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v3.4.0 Allelic Depth
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@umahsn umahsn released this 31 Jul 15:08
· 9 commits to master since this release
v3.4.0
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Learn about vigilant mode.

VCF files contain total and strand-specific allele depths for SNP calls from SNP calling models. A new mode for short ONT reads (5-10kbp) added. --phase_qual_score parameter filters out low quality SNP calls from phasing by WhatsHap; these SNP calls are kept in the output, but neither phased nor used for phasing reads.

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