From 6d99e6fd4bf627123568c9a6f44d71651c360773 Mon Sep 17 00:00:00 2001 From: Clare72 Date: Mon, 26 Feb 2024 12:33:09 +0000 Subject: [PATCH] release files 2024-02-26 --- imports/merged_import.owl | 36 ++-- src/ontology/imports/merged_import.owl | 36 ++-- vfbext-base.json | 6 +- vfbext-base.obo | 6 +- vfbext-base.owl | 6 +- vfbext-full.json | 6 +- vfbext-full.obo | 6 +- vfbext-full.owl | 282 ++++++++++++------------- vfbext-non-classified.json | 6 +- vfbext-non-classified.obo | 6 +- vfbext-non-classified.owl | 282 ++++++++++++------------- vfbext-simple.json | 6 +- vfbext-simple.obo | 6 +- vfbext-simple.owl | 6 +- vfbext.json | 6 +- vfbext.obo | 4 +- vfbext.owl | 280 ++++++++++++------------ 17 files changed, 475 insertions(+), 511 deletions(-) diff --git a/imports/merged_import.owl b/imports/merged_import.owl index 25e300f..55527c4 100644 --- a/imports/merged_import.owl +++ b/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-12-19") + +Annotation(owl:versionInfo "2024-02-26") Declaration(Class()) Declaration(Class()) @@ -2250,30 +2250,30 @@ SubObjectPropertyOf(ObjectPropertyChain( ) ) SubObjectPropertyOf(ObjectPropertyChain( ) ) SubObjectPropertyOf(ObjectPropertyChain( ) ) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Annotation( "true"^^xsd:boolean) Annotation(rdfs:comment "MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z") Annotation(rdfs:label "infer input from direct reg") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Annotation(rdfs:comment "GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), -e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'") Annotation(rdfs:label "enabling an MF enables its parts") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation( "true"^^xsd:boolean) Annotation(rdfs:comment "GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'") Annotation(rdfs:label "involved in BP") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.") Annotation(rdfs:label "inferring direct reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "inferring direct neg reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "inferring direct positive reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "effector input is compound function input") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "Input of effector is input of its parent MF") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "if effector directly regulates X, its parent MF directly regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "if effector directly positively regulates X, its parent MF directly positively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "if effector directly negatively regulates X, its parent MF directly negatively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) -DLSafeRule(Annotation(rdfs:label "'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) +e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'") Annotation(rdfs:label "enabling an MF enables its parts") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation( "true"^^xsd:boolean) Annotation(rdfs:comment "GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'") Annotation(rdfs:label "involved in BP") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.") Annotation(rdfs:label "inferring direct reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "inferring direct neg reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "inferring direct positive reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "effector input is compound function input") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "Input of effector is input of its parent MF") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "if effector directly regulates X, its parent MF directly regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "if effector directly positively regulates X, its parent MF directly positively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "if effector directly negatively regulates X, its parent MF directly negatively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) +DLSafeRule(Annotation(rdfs:label "'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) ) \ No newline at end of file diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 25e300f..55527c4 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-12-19") + +Annotation(owl:versionInfo "2024-02-26") Declaration(Class()) Declaration(Class()) @@ -2250,30 +2250,30 @@ SubObjectPropertyOf(ObjectPropertyChain( ) ) SubObjectPropertyOf(ObjectPropertyChain( ) ) SubObjectPropertyOf(ObjectPropertyChain( ) ) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Annotation( "true"^^xsd:boolean) Annotation(rdfs:comment "MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z") Annotation(rdfs:label "infer input from direct reg") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Annotation(rdfs:comment "GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), -e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'") Annotation(rdfs:label "enabling an MF enables its parts") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation( "true"^^xsd:boolean) Annotation(rdfs:comment "GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'") Annotation(rdfs:label "involved in BP") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.") Annotation(rdfs:label "inferring direct reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "inferring direct neg reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "inferring direct positive reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "effector input is compound function input") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "Input of effector is input of its parent MF") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "if effector directly regulates X, its parent MF directly regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:comment "if effector directly positively regulates X, its parent MF directly positively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "if effector directly negatively regulates X, its parent MF directly negatively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Annotation(rdfs:label "'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) -DLSafeRule(Annotation(rdfs:label "'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) +e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'") Annotation(rdfs:label "enabling an MF enables its parts") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation( "true"^^xsd:boolean) Annotation(rdfs:comment "GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'") Annotation(rdfs:label "involved in BP") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.") Annotation(rdfs:label "inferring direct reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "inferring direct neg reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "inferring direct positive reg edge from input to regulatory subfunction") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "effector input is compound function input") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "Input of effector is input of its parent MF") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "if effector directly regulates X, its parent MF directly regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:comment "if effector directly positively regulates X, its parent MF directly positively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "if effector directly negatively regulates X, its parent MF directly negatively regulates X") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Annotation(rdfs:label "'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) +DLSafeRule(Annotation(rdfs:label "'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable()))) DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) -DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) ) \ No newline at end of file diff --git a/vfbext-base.json b/vfbext-base.json index 95e3755..e903913 100644 --- a/vfbext-base.json +++ b/vfbext-base.json @@ -16,15 +16,15 @@ "val" : "https://creativecommons.org/licenses/by/4.0/" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "19:12:2023 11:51" + "val" : "26:02:2024 12:30" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "VFB extension ontology" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-12-19" + "val" : "2024-02-26" } ], - "version" : "http://purl.obolibrary.org/obo/vfbext/releases/2023-12-19/vfbext-base.json" + "version" : "http://purl.obolibrary.org/obo/vfbext/releases/2024-02-26/vfbext-base.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/C888C3DB-AEFA-447F-BD4C-858DFE33DBE7", diff --git a/vfbext-base.obo b/vfbext-base.obo index 058d719..1c7d30a 100644 --- a/vfbext-base.obo +++ b/vfbext-base.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: vfbext/releases/2023-12-19/vfbext-base.owl -date: 19:12:2023 11:51 +data-version: vfbext/releases/2024-02-26/vfbext-base.owl +date: 26:02:2024 12:30 subsetdef: clone "" subsetdef: neuron "" subsetdef: ns_part "" @@ -12,7 +12,7 @@ property_value: http://purl.org/dc/elements/1.1/description "An ontology of misc property_value: http://purl.org/dc/elements/1.1/title "VFB Extension Ontology" xsd:string property_value: http://purl.org/dc/elements/1.1/type IAO:8000001 property_value: http://purl.org/dc/terms/license "https://creativecommons.org/licenses/by/4.0/" xsd:string -property_value: owl:versionInfo "2023-12-19" xsd:string +property_value: owl:versionInfo "2024-02-26" xsd:string [Term] id: SO:0000110 diff --git a/vfbext-base.owl b/vfbext-base.owl index f7888c3..857dc38 100644 --- a/vfbext-base.owl +++ b/vfbext-base.owl @@ -13,14 +13,14 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + An ontology of miscellaneous terms for data annotation in VFB. VFB Extension Ontology https://creativecommons.org/licenses/by/4.0/</terms:license> - 19:12:2023 11:51 + 26:02:2024 12:30 VFB extension ontology - 2023-12-19 + 2024-02-26 diff --git a/vfbext-full.json b/vfbext-full.json index ea2301a..d74baae 100644 --- a/vfbext-full.json +++ b/vfbext-full.json @@ -13,15 +13,15 @@ "val" : "https://creativecommons.org/licenses/by/4.0/" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "19:12:2023 11:51" + "val" : "26:02:2024 12:30" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "VFB extension ontology" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-12-19" + "val" : "2024-02-26" } ], - "version" : "http://purl.obolibrary.org/obo/vfbext/releases/2023-12-19/vfbext-full.json" + "version" : "http://purl.obolibrary.org/obo/vfbext/releases/2024-02-26/vfbext-full.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000002", diff --git a/vfbext-full.obo b/vfbext-full.obo index af18b24..1f105b0 100644 --- a/vfbext-full.obo +++ b/vfbext-full.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: vfbext/releases/2023-12-19/vfbext-full.owl -date: 19:12:2023 11:51 +data-version: vfbext/releases/2024-02-26/vfbext-full.owl +date: 26:02:2024 12:30 subsetdef: clone "" subsetdef: core "" subsetdef: cur "" @@ -22,7 +22,7 @@ ontology: vfbext/vfbext-full property_value: http://purl.org/dc/elements/1.1/description "An ontology of miscellaneous terms for data annotation in VFB." xsd:string property_value: http://purl.org/dc/elements/1.1/title "VFB Extension Ontology" xsd:string property_value: http://purl.org/dc/terms/license "https://creativecommons.org/licenses/by/4.0/" xsd:string -property_value: owl:versionInfo "2023-12-19" xsd:string +property_value: owl:versionInfo "2024-02-26" xsd:string [Term] id: BFO:0000002 diff --git a/vfbext-full.owl b/vfbext-full.owl index 821ae68..2d39e30 100644 --- a/vfbext-full.owl +++ b/vfbext-full.owl @@ -21,13 +21,13 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + An ontology of miscellaneous terms for data annotation in VFB. VFB Extension Ontology https://creativecommons.org/licenses/by/4.0/</terms:license> - 19:12:2023 11:51 + 26:02:2024 12:30 VFB extension ontology - 2023-12-19 + 2024-02-26 @@ -4078,10 +4078,10 @@ http://sourceforge.net/p/obi/obi-terms/716/ /////////////////////////////////////////////////////////////////////////////////////// --> - + - + @@ -4099,66 +4099,54 @@ http://sourceforge.net/p/obi/obi-terms/716/ - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - - - - - - - - - @@ -4171,8 +4159,8 @@ http://sourceforge.net/p/obi/obi-terms/716/ - - + + @@ -4182,7 +4170,7 @@ http://sourceforge.net/p/obi/obi-terms/716/ - + @@ -4192,7 +4180,7 @@ http://sourceforge.net/p/obi/obi-terms/716/ - + @@ -4209,8 +4197,8 @@ http://sourceforge.net/p/obi/obi-terms/716/ - - + + @@ -4472,7 +4460,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -4482,8 +4470,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4493,8 +4481,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4511,8 +4499,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4531,7 +4519,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -4541,8 +4529,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4552,8 +4540,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4570,8 +4558,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4587,8 +4575,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4598,7 +4586,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -4608,8 +4596,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4619,8 +4607,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4639,8 +4627,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4658,8 +4646,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4669,8 +4657,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4680,8 +4668,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4698,8 +4686,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4716,8 +4704,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4727,8 +4715,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4738,8 +4726,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4756,8 +4744,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4774,8 +4762,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4785,8 +4773,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4796,8 +4784,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4814,8 +4802,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4832,8 +4820,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4843,8 +4831,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4859,8 +4847,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4877,8 +4865,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4888,8 +4876,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4904,8 +4892,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4922,8 +4910,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4933,8 +4921,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4949,8 +4937,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4967,8 +4955,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4978,8 +4966,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4994,8 +4982,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5012,8 +5000,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5023,8 +5011,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5039,8 +5027,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5057,8 +5045,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5068,8 +5056,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5084,7 +5072,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5094,7 +5082,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5113,8 +5101,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5124,8 +5112,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5140,7 +5128,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5150,7 +5138,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5212,8 +5200,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5223,8 +5211,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5239,8 +5227,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5255,9 +5243,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -5267,8 +5255,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5282,9 +5270,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -5299,9 +5287,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -5311,8 +5299,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5326,7 +5314,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + diff --git a/vfbext-non-classified.json b/vfbext-non-classified.json index de549af..cc5a9fc 100644 --- a/vfbext-non-classified.json +++ b/vfbext-non-classified.json @@ -13,15 +13,15 @@ "val" : "https://creativecommons.org/licenses/by/4.0/" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "19:12:2023 11:51" + "val" : "26:02:2024 12:30" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "VFB extension ontology" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-12-19" + "val" : "2024-02-26" } ], - "version" : "http://purl.obolibrary.org/obo/vfbext/releases/2023-12-19/vfbext-non-classified.json" + "version" : "http://purl.obolibrary.org/obo/vfbext/releases/2024-02-26/vfbext-non-classified.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000002", diff --git a/vfbext-non-classified.obo b/vfbext-non-classified.obo index a0b9a45..d7aa8ac 100644 --- a/vfbext-non-classified.obo +++ b/vfbext-non-classified.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: vfbext/releases/2023-12-19/vfbext-non-classified.owl -date: 19:12:2023 11:51 +data-version: vfbext/releases/2024-02-26/vfbext-non-classified.owl +date: 26:02:2024 12:30 subsetdef: clone "" subsetdef: core "" subsetdef: cur "" @@ -22,7 +22,7 @@ ontology: vfbext/vfbext-non-classified property_value: http://purl.org/dc/elements/1.1/description "An ontology of miscellaneous terms for data annotation in VFB." xsd:string property_value: http://purl.org/dc/elements/1.1/title "VFB Extension Ontology" xsd:string property_value: http://purl.org/dc/terms/license "https://creativecommons.org/licenses/by/4.0/" xsd:string -property_value: owl:versionInfo "2023-12-19" xsd:string +property_value: owl:versionInfo "2024-02-26" xsd:string [Term] id: BFO:0000002 diff --git a/vfbext-non-classified.owl b/vfbext-non-classified.owl index 9dca671..b7c2f13 100644 --- a/vfbext-non-classified.owl +++ b/vfbext-non-classified.owl @@ -21,13 +21,13 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + An ontology of miscellaneous terms for data annotation in VFB. VFB Extension Ontology https://creativecommons.org/licenses/by/4.0/</terms:license> - 19:12:2023 11:51 + 26:02:2024 12:30 VFB extension ontology - 2023-12-19 + 2024-02-26 @@ -4041,10 +4041,10 @@ http://sourceforge.net/p/obi/obi-terms/716/ /////////////////////////////////////////////////////////////////////////////////////// --> - + - + @@ -4062,66 +4062,54 @@ http://sourceforge.net/p/obi/obi-terms/716/ - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - - - - - - - - - @@ -4134,8 +4122,8 @@ http://sourceforge.net/p/obi/obi-terms/716/ - - + + @@ -4145,7 +4133,7 @@ http://sourceforge.net/p/obi/obi-terms/716/ - + @@ -4155,7 +4143,7 @@ http://sourceforge.net/p/obi/obi-terms/716/ - + @@ -4172,8 +4160,8 @@ http://sourceforge.net/p/obi/obi-terms/716/ - - + + @@ -4435,7 +4423,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -4445,8 +4433,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4456,8 +4444,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4474,8 +4462,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4494,7 +4482,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -4504,8 +4492,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4515,8 +4503,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4533,8 +4521,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4550,8 +4538,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4561,7 +4549,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -4571,8 +4559,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4582,8 +4570,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4602,8 +4590,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4621,8 +4609,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4632,8 +4620,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4643,8 +4631,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4661,8 +4649,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4679,8 +4667,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4690,8 +4678,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4701,8 +4689,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4719,8 +4707,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4737,8 +4725,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4748,8 +4736,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4759,8 +4747,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4777,8 +4765,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4795,8 +4783,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4806,8 +4794,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4822,8 +4810,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4840,8 +4828,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4851,8 +4839,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4867,8 +4855,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4885,8 +4873,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4896,8 +4884,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4912,8 +4900,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4930,8 +4918,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4941,8 +4929,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4957,8 +4945,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4975,8 +4963,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4986,8 +4974,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5002,8 +4990,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5020,8 +5008,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5031,8 +5019,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5047,7 +5035,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5057,7 +5045,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5076,8 +5064,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5087,8 +5075,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5103,7 +5091,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5113,7 +5101,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5175,8 +5163,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5186,8 +5174,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5202,8 +5190,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5218,9 +5206,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -5230,8 +5218,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5245,9 +5233,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -5262,9 +5250,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -5274,8 +5262,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5289,7 +5277,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + diff --git a/vfbext-simple.json b/vfbext-simple.json index 5a59ce3..454fcaf 100644 --- a/vfbext-simple.json +++ b/vfbext-simple.json @@ -13,15 +13,15 @@ "val" : "https://creativecommons.org/licenses/by/4.0/" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "19:12:2023 11:51" + "val" : "26:02:2024 12:30" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "VFB extension ontology" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-12-19" + "val" : "2024-02-26" } ], - "version" : "http://purl.obolibrary.org/obo/vfbext/releases/2023-12-19/vfbext-simple.json" + "version" : "http://purl.obolibrary.org/obo/vfbext/releases/2024-02-26/vfbext-simple.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", diff --git a/vfbext-simple.obo b/vfbext-simple.obo index 2deed87..b7c63f8 100644 --- a/vfbext-simple.obo +++ b/vfbext-simple.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: vfbext/releases/2023-12-19/vfbext-simple.owl -date: 19:12:2023 11:51 +data-version: vfbext/releases/2024-02-26/vfbext-simple.owl +date: 26:02:2024 12:30 subsetdef: clone "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" @@ -15,7 +15,7 @@ ontology: vfbext/vfbext-simple property_value: http://purl.org/dc/elements/1.1/description "An ontology of miscellaneous terms for data annotation in VFB." xsd:string property_value: http://purl.org/dc/elements/1.1/title "VFB Extension Ontology" xsd:string property_value: http://purl.org/dc/terms/license "https://creativecommons.org/licenses/by/4.0/" xsd:string -property_value: owl:versionInfo "2023-12-19" xsd:string +property_value: owl:versionInfo "2024-02-26" xsd:string [Term] id: VFB:10000005 diff --git a/vfbext-simple.owl b/vfbext-simple.owl index 0c5386a..417995f 100644 --- a/vfbext-simple.owl +++ b/vfbext-simple.owl @@ -13,13 +13,13 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + An ontology of miscellaneous terms for data annotation in VFB. VFB Extension Ontology https://creativecommons.org/licenses/by/4.0/</terms:license> - 19:12:2023 11:51 + 26:02:2024 12:30 VFB extension ontology - 2023-12-19 + 2024-02-26 diff --git a/vfbext.json b/vfbext.json index 0c4f2db..417edef 100644 --- a/vfbext.json +++ b/vfbext.json @@ -13,15 +13,15 @@ "val" : "https://creativecommons.org/licenses/by/4.0/" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "19:12:2023 11:51" + "val" : "26:02:2024 12:30" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "VFB extension ontology" }, { "pred" : "http://www.w3.org/2002/07/owl#versionInfo", - "val" : "2023-12-19" + "val" : "2024-02-26" } ], - "version" : "http://purl.obolibrary.org/obo/vfbext/releases/2023-12-19/vfbext.json" + "version" : "http://purl.obolibrary.org/obo/vfbext/releases/2024-02-26/vfbext.json" }, "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/BFO_0000002", diff --git a/vfbext.obo b/vfbext.obo index 58e11ea..a98cc94 100644 --- a/vfbext.obo +++ b/vfbext.obo @@ -1,5 +1,5 @@ format-version: 1.2 -date: 19:12:2023 11:51 +date: 26:02:2024 12:30 subsetdef: clone "" subsetdef: core "" subsetdef: cur "" @@ -21,7 +21,7 @@ ontology: http://virtualflybrain.org/data/VFB/OWL/vfbext.owl property_value: http://purl.org/dc/elements/1.1/description "An ontology of miscellaneous terms for data annotation in VFB." xsd:string property_value: http://purl.org/dc/elements/1.1/title "VFB Extension Ontology" xsd:string property_value: http://purl.org/dc/terms/license "https://creativecommons.org/licenses/by/4.0/" xsd:string -property_value: owl:versionInfo "2023-12-19" xsd:string +property_value: owl:versionInfo "2024-02-26" xsd:string [Term] id: BFO:0000002 diff --git a/vfbext.owl b/vfbext.owl index 6925287..0d42f14 100644 --- a/vfbext.owl +++ b/vfbext.owl @@ -24,9 +24,9 @@ An ontology of miscellaneous terms for data annotation in VFB. VFB Extension Ontology https://creativecommons.org/licenses/by/4.0/</terms:license> - 19:12:2023 11:51 + 26:02:2024 12:30 VFB extension ontology - 2023-12-19 + 2024-02-26 @@ -4077,10 +4077,10 @@ http://sourceforge.net/p/obi/obi-terms/716/ /////////////////////////////////////////////////////////////////////////////////////// --> - + - + @@ -4098,66 +4098,54 @@ http://sourceforge.net/p/obi/obi-terms/716/ - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - - - - - - - - - @@ -4170,8 +4158,8 @@ http://sourceforge.net/p/obi/obi-terms/716/ - - + + @@ -4181,7 +4169,7 @@ http://sourceforge.net/p/obi/obi-terms/716/ - + @@ -4191,7 +4179,7 @@ http://sourceforge.net/p/obi/obi-terms/716/ - + @@ -4208,8 +4196,8 @@ http://sourceforge.net/p/obi/obi-terms/716/ - - + + @@ -4471,7 +4459,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -4481,8 +4469,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4492,8 +4480,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4510,8 +4498,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4530,7 +4518,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -4540,8 +4528,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4551,8 +4539,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4569,8 +4557,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4586,8 +4574,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4597,7 +4585,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -4607,8 +4595,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4618,8 +4606,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4638,8 +4626,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4657,8 +4645,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4668,8 +4656,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4679,8 +4667,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4697,8 +4685,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4715,8 +4703,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4726,8 +4714,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4737,8 +4725,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4755,8 +4743,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4773,8 +4761,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4784,8 +4772,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4795,8 +4783,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4813,8 +4801,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4831,8 +4819,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4842,8 +4830,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4858,8 +4846,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4876,8 +4864,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4887,8 +4875,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4903,8 +4891,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4921,8 +4909,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4932,8 +4920,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4948,8 +4936,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4966,8 +4954,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4977,8 +4965,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -4993,8 +4981,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5011,8 +4999,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5022,8 +5010,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5038,8 +5026,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5056,8 +5044,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5067,8 +5055,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5083,7 +5071,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5093,7 +5081,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5112,8 +5100,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5123,8 +5111,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5139,7 +5127,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5149,7 +5137,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + @@ -5211,8 +5199,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5222,8 +5210,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5238,8 +5226,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5254,9 +5242,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -5266,8 +5254,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5281,9 +5269,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -5298,9 +5286,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -5310,8 +5298,8 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + @@ -5325,7 +5313,7 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - +