Skip to content

Commit

Permalink
change formulation
Browse files Browse the repository at this point in the history
  • Loading branch information
yaru0818 committed Sep 5, 2023
1 parent 227e08b commit fcc8c6f
Show file tree
Hide file tree
Showing 23 changed files with 169 additions and 45 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ void CorrectedConfigurationInner::interaction(size_t index_i, Real dt)
//=================================================================================================//
void CorrectedConfigurationInner::update(size_t index_i, Real dt)
{
Real det_sqr = SMAX((alpha_ - B_[index_i].determinant()), Real(0));
Real det_sqr = alpha_;
Matd inverse = B_[index_i].inverse();
Real weight1_ = B_[index_i].determinant() / (B_[index_i].determinant() + det_sqr);
Real weight2_ = det_sqr / (B_[index_i].determinant() + det_sqr);
Expand Down
Original file line number Diff line number Diff line change
@@ -0,0 +1,44 @@
<?xml version="1.0" encoding="UTF-8" ?>
<TotalMechanicalEnergy>
<Snapshot_0 TotalMechanicalEnergy_0="9860.5411200000017" />
<Snapshot_200 TotalMechanicalEnergy_0="9854.3377912566211" />
<Snapshot_400 TotalMechanicalEnergy_0="9856.4125217955607" />
<Snapshot_600 TotalMechanicalEnergy_0="9849.9745631325459" />
<Snapshot_800 TotalMechanicalEnergy_0="9849.8758817360376" />
<Snapshot_1000 TotalMechanicalEnergy_0="9848.0485177454775" />
<Snapshot_1200 TotalMechanicalEnergy_0="9849.6635740457841" />
<Snapshot_1400 TotalMechanicalEnergy_0="9850.8825812537343" />
<Snapshot_1600 TotalMechanicalEnergy_0="9848.9871357715128" />
<Snapshot_1800 TotalMechanicalEnergy_0="9848.5025277937202" />
<Snapshot_2000 TotalMechanicalEnergy_0="9844.9463678840693" />
<Snapshot_2200 TotalMechanicalEnergy_0="9850.5261512150828" />
<Snapshot_2400 TotalMechanicalEnergy_0="9851.4718427745884" />
<Snapshot_2600 TotalMechanicalEnergy_0="9850.7691405176938" />
<Snapshot_2800 TotalMechanicalEnergy_0="9847.1915890584914" />
<Snapshot_3000 TotalMechanicalEnergy_0="9848.627057312231" />
<Snapshot_3200 TotalMechanicalEnergy_0="9850.8485979503821" />
<Snapshot_3400 TotalMechanicalEnergy_0="9850.5304489982445" />
<Snapshot_3600 TotalMechanicalEnergy_0="9850.2276740944253" />
<Snapshot_3800 TotalMechanicalEnergy_0="9846.4125539781253" />
<Snapshot_4000 TotalMechanicalEnergy_0="9850.5548140120736" />
<Snapshot_4200 TotalMechanicalEnergy_0="9849.6408308983791" />
<Snapshot_4400 TotalMechanicalEnergy_0="9848.6588084302421" />
<Snapshot_4600 TotalMechanicalEnergy_0="9848.2140356841737" />
<Snapshot_4800 TotalMechanicalEnergy_0="9844.1652903832637" />
<Snapshot_5000 TotalMechanicalEnergy_0="9851.7877770182768" />
<Snapshot_5200 TotalMechanicalEnergy_0="9848.5974083173369" />
<Snapshot_5400 TotalMechanicalEnergy_0="9846.3489667379308" />
<Snapshot_5600 TotalMechanicalEnergy_0="9842.8687076149872" />
<Snapshot_5800 TotalMechanicalEnergy_0="9843.1957803726582" />
<Snapshot_6000 TotalMechanicalEnergy_0="9846.7795559006081" />
<Snapshot_6200 TotalMechanicalEnergy_0="9844.3676801064303" />
<Snapshot_6400 TotalMechanicalEnergy_0="9844.3118676361446" />
<Snapshot_6600 TotalMechanicalEnergy_0="9842.3120374774189" />
<Snapshot_6800 TotalMechanicalEnergy_0="9845.0314630876546" />
<Snapshot_7000 TotalMechanicalEnergy_0="9845.5097380630323" />
<Snapshot_7200 TotalMechanicalEnergy_0="9843.7350331853631" />
<Snapshot_7400 TotalMechanicalEnergy_0="9842.9403754022296" />
<Snapshot_7600 TotalMechanicalEnergy_0="9841.2999779666279" />
<Snapshot_7800 TotalMechanicalEnergy_0="9846.0752320722149" />
<Snapshot_8000 TotalMechanicalEnergy_0="9845.6264028751993" />
</TotalMechanicalEnergy>
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,6 @@
<Snapshot number_of_snapshot_for_local_result_="41" />
</Snapshot_Element>
<Result_Element>
<Particle_0 snapshot_0="9860.5411200000017" snapshot_1="9854.1466499953785" snapshot_2="9855.7581726547105" snapshot_3="9850.05150107804" snapshot_4="9849.4018744311215" snapshot_5="9847.4364981629842" snapshot_6="9849.6867687744307" snapshot_7="9851.6220080756757" snapshot_8="9847.1742949091113" snapshot_9="9848.5615434034898" snapshot_10="9847.7468529656526" snapshot_11="9852.7188593693172" snapshot_12="9850.7645761542644" snapshot_13="9848.7736108036006" snapshot_14="9847.7119396299422" snapshot_15="9845.8831329151271" snapshot_16="9853.8652652122837" snapshot_17="9848.4762844655488" snapshot_18="9847.4163085120963" snapshot_19="9845.8308657477974" snapshot_20="9847.7042092910524" snapshot_21="9851.1049746852204" snapshot_22="9849.1589375557942" snapshot_23="9844.3078765639748" snapshot_24="9843.3579822474785" snapshot_25="9847.0419403766373" snapshot_26="9845.9365415315751" snapshot_27="9845.3260230399392" snapshot_28="9842.9264923473711" snapshot_29="9843.9477969692416" snapshot_30="9846.2436682829684" snapshot_31="9844.4318711660489" snapshot_32="9843.8779100013162" snapshot_33="9842.2405907536431" snapshot_34="9843.550538547679" snapshot_35="9844.7704457686159" snapshot_36="9841.7610612851677" snapshot_37="9841.9020334930137" snapshot_38="9836.9429715431797" snapshot_39="9842.4348160601548" snapshot_40="9839.952478435669" />
<Particle_0 snapshot_0="9860.5411200000017" snapshot_1="9854.3377912566175" snapshot_2="9856.4125217954461" snapshot_3="9849.9745631344595" snapshot_4="9849.8758818193292" snapshot_5="9848.0485177725677" snapshot_6="9849.6636242004097" snapshot_7="9850.8825728222928" snapshot_8="9848.9785770319995" snapshot_9="9848.2494737752422" snapshot_10="9844.606460320836" snapshot_11="9849.6718387458368" snapshot_12="9849.2592913271037" snapshot_13="9852.3107820973328" snapshot_14="9849.9512284659431" snapshot_15="9847.0516200078691" snapshot_16="9851.7703032173977" snapshot_17="9847.5302229301742" snapshot_18="9848.1971260362025" snapshot_19="9847.1961781003847" snapshot_20="9848.6075658498503" snapshot_21="9849.3678674882685" snapshot_22="9848.9163029086121" snapshot_23="9848.2701781222295" snapshot_24="9844.9092222077034" snapshot_25="9848.5006101332383" snapshot_26="9846.8312605642332" snapshot_27="9845.4435904715338" snapshot_28="9844.2021144300415" snapshot_29="9847.614578960689" snapshot_30="9846.5653195737978" snapshot_31="9844.4355334299798" snapshot_32="9845.318999063189" snapshot_33="9845.9607957369153" snapshot_34="9845.4484837556865" snapshot_35="9845.6358765263121" snapshot_36="9844.1141894059638" snapshot_37="9840.5563744775991" snapshot_38="9839.5465936534547" snapshot_39="9845.7418856053846" snapshot_40="9845.1784698102965" />
</Result_Element>
</result>

This file was deleted.

Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
<?xml version="1.0" encoding="UTF-8" ?>
<result>
<Snapshot_Element>
<Snapshot number_of_snapshot_for_local_result_="41" />
</Snapshot_Element>
<Result_Element>
<Particle_0 snapshot_0="9860.5411199999999" snapshot_1="9854.3377912566157" snapshot_2="9856.4125217962355" snapshot_3="9849.9745631343376" snapshot_4="9849.8758818139031" snapshot_5="9848.0485136853349" snapshot_6="9849.6634187447034" snapshot_7="9850.9302786793833" snapshot_8="9848.9158529822143" snapshot_9="9847.6026882154874" snapshot_10="9845.202072328666" snapshot_11="9851.5748534377763" snapshot_12="9850.9021658354359" snapshot_13="9850.8635310362533" snapshot_14="9847.7687574208976" snapshot_15="9849.623399991764" snapshot_16="9852.9744245720904" snapshot_17="9851.0900434810428" snapshot_18="9849.3917683223717" snapshot_19="9845.8855914568958" snapshot_20="9847.7324789892882" snapshot_21="9851.4137257317307" snapshot_22="9847.2923597559529" snapshot_23="9848.7436678121103" snapshot_24="9844.4033374152605" snapshot_25="9847.4288780139614" snapshot_26="9848.150066208831" snapshot_27="9846.8156038544439" snapshot_28="9843.2572973110764" snapshot_29="9845.3871649045323" snapshot_30="9847.4840541791091" snapshot_31="9844.5981763469717" snapshot_32="9845.6479699729098" snapshot_33="9841.5339917938472" snapshot_34="9844.2134558685138" snapshot_35="9846.889098921838" snapshot_36="9842.6145260842859" snapshot_37="9842.5949542233957" snapshot_38="9843.3630262029837" snapshot_39="9846.9969432364014" snapshot_40="9845.1798805122526" />
</Result_Element>
</result>
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
<?xml version="1.0" encoding="UTF-8" ?>
<result>
<Snapshot_Element>
<Snapshot number_of_snapshot_for_local_result_="41" />
</Snapshot_Element>
<Result_Element>
<Particle_0 snapshot_0="9860.5411200000017" snapshot_1="9854.337791256612" snapshot_2="9856.4125217946093" snapshot_3="9849.9745631290898" snapshot_4="9849.8758816470836" snapshot_5="9848.0485196927857" snapshot_6="9849.6637635032639" snapshot_7="9850.8387670089087" snapshot_8="9849.086743174892" snapshot_9="9849.988783598732" snapshot_10="9844.4494687077295" snapshot_11="9849.9068815754963" snapshot_12="9850.2310790077427" snapshot_13="9851.7305690820904" snapshot_14="9847.1055082599814" snapshot_15="9847.0202039014912" snapshot_16="9851.7822750460437" snapshot_17="9848.9862355008991" snapshot_18="9848.6132184856724" snapshot_19="9847.1655449939572" snapshot_20="9848.6787226719025" snapshot_21="9847.8319163861452" snapshot_22="9847.3720923823166" snapshot_23="9847.2211742237196" snapshot_24="9843.3678922080217" snapshot_25="9848.5531050513873" snapshot_26="9849.9498546508657" snapshot_27="9844.2035808844576" snapshot_28="9846.0847889127726" snapshot_29="9847.9288462863133" snapshot_30="9847.5931748057083" snapshot_31="9846.5149660486568" snapshot_32="9845.2293326692889" snapshot_33="9844.6485159206986" snapshot_34="9847.8752940242739" snapshot_35="9847.1129618540854" snapshot_36="9845.4013781416579" snapshot_37="9843.7240283904594" snapshot_38="9839.1763266694797" snapshot_39="9846.293951314492" snapshot_40="9843.6760979099799" />
</Result_Element>
</result>
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
<?xml version="1.0" encoding="UTF-8" ?>
<result>
<Snapshot_Element>
<Snapshot number_of_snapshot_for_local_result_="41" />
</Snapshot_Element>
<Result_Element>
<Particle_0 snapshot_0="9860.5411200000053" snapshot_1="9854.3377912566175" snapshot_2="9856.4125217969977" snapshot_3="9849.9745631409241" snapshot_4="9849.8758816489662" snapshot_5="9848.0485236726163" snapshot_6="9849.6638373820115" snapshot_7="9850.80798118456" snapshot_8="9849.1610997164735" snapshot_9="9848.1809124556676" snapshot_10="9844.2315167512606" snapshot_11="9849.6161028569641" snapshot_12="9851.4390534635677" snapshot_13="9849.8340166708076" snapshot_14="9850.1189371779074" snapshot_15="9847.7323070795701" snapshot_16="9852.5698099176334" snapshot_17="9848.1584476767966" snapshot_18="9847.144156183238" snapshot_19="9842.5556544309311" snapshot_20="9845.7664669081041" snapshot_21="9849.6747518821157" snapshot_22="9850.6328578411212" snapshot_23="9847.2045024598665" snapshot_24="9845.4711898569003" snapshot_25="9849.1318644228068" snapshot_26="9847.8545794997808" snapshot_27="9846.1470387228655" snapshot_28="9842.5210997923132" snapshot_29="9844.4298808027306" snapshot_30="9844.8892128640309" snapshot_31="9844.8574877061801" snapshot_32="9844.6374556772971" snapshot_33="9842.5843381374634" snapshot_34="9843.698098351666" snapshot_35="9844.9965646358887" snapshot_36="9843.8227546474773" snapshot_37="9842.1094973160416" snapshot_38="9841.6601329195109" snapshot_39="9844.3284914501019" snapshot_40="9843.2636596957054" />
</Result_Element>
</result>
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
<?xml version="1.0" encoding="UTF-8" ?>
<result>
<Snapshot_Element>
<Snapshot number_of_snapshot_for_local_result_="41" />
</Snapshot_Element>
<Result_Element>
<Particle_0 snapshot_0="9860.5411200000017" snapshot_1="9854.3377912566211" snapshot_2="9856.4125217955607" snapshot_3="9849.9745631325459" snapshot_4="9849.8758817360376" snapshot_5="9848.0485177454775" snapshot_6="9849.6635740457841" snapshot_7="9850.8825812537343" snapshot_8="9848.9871357715128" snapshot_9="9848.5025277937202" snapshot_10="9844.9463678840693" snapshot_11="9850.5261512150828" snapshot_12="9851.4718427745884" snapshot_13="9850.7691405176938" snapshot_14="9847.1915890584914" snapshot_15="9848.627057312231" snapshot_16="9850.8485979503821" snapshot_17="9850.5304489982445" snapshot_18="9850.2276740944253" snapshot_19="9846.4125539781253" snapshot_20="9850.5548140120736" snapshot_21="9849.6408308983791" snapshot_22="9848.6588084302421" snapshot_23="9848.2140356841737" snapshot_24="9844.1652903832637" snapshot_25="9851.7877770182768" snapshot_26="9848.5974083173369" snapshot_27="9846.3489667379308" snapshot_28="9842.8687076149872" snapshot_29="9843.1957803726582" snapshot_30="9846.7795559006081" snapshot_31="9844.3676801064303" snapshot_32="9844.3118676361446" snapshot_33="9842.3120374774189" snapshot_34="9845.0314630876546" snapshot_35="9845.5097380630323" snapshot_36="9843.7350331853631" snapshot_37="9842.9403754022296" snapshot_38="9841.2999779666279" snapshot_39="9846.0752320722149" snapshot_40="9845.6264028751993" />
</Result_Element>
</result>

This file was deleted.

Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<?xml version="1.0" encoding="UTF-8" ?>
<dtw_distance>
<DTWDistance TotalMechanicalEnergy_0="20.0" />
<DTWDistance TotalMechanicalEnergy_0="10.637884956915514" />
</dtw_distance>
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
true
13
4
false
6
1
Original file line number Diff line number Diff line change
@@ -0,0 +1,44 @@
<?xml version="1.0" encoding="UTF-8" ?>
<FreeSurfaceHeight>
<Snapshot_0 FreeSurfaceHeight_0="0.89000000000000001" />
<Snapshot_200 FreeSurfaceHeight_0="0.98514414841385001" />
<Snapshot_400 FreeSurfaceHeight_0="1.1106007917062282" />
<Snapshot_600 FreeSurfaceHeight_0="1.0473411509620756" />
<Snapshot_800 FreeSurfaceHeight_0="0.93802385238380837" />
<Snapshot_1000 FreeSurfaceHeight_0="0.92691220087507431" />
<Snapshot_1200 FreeSurfaceHeight_0="1.0138857250775197" />
<Snapshot_1400 FreeSurfaceHeight_0="1.0995494526716711" />
<Snapshot_1600 FreeSurfaceHeight_0="1.0226171761426492" />
<Snapshot_1800 FreeSurfaceHeight_0="0.91799455959842036" />
<Snapshot_2000 FreeSurfaceHeight_0="0.93730952968420711" />
<Snapshot_2200 FreeSurfaceHeight_0="1.078769207514487" />
<Snapshot_2400 FreeSurfaceHeight_0="1.107898223465789" />
<Snapshot_2600 FreeSurfaceHeight_0="0.95900026831182184" />
<Snapshot_2800 FreeSurfaceHeight_0="0.91938193304566251" />
<Snapshot_3000 FreeSurfaceHeight_0="0.99416916752915552" />
<Snapshot_3200 FreeSurfaceHeight_0="1.0772641086238655" />
<Snapshot_3400 FreeSurfaceHeight_0="1.0562467039550776" />
<Snapshot_3600 FreeSurfaceHeight_0="0.94338605156576605" />
<Snapshot_3800 FreeSurfaceHeight_0="0.92340302681372444" />
<Snapshot_4000 FreeSurfaceHeight_0="1.0239197460952016" />
<Snapshot_4200 FreeSurfaceHeight_0="1.118091067721285" />
<Snapshot_4400 FreeSurfaceHeight_0="1.0048176279789929" />
<Snapshot_4600 FreeSurfaceHeight_0="0.91581743533963489" />
<Snapshot_4800 FreeSurfaceHeight_0="0.96180172166027245" />
<Snapshot_5000 FreeSurfaceHeight_0="1.0746112760418056" />
<Snapshot_5200 FreeSurfaceHeight_0="1.0662191631196896" />
<Snapshot_5400 FreeSurfaceHeight_0="0.96492961261556187" />
<Snapshot_5600 FreeSurfaceHeight_0="0.9286327410212083" />
<Snapshot_5800 FreeSurfaceHeight_0="0.98543568067764831" />
<Snapshot_6000 FreeSurfaceHeight_0="1.0930304925728898" />
<Snapshot_6200 FreeSurfaceHeight_0="1.0580974458668713" />
<Snapshot_6400 FreeSurfaceHeight_0="0.92774039650192119" />
<Snapshot_6600 FreeSurfaceHeight_0="0.93717083729613559" />
<Snapshot_6800 FreeSurfaceHeight_0="1.0446662438246259" />
<Snapshot_7000 FreeSurfaceHeight_0="1.0903710649027545" />
<Snapshot_7200 FreeSurfaceHeight_0="0.98893140434320281" />
<Snapshot_7400 FreeSurfaceHeight_0="0.92859188620138733" />
<Snapshot_7600 FreeSurfaceHeight_0="0.97367782478077147" />
<Snapshot_7800 FreeSurfaceHeight_0="1.0609923152514369" />
<Snapshot_8000 FreeSurfaceHeight_0="1.0701390497502437" />
</FreeSurfaceHeight>
Loading

0 comments on commit fcc8c6f

Please sign in to comment.