", - "G8344A", - "C8515T", - "T8536C", - "C8740T", - "C8893T", - "T9055C", - "C9091T", - "C9163T", - "A9205T", - "C9344T", - "C9352T", - "C9397T", - "A9442G", - "A9451C", - "C9643T", - "T9728C", - "C9940T", - "C10468T", - "C10492T", - "G10957A", - "C11119T", - "T11365G" - ] - } - }, - "name": "MF590066.1", - "node_attrs": { - "author": { - "author": "Juarez,D., Guevara,C., Wiley,M., Torre,A., Palacios,G., Halsey,E.S., Ampuero,S. and Leguia,M.", - "value": "Juarez,D., Guevara,C., Wiley,M., Torre,A., Palacios,G., Halsey,E.S., Ampuero,S. and Leguia,M." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23711071588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2013.4808219178083, - 2013.4808219178083 - ], - "value": 2013.4808219178083 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2013": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2013" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: V179I; nsP1: N458I", - "GRI Lineage Root": "C.0" - }, - "mutations": { - "E2": [ - "V179I" - ], - "nsP1": [ - "N458I" - ], - "nuc": [ - "A1417T", - "T1967C", - "A2012G", - "C2033T", - "C3146T", - "T3371C", - "C3698A", - "T3756C", - "C3947T", - "G4559A", - "T4833C", - "G5045A", - "G5537A", - "T6518C", - "C7487T", - "T8737A", - "A9037T", - "G9098A", - "C9241T", - "T9529C", - "C9721T", - "G9829A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP4: T604I" - }, - "mutations": { - "nsP4": [ - "T604I" - ], - "nuc": [ - "T1334C", - "A3581T", - "C6704T", - "C7513T", - "A8668G" - ] - } - }, - "name": "KC344526.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.23260327588190188, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1994.7072156665874, - 1994.9986301369863 - ], - "value": 1994.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1994": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1994" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0" - }, - "GRI Lineage Level 3": { - "value": "C.0" - }, - "GRI Lineage Level 4": { - "value": "C.0" - }, - "GRI Lineage Level 5": { - "value": "C.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T4274C", - "C5564T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2312T", - "T3935C", - "C5138T", - "A5144G", - "T5147C", - "T5150C", - "C5723T" - ] - } - }, - "name": "KC344490.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23295269588190187, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1995.4412365328196, - 1995.9986301369863 - ], - "value": 1995.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0" - }, - "GRI Lineage Level 3": { - "value": "C.0" - }, - "GRI Lineage Level 4": { - "value": "C.0" - }, - "GRI Lineage Level 5": { - "value": "C.0" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "C.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: G193R; E3: P41L; nsP2: H614R; nsP3: I218M" - }, - "mutations": { - "E2": [ - "G193R" - ], - "E3": [ - "P41L" - ], - "nsP2": [ - "H614R" - ], - "nsP3": [ - "I218M" - ], - "nuc": [ - "T1535G", - "C2883T", - "A3490G", - "T3935A", - "A4685G", - "A7744T", - "G8341A", - "C8508T", - "C8614T", - "C9025T", - "G9140A", - "T10459C", - "T10849A", - "T11354G" - ] - } - }, - "name": "DQ390224.2", - "node_attrs": { - "author": { - "author": "Anishchenko,M., Bowen,R.A., Paessler,S., Austgen,L., Greene,I.P. and Weaver,S.C.", - "value": "Anishchenko,M., Bowen,R.A., Paessler,S., Austgen,L., Greene,I.P. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23356870588190187, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2006.1, - 2006.1 - ], - "value": 2006.1 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2006": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2006" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0.0" - }, - "GRI Lineage Level 3": { - "value": "C.0.0" - }, - "GRI Lineage Level 4": { - "value": "C.0.0" - }, - "GRI Lineage Level 5": { - "value": "C.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP4: N233D" - }, - "mutations": { - "nsP4": [ - "N233D" - ], - "nuc": [ - "C2927A", - "C3575T", - "G4196A", - "T6191C", - "A6399G", - "T6473C", - "C6635T", - "G7076T", - "T9868C", - "A10036T" - ] - } - }, - "name": "KC344504.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.23323556588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1998.0013698630137, - 1998.7820652782134 - ], - "value": 1998.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1998": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1998" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0.0" - }, - "GRI Lineage Level 3": { - "value": "C.0.0" - }, - "GRI Lineage Level 4": { - "value": "C.0.0" - }, - "GRI Lineage Level 5": { - "value": "C.0.0" - } - } - } - ], - "name": "NODE_0000162", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.999999210048187 - }, - "entropy": 0.000012983735368302536, - "value": "Peru" - }, - "div": 0.23233916588190187, - "num_date": { - "confidence": [ - 1997.7329732338646, - 1998.610227769681 - ], - "value": 1997.9171961117818 - }, - "region": { - "confidence": { - "LA,C": 0.9999999886152389 - }, - "entropy": 2.2449057845017234e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1994": 0.008430505227526221, - "1995": 0.0401838688713395, - "1998": 0.8764638114580517, - "2006": 0.003851699778023005 - }, - "entropy": 0.7628298522409024, - "value": "1998" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0.0" - }, - "GRI Lineage Level 3": { - "value": "C.0.0" - }, - "GRI Lineage Level 4": { - "value": "C.0.0" - }, - "GRI Lineage Level 5": { - "value": "C.0.0" - } - } - } - ], - "name": "NODE_0000079", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999099093163 - }, - "entropy": 0.000001670833418207494, - "value": "Peru" - }, - "div": 0.23233916588190187, - "num_date": { - "confidence": [ - 1995.27453587579, - 1995.9501757866212 - ], - "value": 1995.757276849644 - }, - "region": { - "confidence": { - "LA,C": 0.999999998646196 - }, - "entropy": 2.9573524141986103e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1994": 0.14082974526910966, - "1995": 0.7720203703716306, - "1997": 0.003393681393664756, - "1998": 0.03504546583237702 - }, - "entropy": 0.943280660689659, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0" - }, - "GRI Lineage Level 3": { - "value": "C.0" - }, - "GRI Lineage Level 4": { - "value": "C.0" - }, - "GRI Lineage Level 5": { - "value": "C.0" - } - } - } - ], - "name": "NODE_0000078", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999999771967345 - }, - "entropy": 4.492959881656687e-7, - "value": "Peru" - }, - "div": 0.23216445588190188, - "num_date": { - "confidence": [ - 1994.9134112455536, - 1994.9828507671825 - ], - "value": 1994.9533539571169 - }, - "region": { - "confidence": { - "LA,C": 0.9999999998683808 - }, - "entropy": 3.1783775958102396e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1994": 0.8193067622176707, - "1995": 0.11668240385611242, - "1997": 0.012721148344344483, - "1998": 0.0060916472439495484 - }, - "entropy": 0.8109447326950299, - "value": "1994" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C.0" - }, - "GRI Lineage Level 2": { - "value": "C.0" - }, - "GRI Lineage Level 3": { - "value": "C.0" - }, - "GRI Lineage Level 4": { - "value": "C.0" - }, - "GRI Lineage Level 5": { - "value": "C.0" - } - } - } - ], - "name": "NODE_0000077", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9999940624601308 - }, - "entropy": 0.00008526596328841911, - "value": "Peru" - }, - "div": 0.23022485588190186, - "num_date": { - "confidence": [ - 1994.6134988109277, - 1994.7999606523608 - ], - "value": 1994.7179134488763 - }, - "region": { - "confidence": { - "LA,C": 0.9999999917648887 - }, - "entropy": 1.6487276997585703e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1994": 0.7193503574706899, - "1995": 0.10353210222223314, - "1997": 0.03899042220118182, - "1998": 0.007609134925570846 - }, - "entropy": 1.3942430316841696, - "value": "1994" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - } - ], - "name": "NODE_0000076", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9998491842509538 - }, - "entropy": 0.00170928427657767, - "value": "Peru" - }, - "div": 0.22875794588190188, - "num_date": { - "confidence": [ - 1994.1095235663558, - 1994.4847814968928 - ], - "value": 1994.3090157098807 - }, - "region": { - "confidence": { - "LA,C": 0.9999998607782372 - }, - "entropy": 0.0000023970315003718826, - "value": "LA,C" - }, - "year": { - "confidence": { - "1994": 0.5711049829527265, - "1995": 0.08384910980553538, - "1997": 0.08891013334667282, - "1998": 0.009505905336396395 - }, - "entropy": 2.064377057522005, - "value": "1994" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - } - ], - "name": "NODE_0000071", - "node_attrs": { - "country": { - "confidence": { - "Panama": 0.997725143967084, - "Peru": 0.0011044084648169365 - }, - "entropy": 0.019129331535784347, - "value": "Panama" - }, - "div": 0.21927132588190187, - "num_date": { - "confidence": [ - 1960.916681784841, - 1961.2142629321531 - ], - "value": 1961.075224718839 - }, - "region": { - "confidence": { - "LA,C": 0.9999997658083583 - }, - "entropy": 0.00000389938556712597, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.003946111375046251, - "1961": 0.8870557241587179, - "1962": 0.008157510837433777, - "1977": 0.003258389372668335 - }, - "entropy": 0.7822626451865655, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - } - ], - "name": "NODE_0000064", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.0013966057676074672, - "Panama": 0.996710160936459, - "Peru": 0.0011713773038811409 - }, - "entropy": 0.027296845855836423, - "value": "Panama" - }, - "div": 0.21466611588190188, - "num_date": { - "confidence": [ - 1959.7552381707126, - 1960.3404729176086 - ], - "value": 1960.123029890096 - }, - "region": { - "confidence": { - "LA,C": 0.9999968575027255 - }, - "entropy": 0.00004431763106068784, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.015087275175583587, - "1961": 0.5260910229218834, - "1962": 0.021348047274137086, - "1977": 0.012949574497198463 - }, - "entropy": 2.509486986387267, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "C" - }, - "GRI Lineage Level 1": { - "value": "C" - }, - "GRI Lineage Level 2": { - "value": "C" - }, - "GRI Lineage Level 3": { - "value": "C" - }, - "GRI Lineage Level 4": { - "value": "C" - }, - "GRI Lineage Level 5": { - "value": "C" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A4805C", - "A5357C", - "G10195T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: R68G, N104S, E154A; E1: Y72H, I142T, T162I, A226S, Q242H, E292D, A343V; E2: Y127H, S177R, V179I, V316I, A383S, T386I, L410I; E3: A28S, P54S; nsP1: M471L; nsP2: T122I, T153A, I446M, Y503H, T506M, T537S, N592S, V626I, L641M, E656D, I736V; nsP3: T197I, S348P, T349I, E350A, L358P, A363E, R367E, Q392H, I413V, D422G, L430S, A433T, A439S, A440V, N445D, M452L, N468I, T495N, I503F, L511P, P513S, S520A, A521V; nsP4: Y597H" - }, - "mutations": { - "CP": [ - "R68G", - "N104S", - "E154A" - ], - "E1": [ - "Y72H", - "I142T", - "T162I", - "A226S", - "Q242H", - "E292D", - "A343V" - ], - "E2": [ - "Y127H", - "S177R", - "V179I", - "V316I", - "A383S", - "T386I", - "L410I" - ], - "E3": [ - "A28S", - "P54S" - ], - "nsP1": [ - "M471L" - ], - "nsP2": [ - "T122I", - "T153A", - "I446M", - "Y503H", - "T506M", - "T537S", - "N592S", - "V626I", - "L641M", - "E656D", - "I736V" - ], - "nsP3": [ - "T197I", - "S348P", - "T349I", - "E350A", - "L358P", - "A363E", - "R367E", - "Q392H", - "I413V", - "D422G", - "L430S", - "A433T", - "A439S", - "A440V", - "N445D", - "M452L", - "N468I", - "T495N", - "I503F", - "L511P", - "P513S", - "S520A", - "A521V" - ], - "nsP4": [ - "Y597H" - ], - "nuc": [ - "A26C", - "C65T", - "T266A", - "G293T", - "A335T", - "C356T", - "C426T", - "G497A", - "A509G", - "A524G", - "A626C", - "A674T", - "G716A", - "G731A", - "T755C", - "T758C", - "T770C", - "T773G", - "C788T", - "C920T", - "T935C", - "T981C", - "G1034A", - "C1037T", - "T1052C", - "G1121A", - "C1139T", - "C1151T", - "A1163G", - "T1190C", - "A1265G", - "C1272T", - "T1340C", - "A1349G", - "A1391G", - "C1412T", - "T1422C", - "C1430T", - "A1442G", - "A1455C", - "C1458T", - "G1478A", - "C1502T", - "G1544A", - "T1547C", - "C1604A", - "C1608T", - "C1652T", - "T1694C", - "C1697T", - "G1703A", - "T1718C", - "C1721T", - "T1733A", - "A1736G", - "C1761T", - "T1772A", - "T1811C", - "T1829C", - "C1844T", - "G1859T", - "T1922C", - "C1956T", - "A1973C", - "T1976C", - "T2006C", - "C2009T", - "C2014T", - "T2051C", - "A2106G", - "A2108T", - "A2297G", - "T2364C", - "C2498T", - "T2510C", - "G2555A", - "T2579C", - "C2615T", - "A2633G", - "G2651A", - "T2681C", - "C2690T", - "A2696C", - "C2711T", - "C2813T", - "G2816A", - "C2849T", - "C2886T", - "T2906C", - "C2930T", - "T2966C", - "C2981A", - "G2984A", - "A2987G", - "C3014T", - "C3026T", - "C3044T", - "C3050T", - "T3093C", - "T3113C", - "T3156C", - "T3158C", - "C3166T", - "T3176A", - "A3182G", - "C3200T", - "A3245T", - "T3248C", - "A3258T", - "T3281C", - "T3293C", - "T3296C", - "C3299T", - "G3302A", - "C3353T", - "A3362G", - "T3371G", - "A3374G", - "T3386C", - "A3389G", - "C3407T", - "T3410C", - "C3417T", - "A3424G", - "A3449G", - "C3458T", - "T3473C", - "T3509C", - "G3525A", - "T3548C", - "T3570A", - "G3602A", - "G3611T", - "G3617T", - "C3626T", - "T3647C", - "C3671T", - "C3674T", - "C3677A", - "T3683C", - "T3716C", - "T3743C", - "C3774T", - "T3815C", - "C3833T", - "A3855G", - "G3860A", - "C3899T", - "T3920A", - "G3923A", - "G4058A", - "C4121T", - "G4157A", - "T4169C", - "C4247T", - "G4262A", - "C4304T", - "C4322T", - "C4334T", - "A4400G", - "T4404C", - "G4406A", - "C4538T", - "T4562C", - "A4565G", - "C4569T", - "T4595C", - "C4616T", - "C4621T", - "C4640T", - "T4709C", - "A4736G", - "A4778G", - "C4790T", - "C4841T", - "G4868A", - "T4886C", - "G4988A", - "T5003C", - "T5006C", - "A5033G", - "C5069T", - "T5073C", - "C5077T", - "A5080C", - "T5104C", - "C5119A", - "A5120G", - "C5123T", - "G5126A", - "A5130G", - "G5131A", - "T5138A", - "A5141G", - "C5147T", - "G5159A", - "T5174C", - "G5183A", - "C5184T", - "G5198A", - "G5207T", - "G5210A", - "C5261T", - "A5268G", - "A5296G", - "C5315T", - "C5319T", - "T5320C", - "G5328A", - "T5330C", - "C5333T", - "G5346T", - "A5348T", - "C5350T", - "A5364G", - "T5369C", - "A5385T", - "A5420G", - "A5434T", - "T5450C", - "T5474C", - "C5480T", - "A5484C", - "C5513T", - "C5515A", - "A5538T", - "T5543A", - "T5563C", - "C5568T", - "T5589G", - "C5593T", - "T5615C", - "T5633C", - "T5642C", - "A5645T", - "T5657C", - "A5678G", - "T5720C", - "T5766C", - "A5837G", - "C5841T", - "C5862T", - "G5864A", - "T5876C", - "G5897A", - "T5942C", - "T5993C", - "T6005C", - "T6011C", - "T6041C", - "C6059T", - "C6084T", - "T6125C", - "A6128G", - "C6144T", - "C6158T", - "C6161A", - "T6167C", - "C6179T", - "T6197C", - "C6209A", - "T6230C", - "A6245G", - "G6251A", - "T6272C", - "C6293A", - "A6308T", - "C6347T", - "C6437T", - "A6479G", - "A6515G", - "T6527C", - "T6531C", - "A6569G", - "C6620G", - "C6651T", - "A6659C", - "C6671T", - "C6680T", - "T6687C", - "G6719A", - "T6758C", - "T6770C", - "G6776A", - "T6788A", - "T6815C", - "G6821T", - "T6833C", - "C6839T", - "C6842T", - "C6857T", - "T6878C", - "G6887A", - "C6989T", - "C7025T", - "A7034G", - "T7050C", - "A7052G", - "G7058A", - "C7067T", - "A7082G", - "G7109A", - "T7154C", - "C7163T", - "C7187T", - "G7190A", - "A7202G", - "T7226C", - "A7253G", - "C7275T", - "C7284T", - "T7295C", - "A7310G", - "C7328T", - "C7352T", - "C7367A", - "A7376G", - "A7424G", - "C7427T", - "T7436C", - "C7464T", - "T7491C", - "T7508C", - "G7588T", - "G7627A", - "G7714A", - "G7723A", - "A7744G", - "C7747T", - "A7763G", - "G7765A", - "G7768A", - "G7780A", - "C7795T", - "G7822C", - "G7828A", - "G7840A", - "G7855A", - "G7864A", - "A7872G", - "C7873T", - "A7897C", - "A7942G", - "T7981G", - "G7996C", - "T8000C", - "A8022C", - "C8038T", - "A8053G", - "C8074T", - "T8098C", - "G8101A", - "T8122C", - "G8131A", - "T8158C", - "C8161T", - "T8170C", - "A8212G", - "C8236T", - "C8326T", - "C8329T", - "T8362C", - "C8398T", - "T8419C", - "C8437T", - "G8468T", - "A8470C", - "C8476T", - "G8524A", - "T8539C", - "C8546T", - "A8551C", - "A8558C", - "A8563G", - "C8623T", - "A8653T", - "C8680T", - "T8704C", - "T8722C", - "T8737C", - "C8743T", - "C8776T", - "C8782T", - "T8785C", - "G8797A", - "A8812C", - "C8813T", - "C8815A", - "C8818T", - "T8833C", - "T8845C", - "T8854C", - "T8857C", - "T8860C", - "G8878A", - "A8881T", - "C8893T", - "C8926T", - "C8929T", - "T8942C", - "T8959C", - "A8974G", - "C8980T", - "T8983G", - "C8989A", - "A8995G", - "G9040A", - "T9052C", - "T9094A", - "G9098A", - "T9100C", - "T9104C", - "C9148T", - "G9157A", - "C9187T", - "C9199T", - "A9205G", - "A9268G", - "T9277C", - "A9289G", - "A9328G", - "T9385A", - "C9394T", - "T9400C", - "A9442G", - "C9481T", - "G9509A", - "A9532G", - "G9538A", - "A9572C", - "T9634C", - "A9679C", - "G9710T", - "C9720T", - "C9751T", - "T9757C", - "T9775C", - "C9781T", - "G9790A", - "C9791A", - "C9850T", - "C9899T", - "T9922C", - "A10061C", - "C10072T", - "A10075G", - "T10084C", - "T10130C", - "A10171G", - "A10174G", - "C10180T", - "T10204C", - "T10214C", - "A10276T", - "C10300T", - "T10321C", - "C10354T", - "C10366T", - "C10402T", - "T10425C", - "A10450G", - "C10465T", - "C10468T", - "C10477T", - "C10485T", - "T10492C", - "A10513G", - "T10558C", - "T10570C", - "C10606T", - "A10612G", - "C10624T", - "T10642C", - "G10676T", - "A10726C", - "C10759T", - "A10789G", - "T10810C", - "T10856C", - "T10861C", - "A10876C", - "A10891T", - "C10903T", - "C10912T", - "G10981A", - "G10996A", - "A11002G", - "T11011C", - "C11028T", - "C11036T", - "C11059T", - "C11074T", - "C11086T", - "C11095T", - "T11119C", - "C11122A", - "G11125A", - "C11158T", - "T11179C", - "C11236A", - "A11257G", - "C11296T", - "C11311T", - "G11328A", - "T11359G", - "G11361A", - "C11364T", - "C11378A" - ] - } - }, - "name": "KC344476.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Panama": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Panama" - }, - "div": 0.24104578588190187, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2003.0013698630137, - 2003.898904109589 - ], - "value": 2003.0013698630137 - }, - "place_of_collection": { - "value": "Panama" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2003": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2003" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A3260T" - ] - }, - "labels": { - "GRI Lineage Root": "A" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: K37R; CP: R68K, P71S; E2: E75K, T213K, A214T, V378A, K391R, S395A; nsP2: R328K, E340V, I679V; nsP3: E337D, A357P, V361E, A363E, E438G, A440T, S487C, A516T, A521V" - }, - "mutations": { - "6k": [ - "K37R" - ], - "CP": [ - "R68K", - "P71S" - ], - "E2": [ - "E75K", - "T213K", - "A214T", - "V378A", - "K391R", - "S395A" - ], - "nsP2": [ - "R328K", - "E340V", - "I679V" - ], - "nsP3": [ - "E337D", - "A357P", - "V361E", - "A363E", - "E438G", - "A440T", - "S487C", - "A516T", - "A521V" - ], - "nuc": [ - "A26G", - "T272C", - "C326T", - "C356T", - "C371T", - "A509G", - "C545T", - "G731A", - "T755C", - "T1116C", - "C1139T", - "A1163G", - "G1184A", - "T1190C", - "C1301T", - "C1304T", - "A1349G", - "C1458T", - "A1463G", - "T1493C", - "A1571T", - "T1694C", - "C1697T", - "A1724T", - "A1736G", - "G1757A", - "C1761T", - "T1772C", - "C1841A", - "A1937T", - "A1994T", - "T2051C", - "G2168A", - "G2264A", - "C2291T", - "A2300T", - "C2429T", - "C2453T", - "A2489C", - "C2507T", - "T2510C", - "G2552A", - "G2555A", - "T2579C", - "G2632A", - "C2648T", - "A2668T", - "T2681C", - "A2696T", - "C2813T", - "C2849T", - "T2906C", - "G2954T", - "T2963C", - "A2993G", - "A3062G", - "G3071A", - "T3113C", - "A3116T", - "C3161T", - "C3230T", - "T3296C", - "C3350T", - "A3374G", - "C3413T", - "T3443C", - "C3534T", - "G3566A", - "T3647C", - "C3659T", - "C3671T", - "C3677A", - "A3684G", - "T3698C", - "T3716C", - "C3737T", - "C3800T", - "C3875T", - "A3914G", - "T3983A", - "C3998T", - "G4187A", - "G4241A", - "A4265G", - "A4313G", - "G4547A", - "G4559T", - "T4625C", - "G4634A", - "T4709C", - "C4769T", - "A4778G", - "G4958A", - "G4988A", - "C5000T", - "C5010A", - "C5018T", - "A5042C", - "G5057A", - "G5100C", - "T5113A", - "C5119A", - "A5120G", - "A5141G", - "T5153C", - "T5174C", - "C5192T", - "T5243C", - "C5252T", - "C5309A", - "A5344G", - "G5349A", - "C5384T", - "A5453G", - "A5490T", - "T5501C", - "T5540C", - "G5577A", - "C5593T", - "A5597G", - "T5603C", - "T5615C", - "C5693T", - "T5720C", - "T5766C", - "C5841T", - "C5862T", - "G5864A", - "T5993C", - "T6035C", - "T6041C", - "C6074T", - "C6084T", - "A6092G", - "C6144T", - "C6161A", - "T6170C", - "T6230C", - "G6251A", - "A6263T", - "T6272C", - "C6323T", - "T6362G", - "C6398T", - "T6455C", - "T6473C", - "A6533G", - "G6575A", - "T6687C", - "T6707G", - "C6725T", - "C6740T", - "T6770A", - "T6779C", - "C6794T", - "T6815C", - "T6878C", - "C6953T", - "C6989T", - "C7025T", - "C7031T", - "A7052G", - "G7058A", - "C7163T", - "C7187T", - "C7328T", - "A7349G", - "C7352T", - "A7382T", - "T7400C", - "A7576G", - "G7764A", - "C7772T", - "G7780A", - "A7783G", - "G7819A", - "G7840A", - "A7942G", - "T7951C", - "C7955T", - "T7969A", - "C7984T", - "T8080C", - "G8131A", - "A8212G", - "T8353C", - "C8407T", - "C8437T", - "C8476T", - "A8554G", - "T8566C", - "C8632A", - "T8662C", - "G8671A", - "C8692T", - "T8737C", - "G8786A", - "G8797A", - "C8818T", - "T8851C", - "T8860C", - "T8869C", - "A8917C", - "A8935G", - "C8980T", - "C9169T", - "C9201A", - "G9203A", - "A9253G", - "T9262C", - "C9265T", - "A9268G", - "C9314T", - "C9331T", - "G9379A", - "C9404A", - "T9454C", - "T9478C", - "T9529C", - "C9685T", - "T9696C", - "C9718T", - "A9735G", - "T9746G", - "C9781T", - "G9790A", - "C9796T", - "T9922C", - "A9942G", - "C10051T", - "C10120T", - "T10204C", - "A10270T", - "T10321C", - "C10354T", - "C10366T", - "C10432T", - "C10465T", - "A10495G", - "C10522T", - "C10561T", - "T10690C", - "G10747A", - "C10759T", - "T10810C", - "T10861C", - "A10927T", - "T10960C", - "C11059T", - "T11062C", - "C11122T", - "C11158T", - "C11173T", - "A11275G", - "C11331T", - "T11333C", - "T11357C", - "C11407T", - "C11412T", - "C11417T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: S325P; E2: H85Y, T120I, T187I; nsP1: T203A, A207S, D436G; nsP2: H244Y; nsP3: A228V", - "GRI Lineage Root": "A.8" - }, - "mutations": { - "E1": [ - "S325P" - ], - "E2": [ - "H85Y", - "T120I", - "T187I" - ], - "nsP1": [ - "T203A", - "A207S", - "D436G" - ], - "nsP2": [ - "H244Y" - ], - "nsP3": [ - "A228V" - ], - "nuc": [ - "C233T", - "A651G", - "G663T", - "T758C", - "A1351G", - "T1643A", - "T2174C", - "C2379T", - "C2564T", - "A2633G", - "T2696C", - "C3053T", - "C3200T", - "C3458T", - "T3779C", - "T3935A", - "T4424A", - "C4714T", - "C5042T", - "T5312C", - "T5474C", - "T6026C", - "G6707A", - "T7131C", - "T7184C", - "A7322G", - "T8170C", - "C8816T", - "C8922T", - "C9123T", - "A9712G", - "T9871C", - "C10396T", - "C10792T", - "T10973C", - "C11418T", - "A11437T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: Q159R, S182I, K213R; nsP3: L492Q" - }, - "mutations": { - "E2": [ - "Q159R", - "S182I", - "K213R" - ], - "nsP3": [ - "L492Q" - ], - "nuc": [ - "G2441A", - "T5506A", - "A7034G", - "A9039G", - "G9108T", - "A9201G", - "G9514A" - ] - } - }, - "name": "KU059753.1", - "node_attrs": { - "author": { - "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.2330624158819019, - "host": { - "value": "Equus asinus x Equus caballus" - }, - "num_date": { - "confidence": [ - 1942.2481121134056, - 1942.9986301369863 - ], - "value": 1942.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1942": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1942" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.8" - }, - "GRI Lineage Level 2": { - "value": "A.8" - }, - "GRI Lineage Level 3": { - "value": "A.8" - }, - "GRI Lineage Level 4": { - "value": "A.8" - }, - "GRI Lineage Level 5": { - "value": "A.8" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: I120T, T221A, V394D, L410F; nsP2: Y244H; nsP3: A482V; nsP4: A146S" - }, - "mutations": { - "E2": [ - "I120T", - "T221A", - "V394D", - "L410F" - ], - "nsP2": [ - "Y244H" - ], - "nsP3": [ - "A482V" - ], - "nsP4": [ - "A146S" - ], - "nuc": [ - "T1619C", - "C2174T", - "T2379C", - "C2501T", - "G3167A", - "C3779T", - "G4571A", - "A4934G", - "C5476T", - "G6138T", - "A6584G", - "C7184T", - "C7888T", - "C8149G", - "C8170T", - "C8182T", - "G8272T", - "T8922C", - "A9224G", - "T9744A", - "C9791T", - "C9871T", - "T10396C", - "T10792C", - "C11083T" - ] - } - }, - "name": "KC344430.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pfeffer,M., Marriott,K., Kang,W., Kinney,R.M., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pfeffer,M., Marriott,K., Kang,W., Kinney,R.M., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.2327177958819019, - "host": { - "value": "Equus caballus" - }, - "num_date": { - "confidence": [ - 1971.0150684931507, - 1971.0150684931507 - ], - "value": 1971.0150684931507 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1971": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.8" - }, - "GRI Lineage Level 2": { - "value": "A.8" - }, - "GRI Lineage Level 3": { - "value": "A.8" - }, - "GRI Lineage Level 4": { - "value": "A.8" - }, - "GRI Lineage Level 5": { - "value": "A.8" - } - } - } - ], - "name": "NODE_0000042", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.00466970548163329, - "Peru": 0.9950332789386218 - }, - "entropy": 0.033108480359922164, - "value": "Peru" - }, - "div": 0.2314612458819019, - "num_date": { - "confidence": [ - 1941.8232121788153, - 1942.7908692556084 - ], - "value": 1942.550486918848 - }, - "region": { - "confidence": { - "LA,C": 0.9999998173513653 - }, - "entropy": 0.0000030951279910330726, - "value": "LA,C" - }, - "year": { - "confidence": { - "1938": 0.02305199629263584, - "1942": 0.7973702880093335, - "1943": 0.004658540304221339, - "1971": 0.005519039616938387 - }, - "entropy": 1.2629188115634873, - "value": "1942" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.8" - }, - "GRI Lineage Level 2": { - "value": "A.8" - }, - "GRI Lineage Level 3": { - "value": "A.8" - }, - "GRI Lineage Level 4": { - "value": "A.8" - }, - "GRI Lineage Level 5": { - "value": "A.8" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: V48M; CP: P62S; E2: A147V, A192V, M408I, L410F; nsP1: I487V; nsP2: T647M; nsP3: P343S, V359I, R450K; nsP4: R68K, P563S" - }, - "mutations": { - "6k": [ - "V48M" - ], - "CP": [ - "P62S" - ], - "E2": [ - "A147V", - "A192V", - "M408I", - "L410F" - ], - "nsP1": [ - "I487V" - ], - "nsP2": [ - "T647M" - ], - "nsP3": [ - "P343S", - "V359I", - "R450K" - ], - "nsP4": [ - "R68K", - "P563S" - ], - "nuc": [ - "A101G", - "C284T", - "C689T", - "C761T", - "G1259A", - "A1503G", - "A1850T", - "T2105C", - "C2501T", - "A3104G", - "G3455A", - "C3589T", - "C4031T", - "C4088T", - "C4244A", - "A4661G", - "A4733G", - "T4847C", - "C4974T", - "C5058T", - "G5106A", - "G5380A", - "G5905A", - "T6167A", - "C6879T", - "T7154C", - "C7178T", - "C7389T", - "C7745T", - "A8053G", - "T8260C", - "C9003T", - "C9138T", - "A9328G", - "G9448A", - "G9616A", - "C9739T", - "G9787A", - "C9791T", - "G9974A", - "C10606T", - "A10711T", - "C10846T", - "C10939T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C7208T", - "C9397T", - "T11386C", - "T11409C", - "T11414C", - "C11418T" - ] - }, - "labels": { - "GRI Lineage Root": "A.7" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: S21T, A497R; nsP2: A16D; nsP3: T260S" - }, - "mutations": { - "nsP1": [ - "S21T", - "A497R" - ], - "nsP2": [ - "A16D" - ], - "nsP3": [ - "T260S" - ], - "nuc": [ - "G106C", - "C107G", - "G1533C", - "C1534G", - "C1696A", - "A4809T" - ] - } - }, - "name": "J04332.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W.", - "value": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W." - }, - "country": { - "confidence": { - "Colombia": 0.14425757934332467, - "Ecuador": 0.055637847248429524, - "Panama": 0.06056274281933376, - "Peru": 0.2213069315140419 - }, - "entropy": 2.4767394884329015, - "value": "Peru" - }, - "div": 0.23434797588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1989.0698630136985, - 1989.0698630136985 - ], - "value": 1989.0698630136985 - }, - "region": { - "confidence": { - "?": 0.01768486832452348, - "AUSNZ": 0.04188969854772781, - "LA,C": 0.9404254331277488 - }, - "entropy": 0.2620270185959693, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1989": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1989" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.7" - }, - "GRI Lineage Level 2": { - "value": "A.7" - }, - "GRI Lineage Level 3": { - "value": "A.7" - }, - "GRI Lineage Level 4": { - "value": "A.7" - }, - "GRI Lineage Level 5": { - "value": "A.7" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "L01442.2", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Johnson,B.J., Brown,V.L. and Trent,D.W.", - "value": "Kinney,R.M., Johnson,B.J., Brown,V.L. and Trent,D.W." - }, - "country": { - "confidence": { - "Australia": 0.01780569771386583, - "Colombia": 0.2884138012696835, - "Panama": 0.016483531337700752, - "Peru": 0.5720368868224519 - }, - "entropy": 1.2956664566142853, - "value": "Peru" - }, - "div": 0.23382419588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1943.202551797086, - 1943.9986301369863 - ], - "value": 1943.9986301369863 - }, - "region": { - "confidence": { - "?": 0.0019063945278804985, - "AUSNZ": 0.0046466618138714605, - "LA,C": 0.993446943658248 - }, - "entropy": 0.0434304503008113, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1943": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1943" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.7" - }, - "GRI Lineage Level 2": { - "value": "A.7" - }, - "GRI Lineage Level 3": { - "value": "A.7" - }, - "GRI Lineage Level 4": { - "value": "A.7" - }, - "GRI Lineage Level 5": { - "value": "A.7" - } - } - } - ], - "name": "NODE_0000044", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.017506279383952116, - "Colombia": 0.2894770479712449, - "Panama": 0.016087303844093764, - "Peru": 0.5747226202126766 - }, - "entropy": 1.2816981548125417, - "value": "Peru" - }, - "div": 0.23382419588190187, - "num_date": { - "confidence": [ - 1943.144023348695, - 1943.997829139726 - ], - "value": 1943.9337493589042 - }, - "region": { - "confidence": { - "?": 0.0018330744545413248, - "AUSNZ": 0.004468541660796507, - "LA,C": 0.9936983838846621 - }, - "entropy": 0.0420112234958156, - "value": "LA,C" - }, - "year": { - "confidence": { - "1938": 0.01134349285103268, - "1942": 0.0022940916156237415, - "1943": 0.9022873108087164, - "1989": 0.002694422302961193 - }, - "entropy": 0.6855558767452586, - "value": "1943" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.7" - }, - "GRI Lineage Level 2": { - "value": "A.7" - }, - "GRI Lineage Level 3": { - "value": "A.7" - }, - "GRI Lineage Level 4": { - "value": "A.7" - }, - "GRI Lineage Level 5": { - "value": "A.7" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T11408C", - "T11413C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344516.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.010373624204937522, - "Colombia": 0.3194287620173791, - "Panama": 0.005976577591109873, - "Peru": 0.6382946206351956 - }, - "entropy": 0.8821386093194474, - "value": "Peru" - }, - "div": 0.23360149588190185, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 1938.101095890411, - 1938.9986301369863 - ], - "value": 1938.9986301369863 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1938": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1938" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: R222C", - "GRI Lineage Root": "A.1" - }, - "mutations": { - "nsP1": [ - "R222C" - ], - "nuc": [ - "C708T", - "A4151G", - "A7034G", - "A10453G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: L161I; E2: K7N, H85Y, T120R, V192D, T296I; nsP1: C222R; nsP2: A16D" - }, - "mutations": { - "E1": [ - "L161I" - ], - "E2": [ - "K7N", - "H85Y", - "T120R", - "V192D", - "T296I" - ], - "nsP1": [ - "C222R" - ], - "nsP2": [ - "A16D" - ], - "nuc": [ - "G3A", - "T708C", - "C1696A", - "G4151A", - "G7034A", - "G8584T", - "C8816T", - "C8922G", - "T9138A", - "C9450T", - "G10453A", - "T10481A", - "A10633T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: H401L, P403Q, V406A, S407A, S408N, S409Q, W411T, S412A" - }, - "mutations": { - "nsP3": [ - "H401L", - "P403Q", - "V406A", - "S407A", - "S408N", - "S409Q", - "W411T", - "S412A" - ], - "nuc": [ - "T5231A", - "A5233T", - "C5239A", - "C5243A", - "T5246G", - "T5248C", - "T5250G", - "T5252G", - "G5254A", - "T5256C", - "C5257A", - "T5262A", - "G5263C", - "G5264A", - "T5265G", - "T5276C" - ] - } - }, - "name": "KJ410017.1", - "node_attrs": { - "author": { - "author": "Medina,G., Garzaro,D.J., Barrios,M., Auguste,A.J., Weaver,S.C. and Pujol,F.H.", - "value": "Medina,G., Garzaro,D.J., Barrios,M., Auguste,A.J., Weaver,S.C. and Pujol,F.H." - }, - "country": { - "confidence": { - "Australia": 0.07426328418829192, - "Colombia": 0.5044105833591042, - "Peru": 0.042635038405964075, - "USA": 0.23219883023406812 - }, - "entropy": 1.6282042992085435, - "value": "Colombia" - }, - "div": 0.23578520588190185, - "host": { - "value": "hamster" - }, - "num_date": { - "confidence": [ - 1981.1140898319218, - 1981.9986301369863 - ], - "value": 1981.9986301369863 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1981": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C7208T", - "T11386C" - ] - }, - "labels": { - "GRI Lineage Root": "A.1.1" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "L01443.1", - "node_attrs": { - "author": { - "author": "Johnson,B.J., Kinney,R.M., Kost,C.L. and Trent,D.W.", - "value": "Johnson,B.J., Kinney,R.M., Kost,C.L. and Trent,D.W." - }, - "country": { - "confidence": { - "Australia": 0.06418833161178493, - "Colombia": 0.3916004813969005, - "Peru": 0.04198741806483667, - "USA": 0.337550271877942 - }, - "entropy": 1.7172986059026867, - "value": "Colombia" - }, - "div": 0.23456358588190185, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1978.8585665475111, - 2000.4526421008754 - ], - "value": 1983.5701594078282 - }, - "region": { - "confidence": { - "?": 0.0023095840747616985, - "AUSNZ": 0.005628681299768753, - "LA,C": 0.9920617346254696 - }, - "entropy": 0.05108333176757568, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "XXXX": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "XXXX" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.1" - }, - "GRI Lineage Level 3": { - "value": "A.1.1" - }, - "GRI Lineage Level 4": { - "value": "A.1.1" - }, - "GRI Lineage Level 5": { - "value": "A.1.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: E523G", - "GRI Lineage Root": "A.1.1.0" - }, - "mutations": { - "nsP1": [ - "E523G" - ], - "nuc": [ - "C401G", - "A1612G", - "C1616A", - "T1619C", - "C8032A", - "T9760G", - "A10900G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "MZ399799.1", - "node_attrs": { - "author": { - "author": "Haese,N.N., May,N.A., Taft-Benz,S., Moukha-Chafiq,O., Madadi,N., Zhang,S., Karyakarte,S.D., Rodzinak,K.J., Nguyen,T.H., Denton,M., Streblow,A.D., Towers,N.A., Rasmussen,L., Bostwick,R.J., Maddry,J.A., Ananthan,S., Augelli-Szafran,C.E., Suto,M.J., Sanders,W., Moorman,N., DeFilippis,V., Heise,M.T., Pathak,A.K., Streblow,D.N. and Morrison,T.E.", - "value": "Haese,N.N., May,N.A., Taft-Benz,S., Moukha-Chafiq,O., Madadi,N., Zhang,S., Karyakarte,S.D., Rodzinak,K.J., Nguyen,T.H., Denton,M., Streblow,A.D., Towers,N.A., Rasmussen,L., Bostwick,R.J., Maddry,J.A., Ananthan,S., Augelli-Szafran,C.E., Suto,M.J., Sanders,W., Moorman,N., DeFilippis,V., Heise,M.T., Pathak,A.K., Streblow,D.N. and Morrison,T.E." - }, - "country": { - "confidence": { - "USA": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "USA" - }, - "div": 0.23517488588190189, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2017.464383561644, - 2017.464383561644 - ], - "value": 2017.464383561644 - }, - "place_of_collection": { - "value": "USA" - }, - "region": { - "confidence": { - "?": 0.012936240531307382, - "AUSNZ": 0.030912026062967855, - "LA,C": 0.9561517334057249 - }, - "entropy": 0.20658480706651844, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2017": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2017" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.1" - }, - "GRI Lineage Level 3": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "MZ399798.1", - "node_attrs": { - "author": { - "author": "Haese,N.N., May,N.A., Taft-Benz,S., Moukha-Chafiq,O., Madadi,N., Zhang,S., Karyakarte,S.D., Rodzinak,K.J., Nguyen,T.H., Denton,M., Streblow,A.D., Towers,N.A., Rasmussen,L., Bostwick,R.J., Maddry,J.A., Ananthan,S., Augelli-Szafran,C.E., Suto,M.J., Sanders,W., Moorman,N., DeFilippis,V., Heise,M.T., Pathak,A.K., Streblow,D.N. and Morrison,T.E.", - "value": "Haese,N.N., May,N.A., Taft-Benz,S., Moukha-Chafiq,O., Madadi,N., Zhang,S., Karyakarte,S.D., Rodzinak,K.J., Nguyen,T.H., Denton,M., Streblow,A.D., Towers,N.A., Rasmussen,L., Bostwick,R.J., Maddry,J.A., Ananthan,S., Augelli-Szafran,C.E., Suto,M.J., Sanders,W., Moorman,N., DeFilippis,V., Heise,M.T., Pathak,A.K., Streblow,D.N. and Morrison,T.E." - }, - "country": { - "confidence": { - "USA": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "USA" - }, - "div": 0.23517477588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2017.464383561644, - 2017.464383561644 - ], - "value": 2017.464383561644 - }, - "place_of_collection": { - "value": "USA" - }, - "region": { - "confidence": { - "?": 0.012936240531307382, - "AUSNZ": 0.030912026062967855, - "LA,C": 0.9561517334057249 - }, - "entropy": 0.20658480706651844, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2017": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "2017" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.1" - }, - "GRI Lineage Level 3": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.1.0" - } - } - } - ], - "name": "NODE_0000050", - "node_attrs": { - "country": { - "confidence": { - "USA": 0.9999977775095881 - }, - "entropy": 0.00003527294019232556, - "value": "USA" - }, - "div": 0.23517253588190187, - "num_date": { - "confidence": [ - 2017.4225280160833, - 2017.464383561644 - ], - "value": 2017.4629741739946 - }, - "region": { - "confidence": { - "?": 0.012867166511410193, - "AUSNZ": 0.030750854981744454, - "LA,C": 0.9563819785068454 - }, - "entropy": 0.205733853928834, - "value": "LA,C" - }, - "year": { - "confidence": { - "2017": 0.9997411665889852 - }, - "entropy": 0.003387686029797966, - "value": "2017" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.1" - }, - "GRI Lineage Level 3": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.1.0" - } - } - } - ], - "name": "NODE_0000049", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.06407635200747262, - "Colombia": 0.39365167648065796, - "Peru": 0.041630364397539914, - "USA": 0.3386962461103129 - }, - "entropy": 1.7077828983632768, - "value": "Colombia" - }, - "div": 0.23456076588190186, - "num_date": { - "confidence": [ - 1982.4032902093827, - 1999.880822323454 - ], - "value": 1987.567017673806 - }, - "region": { - "confidence": { - "?": 0.002236418080818537, - "AUSNZ": 0.00545119505254777, - "LA,C": 0.9923123868666336 - }, - "entropy": 0.049717772867699205, - "value": "LA,C" - }, - "year": { - "confidence": { - "1981": 0.007229161680877632, - "1997": 0.002174805544663539, - "2017": 0.0028643797492738077, - "XXXX": 0.9028496959043073 - }, - "entropy": 0.688554447157697, - "value": "XXXX" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.1" - }, - "GRI Lineage Level 3": { - "value": "A.1.1" - }, - "GRI Lineage Level 4": { - "value": "A.1.1" - }, - "GRI Lineage Level 5": { - "value": "A.1.1" - } - } - } - ], - "name": "NODE_0000048", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.07402772179412888, - "Colombia": 0.5114729261989854, - "Peru": 0.041535412580516344, - "USA": 0.23378798239896054 - }, - "entropy": 1.6001167652055066, - "value": "Colombia" - }, - "div": 0.23436930588190186, - "num_date": { - "confidence": [ - 1980.737309844985, - 1981.8058150042452 - ], - "value": 1981.498208962937 - }, - "region": { - "confidence": { - "LA,C": 0.9999863697447824 - }, - "entropy": 0.0001734051235110461, - "value": "LA,C" - }, - "year": { - "confidence": { - "1981": 0.7633278366097144, - "1983": 0.008145698846853134, - "1997": 0.007682131712580283, - "XXXX": 0.019892408124973456 - }, - "entropy": 1.442791371725324, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: F253S; E2: N239I, E323G; nsP1: C222R" - }, - "mutations": { - "E1": [ - "F253S" - ], - "E2": [ - "N239I", - "E323G" - ], - "nsP1": [ - "C222R" - ], - "nuc": [ - "T708C", - "T6044C", - "G7034A", - "G9073A", - "A9279T", - "C9487T", - "A9531G", - "G10453A", - "T10758C" - ] - } - }, - "name": "AY741139.1", - "node_attrs": { - "author": { - "author": "Davis,N., Johnston,R.E., Smith,J.F., Crise,B. and Parker,M.D.", - "value": "Davis,N., Johnston,R.E., Smith,J.F., Crise,B. and Parker,M.D." - }, - "country": { - "confidence": { - "USA": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "USA" - }, - "div": 0.23421113588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2004.6707650273224, - 2004.6707650273224 - ], - "value": 2004.6707650273224 - }, - "place_of_collection": { - "value": "USA" - }, - "region": { - "confidence": { - "?": 0.013127163729794049, - "AUSNZ": 0.03135599595673253, - "LA,C": 0.9555168403134734 - }, - "entropy": 0.208925144645015, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2004": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2004" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C4709A", - "C7241T" - ] - } - }, - "name": "KR260736.1", - "node_attrs": { - "author": { - "author": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Forrester,N.L., Auguste,A.J., Guerbois,M., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Australia" - }, - "div": 0.23412228588190184, - "host": { - "value": "Equus ferus" - }, - "num_date": { - "confidence": [ - 1967.9764695784804, - 1967.9986301369863 - ], - "value": 1967.9986301369863 - }, - "place_of_collection": { - "value": "Australia" - }, - "region": { - "confidence": { - "AUSNZ": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "AUSNZ" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344485.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23395080588190187, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 1967.9626952802282, - 1967.9986301369863 - ], - "value": 1967.988216438085 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1967": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - }, - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "A.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2024T", - "C3752T", - "A5471G", - "C6272T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: V39M; CP: A56E, G77R; E2: T120K; nsP2: V745A; nsP3: L427F, T429N, S518N" - }, - "mutations": { - "6k": [ - "V39M" - ], - "CP": [ - "A56E", - "G77R" - ], - "E2": [ - "T120K" - ], - "nsP2": [ - "V745A" - ], - "nsP3": [ - "L427F", - "T429N", - "S518N" - ], - "nuc": [ - "A1C", - "T2C", - "G3A", - "A25T", - "T95G", - "C752T", - "C1625T", - "C1793T", - "T2369C", - "T2504C", - "T2825C", - "C2922T", - "G3107A", - "T3470A", - "T3883C", - "C4838T", - "C5310T", - "C5317A", - "G5584A", - "G6353A", - "C7037A", - "C7214T", - "A7560T", - "C7728A", - "G7790A", - "G7801A", - "A8443G", - "T8839C", - "C8922A", - "G9142T", - "A9226G", - "A9616C", - "G9947A", - "C10240T", - "T10507A", - "A10582G", - "C10690T", - "T10798C", - "T11388C", - "T11403A" - ] - } - }, - "name": "KU978806.1", - "node_attrs": { - "author": { - "author": "Guerbois,M., Forrester,N.L., Guzman,H., Tesh,R.B., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Guerbois,M., Forrester,N.L., Guzman,H., Tesh,R.B., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.06637196327826786, - "Colombia": 0.5400217672604049, - "Guatemala": 0.20782538179212492, - "Peru": 0.08066711972189272 - }, - "entropy": 1.5193405585975386, - "value": "Colombia" - }, - "div": 0.23780219588190185, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1973.817808219178, - 1973.817808219178 - ], - "value": 1973.817808219178 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1973": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E3: R58K", - "GRI Lineage Root": "A.1.0.2" - }, - "mutations": { - "E3": [ - "R58K" - ], - "nuc": [ - "G5240A", - "C6293T", - "G7813A", - "G8559A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP4: K593N" - }, - "mutations": { - "nsP4": [ - "K593N" - ], - "nuc": [ - "A7481T" - ] - } - }, - "name": "KU059754.1", - "node_attrs": { - "author": { - "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R.B., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Tesh,R.B., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.06277172964323856, - "Colombia": 0.6162848396706313, - "Guatemala": 0.2271230624949563, - "Peru": 0.07339219126302941 - }, - "entropy": 1.1257951725964097, - "value": "Colombia" - }, - "div": 0.23473556588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1968.8210382513662, - 1968.8210382513662 - ], - "value": 1968.8210382513662 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1968": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1968" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.2" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: Q86K; E2: F278L, A384V; nsP4: S579T" - }, - "mutations": { - "CP": [ - "Q86K" - ], - "E2": [ - "F278L", - "A384V" - ], - "nsP4": [ - "S579T" - ], - "nuc": [ - "A1G", - "T2C", - "C458T", - "C3119T", - "G5237T", - "C7148T", - "T7437A", - "C7817A", - "C9397A", - "C9714T", - "A9790G" - ] - } - }, - "name": "KU059755.1", - "node_attrs": { - "author": { - "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.06344350430618907, - "Colombia": 0.6025475149891477, - "Guatemala": 0.22368546653429716, - "Peru": 0.07478221993941316 - }, - "entropy": 1.2083654795266825, - "value": "Colombia" - }, - "div": 0.23560886588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1969.8013698630136, - 1969.8013698630136 - ], - "value": 1969.8013698630136 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1969": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.2" - } - } - } - ], - "name": "NODE_0000057", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.06259645915077286, - "Colombia": 0.619837309069232, - "Guatemala": 0.22800942157406923, - "Peru": 0.07302738278086478 - }, - "entropy": 1.1027809759015437, - "value": "Colombia" - }, - "div": 0.23464809588190186, - "num_date": { - "confidence": [ - 1968.795796102068, - 1968.8205089467992 - ], - "value": 1968.8152233956255 - }, - "region": { - "confidence": { - "LA,C": 0.999999999871609 - }, - "entropy": 3.104310319109639e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.053221954724389536, - "1968": 0.302855988289281, - "1969": 0.6307929458404874, - "1973": 0.0026265551381196386 - }, - "entropy": 0.9096396363903535, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.2" - } - } - } - ], - "name": "NODE_0000056", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.06241938821581642, - "Colombia": 0.6234134613556224, - "Guatemala": 0.22890062456271243, - "Peru": 0.07265795701465684 - }, - "entropy": 1.078603347874914, - "value": "Colombia" - }, - "div": 0.23429868588190186, - "num_date": { - "confidence": [ - 1968.7255550227908, - 1968.8011913653334 - ], - "value": 1968.7690491172552 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993331373 - }, - "entropy": 1.5035230689832826e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.10496893142679974, - "1968": 0.2324756861812313, - "1969": 0.6373036545657722, - "1973": 0.005276524347427541 - }, - "entropy": 1.0401364584602424, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T533C", - "C5201T", - "C7154T", - "T8437C", - "T9796C", - "T11407C", - "C11408T", - "T11412C", - "C11413T", - "T11417C" - ] - }, - "labels": { - "GRI Lineage Root": "A.1.0.1" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: V134A" - }, - "mutations": { - "E2": [ - "V134A" - ], - "nuc": [ - "C29T", - "T3656C", - "T8964C" - ] - } - }, - "name": "KC344505.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Guatemala": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Guatemala" - }, - "div": 0.23508581588190183, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1969.9304517568803, - 1969.9986301369863 - ], - "value": 1969.9986301369863 - }, - "place_of_collection": { - "value": "Guatemala" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1969": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "6k: A52V; E1: M433V; E2: T205K, K213R" - }, - "mutations": { - "6k": [ - "A52V" - ], - "E1": [ - "M433V" - ], - "E2": [ - "T205K", - "K213R" - ], - "nuc": [ - "C1394T", - "C2609T", - "T2849C", - "A3890G", - "T4373C", - "T6143C", - "T7448C", - "C7771T", - "T7849C", - "C9177A", - "A9201G", - "C9559T", - "G9568A", - "C9987T", - "T10354C", - "G10549A", - "G10714T", - "C11200T", - "A11297G" - ] - } - }, - "name": "AF069903.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W.", - "value": "Kinney,R.M., Johnson,B.J., Welch,J.B., Tsuchiya,K.R. and Trent,D.W." - }, - "country": { - "confidence": { - "Australia": 0.008252776602165928, - "Colombia": 0.13091354915600342, - "Guatemala": 0.7615806932873231, - "Peru": 0.07455383475320453 - }, - "entropy": 0.8541083744754584, - "value": "Guatemala" - }, - "div": 0.23648515588190183, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1971.0013698630137, - 1971.1726010254117 - ], - "value": 1971.0013698630137 - }, - "region": { - "confidence": { - "LA,C": 0.9986575550464764 - }, - "entropy": 0.011028272506834717, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1971": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.1" - } - } - } - ], - "name": "NODE_0000059", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.006633347864087979, - "Colombia": 0.13273091905256906, - "Guatemala": 0.782619029636528, - "Peru": 0.07423820073989744 - }, - "entropy": 0.7146551377218511, - "value": "Guatemala" - }, - "div": 0.23482324588190184, - "num_date": { - "confidence": [ - 1969.87628163544, - 1969.9865857915995 - ], - "value": 1969.9473528687447 - }, - "region": { - "confidence": { - "LA,C": 0.9999999157604076 - }, - "entropy": 0.0000014999364436015117, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.011791117507159998, - "1968": 0.017304714568353575, - "1969": 0.9127404459296985, - "1971": 0.03759443729213288 - }, - "entropy": 0.47639178544380967, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: L415F; nsP2: T122I; nsP3: T13M, P342L, R365W, V493A", - "GRI Lineage Root": "A.1.0.0" - }, - "mutations": { - "E2": [ - "L415F" - ], - "nsP2": [ - "T122I" - ], - "nsP3": [ - "T13M", - "P342L", - "R365W", - "V493A" - ], - "nuc": [ - "T467C", - "C692T", - "T1194C", - "T1847C", - "C1956T", - "C2014T", - "G2306A", - "C2690T", - "C3527T", - "C4069T", - "T4373C", - "C5056T", - "A5124T", - "T5509C", - "A6515T", - "T6833C", - "G7349A", - "T8200C", - "T8320C", - "A8923C", - "C9806T", - "C11086T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: M10T; E1: S275L; E3: K52M; nsP2: V147A, N782S; nsP3: I270T, T333I, S407F, V499A, P513Q, D554E; nsP4: H11Q, E46A" - }, - "mutations": { - "CP": [ - "M10T" - ], - "E1": [ - "S275L" - ], - "E3": [ - "K52M" - ], - "nsP2": [ - "V147A", - "N782S" - ], - "nsP3": [ - "I270T", - "T333I", - "S407F", - "V499A", - "P513Q", - "D554E" - ], - "nsP4": [ - "H11Q", - "E46A" - ], - "nuc": [ - "T266C", - "T657C", - "C807T", - "T2089C", - "C2252T", - "C3086A", - "G3305A", - "A3994G", - "G4151A", - "G4679A", - "T4840C", - "G4952A", - "C5029T", - "C5251T", - "G5453A", - "T5527C", - "C5569A", - "T5657C", - "T5693G", - "T5735A", - "A5839C", - "C6732T", - "A6974G", - "A7253C", - "T7478C", - "T7590C", - "A8002G", - "T8536C", - "T8539A", - "A8541T", - "C8815A", - "C8836T", - "T8962A", - "C9850T", - "C10824T", - "C10984T" - ] - } - }, - "name": "KC344517.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Ecuador": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Ecuador" - }, - "div": 0.23904063588190186, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1977.0013698630137, - 1977.898904109589 - ], - "value": 1977.0013698630137 - }, - "place_of_collection": { - "value": "Ecuador" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1977": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A810C", - "C2850T", - "T6368C", - "A7559G", - "T8122C" - ] - }, - "labels": { - "GRI Lineage Root": "A.1.0.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: M433I; E2: S218N; nsP1: G463R" - }, - "mutations": { - "E1": [ - "M433I" - ], - "E2": [ - "S218N" - ], - "nsP1": [ - "G463R" - ], - "nuc": [ - "C1394T", - "G1431A", - "C1949T", - "A2066G", - "C8038T", - "T8695C", - "G9216A", - "C10468T", - "G11299A" - ] - } - }, - "name": "KU059756.1", - "node_attrs": { - "author": { - "author": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C.", - "value": "Guerbois,M., Forrester,N.L., Rossi,S.L., Lin,D., Hari,K. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Peru" - }, - "div": 0.23709752588190186, - "host": { - "value": "Equus africanus asinus" - }, - "num_date": { - "confidence": [ - 1973.0013698630137, - 1973.9986301369863 - ], - "value": 1973.2160288875702 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1973": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: T153I" - }, - "mutations": { - "nsP2": [ - "T153I" - ], - "nuc": [ - "C2107T" - ] - } - }, - "name": "KC344483.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23639824588190186, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 1973.0013698630137, - 1973.5524149701798 - ], - "value": 1973.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IAB" - }, - "year": { - "confidence": { - "1973": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.0.0" - } - } - } - ], - "name": "NODE_0000061", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.999956339081101 - }, - "entropy": 0.0005326438483081602, - "value": "Peru" - }, - "div": 0.23631088588190186, - "num_date": { - "confidence": [ - 1972.808732989194, - 1973.5437480423384 - ], - "value": 1973.0002280240046 - }, - "region": { - "confidence": { - "LA,C": 0.999999999969157 - }, - "entropy": 7.873405922378091e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.9995735816074588 - }, - "entropy": 0.004983293337691475, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.0.0" - } - } - } - ], - "name": "NODE_0000060", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.018385962721530005, - "Ecuador": 0.027699046557080928, - "Guatemala": 0.022799146068101593, - "Peru": 0.9289926159277382 - }, - "entropy": 0.34498500206731214, - "value": "Peru" - }, - "div": 0.23587653588190186, - "num_date": { - "confidence": [ - 1972.736894295944, - 1973.4438810325018 - ], - "value": 1972.938242158648 - }, - "region": { - "confidence": { - "LA,C": 0.9999999916252283 - }, - "entropy": 1.677047333841891e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1969": 0.023603023707210513, - "1972": 0.00366608324078784, - "1973": 0.894083422778653, - "1977": 0.015074764356594248 - }, - "entropy": 0.6870579927800965, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0.0" - } - } - } - ], - "name": "NODE_0000179", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.013318357033853607, - "Colombia": 0.26946755173877973, - "Guatemala": 0.5606051728866255, - "Peru": 0.15048094363715023 - }, - "entropy": 1.0625810031504848, - "value": "Guatemala" - }, - "div": 0.23394840588190186, - "num_date": { - "confidence": [ - 1969.6169799371332, - 1969.8506623410678 - ], - "value": 1969.7421920756765 - }, - "region": { - "confidence": { - "LA,C": 0.9999999956255116 - }, - "entropy": 9.043610755815108e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.028029927018023242, - "1968": 0.03407964825685136, - "1969": 0.8625483623451418, - "1971": 0.030860657628684018 - }, - "entropy": 0.7297689093847979, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0" - } - } - } - ], - "name": "NODE_0000176", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.062240501967109715, - "Colombia": 0.6270134565651324, - "Guatemala": 0.22979669772552752, - "Peru": 0.07228387109416334 - }, - "entropy": 1.052856642704099, - "value": "Colombia" - }, - "div": 0.23394840588190186, - "num_date": { - "confidence": [ - 1968.601604505248, - 1968.7540763168925 - ], - "value": 1968.695947820887 - }, - "region": { - "confidence": { - "LA,C": 0.9999999982893361 - }, - "entropy": 3.654716328431038e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.16102952807898727, - "1968": 0.16840038361635556, - "1969": 0.6431316878768701, - "1973": 0.005026901817827786 - }, - "entropy": 1.0675145638976107, - "value": "1969" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1.0" - }, - "GRI Lineage Level 3": { - "value": "A.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.1.0" - } - } - } - ], - "name": "NODE_0000053", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.09577847619914223, - "Colombia": 0.8784369640811797, - "Guatemala": 0.006240745796238158, - "Peru": 0.016993333686260263 - }, - "entropy": 0.4558631564342198, - "value": "Colombia" - }, - "div": 0.23394840588190186, - "num_date": { - "confidence": [ - 1967.946777021534, - 1967.996841768476 - ], - "value": 1967.975668215525 - }, - "region": { - "confidence": { - "LA,C": 0.9999976095440851 - }, - "entropy": 0.000033333371819117014, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.9988559866840461 - }, - "entropy": 0.010510182900205233, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - } - ], - "name": "NODE_0000052", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.09252890696468112, - "Colombia": 0.8675255290656017, - "Peru": 0.019164711325233227, - "USA": 0.013626252627991458 - }, - "entropy": 0.5183073039160476, - "value": "Colombia" - }, - "div": 0.23368630588190187, - "num_date": { - "confidence": [ - 1967.8973173119757, - 1967.9783378400864 - ], - "value": 1967.9450389863414 - }, - "region": { - "confidence": { - "LA,C": 0.9999977049911877 - }, - "entropy": 0.000032364860153776476, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.8870853917732555, - "1968": 0.006136589899325028, - "1969": 0.004590787137761849, - "1970": 0.0036455569954927836 - }, - "entropy": 0.7831011500812837, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - } - ], - "name": "NODE_0000170", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.09168791615754958, - "Colombia": 0.8629861085882512, - "Peru": 0.022167046525810186, - "USA": 0.014850603673210066 - }, - "entropy": 0.5421944590720282, - "value": "Colombia" - }, - "div": 0.23359915588190186, - "num_date": { - "confidence": [ - 1967.8430057211283, - 1967.9682661901575 - ], - "value": 1967.915915475018 - }, - "region": { - "confidence": { - "LA,C": 0.9999979603862316 - }, - "entropy": 0.000029105603967051867, - "value": "LA,C" - }, - "year": { - "confidence": { - "1967": 0.7880923522990744, - "1968": 0.010926526675493198, - "1969": 0.007865877268055535, - "1970": 0.006732572856882086 - }, - "entropy": 1.3257618506177011, - "value": "1967" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.1" - }, - "GRI Lineage Level 2": { - "value": "A.1" - }, - "GRI Lineage Level 3": { - "value": "A.1" - }, - "GRI Lineage Level 4": { - "value": "A.1" - }, - "GRI Lineage Level 5": { - "value": "A.1" - } - } - } - ], - "name": "NODE_0000047", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.010030113636472042, - "Colombia": 0.32065260973867504, - "Panama": 0.005507449754000562, - "Peru": 0.641332275929857 - }, - "entropy": 0.8600332337801032, - "value": "Peru" - }, - "div": 0.23359915588190186, - "num_date": { - "confidence": [ - 1938.9682038594049, - 1938.997829139726 - ], - "value": 1938.9914211616438 - }, - "region": { - "confidence": { - "LA,C": 0.9999999765111535 - }, - "entropy": 4.458732295010507e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.0022218214640672535, - "1938": 0.9033672963085594, - "1942": 0.009821820486715462, - "1943": 0.010854527226071163 - }, - "entropy": 0.6710652343955629, - "value": "1938" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000043", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.009476829620298065, - "Colombia": 0.3176756183943257, - "Panama": 0.005301626435895918, - "Peru": 0.6463731107253612 - }, - "entropy": 0.8472660476764475, - "value": "Peru" - }, - "div": 0.23336247588190187, - "num_date": { - "confidence": [ - 1938.9169757758605, - 1938.9893942371561 - ], - "value": 1938.9584699990578 - }, - "region": { - "confidence": { - "LA,C": 0.9999995558202152 - }, - "entropy": 0.000007162110626274608, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.004119515514859055, - "1938": 0.8161662462958983, - "1942": 0.019530161646436048, - "1943": 0.021810702965676627 - }, - "entropy": 1.1458658514422, - "value": "1938" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000041", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.007196103055078609, - "Colombia": 0.30546179434023657, - "Panama": 0.004419400218734814, - "Peru": 0.6673175119038721 - }, - "entropy": 0.7912807801552402, - "value": "Peru" - }, - "div": 0.22937926588190188, - "num_date": { - "confidence": [ - 1937.9103666519259, - 1938.3405454186548 - ], - "value": 1938.1342723696498 - }, - "region": { - "confidence": { - "LA,C": 0.9999995104705728 - }, - "entropy": 0.000007813174926948253, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.01037938874400672, - "1938": 0.5347912869448256, - "1942": 0.0659034895027205, - "1943": 0.022860976985327755 - }, - "entropy": 2.4005997550682134, - "value": "1938" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: N102S; nsP2: R654Q; nsP3: T360N" - }, - "mutations": { - "CP": [ - "N102S" - ], - "nsP2": [ - "R654Q" - ], - "nsP3": [ - "T360N" - ], - "nuc": [ - "C353T", - "A1568C", - "A2213G", - "C2933T", - "C3056T", - "A3095G", - "C3552T", - "G3610A", - "C3752T", - "G4580A", - "A4754T", - "G4868A", - "C5110A", - "A5573C", - "G6107A", - "A6200G", - "A6656G", - "T6884A", - "T6932A", - "G7124T", - "C7373T", - "C7609T", - "A7866G", - "T8017C", - "A8146G", - "T8350A", - "C8752A", - "A9028G", - "A9535G", - "G9619A", - "C9958A", - "A10075G", - "A11251G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: T108P; E1: Y72N; E2: D117G, V179I, A192V, E201K, T213K; E3: Q18E; nsP1: V517F; nsP2: T647K, I677V, L752H; nsP3: A61V, A62T, P342S, T368M, P403S, E431D, L455R, P483H" - }, - "mutations": { - "CP": [ - "T108P" - ], - "E1": [ - "Y72N" - ], - "E2": [ - "D117G", - "V179I", - "A192V", - "E201K", - "T213K" - ], - "E3": [ - "Q18E" - ], - "nsP1": [ - "V517F" - ], - "nsP2": [ - "T647K", - "I677V", - "L752H" - ], - "nsP3": [ - "A61V", - "A62T", - "P342S", - "T368M", - "P403S", - "E431D", - "L455R", - "P483H" - ], - "nuc": [ - "G98A", - "T422A", - "C458T", - "G464A", - "T695C", - "T1116C", - "T1422C", - "A1442G", - "A1511G", - "G1541A", - "T1560C", - "C1568T", - "G1593T", - "T1922C", - "G2069A", - "C2085T", - "C2141T", - "A2165T", - "A2216G", - "C2498T", - "T2594C", - "A2633G", - "A2696G", - "C2930T", - "T2972C", - "T3158C", - "C3321T", - "T3341C", - "T3386C", - "A3416G", - "C3589A", - "T3593C", - "C3626T", - "C3677T", - "A3678G", - "T3689C", - "C3780T", - "A3839G", - "T3904A", - "T3920A", - "T4100C", - "C4213T", - "G4215A", - "C4226T", - "T4274G", - "C4535A", - "T4709A", - "A4778G", - "A4793G", - "C5055T", - "C5134T", - "C5238T", - "T5300C", - "G5324T", - "T5369C", - "T5395G", - "A5423C", - "T5450A", - "C5479A", - "A5828G", - "C5915T", - "C6077T", - "C6095T", - "T6113C", - "T6230C", - "C6635T", - "G6650A", - "A6683G", - "T6800A", - "T6878C", - "T7184C", - "C7214T", - "T7304C", - "C7747T", - "G7759T", - "T7834C", - "A7883C", - "C8243A", - "C8401T", - "C8438G", - "C8476T", - "C8758T", - "C8770T", - "G8797A", - "A8913G", - "C8989A", - "T9031C", - "G9098A", - "C9138T", - "T9139C", - "C9152T", - "G9164A", - "G9190A", - "C9201A", - "A9268G", - "A9337G", - "C9562T", - "T9802C", - "T10214A", - "C10300T", - "C10303T", - "T10321C", - "C10354T", - "A10414G", - "T10481C", - "C10523A", - "C10525A", - "C10846T", - "T10861C", - "C11366T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E199K" - }, - "mutations": { - "E2": [ - "E199K" - ], - "nuc": [ - "T3620C", - "G9158A" - ] - } - }, - "name": "KC344528.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.06438504290337106, - "Colombia": 0.21592005839636536, - "Panama": 0.06889288247347981, - "Peru": 0.08882120556687098 - }, - "entropy": 2.5231448936784155, - "value": "Colombia" - }, - "div": 0.23045123588190186, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1962.0013698630137, - 1962.9986301369863 - ], - "value": 1962.0553697251692 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1962": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T6182G" - ] - } - }, - "name": "U55342.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Australia": 0.06438504290337106, - "Colombia": 0.21592005839636536, - "Panama": 0.06889288247347981, - "Peru": 0.08882120556687098 - }, - "entropy": 2.5231448936784155, - "value": "Colombia" - }, - "div": 0.23036346588190185, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1962.0013698630137, - 1962.9986301369863 - ], - "value": 1962.0271777287878 - }, - "region": { - "confidence": { - "LA,C": 0.9997445533439815 - }, - "entropy": 0.002522420070132884, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1962": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: S480P; nsP4: A537V" - }, - "mutations": { - "nsP3": [ - "S480P" - ], - "nsP4": [ - "A537V" - ], - "nuc": [ - "A476G", - "C3941T", - "A5453G", - "T5469C", - "C7312T", - "C9622T", - "A10306G" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "G4049A" - ] - } - }, - "name": "U55345.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Colombia": 0.20330619903057676, - "Panama": 0.06938840598922676, - "Peru": 0.08852032082516399, - "USA": 0.06515642409636267 - }, - "entropy": 2.5396663495109006, - "value": "Colombia" - }, - "div": 0.23104102588190184, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1964.4717575077311, - 1964.9986338797814 - ], - "value": 1964.9986338797814 - }, - "region": { - "confidence": { - "LA,C": 0.9996931423590903 - }, - "entropy": 0.0029702075097522156, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1964": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1964" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: A440V" - }, - "mutations": { - "nsP3": [ - "A440V" - ], - "nuc": [ - "T13A", - "T3941C", - "C5350T", - "T7229C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E224V" - }, - "mutations": { - "E2": [ - "E224V" - ], - "nuc": [ - "A9234T" - ] - } - }, - "name": "KC344512.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.17146171855808612, - "Panama": 0.07037374488067048, - "Peru": 0.08708611005079833, - "USA": 0.06708117824867905 - }, - "entropy": 2.5769794588562505, - "value": "Colombia" - }, - "div": 0.23114996588190184, - "host": { - "value": "mosquito" - }, - "num_date": { - "confidence": [ - 1973.1133796621118, - 1973.9986301369863 - ], - "value": 1973.9986301369863 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1973": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E199K; nsP2: E340V, T433I; nsP3: V61A, T62A, E438G; nsP4: Y321D" - }, - "mutations": { - "E2": [ - "E199K" - ], - "nsP2": [ - "E340V", - "T433I" - ], - "nsP3": [ - "V61A", - "T62A", - "E438G" - ], - "nsP4": [ - "Y321D" - ], - "nuc": [ - "A422T", - "A1571T", - "T2051C", - "T2579C", - "A2668T", - "C2947T", - "C4100T", - "G4187A", - "T4213C", - "A4215G", - "T4226C", - "G4241A", - "C4244A", - "A5344G", - "T6663G", - "G9158A" - ] - } - }, - "name": "L04653.1", - "node_attrs": { - "author": { - "author": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W.", - "value": "Kinney,R.M., Tsuchiya,K.R., Sneider,J.M. and Trent,D.W." - }, - "country": { - "confidence": { - "Colombia": 0.1266946373452216, - "Mexico": 0.07203451073117577, - "Panama": 0.07078962331166565, - "Peru": 0.08273811515028673 - }, - "entropy": 2.6170248815403863, - "value": "Colombia" - }, - "div": 0.23246281588190185, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1993.5246575342467, - 1993.5246575342467 - ], - "value": 1993.5246575342467 - }, - "region": { - "confidence": { - "LA,C": 0.9995551003024005 - }, - "entropy": 0.004140214557693566, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1993": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1993" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C3407T" - ] - }, - "labels": { - "GRI Lineage Root": "A.2" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T3407C" - ] - } - }, - "name": "AF375051.1", - "node_attrs": { - "author": { - "author": "Brault,A.C., Powers,A.M., Medina,G., Wang,E., Kang,W., Salas,R.A., De Siger,J. and Weaver,S.C.", - "value": "Brault,A.C., Powers,A.M., Medina,G., Wang,E., Kang,W., Salas,R.A., De Siger,J. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.11531482939429842, - "Mexico": 0.07338909742589424, - "Panama": 0.0705959749579169, - "Peru": 0.0809568688094394 - }, - "entropy": 2.624410994469242, - "value": "Colombia" - }, - "div": 0.23106513588190186, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2001.327397260274, - 2001.327397260274 - ], - "value": 2001.327397260274 - }, - "region": { - "confidence": { - "?": 0.002207463537506007, - "AUSNZ": 0.0053796003024328245, - "LA,C": 0.9924129361600613 - }, - "entropy": 0.049168031032224814, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2001": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2" - }, - "GRI Lineage Level 3": { - "value": "A.2" - }, - "GRI Lineage Level 4": { - "value": "A.2" - }, - "GRI Lineage Level 5": { - "value": "A.2" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "G1442A", - "C4974T", - "T5291C", - "T6497A" - ] - }, - "labels": { - "GRI Lineage Root": "A.2.1" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T740C", - "C2717T", - "T5153C" - ] - } - }, - "name": "KF985959.1", - "node_attrs": { - "author": { - "author": "Das,S., Halpin,R.A., Ransier,A., Mohan,M., Fedorova,N., Tsitrin,T., Puri,V., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Schobel,S., Shrivastava,S., Wang,S., Auguste,A.J., Wentworth,D.E. and Weaver,S.", - "value": "Das,S., Halpin,R.A., Ransier,A., Mohan,M., Fedorova,N., Tsitrin,T., Puri,V., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Schobel,S., Shrivastava,S., Wang,S., Auguste,A.J., Wentworth,D.E. and Weaver,S." - }, - "country": { - "confidence": { - "Colombia": 0.12265872595066107, - "Mexico": 0.07250912078267568, - "Panama": 0.07074039419618926, - "Peru": 0.0821486186033733 - }, - "entropy": 2.6197916601215065, - "value": "Colombia" - }, - "div": 0.23176091588190184, - "host": { - "value": "Anopheles" - }, - "num_date": { - "confidence": [ - 1995.6102402055762, - 1995.818978074584 - ], - "value": 1995.7340087427822 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.1" - }, - "GRI Lineage Level 3": { - "value": "A.2.1" - }, - "GRI Lineage Level 4": { - "value": "A.2.1" - }, - "GRI Lineage Level 5": { - "value": "A.2.1" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "U55350.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Colombia": 0.12265872595066107, - "Mexico": 0.07250912078267568, - "Panama": 0.07074039419618926, - "Peru": 0.0821486186033733 - }, - "entropy": 2.6197916601215065, - "value": "Colombia" - }, - "div": 0.23150100588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1995.7082191780821, - 1995.7082191780821 - ], - "value": 1995.7082191780821 - }, - "region": { - "confidence": { - "LA,C": 0.9997448380641051 - }, - "entropy": 0.0025199335995723174, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.1" - }, - "GRI Lineage Level 3": { - "value": "A.2.1" - }, - "GRI Lineage Level 4": { - "value": "A.2.1" - }, - "GRI Lineage Level 5": { - "value": "A.2.1" - } - } - } - ], - "name": "NODE_0000002", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.12296343673257827, - "Mexico": 0.0724730777351666, - "Panama": 0.0707448056963123, - "Peru": 0.08219464782059407 - }, - "entropy": 2.619588280311464, - "value": "Colombia" - }, - "div": 0.23149865588190185, - "num_date": { - "confidence": [ - 1995.574859441062, - 1995.7082191780821 - ], - "value": 1995.7054004027837 - }, - "region": { - "confidence": { - "LA,C": 0.9999998609794091 - }, - "entropy": 0.000002405770592088518, - "value": "LA,C" - }, - "year": { - "confidence": { - "1995": 0.9999968422932926 - }, - "entropy": 0.00005275263066619717, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.1" - }, - "GRI Lineage Level 3": { - "value": "A.2.1" - }, - "GRI Lineage Level 4": { - "value": "A.2.1" - }, - "GRI Lineage Level 5": { - "value": "A.2.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T5474C" - ] - }, - "labels": { - "GRI Lineage Root": "A.2.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: E3K; nsP1: D446E; nsP2: K11R" - }, - "mutations": { - "E2": [ - "E3K" - ], - "nsP1": [ - "D446E" - ], - "nsP2": [ - "K11R" - ], - "nuc": [ - "T1382A", - "A1681G", - "C1922T", - "C2624T", - "A7993C", - "G8524A", - "G8570A" - ] - } - }, - "name": "KP282671.1", - "node_attrs": { - "author": { - "author": "Yu,G.Y., Wiley,M.R., Kugelman,J.R., Ladner,J.T., Beitzel,B.F., Eccleston,L.T., Morazzani,E.M., Glass,P.J. and Palacios,G.F.", - "value": "Yu,G.Y., Wiley,M.R., Kugelman,J.R., Ladner,J.T., Beitzel,B.F., Eccleston,L.T., Morazzani,E.M., Glass,P.J. and Palacios,G.F." - }, - "country": { - "confidence": { - "Colombia": 0.12287250546900981, - "Mexico": 0.07248382994904347, - "Panama": 0.07074350150214236, - "Peru": 0.08218093865577455 - }, - "entropy": 2.6196490679107574, - "value": "Colombia" - }, - "div": 0.23185021588190183, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1995.4343005653088, - 1995.5962138631605 - ], - "value": 1995.4986603546852 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T1247C", - "C10912T" - ] - } - }, - "name": "U55347.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Colombia": 0.12287250546900981, - "Mexico": 0.07248382994904347, - "Panama": 0.07074350150214236, - "Peru": 0.08218093865577455 - }, - "entropy": 2.6196490679107574, - "value": "Colombia" - }, - "div": 0.23141200588190183, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1995.3931506849315, - 1995.3931506849315 - ], - "value": 1995.3931506849315 - }, - "region": { - "confidence": { - "LA,C": 0.999744976332498 - }, - "entropy": 0.002518715966905105, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1995": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C11236T" - ] - }, - "labels": { - "GRI Lineage Root": "A.2.0.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "AY986475.1", - "node_attrs": { - "author": { - "author": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C.", - "value": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.11614394199789052, - "Mexico": 0.07328860429636362, - "Panama": 0.07061619009876358, - "Peru": 0.08109980363328025 - }, - "entropy": 2.623917255258199, - "value": "Colombia" - }, - "div": 0.23132649588190182, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2000.1379781420765, - 2000.1379781420765 - ], - "value": 2000.1379781420765 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: E199K; nsP4: V208I" - }, - "mutations": { - "E2": [ - "E199K" - ], - "nsP4": [ - "V208I" - ], - "nuc": [ - "G6324A", - "C6347T", - "G9158A" - ] - } - }, - "name": "AY973944.1", - "node_attrs": { - "author": { - "author": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C.", - "value": "Navarro,J.C., Medina,G., Vasquez,C., Coffey,L.L., Wang,E., Suarez,A., Biord,H., Salas,M. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.11559490793384783, - "Mexico": 0.07335511582769708, - "Panama": 0.07060292305504967, - "Peru": 0.08100540670657486 - }, - "entropy": 2.624245016861772, - "value": "Colombia" - }, - "div": 0.23158746588190185, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2000.7581967213114, - 2000.7581967213114 - ], - "value": 2000.7581967213114 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0.0" - } - } - } - ], - "name": "NODE_0000005", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.11640696525342763, - "Mexico": 0.07325678840101718, - "Panama": 0.07062238200728022, - "Peru": 0.08114467691136013 - }, - "entropy": 2.6237591151676245, - "value": "Colombia" - }, - "div": 0.23132446588190184, - "num_date": { - "confidence": [ - 2000.0926052116986, - 2000.1379781420765 - ], - "value": 2000.1365687544271 - }, - "region": { - "confidence": { - "LA,C": 0.9999999980945032 - }, - "entropy": 4.097585290972596e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "2000": 0.9988406949617477 - }, - "entropy": 0.013158656553479768, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0.0" - } - } - } - ], - "name": "NODE_0000003", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.12317858657218209, - "Mexico": 0.07244764968521836, - "Panama": 0.07074785011054185, - "Peru": 0.082226994276173 - }, - "entropy": 2.6194441300420284, - "value": "Colombia" - }, - "div": 0.23123688588190183, - "num_date": { - "confidence": [ - 1995.3603892794445, - 1995.3906481148497 - ], - "value": 1995.3829258021235 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993277366 - }, - "entropy": 1.5150220194035638e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1995": 0.9999962947312522 - }, - "entropy": 0.000059820917011185424, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2.0" - }, - "GRI Lineage Level 3": { - "value": "A.2.0" - }, - "GRI Lineage Level 4": { - "value": "A.2.0" - }, - "GRI Lineage Level 5": { - "value": "A.2.0" - } - } - } - ], - "name": "NODE_0000001", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.12348662989367325, - "Mexico": 0.07241127311717103, - "Panama": 0.07075210821043966, - "Peru": 0.08227308649522318 - }, - "entropy": 2.6192369534666704, - "value": "Colombia" - }, - "div": 0.23114959588190184, - "num_date": { - "confidence": [ - 1995.3284639770382, - 1995.3863453524257 - ], - "value": 1995.3649505229525 - }, - "region": { - "confidence": { - "LA,C": 0.9999999923866701 - }, - "entropy": 1.5319433947009677e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1995": 0.9992381740690662 - }, - "entropy": 0.008170933844910947, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2" - }, - "GRI Lineage Level 3": { - "value": "A.2" - }, - "GRI Lineage Level 4": { - "value": "A.2" - }, - "GRI Lineage Level 5": { - "value": "A.2" - } - } - } - ], - "name": "NODE_0000188", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.12379664830363835, - "Mexico": 0.07237469917160788, - "Panama": 0.07075627467566835, - "Peru": 0.0823192141248006 - }, - "entropy": 2.619027514419648, - "value": "Colombia" - }, - "div": 0.23106278588190185, - "num_date": { - "confidence": [ - 1995.2727095611767, - 1995.3756044161637 - ], - "value": 1995.3348427689084 - }, - "region": { - "confidence": { - "LA,C": 0.9999914017216923 - }, - "entropy": 0.00011336806299264713, - "value": "LA,C" - }, - "year": { - "confidence": { - "1993": 0.050640290024690934, - "1994": 0.0024491247399267323, - "1995": 0.8767526862482512, - "2001": 0.006213807480525592 - }, - "entropy": 0.7295429316952857, - "value": "1995" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.2" - }, - "GRI Lineage Level 2": { - "value": "A.2" - }, - "GRI Lineage Level 3": { - "value": "A.2" - }, - "GRI Lineage Level 4": { - "value": "A.2" - }, - "GRI Lineage Level 5": { - "value": "A.2" - } - } - } - ], - "name": "NODE_0000187", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.12715697948807286, - "Mexico": 0.07198051394771933, - "Panama": 0.07079403682264487, - "Peru": 0.0828029475070354 - }, - "entropy": 2.6166979725197455, - "value": "Colombia" - }, - "div": 0.23106278588190185, - "num_date": { - "confidence": [ - 1993.1133833316294, - 1993.3478944757649 - ], - "value": 1993.2453178186013 - }, - "region": { - "confidence": { - "LA,C": 0.9999111791202403 - }, - "entropy": 0.0009637014619203179, - "value": "LA,C" - }, - "year": { - "confidence": { - "1971": 0.0031042619029614574, - "1993": 0.8356465284571368, - "1995": 0.06928011788560079, - "2001": 0.0034201208120829578 - }, - "entropy": 0.9213350225157502, - "value": "1993" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000007", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.17217236900816232, - "Panama": 0.07035666250523602, - "Peru": 0.08713031906154636, - "USA": 0.06704055803747425 - }, - "entropy": 2.576220133608144, - "value": "Colombia" - }, - "div": 0.23106278588190185, - "num_date": { - "confidence": [ - 1973.0565831381487, - 1973.986522682982 - ], - "value": 1973.7695868423114 - }, - "region": { - "confidence": { - "LA,C": 0.9999998118442198 - }, - "entropy": 0.000003183034431762362, - "value": "LA,C" - }, - "year": { - "confidence": { - "1964": 0.004649496326322948, - "1969": 0.004838900579318875, - "1972": 0.0060430768617264815, - "1973": 0.8790557051761969 - }, - "entropy": 0.8301561185956534, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000008", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.20413427613140944, - "Panama": 0.0693574949590583, - "Peru": 0.08854425232777204, - "USA": 0.06510386969218443 - }, - "entropy": 2.5386106666604644, - "value": "Colombia" - }, - "div": 0.23086614588190185, - "num_date": { - "confidence": [ - 1964.4607319124136, - 1964.9978327426097 - ], - "value": 1964.9125998682318 - }, - "region": { - "confidence": { - "LA,C": 0.99994813539899 - }, - "entropy": 0.000590532480416308, - "value": "LA,C" - }, - "year": { - "confidence": { - "1962": 0.03286140981597313, - "1963": 0.0027299199539784946, - "1964": 0.8871647399557121, - "1973": 0.0031602718472729615 - }, - "entropy": 0.7255223603892622, - "value": "1964" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000010", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.06432972849880557, - "Colombia": 0.2168307451519846, - "Panama": 0.06885514748173119, - "Peru": 0.08883784435605224 - }, - "entropy": 2.5219161812658024, - "value": "Colombia" - }, - "div": 0.23027590588190186, - "num_date": { - "confidence": [ - 1961.961715317006, - 1962.8288129643115 - ], - "value": 1961.9990761142328 - }, - "region": { - "confidence": { - "LA,C": 0.9999995760919773 - }, - "entropy": 0.000006829033705509929, - "value": "LA,C" - }, - "year": { - "confidence": { - "1962": 0.9996435974993584 - }, - "entropy": 0.004279100377774365, - "value": "1962" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: T277S", - "GRI Lineage Root": "A.6" - }, - "mutations": { - "E2": [ - "T277S" - ], - "nuc": [ - "T1116C", - "T1514C", - "A2255G", - "A2633G", - "C3677T", - "A4778G", - "A5033G", - "C5606T", - "C6077T", - "T6230C", - "C6383T", - "T6422C", - "A6683G", - "C7118T", - "T7184C", - "C7771A", - "C8476T", - "A9392T", - "A9619G", - "T9871C", - "T9892C", - "T10321C", - "G10393A", - "T10423C", - "C10849T", - "T10861C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP1: V172A; nsP2: P334L" - }, - "mutations": { - "nsP1": [ - "V172A" - ], - "nsP2": [ - "P334L" - ], - "nuc": [ - "C192T", - "T559C", - "T578C", - "A707G", - "C1031T", - "C1418T", - "T1547C", - "A1937G", - "T2414C", - "C2650T", - "G2651A", - "A2810G", - "C3179T", - "T3770C", - "A3902G", - "C3971T", - "C4019T", - "C4334T", - "C4382T", - "T4727C", - "G5405A", - "G6287A", - "C6380T", - "T6861C", - "A6863G", - "A6992T", - "C7100T", - "T7478C", - "A7646C", - "T7867C", - "T8056C", - "A8215G", - "C8243A", - "G8269A", - "G8287A", - "C8836T", - "T9031C", - "A9079G", - "A9583T", - "C9899T", - "C10150T", - "T10204C", - "T10222C", - "T10441C", - "T10600C", - "T10856C", - "C10903T", - "C10912T", - "T11194C" - ] - } - }, - "name": "KC344519.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.22784314588190188, - "host": { - "value": "Mansonia sp." - }, - "num_date": { - "confidence": [ - 1971.3301369863013, - 1971.4041095890411 - ], - "value": 1971.3301369863013 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1971": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.6" - }, - "GRI Lineage Level 2": { - "value": "A.6" - }, - "GRI Lineage Level 3": { - "value": "A.6" - }, - "GRI Lineage Level 4": { - "value": "A.6" - }, - "GRI Lineage Level 5": { - "value": "A.6" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: G78S, T108P, I136V; E1: T347S; nsP1: H475Q; nsP2: T579A; nsP3: P343Q, P353S, S520T; nsP4: S590C" - }, - "mutations": { - "CP": [ - "G78S", - "T108P", - "I136V" - ], - "E1": [ - "T347S" - ], - "nsP1": [ - "H475Q" - ], - "nsP2": [ - "T579A" - ], - "nsP3": [ - "P343Q", - "P353S", - "S520T" - ], - "nsP4": [ - "S590C" - ], - "nuc": [ - "T755C", - "A1163G", - "T1175C", - "T1190C", - "A1442C", - "C1469A", - "A1508G", - "C1622T", - "C1712T", - "C1761T", - "T2579C", - "T2714C", - "C2849T", - "A3384G", - "T3443C", - "T3476C", - "C3527T", - "T3752C", - "C3780T", - "C4016T", - "T4436C", - "T4772C", - "A4919G", - "T4943C", - "C5059A", - "C5088T", - "C5184T", - "C5228T", - "T5589A", - "G5591T", - "C6290T", - "T6392C", - "T6605C", - "G6656T", - "T6767C", - "C6870T", - "T7079C", - "A7253G", - "A7268T", - "A7470T", - "G7570A", - "G7780A", - "A7786G", - "G7793A", - "A7883C", - "A7967G", - "G7987A", - "C8032T", - "G8131A", - "T8278C", - "A8461G", - "C9196T", - "C9352T", - "G9367T", - "A9460G", - "C9643T", - "C10501T", - "A10726G", - "A11039T", - "T11080C", - "C11155T" - ] - } - }, - "name": "KC344477.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.2289276058819019, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 1974.0013698630137, - 1974.7830238486633 - ], - "value": 1974.0013698630137 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1974": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1974" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.6" - }, - "GRI Lineage Level 2": { - "value": "A.6" - }, - "GRI Lineage Level 3": { - "value": "A.6" - }, - "GRI Lineage Level 4": { - "value": "A.6" - }, - "GRI Lineage Level 5": { - "value": "A.6" - } - } - } - ], - "name": "NODE_0000013", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9998257883177334 - }, - "entropy": 0.002039195193984026, - "value": "Colombia" - }, - "div": 0.2235226258819019, - "num_date": { - "confidence": [ - 1969.8517118172313, - 1970.427905456686 - ], - "value": 1970.175272101777 - }, - "region": { - "confidence": { - "LA,C": 0.9999990914520043 - }, - "entropy": 0.000013943958241706062, - "value": "LA,C" - }, - "year": { - "confidence": { - "1968": 0.013398397232050366, - "1970": 0.012128430376462543, - "1971": 0.5162349230045983, - "1974": 0.0942107479714182 - }, - "entropy": 2.4183798112242947, - "value": "1971" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.6" - }, - "GRI Lineage Level 2": { - "value": "A.6" - }, - "GRI Lineage Level 3": { - "value": "A.6" - }, - "GRI Lineage Level 4": { - "value": "A.6" - }, - "GRI Lineage Level 5": { - "value": "A.6" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A2436C", - "G10348T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {}, - "labels": { - "GRI Lineage Root": "A.5" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: P61L, P66Q; E2: D117G, A192V, T213K; nsP3: P321S, M452K" - }, - "mutations": { - "CP": [ - "P61L", - "P66Q" - ], - "E2": [ - "D117G", - "A192V", - "T213K" - ], - "nsP3": [ - "P321S", - "M452K" - ], - "nuc": [ - "T242C", - "T378C", - "C692T", - "C920T", - "C986T", - "T1116C", - "C1688T", - "C2498T", - "A3269G", - "C3524T", - "C3677T", - "A3794G", - "T4373C", - "C4751A", - "A4919T", - "C4992T", - "T5006C", - "T5231C", - "T5386A", - "G6131A", - "T6410C", - "A6479G", - "G6572A", - "A6593G", - "A6683G", - "G7594A", - "C7743T", - "C7758A", - "C8236T", - "C8239T", - "C8326T", - "C8377T", - "A8913G", - "A8971G", - "C9138T", - "C9201A", - "C9394T", - "T9463C", - "G9514A", - "G9535A", - "T10130C", - "T10321C", - "T11228C", - "T11260C" - ] - } - }, - "name": "KC344484.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Pandya,J., Leal,G., Gorchakov,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.22658310588190186, - "host": { - "value": "Equus ferus caballus" - }, - "num_date": { - "confidence": [ - 1961.0013698630137, - 1961.898904109589 - ], - "value": 1961.0013698630137 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1961": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1961" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.5" - }, - "GRI Lineage Level 2": { - "value": "A.5" - }, - "GRI Lineage Level 3": { - "value": "A.5" - }, - "GRI Lineage Level 4": { - "value": "A.5" - }, - "GRI Lineage Level 5": { - "value": "A.5" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A5063T" - ] - }, - "labels": { - "GRI Lineage Root": "A.5.0" - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: N445S" - }, - "mutations": { - "nsP3": [ - "N445S" - ], - "nuc": [ - "T1116C", - "C1700A", - "T2015C", - "C2558T", - "C3105T", - "T3410C", - "C3485A", - "A3929G", - "T4097C", - "A4910G", - "C5204T", - "A5365G", - "A5378C", - "A5522G", - "C5585T", - "C5666T", - "A6683G", - "A6863G", - "T7184C", - "T7226C", - "A7322G", - "C8032T", - "C9487T", - "C9523T", - "G9538T", - "T10321C", - "C10762T" - ] - } - }, - "name": "MK028850.1", - "node_attrs": { - "author": { - "author": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H.", - "value": "Minogue,T., Wasieloski,L., Clements,T., Adams,M., Coyne,S., Zhao,X., Nagaraj,S., Vavikolanu,K., Nadendla,S., Sadzewicz,L., Tallon,L.J. and Sichtig,H." - }, - "country": { - "confidence": { - "Colombia": 0.09863119820994265, - "Honduras": 0.07200107896408517, - "Mexico": 0.07553422095775451, - "Peru": 0.07717185649239006 - }, - "entropy": 2.6327413979711545, - "value": "Colombia" - }, - "div": 0.22518543588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2018.521917808219, - 2018.521917808219 - ], - "value": 2018.521917808219 - }, - "region": { - "confidence": { - "?": 0.03763842633530198, - "AUSNZ": 0.08588345896946344, - "LA,C": 0.8764781146952347 - }, - "entropy": 0.44982547412244445, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2018": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2018" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.5" - }, - "GRI Lineage Level 2": { - "value": "A.5.0" - }, - "GRI Lineage Level 3": { - "value": "A.5.0" - }, - "GRI Lineage Level 4": { - "value": "A.5.0" - }, - "GRI Lineage Level 5": { - "value": "A.5.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: V419L; nsP2: R59C; nsP3: V331A, S348T, T352I; nsP4: E242D" - }, - "mutations": { - "E1": [ - "V419L" - ], - "nsP2": [ - "R59C" - ], - "nsP3": [ - "V331A", - "S348T", - "T352I" - ], - "nsP4": [ - "E242D" - ], - "nuc": [ - "T179C", - "T533C", - "T905C", - "C1160T", - "C1824T", - "A2081G", - "T2402A", - "T2423C", - "C2624T", - "C2759T", - "T2846C", - "C3026T", - "C3053T", - "A3173G", - "C3179T", - "T3284C", - "A3545G", - "C3780T", - "T3935C", - "T4097C", - "C4397T", - "C4535T", - "A4688G", - "T5023C", - "C5069T", - "T5073A", - "C5086T", - "C5339T", - "C5844T", - "A6047C", - "A6312C", - "A6428T", - "C6732T", - "A7756G", - "C8032T", - "T8140C", - "A8752G", - "C8776T", - "A9337G", - "T9823C", - "G9835A", - "C10177A", - "C10795T", - "T10840C", - "T11008C", - "C11086T", - "T11194C", - "C11236A", - "G11255T" - ] - } - }, - "name": "KC344524.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Colombia" - }, - "div": 0.22779483588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1905.390410958904, - 1905.390410958904 - ], - "value": 1905.390410958904 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1905": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.5" - }, - "GRI Lineage Level 2": { - "value": "A.5.0" - }, - "GRI Lineage Level 3": { - "value": "A.5.0" - }, - "GRI Lineage Level 4": { - "value": "A.5.0" - }, - "GRI Lineage Level 5": { - "value": "A.5.0" - } - } - } - ], - "name": "NODE_0000016", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9981221228880779, - "Peru": 0.001521865705903583 - }, - "entropy": 0.01485898398332722, - "value": "Colombia" - }, - "div": 0.22330937588190186, - "num_date": { - "confidence": [ - 1905.2530009306145, - 1905.3241345092297 - ], - "value": 1905.2843449059594 - }, - "region": { - "confidence": { - "LA,C": 0.9999999120462152 - }, - "entropy": 0.0000015618084538809578, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.8959037225881823, - "1961": 0.0033845308975933254, - "2003": 0.0029333206183661024, - "2018": 0.003329366900916031 - }, - "entropy": 0.7338151035117716, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.5" - }, - "GRI Lineage Level 2": { - "value": "A.5.0" - }, - "GRI Lineage Level 3": { - "value": "A.5.0" - }, - "GRI Lineage Level 4": { - "value": "A.5.0" - }, - "GRI Lineage Level 5": { - "value": "A.5.0" - } - } - } - ], - "name": "NODE_0000015", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.996256858704393, - "Peru": 0.0030421868829839686 - }, - "entropy": 0.02698040595594065, - "value": "Colombia" - }, - "div": 0.22296257588190185, - "num_date": { - "confidence": [ - 1905.2428524978138, - 1905.316862113497 - ], - "value": 1905.2698305696308 - }, - "region": { - "confidence": { - "LA,C": 0.999999984123635 - }, - "entropy": 3.077417909435107e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.8028850832362125, - "1961": 0.006272510380454364, - "2003": 0.005481890642865198, - "2018": 0.0062022030550575495 - }, - "entropy": 1.2536652293461779, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.5" - }, - "GRI Lineage Level 2": { - "value": "A.5" - }, - "GRI Lineage Level 3": { - "value": "A.5" - }, - "GRI Lineage Level 4": { - "value": "A.5" - }, - "GRI Lineage Level 5": { - "value": "A.5" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: T375M; nsP3: T15I, T339I, P342L, V359A" - }, - "mutations": { - "E1": [ - "T375M" - ], - "nsP3": [ - "T15I", - "T339I", - "P342L", - "V359A" - ], - "nuc": [ - "T1116C", - "C1622T", - "C1955T", - "C2036T", - "C2436A", - "A3269G", - "C3413T", - "C3596T", - "C3677T", - "C4075T", - "A5039G", - "C5047T", - "C5056T", - "T5107C", - "A5507G", - "C5606T", - "C6077T", - "A6683G", - "C7025T", - "T7184C", - "T8140C", - "C8896T", - "C9718T", - "C10180T", - "A10246G", - "T10321C", - "T10576C", - "T10861C", - "C11124T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: V47I", - "GRI Lineage Root": "A.4" - }, - "mutations": { - "E1": [ - "V47I" - ], - "nuc": [ - "G10139A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: A11V, E292D, A352V; E3: M6L, K52R; nsP1: K3R; nsP2: K225R, Q654K; nsP3: T13M, I15T, P353S, L358P; nsP4: H550Y" - }, - "mutations": { - "E1": [ - "A11V", - "E292D", - "A352V" - ], - "E3": [ - "M6L", - "K52R" - ], - "nsP1": [ - "K3R" - ], - "nsP2": [ - "K225R", - "Q654K" - ], - "nsP3": [ - "T13M", - "I15T", - "P353S", - "L358P" - ], - "nsP4": [ - "H550Y" - ], - "nuc": [ - "A26C", - "A52G", - "C192T", - "T302C", - "C458T", - "C566T", - "C635T", - "C671T", - "T710C", - "G716A", - "C762T", - "C1169T", - "C1322T", - "A1736G", - "C1748T", - "T1829C", - "C1916T", - "T2123C", - "T2237C", - "A2323G", - "C2519T", - "C2726T", - "A2771G", - "T2846C", - "T2873C", - "C3053T", - "A3194G", - "T3267C", - "A3354C", - "A3503G", - "C3512T", - "C3609A", - "T3689C", - "G3893T", - "C3962T", - "C4069T", - "T4075C", - "T4097C", - "G4178A", - "T4223C", - "C4361T", - "C4376T", - "G4379T", - "A4604C", - "C4658T", - "T4664C", - "G4796A", - "A4883G", - "A5063G", - "C5088T", - "T5104C", - "T5231C", - "T5276C", - "C5339T", - "T5369A", - "A5669G", - "T5766C", - "G5780T", - "G5903A", - "G5957A", - "T6122A", - "C6212T", - "T6233C", - "A6266G", - "C6290T", - "T6356C", - "G6524A", - "G6617A", - "T6641C", - "A6863G", - "C7350T", - "A7481G", - "A7484G", - "C7654T", - "C7726T", - "G7738A", - "A7763C", - "G7780A", - "C7816T", - "G7846A", - "C8038T", - "C8161T", - "T8257C", - "A8402C", - "C8407T", - "A8541G", - "T8722C", - "G8779A", - "G9238A", - "C9340T", - "G9676A", - "T9730C", - "C9817T", - "A9877G", - "T9907C", - "C10032T", - "C10120T", - "A10183G", - "G10246T", - "T10273C", - "A10627G", - "T10816C", - "A10876C", - "C11036T", - "C11055T", - "C11173A" - ] - } - }, - "name": "KC344522.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.23371014588190187, - "host": { - "value": "Homo sapiens" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.8989071038252 - ], - "value": 2000.0013661202186 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.4" - }, - "GRI Lineage Level 2": { - "value": "A.4" - }, - "GRI Lineage Level 3": { - "value": "A.4" - }, - "GRI Lineage Level 4": { - "value": "A.4" - }, - "GRI Lineage Level 5": { - "value": "A.4" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: T194A, E313K; nsP2: V582A", - "GRI Lineage Root": "A.4.0" - }, - "mutations": { - "E2": [ - "T194A", - "E313K" - ], - "nsP2": [ - "V582A" - ], - "nuc": [ - "T1190C", - "A2162C", - "C2507T", - "C2759T", - "T2978G", - "T3394C", - "C3444T", - "C4154T", - "C4619T", - "C5513T", - "G6854A", - "A6968G", - "C7196T", - "T8737A", - "T8857C", - "C8980T", - "A9143G", - "G9211A", - "G9500A", - "G9586A", - "C10366T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: N291D; E3: A28V; nsP2: I375V, Y503H, A661T; nsP3: P389S, A516T; nsP4: S596G" - }, - "mutations": { - "E2": [ - "N291D" - ], - "E3": [ - "A28V" - ], - "nsP2": [ - "I375V", - "Y503H", - "A661T" - ], - "nsP3": [ - "P389S", - "A516T" - ], - "nsP4": [ - "S596G" - ], - "nuc": [ - "C192T", - "G1109A", - "T1592C", - "A2772G", - "C2864T", - "T3156C", - "C3417T", - "C3623T", - "G3630A", - "C4088T", - "A4874G", - "G4991A", - "C5000T", - "C5196T", - "G5408A", - "G5577A", - "T5736C", - "A7488G", - "C7795T", - "C8038T", - "C8161T", - "C8469T", - "C8608T", - "C9355T", - "A9434G", - "C9481T", - "T9529C", - "T9674C", - "T9757C", - "C10189T", - "A10621G", - "A10627G", - "A10873G", - "C11095T" - ] - } - }, - "name": "KC344525.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.22955274588190186, - "host": { - "value": "mosquito" - }, - "num_date": { - "confidence": [ - 1975.0013698630137, - 1975.898904109589 - ], - "value": 1975.0013698630137 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1975": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1975" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.4" - }, - "GRI Lineage Level 2": { - "value": "A.4.0" - }, - "GRI Lineage Level 3": { - "value": "A.4.0" - }, - "GRI Lineage Level 4": { - "value": "A.4.0" - }, - "GRI Lineage Level 5": { - "value": "A.4.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E2: K286Q; nsP1: I487V; nsP2: P404S; nsP3: A449S, P513S, S518G" - }, - "mutations": { - "E2": [ - "K286Q" - ], - "nsP1": [ - "I487V" - ], - "nsP2": [ - "P404S" - ], - "nsP3": [ - "A449S", - "P513S", - "S518G" - ], - "nuc": [ - "C1169T", - "G1499A", - "A1503G", - "T1619C", - "G2270T", - "T2582C", - "C2859T", - "C4205T", - "T4373C", - "T5276C", - "G5376T", - "C5568T", - "A5583G", - "C6677T", - "C8569T", - "C8620T", - "C8782T", - "A8911G", - "A9419C", - "C10141T", - "A10201G" - ] - } - }, - "name": "KC344486.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Peru": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Peru" - }, - "div": 0.22840569588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1970.101095890411, - 1970.9986301369863 - ], - "value": 1970.9986301369863 - }, - "place_of_collection": { - "value": "Peru" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1970": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.4" - }, - "GRI Lineage Level 2": { - "value": "A.4.0" - }, - "GRI Lineage Level 3": { - "value": "A.4.0" - }, - "GRI Lineage Level 4": { - "value": "A.4.0" - }, - "GRI Lineage Level 5": { - "value": "A.4.0" - } - } - } - ], - "name": "NODE_0000019", - "node_attrs": { - "country": { - "confidence": { - "Peru": 0.9995966077258001 - }, - "entropy": 0.003565876515066811, - "value": "Peru" - }, - "div": 0.22656257588190187, - "num_date": { - "confidence": [ - 1970.7828127981757, - 1970.8992319217975 - ], - "value": 1970.842443784895 - }, - "region": { - "confidence": { - "LA,C": 0.999999999339977 - }, - "entropy": 1.4882379597531168e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.8861064434513507, - "1972": 0.021519582215291717, - "1973": 0.00587092259813041, - "1975": 0.015791370980630128 - }, - "entropy": 0.7390565880051646, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.4" - }, - "GRI Lineage Level 2": { - "value": "A.4.0" - }, - "GRI Lineage Level 3": { - "value": "A.4.0" - }, - "GRI Lineage Level 4": { - "value": "A.4.0" - }, - "GRI Lineage Level 5": { - "value": "A.4.0" - } - } - } - ], - "name": "NODE_0000018", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.02037527080052154, - "Peru": 0.979517897512385 - }, - "entropy": 0.10082512940040382, - "value": "Peru" - }, - "div": 0.22451041588190188, - "num_date": { - "confidence": [ - 1970.5067410305621, - 1970.6853783340118 - ], - "value": 1970.6287595257506 - }, - "region": { - "confidence": { - "LA,C": 0.9999999864401855 - }, - "entropy": 2.646505434138172e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.7769934882746028, - "1972": 0.0486816406515753, - "1973": 0.013148711538438785, - "1975": 0.016305141964677097 - }, - "entropy": 1.2929636890161764, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.4" - }, - "GRI Lineage Level 2": { - "value": "A.4" - }, - "GRI Lineage Level 3": { - "value": "A.4" - }, - "GRI Lineage Level 4": { - "value": "A.4" - }, - "GRI Lineage Level 5": { - "value": "A.4" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "E1: A352V, M375T; nsP3: I339T, L342P, A344T, A359V; nsP4: S513T" - }, - "mutations": { - "E1": [ - "A352V", - "M375T" - ], - "nsP3": [ - "I339T", - "L342P", - "A344T", - "A359V" - ], - "nsP4": [ - "S513T" - ], - "nuc": [ - "G1232A", - "C1394T", - "C1568T", - "T1632C", - "T2036C", - "G3110A", - "G3269A", - "C3383T", - "T3413C", - "T3596C", - "T4709C", - "G4985T", - "T5047C", - "T5056C", - "G5061A", - "T5105C", - "C5107T", - "G5507A", - "T5606C", - "A5624G", - "T7025C", - "A7169G", - "T7239A", - "C7316T", - "C7612T", - "G7615A", - "C7978T", - "C8045T", - "C8140T", - "T8590C", - "G8749A", - "T8896C", - "C9326T", - "A9373G", - "T9718C", - "T9775C", - "G10075A", - "T10180C", - "G10246A", - "T10273C", - "C10576T", - "C11055T", - "T11124C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: I15T", - "GRI Lineage Root": "A.3" - }, - "mutations": { - "nsP3": [ - "I15T" - ], - "nuc": [ - "T4075C", - "C10177T", - "C10624T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: P126S; nsP1: A509V, P512S; nsP3: A61V; nsP4: I603T" - }, - "mutations": { - "E2": [ - "P126S" - ], - "nsP1": [ - "A509V", - "P512S" - ], - "nsP3": [ - "A61V" - ], - "nsP4": [ - "I603T" - ], - "nuc": [ - "C536T", - "C692T", - "T1052C", - "C1304T", - "C1496T", - "C1570T", - "C1578T", - "A1871T", - "T2204C", - "C2759T", - "C2799T", - "T3600C", - "C3780T", - "C3932T", - "T4043C", - "C4213T", - "A4478G", - "G6056A", - "C6812T", - "C7187T", - "T7510C", - "A7870G", - "C7912T", - "A7948G", - "A8212G", - "C8248T", - "C8939T", - "A9406G", - "G9748T", - "C10048T", - "C10108T", - "A10174G", - "A10183G", - "C10300T", - "A10378G" - ] - } - }, - "name": "KC344520.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.22848458588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1973.9164383561645, - 1973.9891272456357 - ], - "value": 1973.9164383561645 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1973": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.3" - }, - "GRI Lineage Level 2": { - "value": "A.3" - }, - "GRI Lineage Level 3": { - "value": "A.3" - }, - "GRI Lineage Level 4": { - "value": "A.3" - }, - "GRI Lineage Level 5": { - "value": "A.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: R68K; E3: K57Q; nsP4: H550Y", - "GRI Lineage Root": "A.3.0" - }, - "mutations": { - "CP": [ - "R68K" - ], - "E3": [ - "K57Q" - ], - "nsP4": [ - "H550Y" - ], - "nuc": [ - "C638T", - "C1632T", - "T2510C", - "C2615T", - "C3086T", - "T3428C", - "C3995T", - "T4694C", - "T4847A", - "C4872T", - "C5612T", - "T5963C", - "T6119C", - "C6437T", - "T6647C", - "G6908A", - "C6926A", - "A7346C", - "C7350T", - "G7403A", - "G7764A", - "A7897G", - "C8476T", - "A8554G", - "A8555C", - "C8725A", - "C8929T", - "A9178G", - "T9250C", - "C9265T", - "G9568A", - "T10285C", - "T10813C", - "T10856C", - "T10993C", - "G11050A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: V42L; CP: P98S; E2: V329A; E3: N40S" - }, - "mutations": { - "6k": [ - "V42L" - ], - "CP": [ - "P98S" - ], - "E2": [ - "V329A" - ], - "E3": [ - "N40S" - ], - "nuc": [ - "C1160T", - "C1169T", - "A1443C", - "C1649A", - "T5138C", - "C6711T", - "G6887A", - "C7118T", - "C7334T", - "C7487T", - "C7853T", - "A8505G", - "C8920T", - "C9295T", - "T9549C", - "G9956T", - "C10759T", - "G11251A" - ] - } - }, - "name": "KC344514.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23010110588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1978.5821917808219, - 1978.6413774829607 - ], - "value": 1978.5821917808219 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1978": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1978" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.3" - }, - "GRI Lineage Level 2": { - "value": "A.3.0" - }, - "GRI Lineage Level 3": { - "value": "A.3.0" - }, - "GRI Lineage Level 4": { - "value": "A.3.0" - }, - "GRI Lineage Level 5": { - "value": "A.3.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: T108I, E144D; nsP3: S425F" - }, - "mutations": { - "nsP1": [ - "T108I", - "E144D" - ], - "nsP3": [ - "S425F" - ], - "nuc": [ - "G329A", - "C367T", - "T467C", - "A476T", - "A3206T", - "G3215A", - "C5305T", - "C6923T", - "C7618T", - "T8173C", - "T9508C", - "C10261T" - ] - } - }, - "name": "KC344487.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.22957106588190188, - "host": { - "value": "Aedes fulvus" - }, - "num_date": { - "confidence": [ - 1977.0013698630137, - 1977.9986301369863 - ], - "value": 1977.3035642700863 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1977": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.3" - }, - "GRI Lineage Level 2": { - "value": "A.3.0" - }, - "GRI Lineage Level 3": { - "value": "A.3.0" - }, - "GRI Lineage Level 4": { - "value": "A.3.0" - }, - "GRI Lineage Level 5": { - "value": "A.3.0" - } - } - } - ], - "name": "NODE_0000022", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999996301751377 - }, - "entropy": 0.00000650611708141469, - "value": "Colombia" - }, - "div": 0.22851914588190186, - "num_date": { - "confidence": [ - 1976.701372049189, - 1977.4156241437915 - ], - "value": 1977.1990404394521 - }, - "region": { - "confidence": { - "LA,C": 0.9999999964846251 - }, - "entropy": 7.344435459323539e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1972": 0.0035963038553014077, - "1973": 0.006897905772336182, - "1977": 0.8507000524616426, - "1978": 0.09624608940940883 - }, - "entropy": 0.7123282360814013, - "value": "1977" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.3" - }, - "GRI Lineage Level 2": { - "value": "A.3.0" - }, - "GRI Lineage Level 3": { - "value": "A.3.0" - }, - "GRI Lineage Level 4": { - "value": "A.3.0" - }, - "GRI Lineage Level 5": { - "value": "A.3.0" - } - } - } - ], - "name": "NODE_0000021", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999935977262877 - }, - "entropy": 0.00008481119755132924, - "value": "Colombia" - }, - "div": 0.22537412588190187, - "num_date": { - "confidence": [ - 1973.0358827871069, - 1973.4315581528263 - ], - "value": 1973.2582715722217 - }, - "region": { - "confidence": { - "LA,C": 0.9999999951321604 - }, - "entropy": 1.00116357415728e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.011194440469087347, - "1972": 0.33566724003489945, - "1973": 0.5396563381125102, - "1977": 0.019869774567860363 - }, - "entropy": 1.3947013839903186, - "value": "1973" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.3" - }, - "GRI Lineage Level 2": { - "value": "A.3" - }, - "GRI Lineage Level 3": { - "value": "A.3" - }, - "GRI Lineage Level 4": { - "value": "A.3" - }, - "GRI Lineage Level 5": { - "value": "A.3" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: L358P" - }, - "mutations": { - "nsP3": [ - "L358P" - ], - "nuc": [ - "T3056A", - "C4751T", - "T5104C", - "C5492T", - "G5528A", - "T6687C", - "T6728C", - "T8731C", - "C9124T", - "A9301T", - "C10654T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP2: A61T; nsP3: A61V" - }, - "mutations": { - "nsP2": [ - "A61T" - ], - "nsP3": [ - "A61V" - ], - "nuc": [ - "A764G", - "C1172T", - "T1742C", - "G1830A", - "C2207T", - "C4019T", - "C4213T", - "C4538T", - "C6074T", - "C6134T", - "C9355A", - "C10405T", - "C10435T", - "A10495C", - "C11086T", - "C11122T", - "A11233G" - ] - } - }, - "name": "KC344502.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Colombia" - }, - "div": 0.22778103588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1972.8797447246588, - 1972.9986338797814 - ], - "value": 1972.9986338797814 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1972": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1972" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: I487V; nsP2: I677V", - "GRI Lineage Root": "A.0" - }, - "mutations": { - "nsP1": [ - "I487V" - ], - "nsP2": [ - "I677V" - ], - "nuc": [ - "T695C", - "A1503G", - "A3678G", - "C3845T", - "T4061C", - "T5174C", - "T5369C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: V352A; nsP3: I15T, P342L" - }, - "mutations": { - "E1": [ - "V352A" - ], - "nsP3": [ - "I15T", - "P342L" - ], - "nuc": [ - "C807T", - "C920T", - "A1655G", - "G1862A", - "T2660C", - "G3041A", - "G3068A", - "C3074T", - "C3230T", - "C3527T", - "T4046C", - "T4075C", - "C4154T", - "C4409T", - "G4517A", - "C5056T", - "C5618T", - "T5933A", - "C6293T", - "C6323T", - "T6605C", - "A6731G", - "T6878C", - "C7187T", - "T7585C", - "A7870G", - "G8344A", - "A8389G", - "C8689T", - "C8758T", - "A8923G", - "C9691A", - "T10492C", - "T11055C", - "G11149A", - "C11173T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: V245M; nsP1: I279V; nsP2: T122I, I597V, T647K; nsP3: V359A, A442V, N445D" - }, - "mutations": { - "CP": [ - "V245M" - ], - "nsP1": [ - "I279V" - ], - "nsP2": [ - "T122I", - "I597V", - "T647K" - ], - "nsP3": [ - "V359A", - "A442V", - "N445D" - ], - "nuc": [ - "C671T", - "C695T", - "A879G", - "A926G", - "G1298A", - "T1595C", - "C1608T", - "G1889A", - "A1910G", - "C2014T", - "G2669A", - "G2801A", - "C3014T", - "A3438G", - "C3485T", - "T3491C", - "C3589A", - "C3671T", - "A3896G", - "T3905G", - "C4010T", - "G4130A", - "C4133T", - "C4640T", - "T4727C", - "C4955T", - "T5107C", - "G5198A", - "C5234T", - "A5327G", - "C5356T", - "A5364G", - "A5441G", - "C6149T", - "C6204T", - "T6230C", - "G6440A", - "T6470C", - "T6707C", - "A7082G", - "C7196T", - "T7469C", - "T7852C", - "C7936T", - "A8104G", - "C8134T", - "G8294A", - "C8734T", - "T8905C", - "C9487T", - "C9841T", - "T10204C", - "T10213C", - "T10345C", - "A10885G", - "C11074T", - "C11279T" - ] - } - }, - "name": "KC344521.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "Colombia" - }, - "div": 0.23485537588190186, - "host": { - "value": "mosquito" - }, - "num_date": { - "confidence": [ - 1999.0013698630137, - 1999.2885110856087 - ], - "value": 1999.0013698630137 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1999": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C4061T", - "A4184G", - "C4907T", - "G5789A", - "C6615A", - "A7310G", - "C8032T", - "C8275T", - "T8500C", - "A8554G", - "A9679C", - "C11158T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: A343T; E2: S184N, T213S; nsP2: I446M, L709M" - }, - "mutations": { - "E1": [ - "A343T" - ], - "E2": [ - "S184N", - "T213S" - ], - "nsP2": [ - "I446M", - "L709M" - ], - "nuc": [ - "A503C", - "A992G", - "A1067G", - "C1301T", - "C1361T", - "C1364T", - "G1478T", - "A1763G", - "C2009T", - "T2177C", - "C2273T", - "G2897T", - "A2987G", - "C3053T", - "G3071A", - "C3086T", - "G3638A", - "A3701G", - "C3774A", - "G4469A", - "T4940C", - "G5036A", - "T5138C", - "T5363C", - "C5429T", - "A5471G", - "T5618C", - "T5642C", - "A5645G", - "G5852A", - "C5870T", - "A6452G", - "G6719A", - "T6809A", - "C7025T", - "G7286A", - "T7925C", - "C8236T", - "C8374T", - "C8476T", - "C8743T", - "A8753C", - "G8941A", - "G9114A", - "A9200T", - "C9763T", - "T10285C", - "T10426C", - "C10435T", - "G11027A", - "C11032T", - "C11083T", - "T11161C" - ] - } - }, - "name": "KC344461.2", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23549980588190186, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.7099138046801 - ], - "value": 2000.0013661202186 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "G275A", - "T3248C", - "C6566T", - "C9721T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "nsP3: V104I; nsP4: L54R" - }, - "mutations": { - "nsP3": [ - "V104I" - ], - "nsP4": [ - "L54R" - ], - "nuc": [ - "T278C", - "T491C", - "C1448T", - "T1670C", - "C1892T", - "A2885G", - "C2949T", - "A3116T", - "C3311T", - "C3674T", - "T3719C", - "C4076T", - "C4088T", - "G4341A", - "G4718A", - "G4976A", - "T5276C", - "C5297T", - "T5863G", - "T6197C", - "C7028T", - "C7275T", - "C7873T", - "T8194C", - "G8206T", - "C9451T", - "T9760C", - "C10336T", - "A10669G", - "C10795T", - "A11358G", - "T11365C", - "C11412T" - ] - } - }, - "name": "KC344523.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23401983588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1997.9167444028183, - 1997.9986301369863 - ], - "value": 1997.9986301369863 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: K269R; nsP2: R463K, A661V", - "GRI Lineage Root": "A.0.1" - }, - "mutations": { - "nsP1": [ - "K269R" - ], - "nsP2": [ - "R463K", - "A661V" - ], - "nuc": [ - "A92G", - "A623G", - "A850G", - "G1100A", - "C2027T", - "A2696C", - "C3026T", - "G3037A", - "T3158C", - "C3407T", - "C3631T", - "C4416T", - "A5225T", - "A6299G", - "T6527C", - "G6581A", - "C6794T", - "T7331C", - "C7618T", - "C7936T", - "C8980T", - "C9832A", - "G10705A", - "T11158C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344429.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Moncayo,A.C., Medina,G.M., Kalvatchev,Z., Brault,A.C., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., De Siger,J., Vasquez,C., Walder,R., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Moncayo,A.C., Medina,G.M., Kalvatchev,Z., Brault,A.C., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., De Siger,J., Vasquez,C., Walder,R., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.2330709358819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2001.0013698630137, - 2001.898904109589 - ], - "value": 2001.0013698630137 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2001": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2001" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C326T", - "C2453T", - "T5276C", - "T9052C" - ] - } - }, - "name": "KC344462.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23341831588190187, - "host": { - "value": "Culex vomerifer" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.9986338797814 - ], - "value": 2000.9707986679123 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.1" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C8035T" - ] - }, - "labels": { - "GRI Lineage Root": "A.0.1.0" - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C5841T" - ] - } - }, - "name": "KC344459.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23324425588190187, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.9986338797814 - ], - "value": 2000.9385823979503 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.1.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2453T" - ] - } - }, - "name": "KC344460.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Colombia": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "Colombia" - }, - "div": 0.23324271588190187, - "host": { - "value": "Culex vomerifer" - }, - "num_date": { - "confidence": [ - 2000.0013661202186, - 2000.9986338797814 - ], - "value": 2000.9382699995751 - }, - "place_of_collection": { - "value": "Colombia" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "2000": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.1.0" - } - } - } - ], - "name": "NODE_0000030", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999999974328018 - }, - "entropy": 5.786279695401949e-8, - "value": "Colombia" - }, - "div": 0.23315607588190188, - "num_date": { - "confidence": [ - 2000.6561961345892, - 2000.9954025048753 - ], - "value": 2000.9086668358148 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999741753 - }, - "entropy": 6.635622836608178e-10, - "value": "LA,C" - }, - "year": { - "confidence": { - "2000": 0.9999817411218396 - }, - "entropy": 0.0002285086109957993, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.1.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.1.0" - } - } - } - ], - "name": "NODE_0000028", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999999999645705 - }, - "entropy": 9.24811964243196e-10, - "value": "Colombia" - }, - "div": 0.23306858588190188, - "num_date": { - "confidence": [ - 2000.612227851412, - 2000.9809484189054 - ], - "value": 2000.8696094762604 - }, - "region": { - "confidence": { - "LA,C": 0.9999999999998641 - }, - "entropy": 2.8745243188766944e-12, - "value": "LA,C" - }, - "year": { - "confidence": { - "2000": 0.9967995272341977, - "2001": 0.0030846148434216063 - }, - "entropy": 0.02242919000527745, - "value": "2000" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.1" - }, - "GRI Lineage Level 3": { - "value": "A.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.1" - } - } - } - ], - "name": "NODE_0000027", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999999304542821 - }, - "entropy": 0.000001338395123716435, - "value": "Colombia" - }, - "div": 0.23104128588190187, - "num_date": { - "confidence": [ - 1997.5820426069213, - 1997.7717585453895 - ], - "value": 1997.6797247144768 - }, - "region": { - "confidence": { - "LA,C": 0.9999999993378371 - }, - "entropy": 1.493642261110591e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.5719562078021132, - "1999": 0.042002542601095344, - "2000": 0.3405339978444022, - "2001": 0.0020918262374490827 - }, - "entropy": 1.132018712426409, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000026", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999999004282554 - }, - "entropy": 0.000001867963948527488, - "value": "Colombia" - }, - "div": 0.23068894588190186, - "num_date": { - "confidence": [ - 1997.4911626522094, - 1997.719141901331 - ], - "value": 1997.592060748367 - }, - "region": { - "confidence": { - "LA,C": 0.9999999992918012 - }, - "entropy": 1.591940717087217e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.48920218383582426, - "1999": 0.07341386286199961, - "2000": 0.36583543653166173, - "2001": 0.002962859362347982 - }, - "entropy": 1.3686884208918528, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000025", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999929662836808 - }, - "entropy": 0.00010376383670483258, - "value": "Colombia" - }, - "div": 0.22977083588190186, - "num_date": { - "confidence": [ - 1996.9730604473916, - 1997.4002177912819 - ], - "value": 1997.2068466531764 - }, - "region": { - "confidence": { - "LA,C": 0.9999999496785964 - }, - "entropy": 9.175834005011792e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1981": 0.005916341121384283, - "1997": 0.3686391984974184, - "1999": 0.18599536694054114, - "2000": 0.2767022788132923 - }, - "entropy": 1.976314362645015, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP1: H475R; nsP2: D454E, Q572R" - }, - "mutations": { - "nsP1": [ - "H475R" - ], - "nsP2": [ - "D454E", - "Q572R" - ], - "nuc": [ - "A26C", - "T959C", - "C1292T", - "A1468G", - "G2468A", - "T3011G", - "A3364G", - "T6035C", - "T7103C", - "C7305T", - "T8722C", - "T9262C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: I20T, Q81R; nsP3: A357P" - }, - "mutations": { - "E2": [ - "I20T", - "Q81R" - ], - "nsP3": [ - "A357P" - ], - "nuc": [ - "C2684T", - "C3017T", - "G5100C", - "T5417C", - "T5964C", - "C6434T", - "T6464C", - "C6551T", - "C6801T", - "G7723A", - "C7972T", - "C8164T", - "T8622C", - "A8805G", - "C10255T", - "T11406C", - "C11407T", - "T11411C", - "C11412T", - "T11416C" - ] - } - }, - "name": "KC344508.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.0016632006435837227, - "Colombia": 0.9821878490997513, - "Panama": 0.001909450525893812, - "Peru": 0.00351458206508558 - }, - "entropy": 0.1331623140853758, - "value": "Colombia" - }, - "div": 0.2297059158819019, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1974.8341941708695, - 1974.9986301369863 - ], - "value": 1974.9986301369863 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1974": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1974" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: I15T" - }, - "mutations": { - "nsP3": [ - "I15T" - ], - "nuc": [ - "T4075C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: I18V; E2: T2A" - }, - "mutations": { - "E1": [ - "I18V" - ], - "E2": [ - "T2A" - ], - "nuc": [ - "G1046A", - "C2799T", - "G4139A", - "T5633C", - "C6539T", - "G6821A", - "C8252T", - "A8567G", - "C9352T", - "A10052G", - "C10057T", - "T10654C", - "C10954T", - "C11296T" - ] - } - }, - "name": "KC344509.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.004544497844524923, - "Colombia": 0.9508488256872362, - "Panama": 0.005112579475708843, - "Peru": 0.008656848905180163 - }, - "entropy": 0.31818320773727843, - "value": "Colombia" - }, - "div": 0.22909156588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1976.0013661202186, - 1976.7939749229458 - ], - "value": 1976.0013661202186 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1976": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1976" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "C2690T", - "T3452A", - "T7478C", - "C7651T", - "C9361T", - "C9820T", - "T11354C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E2: V321I; E3: R58K; nsP1: S479P, A484D; nsP2: T171I, H614R; nsP3: P343L, T349V; nsP4: I75M" - }, - "mutations": { - "E2": [ - "V321I" - ], - "E3": [ - "R58K" - ], - "nsP1": [ - "S479P", - "A484D" - ], - "nsP2": [ - "T171I", - "H614R" - ], - "nsP3": [ - "P343L", - "T349V" - ], - "nsP4": [ - "I75M" - ], - "nuc": [ - "C251T", - "A476G", - "C803T", - "T1479C", - "C1495A", - "T1913C", - "A1934G", - "T2093A", - "C2161T", - "T2486C", - "C2759T", - "T2966A", - "A3490G", - "T3515C", - "C3596T", - "C3650T", - "A3929G", - "T4388C", - "C4541T", - "T4592C", - "C5059T", - "A5076G", - "C5077T", - "C5267T", - "C5315T", - "C5573G", - "A5927G", - "C6000T", - "T6155C", - "A7073G", - "C7238T", - "C8038T", - "C8134T", - "G8559A", - "G9142A", - "C9187T", - "C9223T", - "G9524A", - "C9643T", - "A9754T", - "T9760C", - "A10174T", - "C10966G", - "A11379T" - ] - } - }, - "name": "U55362.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Australia": 0.04567568323139745, - "Colombia": 0.4792353288930772, - "Panama": 0.04953861874576711, - "Peru": 0.0724565786491501 - }, - "entropy": 2.010052419744732, - "value": "Colombia" - }, - "div": 0.2323380258819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1999.527397260274, - 1999.527397260274 - ], - "value": 1999.527397260274 - }, - "region": { - "confidence": { - "?": 0.006732324672364294, - "AUSNZ": 0.016309582776623675, - "LA,C": 0.9769580925510122 - }, - "entropy": 0.12357190584150907, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1999": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1999" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: A100V; E2: D117N; nsP2: T122I, R591C", - "GRI Lineage Root": "A.0.0" - }, - "mutations": { - "CP": [ - "A100V" - ], - "E2": [ - "D117N" - ], - "nsP2": [ - "T122I", - "R591C" - ], - "nuc": [ - "C2014T", - "A2216T", - "A2468G", - "A3062G", - "T3410C", - "C3420T", - "A4220G", - "C4529T", - "T4625C", - "A5678G", - "C6666T", - "A6701G", - "C7275T", - "A7783G", - "C7860T", - "C7972T", - "A8554G", - "G8912A", - "C9088T", - "C9364T", - "G9379A", - "C9668T", - "A10099G", - "C10516T", - "A10708G", - "C10912T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "6k: T3I; E2: S118L; E3: P41S; nsP1: C104F; nsP2: K350E, V469A, D670A; nsP3: G498S, V499A", - "GRI Lineage Root": "A.0.0.2" - }, - "mutations": { - "6k": [ - "T3I" - ], - "E2": [ - "S118L" - ], - "E3": [ - "P41S" - ], - "nsP1": [ - "C104F" - ], - "nsP2": [ - "K350E", - "V469A", - "D670A" - ], - "nsP3": [ - "G498S", - "V499A" - ], - "nuc": [ - "G355T", - "C686T", - "T944A", - "A2696T", - "A2697G", - "T3055C", - "A3658C", - "T4295C", - "G5012A", - "T5243G", - "G5523A", - "T5527C", - "C8507T", - "C8677T", - "A8911G", - "C8916T", - "C9025T", - "T9469C", - "C9481T", - "C9840T", - "C9868T", - "G11176A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "mutations": { - "nuc": [ - "T1187C", - "G1868A", - "G8209C", - "T9802C", - "A11230G" - ] - } - }, - "name": "AF004472.2", - "node_attrs": { - "author": { - "author": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C.", - "value": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.04326900141432222, - "Colombia": 0.5088428937501545, - "Panama": 0.04704557143878269, - "Peru": 0.06946425508405446 - }, - "entropy": 1.9346560731206315, - "value": "Colombia" - }, - "div": 0.23315966588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1997.3712328767124, - 1997.3712328767124 - ], - "value": 1997.3712328767124 - }, - "region": { - "confidence": { - "?": 0.005796489239984758, - "AUSNZ": 0.014074810151788724, - "LA,C": 0.9801287006082267 - }, - "entropy": 0.10953348210875784, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.2" - } - } - }, - { - "branch_attrs": { - "mutations": { - "nuc": [ - "A2297G", - "A2630G", - "A3521G", - "A7409G", - "A9004G" - ] - } - }, - "name": "AF004458.2", - "node_attrs": { - "author": { - "author": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C.", - "value": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.018758010126763553, - "Colombia": 0.7938739768592489, - "Panama": 0.02078488939293338, - "Peru": 0.03302541698638627 - }, - "entropy": 1.0253227507607343, - "value": "Colombia" - }, - "div": 0.23315962588190187, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1981.8616438356164, - 1981.8616438356164 - ], - "value": 1981.8616438356164 - }, - "region": { - "confidence": { - "LA,C": 0.9992420722191936 - }, - "entropy": 0.006646859946956044, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1981": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.2" - } - } - } - ], - "name": "NODE_0000035", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.01833245800831106, - "Colombia": 0.7986398870927759, - "Panama": 0.020319225966678345, - "Peru": 0.032322924176496834 - }, - "entropy": 1.0068058752971754, - "value": "Colombia" - }, - "div": 0.23272158588190187, - "num_date": { - "confidence": [ - 1981.7944668119114, - 1981.8472182627283 - ], - "value": 1981.8307908100364 - }, - "region": { - "confidence": { - "LA,C": 0.9994968074599725 - }, - "entropy": 0.004614344452496613, - "value": "LA,C" - }, - "year": { - "confidence": { - "1976": 0.004973229376118887, - "1981": 0.8801739197626828, - "1983": 0.05073692977910859, - "1997": 0.003055114694365684 - }, - "entropy": 0.7089336966010824, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.2" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.2" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP2: T589A; nsP3: A433T, R450S, S484C; nsP4: V253I" - }, - "mutations": { - "nsP2": [ - "T589A" - ], - "nsP3": [ - "A433T", - "R450S", - "S484C" - ], - "nsP4": [ - "V253I" - ], - "nuc": [ - "C401T", - "T1589A", - "C1956T", - "T2153C", - "A2285G", - "G2738A", - "C2894T", - "T3195C", - "G3212T", - "A3414G", - "G3590T", - "T3743C", - "T3752C", - "T3920C", - "C4937T", - "C5174T", - "G5328A", - "G5381T", - "G5408A", - "A5441T", - "T5444C", - "A5481T", - "T5960C", - "T6401C", - "T6422C", - "G6459A", - "C6620A", - "C8038T", - "T8662C", - "C9446T", - "A9595G", - "C9706T", - "T9892C", - "A10408C", - "T10423C", - "C10435T", - "T10642C", - "A11360T" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "CP: G76R; E2: G193R, T213R; nsP1: N167D, L528F; nsP3: H212Y, T368M", - "GRI Lineage Root": "A.0.0.1" - }, - "mutations": { - "CP": [ - "G76R" - ], - "E2": [ - "G193R", - "T213R" - ], - "nsP1": [ - "N167D", - "L528F" - ], - "nsP3": [ - "H212Y", - "T368M" - ], - "nuc": [ - "T161C", - "G464A", - "A543G", - "G1628T", - "C4665T", - "C4667T", - "C5134T", - "C5792T", - "G6251A", - "C7241A", - "G7787A", - "T7834C", - "C8506T", - "T8704A", - "T9124C", - "G9140A", - "C9201G", - "T9283C", - "C9334A", - "T9896C", - "C9946T", - "C10240T", - "T10351C", - "G10462A", - "G11305A" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: K384R; nsP4: I2T" - }, - "mutations": { - "E1": [ - "K384R" - ], - "nsP4": [ - "I2T" - ], - "nuc": [ - "T311C", - "C1712T", - "C2384T", - "T3380C", - "T5707C", - "T5867C", - "C7603T", - "A7744G", - "A11151G" - ] - } - }, - "name": "U55360.2", - "node_attrs": { - "author": { - "author": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B.", - "value": "Weaver,S.C., Salas,R., Rico-Hesse,R., Ludwig,G.V., Oberste,M.S., Boshell,J. and Tesh,R.B." - }, - "country": { - "confidence": { - "Australia": 0.022173506551152963, - "Colombia": 0.7554492451766928, - "Panama": 0.02451300908475546, - "Peru": 0.03859435529807255 - }, - "entropy": 1.1698428595519021, - "value": "Colombia" - }, - "div": 0.23728399588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1983.5054794520547, - 1983.5794520547945 - ], - "value": 1983.5794520547945 - }, - "region": { - "confidence": { - "LA,C": 0.9991110447576744 - }, - "entropy": 0.0076544222557301455, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1983": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1983" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "nsP3: H471L" - }, - "mutations": { - "nsP3": [ - "H471L" - ], - "nuc": [ - "C2039G", - "T3719C", - "T4373C", - "A5443T", - "T6497C", - "C8677T" - ] - } - }, - "name": "AF004459.2", - "node_attrs": { - "author": { - "author": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C.", - "value": "Powers,A.M., Oberste,M.S., Brault,A.C., Rico-Hesse,R., Schmura,S.M., Smith,J.F., Kang,W., Sweeney,W.P. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.03862127164136976, - "Colombia": 0.5649412337168697, - "Panama": 0.042174573174205324, - "Peru": 0.06330955117765241 - }, - "entropy": 1.7825950146017662, - "value": "Colombia" - }, - "div": 0.23684551588190186, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1993.6671232876713, - 1993.6671232876713 - ], - "value": 1993.6671232876713 - }, - "region": { - "confidence": { - "?": 0.0038944109373082662, - "AUSNZ": 0.009511227603820725, - "LA,C": 0.9865943614588711 - }, - "entropy": 0.07919984927637658, - "value": "LA,C" - }, - "subtype": { - "value": "IC" - }, - "year": { - "confidence": { - "1993": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1993" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.1" - } - } - } - ], - "name": "NODE_0000037", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.021774288152969442, - "Colombia": 0.7599569694792718, - "Panama": 0.024078133691194433, - "Peru": 0.03794998008142812 - }, - "entropy": 1.1533098386608063, - "value": "Colombia" - }, - "div": 0.23640787588190187, - "num_date": { - "confidence": [ - 1983.4409160923642, - 1983.532447964996 - ], - "value": 1983.4941612762138 - }, - "region": { - "confidence": { - "LA,C": 0.999365705203641 - }, - "entropy": 0.005671210978233638, - "value": "LA,C" - }, - "year": { - "confidence": { - "1981": 0.050258076178979094, - "1983": 0.8823787706205252, - "1993": 0.0023891391902968475, - "1997": 0.003028252417759846 - }, - "entropy": 0.6991061501189608, - "value": "1983" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.1" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.1" - } - } - }, - { - "branch_attrs": { - "labels": { - "aa": "CP: Q86P; nsP1: E106G; nsP3: P469L, R489G; nsP4: S176A", - "GRI Lineage Root": "A.0.0.0" - }, - "mutations": { - "CP": [ - "Q86P" - ], - "nsP1": [ - "E106G" - ], - "nsP3": [ - "P469L", - "R489G" - ], - "nsP4": [ - "S176A" - ], - "nuc": [ - "A361G", - "A680G", - "G1286A", - "C1844T", - "C2054T", - "C2507T", - "T2510C", - "T2786C", - "T3092C", - "C3125T", - "C3236T", - "T3425C", - "C3650T", - "C3932T", - "A4040T", - "C4061T", - "T4325C", - "C5435T", - "C5437T", - "C5480T", - "A5496G", - "C5612A", - "C6035T", - "C6080T", - "T6228G", - "C6635A", - "T6665C", - "T6861C", - "C7031T", - "A7139C", - "A7268C", - "T7347C", - "T7609C", - "G7780A", - "A7818C", - "C8620T", - "C8677T", - "G8863A", - "C9254T", - "T9694C", - "C9721T", - "A10075G", - "T10564C" - ] - } - }, - "children": [ - { - "branch_attrs": { - "labels": { - "aa": "E1: G416R" - }, - "mutations": { - "E1": [ - "G416R" - ], - "nuc": [ - "A5099G", - "G11246A" - ] - } - }, - "name": "AF100566.1", - "node_attrs": { - "author": { - "author": "Wang,E., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., Vasquez,C. and Weaver,S.C.", - "value": "Wang,E., Barrera,R., Boshell,J., Ferro,C., Freier,J.E., Navarro,J.C., Salas,R., Vasquez,C. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.04387591296602571, - "Colombia": 0.5014160641482603, - "Panama": 0.047676326537892076, - "Peru": 0.07023245310278614 - }, - "entropy": 1.9538829648077225, - "value": "Colombia" - }, - "div": 0.23807982588190188, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 1997.7301369863014, - 1997.7301369863014 - ], - "value": 1997.7301369863014 - }, - "region": { - "confidence": { - "LA,C": 0.9997362851086852 - }, - "entropy": 0.002595130823212425, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "MF459684.1", - "node_attrs": { - "author": { - "author": "Kutchko,K.M., Madden,E.A., Morrison,C., Plante,K.S., Sanders,W., Vincent,H.A., Long,K.M., Moorman,N.J., Heise,M.T. and Laederach,A.", - "value": "Kutchko,K.M., Madden,E.A., Morrison,C., Plante,K.S., Sanders,W., Vincent,H.A., Long,K.M., Moorman,N.J., Heise,M.T. and Laederach,A." - }, - "country": { - "confidence": { - "Australia": 0.05929821395901037, - "Colombia": 0.29976791996733687, - "Panama": 0.06303746558860963, - "Peru": 0.08553495860628577 - }, - "entropy": 2.39344583345726, - "value": "Colombia" - }, - "div": 0.2379075658819019, - "host": { - "value": "unknown_host" - }, - "num_date": { - "confidence": [ - 2017.5191780821917, - 2017.5191780821917 - ], - "value": 2017.5191780821917 - }, - "region": { - "confidence": { - "?": 0.007201760020568326, - "AUSNZ": 0.017389141439703354, - "LA,C": 0.9754090985397283 - }, - "entropy": 0.13027463797380295, - "value": "LA,C" - }, - "subtype": { - "value": "unknown_subtype" - }, - "year": { - "confidence": { - "2017": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "2017" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.0" - } - } - }, - { - "branch_attrs": { - "mutations": {} - }, - "name": "KC344513.1", - "node_attrs": { - "author": { - "author": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C.", - "value": "Dugan,V.G., Halpin,R., Ghedin,E., Wester,E., Bera,J., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katzel,D., Li,K., Schobel,S., Shrivastava,S., Thovarai,V., Wang,S., Forrester,N., Adams,A.P., Chen,R., Aguilar,P., Leal,G., Gorchakov,R., Pandya,J., Wentworth,D.E. and Weaver,S.C." - }, - "country": { - "confidence": { - "Australia": 0.04387591296602571, - "Colombia": 0.5014160641482603, - "Panama": 0.047676326537892076, - "Peru": 0.07023245310278614 - }, - "entropy": 1.9538829648077225, - "value": "Colombia" - }, - "div": 0.23790722588190188, - "host": { - "value": "Mesocricetus auratus" - }, - "num_date": { - "confidence": [ - 1997.6441181216678, - 1997.7533977099604 - ], - "value": 1997.7102447654115 - }, - "place_of_collection": { - "value": "Venezuela" - }, - "region": { - "confidence": { - "LA,C": 0.9999999999999999 - }, - "entropy": -9.99866855976916e-13, - "value": "LA,C" - }, - "subtype": { - "value": "ID" - }, - "year": { - "confidence": { - "1997": 1 - }, - "entropy": -1.000088900581841e-12, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.0" - } - } - } - ], - "name": "NODE_0000038", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.043646863962306034, - "Colombia": 0.5042219667106093, - "Panama": 0.04743843626548195, - "Peru": 0.06994357552767966 - }, - "entropy": 1.9466436709655763, - "value": "Colombia" - }, - "div": 0.2379052158819019, - "num_date": { - "confidence": [ - 1997.6424857394559, - 1997.7236640484139 - ], - "value": 1997.6977287055163 - }, - "region": { - "confidence": { - "LA,C": 0.9999913030827305 - }, - "entropy": 0.00011457046940622928, - "value": "LA,C" - }, - "year": { - "confidence": { - "1997": 0.9996633394926573 - }, - "entropy": 0.004290917845020774, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0.0" - } - } - } - ], - "name": "NODE_0000036", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.02110960675811823, - "Colombia": 0.7674522311200107, - "Panama": 0.023353553819825235, - "Peru": 0.036873200944360675 - }, - "entropy": 1.1255784582009882, - "value": "Colombia" - }, - "div": 0.2342113158819019, - "num_date": { - "confidence": [ - 1983.0439101738566, - 1983.2724793860593 - ], - "value": 1983.1645454082416 - }, - "region": { - "confidence": { - "LA,C": 0.999785722187205 - }, - "entropy": 0.002136199146246469, - "value": "LA,C" - }, - "year": { - "confidence": { - "1976": 0.005185589323045499, - "1981": 0.13975954173625926, - "1983": 0.7082445696800937, - "1997": 0.006824961170237169 - }, - "entropy": 1.384928563164749, - "value": "1983" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0" - } - } - } - ], - "name": "NODE_0000034", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.017798126688538272, - "Colombia": 0.8046175642418076, - "Panama": 0.01973418111235808, - "Peru": 0.031438248418348656 - }, - "entropy": 0.9833853399864737, - "value": "Colombia" - }, - "div": 0.23086963588190187, - "num_date": { - "confidence": [ - 1981.4846627398176, - 1981.6706347709878 - ], - "value": 1981.5818183720103 - }, - "region": { - "confidence": { - "LA,C": 0.9998141196848849 - }, - "entropy": 0.0018795246852003537, - "value": "LA,C" - }, - "year": { - "confidence": { - "1976": 0.010916184729875362, - "1981": 0.7453790913153734, - "1983": 0.11716559325540511, - "1997": 0.005957550830214258 - }, - "entropy": 1.2605111028891494, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0.0" - }, - "GRI Lineage Level 3": { - "value": "A.0.0" - }, - "GRI Lineage Level 4": { - "value": "A.0.0" - }, - "GRI Lineage Level 5": { - "value": "A.0.0" - } - } - } - ], - "name": "NODE_0000033", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.01679189587947113, - "Colombia": 0.815855230104186, - "Panama": 0.018631412917173004, - "Peru": 0.02976449100884851 - }, - "entropy": 0.9387495963247081, - "value": "Colombia" - }, - "div": 0.22849284588190188, - "num_date": { - "confidence": [ - 1980.8870097999043, - 1981.2617272369707 - ], - "value": 1981.1193153614888 - }, - "region": { - "confidence": { - "LA,C": 0.999824301473533 - }, - "entropy": 0.0017864701024133997, - "value": "LA,C" - }, - "year": { - "confidence": { - "1976": 0.02881796750593176, - "1981": 0.5778017664253214, - "1983": 0.09699670378150144, - "1997": 0.011427028156286835 - }, - "entropy": 2.1308680502253425, - "value": "1981" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000212", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.0040102029846040745, - "Colombia": 0.9566710647474986, - "Panama": 0.004519196263860151, - "Peru": 0.007707949843161691 - }, - "entropy": 0.2859871809515546, - "value": "Colombia" - }, - "div": 0.22786381588190188, - "num_date": { - "confidence": [ - 1975.6714475597435, - 1976.582030743426 - ], - "value": 1975.8605683975925 - }, - "region": { - "confidence": { - "LA,C": 0.9999999849886704 - }, - "entropy": 2.918784707853492e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1972": 0.005283520316083703, - "1974": 0.1068893309822168, - "1976": 0.8304071307038825, - "1981": 0.004252824952550612 - }, - "entropy": 0.8009755367998637, - "value": "1976" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000031", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.0011070011119603581, - "Colombia": 0.9882212457844984, - "Panama": 0.001290243291897546, - "Peru": 0.0025149503342181403 - }, - "entropy": 0.09267747563547214, - "value": "Colombia" - }, - "div": 0.22786381588190188, - "num_date": { - "confidence": [ - 1974.7172641774068, - 1974.8694313454869 - ], - "value": 1974.7995419507415 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997950203 - }, - "entropy": 4.858577184872647e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1972": 0.03363211739805653, - "1973": 0.003852874078408351, - "1974": 0.8301609190568094, - "1976": 0.08922881482025616 - }, - "entropy": 0.8037063815247377, - "value": "1974" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000024", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9953042573020886, - "Peru": 0.001337521336792121 - }, - "entropy": 0.04065885022307984, - "value": "Colombia" - }, - "div": 0.22670337588190187, - "num_date": { - "confidence": [ - 1974.4231196584954, - 1974.6891696101663 - ], - "value": 1974.5664495501833 - }, - "region": { - "confidence": { - "LA,C": 0.9999999706536684 - }, - "entropy": 5.509387683552069e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1972": 0.10124348065297763, - "1973": 0.011705379901022418, - "1974": 0.6959220451888428, - "1976": 0.0764555794823826 - }, - "entropy": 1.4135938046128371, - "value": "1974" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A.0" - }, - "GRI Lineage Level 2": { - "value": "A.0" - }, - "GRI Lineage Level 3": { - "value": "A.0" - }, - "GRI Lineage Level 4": { - "value": "A.0" - }, - "GRI Lineage Level 5": { - "value": "A.0" - } - } - } - ], - "name": "NODE_0000023", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9999673718421146 - }, - "entropy": 0.00037293026234872987, - "value": "Colombia" - }, - "div": 0.22620141588190187, - "num_date": { - "confidence": [ - 1972.770574420757, - 1972.8971748862302 - ], - "value": 1972.8361441111904 - }, - "region": { - "confidence": { - "LA,C": 0.9999999997728336 - }, - "entropy": 5.365093166397302e-9, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.009414182364046855, - "1972": 0.8619157027395382, - "1973": 0.07318417095368533, - "1974": 0.02195958688377747 - }, - "entropy": 0.6838326369578114, - "value": "1972" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000020", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9997646430197754 - }, - "entropy": 0.0022197840117442924, - "value": "Colombia" - }, - "div": 0.22520832588190187, - "num_date": { - "confidence": [ - 1972.5529082443136, - 1972.757729724966 - ], - "value": 1972.6771145028897 - }, - "region": { - "confidence": { - "LA,C": 0.9999999990512265 - }, - "entropy": 2.1060251843575146e-8, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.022056368059578467, - "1972": 0.7252438764416685, - "1973": 0.170585789563398, - "1974": 0.018227975762299863 - }, - "entropy": 1.1023804548131624, - "value": "1972" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000017", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.25878256402447397, - "Peru": 0.7393321108818024 - }, - "entropy": 0.5893807788716093, - "value": "Peru" - }, - "div": 0.22296210588190188, - "num_date": { - "confidence": [ - 1970.0146125995484, - 1970.3967650783281 - ], - "value": 1970.2167563605217 - }, - "region": { - "confidence": { - "LA,C": 0.9999997861644806 - }, - "entropy": 0.0000035907186206528837, - "value": "LA,C" - }, - "year": { - "confidence": { - "1970": 0.5977658099553602, - "1972": 0.1054115942541935, - "1973": 0.027808723037702793, - "1975": 0.016500375396095612 - }, - "entropy": 2.0114063403642652, - "value": "1970" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000014", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9916194882526546, - "Panama": 0.0014786857899371803, - "Peru": 0.006620327258906081 - }, - "entropy": 0.05411497054813109, - "value": "Colombia" - }, - "div": 0.22269678588190187, - "num_date": { - "confidence": [ - 1905.2332008400324, - 1905.3002479864174 - ], - "value": 1905.281698364595 - }, - "region": { - "confidence": { - "LA,C": 0.9999999889062585 - }, - "entropy": 2.1886414360937348e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.719764688922431, - "1961": 0.008731130049968758, - "2003": 0.007694138761599587, - "2018": 0.008677593612798719 - }, - "entropy": 1.6700464119319745, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000012", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.988178665652014, - "Panama": 0.002841780721848681, - "Peru": 0.008386640124401507 - }, - "entropy": 0.07422182625118523, - "value": "Colombia" - }, - "div": 0.22223647588190187, - "num_date": { - "confidence": [ - 1905.2178529879022, - 1905.28638177016 - ], - "value": 1905.2602561127442 - }, - "region": { - "confidence": { - "LA,C": 0.9999999876500475 - }, - "entropy": 2.420890550297016e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.6454887681979521, - "1961": 0.010818919363830297, - "2003": 0.009612567530526042, - "2018": 0.010807256155940024 - }, - "entropy": 2.012771091668254, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000011", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9805327670262782, - "Panama": 0.006119286125641385, - "Peru": 0.011864013543444523 - }, - "entropy": 0.11606416628699698, - "value": "Colombia" - }, - "div": 0.22188698588190187, - "num_date": { - "confidence": [ - 1905.2010861403687, - 1905.2760216653621 - ], - "value": 1905.233860772856 - }, - "region": { - "confidence": { - "LA,C": 0.9999999710915601 - }, - "entropy": 5.407066053521536e-7, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.579115784929235, - "1961": 0.012586826908961448, - "2003": 0.011274463831422887, - "2018": 0.012636435869712066 - }, - "entropy": 2.2985636541082504, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000040", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.9621286247545444, - "Panama": 0.014074290569288841, - "Peru": 0.020278188976103263 - }, - "entropy": 0.2040064516889992, - "value": "Colombia" - }, - "div": 0.21262962588190187, - "num_date": { - "confidence": [ - 1904.6390478086184, - 1904.8789782327376 - ], - "value": 1904.748642977498 - }, - "region": { - "confidence": { - "LA,C": 0.9999997802811075 - }, - "entropy": 0.000003617366426489838, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.44596934847210773, - "1961": 0.015805698378200655, - "2003": 0.014431982436345333, - "2018": 0.016057165232290716 - }, - "entropy": 2.817953861923637, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "A" - }, - "GRI Lineage Level 1": { - "value": "A" - }, - "GRI Lineage Level 2": { - "value": "A" - }, - "GRI Lineage Level 3": { - "value": "A" - }, - "GRI Lineage Level 4": { - "value": "A" - }, - "GRI Lineage Level 5": { - "value": "A" - } - } - } - ], - "name": "NODE_0000062", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.0016349735397621853, - "Colombia": 0.9438140071754046, - "Panama": 0.026855366625045885, - "Peru": 0.02175081606325656 - }, - "entropy": 0.2892582333915326, - "value": "Colombia" - }, - "div": 0.20675917588190187, - "num_date": { - "confidence": [ - 1904.1844396292806, - 1904.557956385685 - ], - "value": 1904.370455066759 - }, - "region": { - "confidence": { - "LA,C": 0.9999971876366979 - }, - "entropy": 0.00003907868995256812, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.3646612173653449, - "1961": 0.017509092381239152, - "2003": 0.01621843302538966, - "2018": 0.017946046474526155 - }, - "entropy": 3.0999812148733707, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000063", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.0035717240857552116, - "Colombia": 0.918713763300258, - "Panama": 0.03917901600105259, - "Peru": 0.02503901597446963 - }, - "entropy": 0.40574064236834206, - "value": "Colombia" - }, - "div": 0.19897762588190188, - "num_date": { - "confidence": [ - 1903.344656383954, - 1903.8558629854774 - ], - "value": 1903.6044187701293 - }, - "region": { - "confidence": { - "LA,C": 0.9999660376187114 - }, - "entropy": 0.0003876725553238178, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.24457298343763126, - "1961": 0.019533171617723395, - "2003": 0.018589432103726003, - "2018": 0.020357947211796897 - }, - "entropy": 3.4631763533740796, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000081", - "node_attrs": { - "country": { - "confidence": { - "Australia": 0.02832303821302187, - "Colombia": 0.746347949586664, - "Panama": 0.060113940451042444, - "Peru": 0.05884312477173358 - }, - "entropy": 1.1346491081900025, - "value": "Colombia" - }, - "div": 0.15681126588190186, - "num_date": { - "confidence": [ - 1895.1297710092251, - 1896.9044719894887 - ], - "value": 1896.1263672521156 - }, - "region": { - "confidence": { - "AUSNZ": 0.0030404409306991815, - "LA,C": 0.9968629989871087 - }, - "entropy": 0.021646450582498276, - "value": "LA,C" - }, - "year": { - "confidence": { - "1905": 0.02470739445892686, - "1973": 0.02141267939710405, - "1997": 0.022077329032033636, - "2018": 0.022066419189128675 - }, - "entropy": 3.870590355116553, - "value": "1905" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000083", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.44806667028975, - "Mexico": 0.04903326279552259, - "Panama": 0.10928033621660015, - "Peru": 0.12590051786484113 - }, - "entropy": 1.9722371672531818, - "value": "Colombia" - }, - "div": 0.05155828588190187, - "num_date": { - "confidence": [ - 1874.4685325058429, - 1879.213676573385 - ], - "value": 1877.028999985536 - }, - "region": { - "confidence": { - "AUSNZ": 0.0014030177554253203, - "LA,C": 0.9984994800828956 - }, - "entropy": 0.011616493824780617, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.021511293553895833, - "1997": 0.022187063087030584, - "2000": 0.02144604600942689, - "2018": 0.021927403270672375 - }, - "entropy": 3.870914405538639, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } - ], - "name": "NODE_0000000", - "node_attrs": { - "country": { - "confidence": { - "Colombia": 0.35764207116186425, - "Mexico": 0.05084214193175139, - "Panama": 0.10113568034990976, - "Peru": 0.16009240483062728 - }, - "entropy": 2.1647940919749296, - "value": "Colombia" - }, - "div": 0, - "num_date": { - "confidence": [ - 1864.06229215943, - 1870.174711451499 - ], - "value": 1867.384095048895 - }, - "region": { - "confidence": { - "AUSNZ": 0.0023092016227335916, - "LA,C": 0.9972949656798725 - }, - "entropy": 0.01982135576093214, - "value": "LA,C" - }, - "year": { - "confidence": { - "1973": 0.02151129693922035, - "1997": 0.022187067602694923, - "2000": 0.021446049858752918, - "2018": 0.02192738789977543 - }, - "entropy": 3.8709144057964737, - "value": "1997" - }, - "GRI Lineage Level 0": { - "value": "not assigned" - }, - "GRI Lineage Level 1": { - "value": "not assigned" - }, - "GRI Lineage Level 2": { - "value": "not assigned" - }, - "GRI Lineage Level 3": { - "value": "not assigned" - }, - "GRI Lineage Level 4": { - "value": "not assigned" - }, - "GRI Lineage Level 5": { - "value": "not assigned" - } - } - } -} diff --git a/auspice/veev_root-sequence.json b/auspice/veev_root-sequence.json deleted file mode 100644 index 2452826..0000000 --- a/auspice/veev_root-sequence.json +++ /dev/null @@ -1,12 +0,0 @@ -{ - "6k": "ETTWESLDHLWNNNQQMFWIQLLIPLAALIVVTRLLKCVCCVVPFLVVAGAAGAGA", - "CP": "MFPYQPMYPMQPMPYRNPFAAPRRPWFPRTDPFLAMQVQELARSMANLTFKQRRDAPPEGPPAKKKKREAPQKENRGQNGKKKKNQGKKKKKTGPPHPKEQNGNKKKANKKPGKRQRMVMKLESDKTFPIMLDGKINGYACVVGGKLFRPMHVEGKIDNDVLAALKTKKASKYDLEYADVPQSMRADTFKYTHEKPQGYYSWHHGAVQYENGRFTVPKGVGAKGDSGRPILDNQGRVVAIVLGGVNEGSRTALSVVMWNEKGVTVKYTPENCEQW", - "E1": "YEHATTMPSQAGIPYNTIVNRAGYAPLPISITPTKIKLIPTVNLEYITCHYKTGMDSPAIKCCGTQECSPTYRPDEQCKVFTGVYPFMWGGAYCFCDTENTQVSKAYVMKSDDCLADHAQAYKAHTASVQAFLNITVGEHSTTTIVYVNGETPVNFNGVKLTAGPLSTAWTPFDRKIVQYAGEIYNYDFPEYGAGHAGAFGDIQARTISSSDLYANTNLVLQRPKAGAIHVPYTQAPSGFEQWKKDKPPSLKFTAPFGCEIYTNPIRAENCAVGSIPLAFDIPDALFTRVSETPTLSAAECTLNECVYSSDFGGIATVKYSASKSGKCAVHVPSGTATLKEAAVELAEQGSATIHFSTANIHPEFRLQICTSYVTCKGDCHPPKDHIVTHPQYHAQTFTAAVSKTAWTWLTSLLGGSAVIIIIGLVLATIVAMYVLTNQKHN", - "E2": "STEELFKEYKLTRPYMARCIRCAVGSCHSPIAIEAVKSDGHDGYVRLQTSSQYGLDSSGNLKGRTMRYDMHGTIEEIPLHQVSLHTSRPCHIIDGHGYFLLARCPAGDSITMEFKKDSVTHSCSVPYEVKFNPVGRELYTHPPEHGAEQPCQVYAHDAQNRGAYVEMHLPGSEVDSTLLSMSGSSVHVTPPAGTSVLVECECGGTKISETINTAKQFSQCTKTDQCRAYRLQNDKWVYNSDKLPKASGDTLKGKLHVPFLLAEAKCTVPLAPEPMITFGFRSVSLKLHPKNPTYLTTRQLDGEPHYTHELISEPAVRNFTVTEKGWEFVWGNHPPQRFWAQETAPGNPHGLPHEVITHYYHRYPMSTILGLSICAAIVTISVAASTWLFCKSRVSCLTPYRLTPNARMPLCLAVLCCARTARA", - "E3": "SLVTTMCLLANVTFPCSQPPICYDRKPAETLAMLSVNVDNPGYDELLEAVLKCPGRKKR", - "nsP1": "MEKVHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPSDTILDIGSAPARRMYSKHKYHCICPMKCAEDPDRLYKYAAKLKKNCKEITDKELDKKMKELAAVMSDPDLETETICLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGFDTTPFMFKNLAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPSNNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGLYGKPSGYAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADDAQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPLGLRDRQLVMGCCWAFRKHKITSVYKRPDTQTIIKVNSDFHSFVLPRIGSSTLEIGLRTRIRKLLEEHKEPSPLITAEDIQEAKNAADEAKEVKEAEELRAALPPLAADVEEPTLEADVDLMLQEAGA", - "nsP2": "GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLSCIHPLAEQVIVITHSGRKGRYAVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKTVKPSEHDGEYLYDIDKKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIEIDTTGSTKPKKDDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRIVWKTLAGDPWIKTLTAKYPGDFTATIEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAKALVPVLKTAGIDLTTEQWNTVDYFKTDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLVPVNRRLPHALVTHHTEHPHSDFSAFVSKLKGRTVLVVGEKMTVPGKTVDWLSERPEATFRARLDLGIPGELPKYDIVFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKVSLEETEVLFVFIGYDRKARTHNPYKLSSTLTNIYTGSRLHEAGC", - "nsP3": "APSYHVVRGDIATATEGVIINAANSKGQPGGGVCGALYKKFPESFDLQPIEVGKARLVKGAAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYRSVAIPLLSTGIFAGNKDRLMQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEVVARREAVEEICISEDSSVTEPDAELVRVHPKSSLAGRKGYSTSDGKTFSYLEGTKFHQAAKDMAEINAMWPIATEANEQVCLYILGESMSSIRSKCPVEESEASTPPSTLPCLCIHAMTPERVQRLKASRPEQITVCSSFPLPKYRITGVQKIQCSHPILFSPKVPEYIHPRKYLAETPPVEETPEPPAENQSTEETPEQTALATVDATRARTPEPIIIEEEEEDSISMLSEGPTHQVHQVEADVHGPPSVFSSSWSIPHASDFDVDSLSVLDTLEGASITSKAASAETNSYFAKSLEFLARPVPAPRTVFRNPPVPKPRTRTPSHAPSRASSRTSLVSTPPGVNRVITREELEALTPSRAPSRSASRSSLVSNPPGVNRVITREEFEAFVAQQQ*RFDAGA", - "nsP4": "YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLEKEELLRKKLQLNPTQANRSRYQSRRVENMKAITTRRILQGLGHYLKAEGKVECYRTLHPVPLYSASVNRAFSSPKVAVEACNAVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEPTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETYKENPIRLTEENVVNYITKLKGPKAAALYAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTKHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHFQPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTKFKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMADRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADDEHDDDRRRALHEESTRWNRVGIFPELCKAVESRYETVGTSIIIMAMTTLASSVESFSYLRGAPITLY", - "nuc": "ATGGGCGGCGCATGAGAGAAGCCCAAACCAATAACCTACCCAAAATGGAGAAAGTTCACGTTGACATCGAGGAAGACAGCCCCTTCCTCAGAGCTTTGCAACGGAGCTTCCCGCAGTTTGAGGTAGAAGCCAAGCAGGTCACTGATAATGACCATGCTAATGCCAGAGCGTTTTCGCATCTGGCTTCAAAACTGATCGAAACGGAGGTGGAACCATCCGATACGATCCTAGACATTGGAAGTGCGCCCGCCCGCAGAATGTATTCTAAGCATAAGTATCATTGCATCTGTCCGATGAAATGTGCGGAAGATCCGGACAGATTGTACAAGTATGCAGCTAAGCTGAAGAAAAACTGCAAGGAAATCACAGACAAGGAATTGGACAAGAAGATGAAGGAGCTCGCAGCCGTCATGAGCGACCCTGACCTGGAAACTGAGACTATTTGCCTCCACGACGACGAGTCGTGTCGCTATGAAGGGCAAGTCGCTGTTTACCAGGATGTATACGCAGTTGACGGACCGACAAGTCTTTATCACCAAGCCAACAAGGGAGTTAGAGTCGCCTACTGGATAGGCTTTGACACCACCCCTTTTATGTTTAAGAACTTGGCTGGAGCATATCCATCCTACTCTACCAACTGGGCCGACGAGACCGTGTTAACGGCTCGTAACATAGGCCTATGCAGCTCCGACGTTATGGAGCGGTCACGTAGAGGGATGTCCATCCTTAGGAAGAAATATTTAAAACCATCCAATAATGTCCTATTCTCTGTGGGCTCTACCATCTACCACGAGAAGAGGGACTTACTGAGGAGCTGGCACCTACCGTCTGTATTTCACTTACGTGGCAAGCAAAATTACACATGTCGGTGTGAGACTATAGTTAGTTGCGACGGGTACGTCGTTAAAAGAATAGCTATCAGTCCAGGCCTGTACGGGAAACCGTCAGGCTATGCTGCCACGATGCACCGCGAGGGATTCTTGTGCTGCAAAGTGACAGACACACTTAACGGGGAGAGGGTCTCTTTTCCCGTGTGCACGTATGTGCCAGCTACATTGTGCGACCAAATGACTGGCATACTGGCAACAGATGTCAGTGCGGACGACGCGCAAAAATTGCTGGTTGGGCTCAACCAGCGCATAGTCGTGAACGGTCGCACCCAAAGAAATACCAATACCATGAAGAATTATCTATTACCCGTAGTGGCCCAGGCATTTGCCAGGTGGGCAAAAGAATATAAGGAAGATCAAGAAGATGAAAGACCACTGGGACTAAGAGATCGACAGTTGGTAATGGGGTGCTGCTGGGCTTTTAGGAAGCACAAGATAACATCTGTGTATAAACGCCCAGATACCCAAACCATCATCAAAGTGAACAGCGATTTCCACTCTTTCGTGCTGCCCAGAATAGGCAGTAGCACATTGGAGATCGGGCTGAGAACCAGAATCAGGAAATTGCTGGAAGAGCACAAGGAACCATCACCTCTGATTACTGCCGAAGACATACAAGAGGCTAAGAACGCAGCCGATGAGGCTAAGGAGGTCAAGGAGGCCGAGGAGTTGCGCGCAGCATTACCACCTTTGGCTGCTGATGTTGAGGAACCCACTCTGGAAGCCGATGTCGACTTGATGTTGCAAGAGGCTGGGGCAGGCTCCGTAGAGACACCTCGGGGGTTGATCAAAGTCACCAGCTATGCCGGCGAGGACAAAATCGGCTCCTACGCAGTGCTTTCTCCACAAGCTGTACTCCGGAGTGAGAAACTATCTTGCATTCACCCACTCGCTGAGCAAGTCATCGTGATCACACACTCTGGCAGAAAAGGGCGTTATGCCGTGGAGCCCTACCATGGAAAAGTAGTGGTGCCTGAGGGGCATGCAATACCCGTCCAGGACTTTCAAGCACTCAGTGAGAGTGCCACCATTGTGTACAACGAACGAGAGTTCGTGAACAGGTACCTGCACCATATTGCCACACATGGAGGAGCGCTGAACACAGATGAAGAGTATTACAAAACGGTCAAGCCCAGCGAACATGACGGCGAATACCTGTATGACATCGACAAGAAACAGTGCGTCAAGAAAGAACTAGTCACTGGGCTAGGGCTGACAGGCGAGCTGGTGGATCCTCCCTTCCATGAATTCGCGTACGAGAGCCTGAGAACACGACCGGCCGCACCTTACCAAGTACCAACCATAGGGGTGTATGGCGTGCCAGGATCAGGCAAGTCTGGCATCATTAAAAGCGCAGTCACCAAAAAAGATCTGGTGGTGAGCGCCAAGAAAGAGAACTGCGCAGAAATAATAAGGGACGTCAAGAAAATGAAAGGGCTGGACGTCAATGCCCGAACTGTGGACTCAGTGCTGTTGAATGGATGCAAACACCCAGTTGAGACCCTGTACATTGACGAAGCTTTTGCATGTCATGCAGGCACTCTCAGAGCGTTGATAGCCATCATAAGACCTAAGAAGGCAGTGCTATGCGGGGATCCAAAACAGTGCGGCTTCTTCAATATGATGTGCCTGAAAGTGCATTTTAACCATGAAATTTGCACGCAGGTCTTCCACAAAAGCATCTCTCGTAGGTGCACTAAATCTGTGACTTCGGTCGTGTCCACCCTGTTTTACGACAAAAGAATGAGAACCACCAACCCGAAAGAGACTAAGATTGAAATTGACACTACTGGCAGTACCAAACCAAAGAAGGACGATCTCATTCTCACTTGTTTCAGAGGGTGGGTAAAGCAGCTGCAAATAGATTACAAAGGCAATGAAATAATGACGGCAGCTGCCTCTCAAGGACTGACCCGGAAAGGCGTCTATGCCGTTAGGTACAAGGTGAATGAGAATCCCCTGTACGCACCCACCTCAGAACATGTGAATGTCCTGCTGACCCGCACGGAGGACCGGATCGTGTGGAAAACTCTAGCAGGCGACCCATGGATAAAAACCCTGACGGCCAAGTATCCTGGAGATTTCACTGCCACGATAGAAGAATGGCAAGCAGAGCATGATGCCATCATGAGGCACATCTTGGAGAAACCGGACCCTACCGACGTCTTCCAGAATAAAGCGAACGTGTGTTGGGCCAAGGCTTTAGTGCCTGTACTGAAGACTGCCGGCATAGACTTGACCACAGAACAATGGAACACTGTGGATTATTTCAAAACGGACAAGGCTCACTCAGCAGAGATAGTATTGAACCAACTGTGCGTGCGGTTCTTTGGACTAGACTTGGACTCAGGTCTATTTTCTGCACCCACAGTTCCGTTATCCATTAGGAATAATCACTGGGACAATTCCCCGTCACCTAACATGTACGGGCTGAACAAAGAAGTGGTCCGGCAGCTCTCCCGCAGGTACCCACAACTGCCTCGAGCAGTGGCCACTGGAAGAGTCTATGACATGAACACTGGCACACTGCGCAATTATGATCCGCGCATAAATCTAGTACCTGTGAACAGAAGACTACCTCATGCTTTAGTCACCCACCATACTGAACACCCACATAGTGACTTTTCTGCATTCGTCAGCAAACTGAAGGGCAGAACTGTCCTGGTGGTCGGGGAGAAGATGACCGTCCCAGGCAAGACGGTTGACTGGTTGTCCGAACGGCCTGAGGCTACCTTCAGAGCTCGCCTGGATTTAGGTATCCCAGGTGAACTGCCCAAATACGACATCGTATTTGTTAATGTGAGGACACCATATAAATACCATCATTATCAGCAGTGTGAAGACCACGCCATTAAGCTTAGCATGTTGACCAAGAAAGCTTGTCTGCACCTAAATCCCGGCGGAACCTGCGTCAGCATAGGTTACGGTTACGCAGACAGGGCCAGCGAAAGCATCATTGGTGCAATAGCGCGGCAGTTCAAGTTCTCCCGGGTGTGCAAACCGAAAGTATCACTGGAAGAGACAGAAGTGCTGTTTGTATTCATTGGGTACGATCGCAAGGCCCGTACCCACAATCCTTACAAGCTTTCCTCTACCTTGACCAACATCTATACAGGTTCCAGACTCCACGAAGCCGGATGCGCACCCTCATATCATGTGGTGCGAGGGGACATTGCCACTGCCACGGAAGGAGTGATCATCAATGCTGCTAACAGCAAAGGACAACCAGGCGGAGGGGTGTGCGGAGCTCTGTATAAGAAATTCCCGGAAAGCTTCGATTTACAGCCAATCGAAGTGGGAAAAGCGCGACTGGTCAAAGGTGCAGCAAAACATATCATTCATGCAGTGGGGCCCAACTTCAACAAAGTGTCAGAAGTGGAAGGTGACAAACAGCTGGCAGAGGCGTATGAGTCCATCGCTAAAATTGTCAATGATAACAATTACAGATCAGTGGCGATTCCGCTGCTGTCCACCGGCATATTTGCCGGGAACAAAGATCGACTAATGCAATCATTAAACCATTTGCTGACAGCTTTGGACACCACTGATGCAGATGTGGCCATATACTGCAGAGACAAGAAATGGGAAATGACTCTCAAGGAAGTAGTGGCTAGGAGAGAAGCAGTGGAGGAGATATGCATATCCGAAGACTCTTCCGTGACAGAACCGGATGCAGAGCTGGTTAGGGTGCATCCGAAGAGCTCTTTGGCTGGAAGGAAAGGCTACAGCACAAGTGATGGAAAGACTTTCTCATATCTGGAAGGGACCAAATTTCACCAGGCGGCGAAGGATATGGCAGAAATTAACGCCATGTGGCCTATTGCAACGGAGGCTAATGAGCAAGTATGCTTGTATATCCTGGGAGAAAGCATGAGCAGCATTAGGTCTAAATGCCCCGTCGAAGAGTCGGAAGCATCCACACCACCTAGCACACTGCCTTGCTTGTGCATCCATGCTATGACTCCAGAACGAGTACAGCGCCTAAAAGCCTCACGTCCAGAACAAATTACAGTGTGCTCATCCTTTCCATTGCCGAAGTACAGAATCACTGGTGTGCAGAAGATCCAATGCTCCCACCCTATACTGTTCTCTCCGAAGGTGCCTGAGTACATTCATCCTCGGAAGTACCTCGCGGAAACACCACCGGTAGAAGAGACTCCGGAGCCGCCGGCAGAGAACCAATCCACAGAGGAGACACCTGAACAAACAGCACTTGCAACCGTAGATGCAACAAGGGCTAGAACACCTGAACCGATCATCATTGAAGAGGAAGAAGAAGACAGTATAAGTATGCTGTCAGAAGGCCCGACGCACCAAGTGCACCAAGTGGAGGCAGACGTACACGGACCTCCTTCGGTATTCAGCTCATCCTGGTCCATTCCACATGCATCCGACTTTGATGTGGACAGTTTATCCGTGCTTGACACCCTGGAGGGAGCTAGCATAACCAGCAAGGCAGCGTCAGCAGAGACTAACTCTTACTTCGCAAAGAGCTTGGAGTTTCTGGCGAGACCTGTGCCTGCACCTCGAACCGTTTTCAGGAACCCACCTGTTCCGAAACCGCGCACAAGGACGCCGTCGCATGCACCAAGCAGGGCCAGCTCGAGAACTAGCCTAGTGTCCACCCCGCCAGGCGTGAATAGGGTGATTACTAGAGAGGAGCTCGAGGCGCTTACACCGTCACGCGCTCCTAGCAGGTCGGCCTCAAGATCTAGCCTGGTGTCTAACCCGCCAGGCGTAAATAGGGTGATCACCAGGGAGGAGTTTGAGGCCTTCGTCGCACAACAGCAATGACGGTTTGACGCGGGTGCATACATCTTTTCCTCCGATACCGGTCAAGGGCATTTACAACAAAAATCAGTAAGGCAAACAGTGTTATCTGAAGTGGTGTTGGAGAGGACCGAATTGGAGATTTCGTATGCCCCGCGCCTCGACCTAGAAAAAGAAGAACTACTACGCAAGAAATTACAACTGAACCCCACACAAGCTAACAGAAGCAGATACCAGTCCAGGAGGGTGGAGAACATGAAAGCCATAACAACTAGAAGAATTCTGCAAGGCCTAGGGCATTATTTGAAAGCTGAAGGAAAAGTGGAGTGCTATCGCACCTTGCACCCTGTTCCTTTGTATTCAGCTAGTGTGAACCGAGCGTTTTCAAGCCCCAAGGTCGCAGTGGAAGCCTGCAACGCGGTGCTGAAAGAAAACTTTCCGACTGTGGCTTCGTACTGTATAATTCCAGAGTACGACGCCTACCTGGACATGGTGGACGGCGCTTCTTGTTGCTTAGACACTGCCAGTTTTTGCCCTGCAAAGCTGCGCAGCTTTCCAAAGAAACACTCATATTTGGAACCCACCATTCGGTCGGCAGTGCCATCAGCGATTCAGAACACGCTGCAGAACGTACTGGCAGCTGCCACAAAAAGAAACTGCAATGTCACGCAAATGAGAGAACTGCCCGTATTGGATTCCGCTGCCTTTAATGTAGAGTGCTTCAAGAAATATGCGTGCAATAATGAATATTGGGAAACGTACAAAGAAAACCCCATCAGATTAACTGAAGAAAATGTGGTTAATTACATTACTAAATTAAAAGGACCGAAAGCGGCTGCTCTGTATGCAAAGACTCATAATTTGAACATGCTACAGGACATACCCATGGACAGGTTTGTCATGGATTTAAAAAGGGACGTGAAAGTGACTCCAGGAACAAAACATACTGAAGAACGGCCCAAGGTACAGGTGATCCAGGCTGCCGATCCGCTAGCTACAGCGTATCTGTGCGGAATCCACCGAGAGTTGGTTCGGAGATTAAATGCAGTCCTGCTTCCGAACATCCATACACTGTTTGACATGTCGGCTGAAGACTTTGACGCTATTATTGCCGAGCATTTCCAACCTGGGGACTGTGTTCTGGAAACTGACATTGCGTCGTTCGATAAAAGCGAGGACGACGCGATGGCTCTGACGGCACTAATGATTCTGGAAGATCTAGGTGTGGACCCAGAGCTGTTGACGCTAATTGAAGCGGCTTTTGGCGAAATTTCATCAATCCACTTACCCACCAAAACTAAATTTAAATTCGGAGCCATGATGAAATCCGGAATGTTCCTCACCCTGTTTGTGAACACAGTCATCAACATCGTCATCGCAAGCAGAGTGTTACGAGAGCGGCTGACCAACTCACCATGTGCAGCATTCATTGGAGATGACAATATCGTGAAAGGAGTCAAATCGGACAAATTAATGGCCGACAGGTGCGCCACATGGTTGAACATGGAAGTCAAGATCATAGATGCCGTGGTCGGCGAGAAAGCGCCCTATTTCTGTGGAGGGTTTATTCTGTGTGACTCCGTGACCGGCACAGCATGCCGTGTGGCAGACCCCCTAAAAAGGCTGTTTAAGCTTGGAAAACCACTGGCAGCAGACGATGAACATGACGATGACAGGAGACGAGCATTACACGAGGAGTCAACACGCTGGAACCGAGTGGGAATTTTTCCAGAGCTGTGTAAGGCAGTAGAATCAAGGTATGAAACCGTAGGAACTTCCATCATAATTATGGCCATGACTACTCTAGCTAGCAGTGTTGAATCATTCAGCTACCTGAGAGGGGCCCCTATAACCCTCTACGGCTAACCTGAATGGACTGCGACATAGTCTAGTCCGCCAAGATGTTCCCGTACCAACCAATGTATCCAATGCAGCCAATGCCCTATCGCAACCCGTTCGCGGCTCCTCGAAGACCATGGTTCCCCAGGACCGACCCTTTTCTGGCGATGCAGGTGCAGGAGTTAGCCCGCTCTATGGCTAACCTGACGTTCAAGCAACGCCGGGACGCGCCGCCTGAGGGGCCACCCGCTAAGAAAAAGAAGAGGGAGGCCCCGCAAAAGGAAAATCGGGGACAGAATGGGAAGAAGAAGAAGAACCAGGGGAAGAAGAAGAAGAAGACGGGGCCGCCTCATCCGAAGGAACAGAATGGCAACAAGAAGAAGGCCAACAAGAAACCAGGAAAGAGACAGCGCATGGTCATGAAATTGGAATCTGACAAGACATTCCCTATTATGCTGGACGGAAAAATTAACGGCTACGCTTGCGTGGTCGGAGGGAAGTTATTCAGGCCGATGCATGTGGAAGGCAAGATCGACAACGACGTTCTGGCCGCCCTTAAGACGAAGAAGGCATCCAAATATGATCTGGAGTACGCAGATGTGCCACAGAGCATGCGGGCAGATACATTCAAATACACCCATGAGAAACCCCAAGGCTATTACAGCTGGCACCATGGAGCAGTCCAGTATGAAAATGGGAGGTTCACGGTGCCAAAAGGAGTTGGGGCCAAAGGAGATAGCGGCCGACCCATACTGGATAACCAAGGACGGGTGGTCGCTATTGTGCTGGGAGGTGTGAATGAAGGATCTAGAACAGCCCTGTCCGTCGTCATGTGGAACGAGAAAGGGGTTACTGTGAAGTATACTCCTGAGAACTGCGAGCAATGGTCACTAGTGACCACCATGTGCCTGCTCGCCAATGTCACGTTCCCATGTTCCCAACCACCAATTTGCTACGACCGCAAACCAGCAGAGACTTTGGCCATGCTCAGCGTTAACGTTGACAACCCGGGCTACGATGAGCTGCTGGAAGCAGTTCTGAAGTGCCCCGGCAGAAAAAAGAGATCTACGGAGGAGCTGTTTAAGGAGTATAAGCTAACGCGCCCGTACATGGCCAGGTGCATCAGGTGTGCCGTTGGGAGCTGCCATAGCCCTATAGCCATTGAGGCGGTGAAGAGCGACGGGCACGACGGCTATGTTCGACTTCAGACTTCCTCGCAGTATGGCCTGGACTCCTCTGGAAACTTAAAGGGCAGAACCATGAGGTATGACATGCACGGGACCATTGAAGAGATACCGCTACATCAAGTGTCACTCCACACATCTCGCCCCTGTCACATTATAGATGGGCATGGTTACTTTCTGCTTGCTAGGTGCCCAGCAGGGGACTCCATCACCATGGAATTTAAGAAAGATTCAGTCACACACTCCTGCTCAGTGCCCTATGAAGTGAAATTTAATCCTGTAGGCAGAGAACTGTACACTCATCCCCCAGAACACGGAGCAGAGCAACCGTGCCAAGTGTACGCACATGATGCACAGAACAGAGGAGCTTATGTCGAAATGCACCTCCCGGGCTCCGAAGTGGACAGCACTTTGCTTTCCATGAGCGGCAGTTCAGTCCACGTGACACCTCCTGCTGGGACAAGCGTCCTGGTGGAATGCGAGTGCGGCGGCACAAAGATCTCCGAGACCATCAACACGGCAAAACAGTTCAGCCAGTGCACAAAGACAGATCAGTGCAGGGCATACCGACTGCAGAATGACAAATGGGTGTATAATTCTGACAAACTGCCCAAAGCATCGGGAGACACCCTAAAAGGAAAACTGCATGTACCATTCTTGCTGGCAGAAGCCAAATGCACAGTGCCTCTAGCACCAGAACCTATGATAACCTTCGGTTTCCGATCAGTGTCTCTGAAACTGCACCCTAAGAATCCCACCTATCTGACCACTCGCCAACTGGATGGTGAACCACATTACACCCACGAGCTCATATCTGAACCCGCTGTTAGGAATTTTACCGTCACAGAAAAAGGGTGGGAGTTTGTGTGGGGAAACCACCCGCCGCAAAGGTTTTGGGCACAGGAAACAGCACCCGGAAATCCACATGGGCTGCCGCACGAGGTGATCACTCATTATTACCACAGATACCCTATGTCCACCATCCTGGGTTTGTCAATTTGCGCCGCAATTGTGACCATTTCCGTTGCAGCGTCCACCTGGCTGTTTTGCAAATCCCGAGTTTCGTGCCTAACTCCTTACCGGCTGACCCCGAACGCCCGGATGCCTCTGTGCCTGGCAGTGCTTTGCTGCGCGCGCACTGCCAGGGCCGAAACCACCTGGGAATCCCTGGATCACCTATGGAACAATAACCAGCAGATGTTCTGGATTCAATTGCTGATCCCTCTGGCCGCCTTGATTGTAGTGACTCGCCTGCTGAAGTGCGTGTGTTGTGTCGTGCCTTTTTTAGTCGTGGCCGGCGCCGCAGGCGCCGGCGCCTACGAGCACGCGACCACGATGCCGAGCCAAGCGGGAATCCCGTATAACACCATAGTCAACAGAGCAGGCTACGCACCACTACCTATCAGCATAACACCAACCAAGATCAAGCTGATTCCCACAGTGAACTTGGAGTACATCACATGCCACTACAAAACAGGAATGGATTCACCCGCCATCAAATGCTGCGGAACGCAGGAATGTTCTCCAACTTACAGGCCTGATGAACAGTGCAAAGTCTTCACAGGAGTGTACCCGTTCATGTGGGGAGGTGCATATTGCTTTTGCGACACAGAGAACACCCAGGTGAGCAAGGCGTATGTAATGAAATCTGACGACTGCCTTGCGGATCACGCTCAGGCATACAAAGCGCACACAGCCTCAGTCCAGGCCTTCCTCAACATCACAGTGGGAGAACACTCAACTACAACAATCGTGTATGTGAATGGAGAAACTCCTGTCAACTTCAATGGAGTCAAATTAACTGCAGGTCCACTTTCCACAGCTTGGACACCCTTTGACCGCAAAATCGTGCAGTATGCCGGGGAGATCTATAATTATGATTTTCCTGAGTATGGGGCAGGACATGCAGGAGCGTTTGGAGACATCCAAGCCAGAACAATCTCCAGCTCAGATCTGTACGCCAATACCAACCTAGTGCTGCAGAGACCCAAAGCAGGAGCGATCCATGTCCCATACACTCAGGCACCATCGGGTTTTGAGCAATGGAAGAAAGACAAACCACCGTCATTGAAATTCACCGCCCCTTTCGGGTGCGAAATTTATACAAACCCCATTCGCGCCGAAAATTGTGCTGTGGGATCAATTCCATTAGCCTTTGACATCCCCGACGCCTTGTTTACCAGGGTGTCAGAAACACCGACACTGTCAGCTGCCGAATGCACTCTGAACGAGTGCGTGTATTCATCCGACTTTGGCGGGATCGCCACGGTCAAGTATTCGGCCAGCAAGTCAGGCAAGTGCGCAGTCCATGTGCCATCAGGCACTGCTACCCTGAAAGAAGCAGCAGTCGAGCTGGCCGAGCAAGGGTCGGCGACCATACATTTCTCGACCGCAAATATCCACCCGGAGTTCAGGCTCCAAATATGCACATCTTATGTCACGTGCAAAGGTGATTGTCACCCCCCGAAAGACCACATTGTGACACACCCCCAGTACCACGCCCAGACATTTACAGCCGCGGTGTCAAAAACCGCGTGGACGTGGTTAACATCCCTGCTGGGAGGGTCAGCCGTAATTATTATAATTGGCTTAGTGTTGGCTACTATTGTGGCTATGTACGTGCTGACCAACCAGAAACATAATTAAACATAGCAGCAATTGGCAAGCTGCTTATATAGAACTCGCGGCAATTGGCAAGCCGCTTTAAAATTTTATTTTATTTTCTTTTCTTTACCCAATCGGATTTTGTTTTTAATATTTC" -} \ No newline at end of file