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# VEEVnext: Molecular epidemiology of Venezuelan equine encephalitis virus | ||
# VEEnext: Molecular epidemiology of Venezuelan equine encephalitis (VEE) complex viruses | ||
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Michael T. Wolfinger<sup>1,2</sup>, Adriano de Bernardi Schneider<sup>3</sup>, Jakob McBroome<sup>3</sup> | ||
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<sub><sup>1</sup>Department of Theoretical Chemistry, University of Vienna, Vienna, Austria</sub><br/> | ||
<sub><sup>2</sup>Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria</sub><br/> | ||
<sup><sup>3</sup>Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, United States</sub><br/> | ||
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This repository contains a [nextstrain](https://nextstrain.org) community build of Venezuelan equine encephalitis virus (VEEV) that is accessible [here](https://nextstrain.org/groups/ViennaRNA/VEEVnext). Alternatively, you can drag & drop the [VEEV.json](auspice/veev.json) file directly at [auspice.us](https://auspice.us). | ||
This repository contains a [nextstrain](https://nextstrain.org) community build of the Venezuelan equine encephalitis (VEE) serocomplex viruses that is accessible [here](https://nextstrain.org/groups/ViennaRNA/VEEnext). Alternatively, you can drag & drop the [VEE.json](auspice/VEE.json) file directly at [auspice.us](https://auspice.us). | ||
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Data in this community build rely on publicly available VEEV genomes from NCBI Genbank. New releases are published on an irregular basis when a reasonable amount of novel sequences are available. | ||
Data in this community build rely on publicly available VEE genomes from NCBI Genbank. New releases are published on an irregular basis when a reasonable amount of novel sequences are available. | ||
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Automated lineage designations were performed by using [AUTOLIN](https://jmcbroome-automated-lineage-json-streamlit-app-3adskh.streamlit.app/) under default settings. | ||
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## Citation | ||
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We're currently preparing the VEEnext manuscript: | ||
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**Molecular epidemiology of Venezuelan equine encephalitis complex viruses** | ||
_Adriano de Bernardi Schneider and Michael T. Wolfinger_ | ||
2023 (Manuscript in preparation) | ||
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If you use data provided in this repository in your own work please link back to this site - Thank you! |