Skip to content

v3.2.0 Haploid Variant Calling
Compare
Choose a tag to compare
@umahsn umahsn released this 14 May 15:38
· 15 commits to master since this release
v3.2.0
adc2e98

Support added for haploid variant calling which has significant improvement in recall for indel calling. New feature generation methods and models are are used for haploid SNP and indel calling. Now chrY and chrM are assumed to be haploid, with additional parameter --haploid_X to specify if chrX is haploid. Another parameter --haploid_genome can be used for haploid variant calling on all chromosomes.

Assets 2
Loading