S2 ID of an article had changed (#20)

* wrt #1 * Update manually_curated_articles.tsv add extra categories to curated list * add --cache clear for pytests * add new test file * WRT feat #7; add batch processing of S2 articles * close #7 #9 * close #7 #9; add tests * fix: s2 id of a manually curated article --------- Co-authored-by: lilijap <43205236+lilijap@users.noreply.github.com>
VirtualPatientEngine · Mar 25, 2024 · 1a3b513 · 1a3b513
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diff --git a/.gitignore b/.gitignore
@@ -155,6 +155,9 @@ cython_debug/
 # .md files in the docs foldr of mkdocs
 docs/*.md
 
+# mkdocs.yml file
+mkdocs.yml
+
 # PyCharm
 #  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
 #  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore

diff --git a/app/data/manually_curated_articles.tsv b/app/data/manually_curated_articles.tsv
@@ -20,7 +20,7 @@ Physics-based GNNs	COPHY: Counterfactual Learning of Physical Dynamics	202888633
 Physics-based GNNs	Discovering Symbolic Models from Deep Learning with Inductive Biases (2020)	219966125	https://www.semanticscholar.org/paper/Discovering-Symbolic-Models-from-Deep-Learning-with-Cranmer-Sanchez-Gonzalez/643ac3ef063c77eb02a3d52637c11fe028bfae28?utm_source=direct_link
 Physics-based GNNs	Learning to Simulate Complex Physics with Graph Networks (2020)	211252550	https://www.semanticscholar.org/paper/Learning-to-Simulate-Complex-Physics-with-Graph-Sanchez-Gonzalez-Godwin/c529f5b08675f787cdcc094ee495239592339f82?utm_source=direct_link
 Physics-based GNNs	Rediscovering Newton's gravity and Solar System properties using deep learning and inductive biases (2021)	NA	
-Physics-based GNNs	Rediscovering orbital mechanics with machine learning	246607780	https://www.semanticscholar.org/paper/Rediscovering-orbital-mechanics-with-machine-Lemos-Jeffrey/0d774d92c9c03648a213e5dc416065b0b72d894e?utm_source=direct_link
+Physics-based GNNs	Rediscovering orbital mechanics with machine learning	246607780	https://www.semanticscholar.org/paper/Rediscovering-orbital-mechanics-with-machine-Lemos-Jeffrey/2232751169e57a14723bfffb4ab26aa0e0e3839a?utm_source=direct_link
 Latent space simulators (VAMP)	Molecular latent space simulators (2020)	220302172	https://www.semanticscholar.org/paper/Molecular-latent-space-simulators-Sidky-Chen/2d3000d245988a02d3c1060211e9d89c67147b49?utm_source=direct_link
 Latent space simulators (VAMP)	Extended dynamic mode decomposition with dictionary learning: A data-driven adaptive spectral decomposition of the Koopman operator (2017)	41957686	https://www.semanticscholar.org/paper/Extended-dynamic-mode-decomposition-with-dictionary-Li-Dietrich/80744010d90c8ede052c7ac6ba8c38c9de959c6e?utm_source=direct_link
 Latent space simulators (VAMP)	Time-lagged autoencoders: Deep learning of slow collective variables for molecular kinetics (2018)	ÿ4580122	https://www.semanticscholar.org/paper/Time-lagged-autoencoders%3A-Deep-learning-of-slow-for-Wehmeyer-No%C3%A9/d8d8e2c04ca47bd628bd2a499e03ad7cd29633da?utm_source=direct_link