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genome biology citation added
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umahsn authored Sep 7, 2021
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Expand Up @@ -12,7 +12,7 @@ _**v0.4.1** (Aug 3 2021)_ : Fixed a bug causing slower runtime in whole genome v
_**v0.4.0** (June 2 2021)_ : Added NanoCaller models trained on ONT reads basecalled with Guppy v4.2.2 and Bonito v0.30, as well as R10.3 reads. Added new NanoCaller models trained with long CCS reads (15-20kb library selection). Improved indel calling with rolling window for candidate selection which helps with indels in low complexity regions.

## Citing NanoCaller
Please cite: Ahsan, Umair and Liu, Qian and Wang, Kai. NanoCaller for accurate detection of SNPs and small indels from long-read sequencing by deep neural networks. bioRxiv 2019.12.29.890418; doi: https://doi.org/10.1101/2019.12.29.890418
Please cite: Ahsan, M.U., Liu, Q., Fang, L. et al. NanoCaller for accurate detection of SNPs and indels in difficult-to-map regions from long-read sequencing by haplotype-aware deep neural networks. Genome Biol 22, 261 (2021). https://doi.org/10.1186/s13059-021-02472-2.

## Installation
NanoCaller can be installed using Docker or Conda. Please refer to [Installation](docs/Install.md) for instructions regarding installing NanoCaller.
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