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v2.0.0 Major API Update

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@umahsn umahsn released this 25 Jan 20:11
· 40 commits to master since this release
  1. Major changes in API to simplify run commands, with PATH variable updated automatically upon environment creation.
  2. Create summary of variant calling results using RTGtools upon completion
  3. A new parameter --impute_indel_phase allows indel calling when phasing information cannot be provided
  4. Fixed an indel calling bug that affected indel prediction near boundaries of regions specified