Releases: WGLab/NanoCaller
Releases · WGLab/NanoCaller
v2.1.1
v2.1.0
v2.0.0 Major API Update
- Major changes in API to simplify run commands, with PATH variable updated automatically upon environment creation.
- Create summary of variant calling results using RTGtools upon completion
- A new parameter
--impute_indel_phase
allows indel calling when phasing information cannot be provided - Fixed an indel calling bug that affected indel prediction near boundaries of regions specified
v1.0.1
v1.0.0
v0.4.1
v0.4.0
Major update in NanoCaller SNP and indel calling routines. Several new models trained on ONT reads basecalled with Guppy4.2.2 and Bonito are added, as well as a new model for R10.3 reads. SNP models trained on longer CCS reads are also added. Indel calling is improved to increase sensitivity of indels in low complexity regions.
v0.3.3
v0.3.2
v0.3.1 Fixed issues with excessive processes created by python mutliprocessing
Disabled python multiprocessing pooling when single CPU is used. This creates half the number of processes when using NanoCaller_WGS.py for whole genome variant calling, leading to less overhead.