Disable singularity

WEHI-ResearchComputing · Oct 3, 2024 · ab03544 · ab03544
1 parent cddbf03
commit ab03544
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -30,8 +30,9 @@ profiles {
         process.beforeScript   = 'echo $HOSTNAME'
     }
     apptainer {
-        apptainer.enabled   = true
-        docker.enabled        = false
+        apptainer.enabled       = true
+        singularity.enabled     = false
+        docker.enabled          = false
         singularity.pullTimeout = "3h"
         process {
             withLabel: 'BWAAlign|Samtools|Bcftools|Fastqc|Multiqc|RGridss|Rfilter|IndexDedup' {
@@ -41,6 +42,7 @@ profiles {
     }
     docker {
         docker.enabled        = true
+        apptainer.enabled     = false
         singularity.enabled   = false
         process {
             withLabel: 'BWAAlign|Samtools|Bcftools|Fastqc|Multiqc|RGridss|Rfilter|IndexDedup' {