From c06a8d0e3f9a962d1c062ea37a917554aed1db1c Mon Sep 17 00:00:00 2001
From: "Michael T. Wolfinger" <michael@wolfinger.eu>
Date: Fri, 6 Jan 2023 20:46:26 +0100
Subject: [PATCH] Update README.md

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 README.md | 13 ++++++++++---
 1 file changed, 10 insertions(+), 3 deletions(-)

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-# VEEVnext: Molecular epidemiology of Venezuelan equine encephalitis virus
+# VEEnext: Molecular epidemiology of Venezuelan equine encephalitis (VEE) complex viruses
 
 Michael T. Wolfinger<sup>1,2</sup>, Adriano de Bernardi Schneider<sup>3</sup>, Jakob McBroome<sup>3</sup>
 
@@ -6,11 +6,18 @@ Michael T. Wolfinger<sup>1,2</sup>, Adriano de Bernardi Schneider<sup>3</sup>, J
 <sub><sup>2</sup>Research Group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria</sub><br/>
 <sup><sup>3</sup>Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, United States</sub><br/>
 
-This repository contains a [nextstrain](https://nextstrain.org) community build of Venezuelan equine encephalitis virus (VEEV) that is accessible [here](https://nextstrain.org/groups/ViennaRNA/VEEVnext). Alternatively, you can drag & drop the [VEEV.json](auspice/veev.json) file directly at [auspice.us](https://auspice.us).
+This repository contains a [nextstrain](https://nextstrain.org) community build of the Venezuelan equine encephalitis (VEE) serocomplex viruses that is accessible [here](https://nextstrain.org/groups/ViennaRNA/VEEnext). Alternatively, you can drag & drop the [VEE.json](auspice/VEE.json) file directly at [auspice.us](https://auspice.us).
 
-Data in this community build rely on publicly available VEEV genomes from NCBI Genbank. New releases are published on an irregular basis when a reasonable amount of novel sequences are available.
+Data in this community build rely on publicly available VEE genomes from NCBI Genbank. New releases are published on an irregular basis when a reasonable amount of novel sequences are available.
 
 Automated lineage designations were performed by using [AUTOLIN](https://jmcbroome-automated-lineage-json-streamlit-app-3adskh.streamlit.app/) under default settings. 
 
 ## Citation
+
+We're currently preparing the VEEnext manuscript:
+
+**Molecular epidemiology of Venezuelan equine encephalitis complex viruses**  
+_Adriano de Bernardi Schneider and Michael T. Wolfinger_  
+2023 (Manuscript in preparation)
+
 If you use data provided in this repository in your own work please link back to this site - Thank you!