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# VEEVnext: Molecular epidemiology of Venezuelan equine encephalitis virus
# VEEnext: Molecular epidemiology of Venezuelan equine encephalitis (VEE) complex viruses

Michael T. Wolfinger<sup>1,2</sup>, Adriano de Bernardi Schneider<sup>3</sup>, Jakob McBroome<sup>3</sup>

<sub><sup>1</sup>Department of Theoretical Chemistry, University of Vienna, Vienna, Austria</sub><br/>
<sub><sup>2</sup>Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria</sub><br/>
<sup><sup>3</sup>Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, United States</sub><br/>

This repository contains a [nextstrain](https://nextstrain.org) community build of Venezuelan equine encephalitis virus (VEEV) that is accessible [here](https://nextstrain.org/groups/ViennaRNA/VEEVnext). Alternatively, you can drag & drop the [VEEV.json](auspice/veev.json) file directly at [auspice.us](https://auspice.us).
This repository contains a [nextstrain](https://nextstrain.org) community build of the Venezuelan equine encephalitis (VEE) serocomplex viruses that is accessible [here](https://nextstrain.org/groups/ViennaRNA/VEEnext). Alternatively, you can drag & drop the [VEE.json](auspice/VEE.json) file directly at [auspice.us](https://auspice.us).

Data in this community build rely on publicly available VEEV genomes from NCBI Genbank. New releases are published on an irregular basis when a reasonable amount of novel sequences are available.
Data in this community build rely on publicly available VEE genomes from NCBI Genbank. New releases are published on an irregular basis when a reasonable amount of novel sequences are available.

Automated lineage designations were performed by using [AUTOLIN](https://jmcbroome-automated-lineage-json-streamlit-app-3adskh.streamlit.app/) under default settings.

## Citation

We're currently preparing the VEEnext manuscript:

**Molecular epidemiology of Venezuelan equine encephalitis complex viruses**
_Adriano de Bernardi Schneider and Michael T. Wolfinger_
2023 (Manuscript in preparation)

If you use data provided in this repository in your own work please link back to this site - Thank you!

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